Citrus Sinensis ID: 023749

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MEIIAGTTATTMATQSITPKGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASISDPTSRLLGY
Secondary Structure (PSIPRED)
ccEEEccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHccccccccHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHHHHccccEEEEEcccEEEcHHHHHHHHccEEEEEEccHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHcccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEccccccHcHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHHHHHcccEEEEEcccEEEcHHHHHHHHccEEEEEEccHHHHHHHcccccccccHHHHHHHHHHHHcHHHHHccEEEEcccccHHHHHHHHHHHcHHHHHHHHHHHcHHHcccccccEccc
Coil and Loop (DISEMBL)
meiiagttattmatqsitpkglkfdppfsllhsqsyapirTSLQYSiisrkprittrsiaddttsntvtkvaaedpsfavKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYyyfdsdslvfeaaggesAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLwidvppgmvarmdhsgfpesevLPQLFALYKEMRDGYATADVTVSLQKVASqlgyddldavtteDMTLEVKWLYnasisdptsrllgy
Flexible Loop (DISEMBL)
meiiagttattmatqsitpKGLKFDPPFSLLHSQSYAPIRTSlqysiisrkprittrsiaddttsntvtkvaaedpsfavkKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKwlynasisdptsrllgy
Low Complexity Region (SEG)
MEiiagttattmatqsitPKGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASISDPTSRLLGY
Disordered region (IsUnstruct)
***********************F**PFSLLHSQSYAPIRTSLQYSIIS*******************************************GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA**************************QLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI**********
Disordered Region (DISOPRED)
*****GTTATTMATQSITPKGLKFDPPFSLLHSQSYAPIRTS***********************************************ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVA***************LFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASISDP*******
Disordered Region (DISEMBL)
MEIIAGTTATTMATQSITPKGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG********************TEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASISDPTSRLLGY
Disordered Region (DISPRO)
MEIIAGTTATTMATQSITPKGLKFDPP***********************************************DPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASISDPTSRL*G*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEIIAGTTATTMATQSITPKGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASISDPTSRLLGY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	278	2.2.26 [Sep-21-2011]
Q9LW20	280	Probable inactive shikima	yes	no	0.913	0.907	0.520	7e-68
Q5NTH4	308	Shikimate kinase 1, chlor	no	no	0.723	0.652	0.354	2e-29
Q5NTH3	307	Shikimate kinase 2, chlor	no	no	0.690	0.625	0.355	8e-29
Q7X7H9	287	Shikimate kinase 3, chlor	no	no	0.665	0.644	0.363	3e-28
Q9SJ05	303	Shikimate kinase 1, chlor	no	no	0.647	0.594	0.336	1e-24
Q00497	300	Shikimate kinase, chlorop	N/A	no	0.676	0.626	0.356	1e-23
Q8GY88	300	Shikimate kinase 2, chlor	no	no	0.647	0.6	0.338	2e-22
Q5N4D3	190	Shikimate kinase OS=Synec	yes	no	0.521	0.763	0.375	2e-21
Q31PU5	190	Shikimate kinase OS=Synec	yes	no	0.521	0.763	0.375	2e-21
Q2JKT7	187	Shikimate kinase OS=Synec	yes	no	0.525	0.780	0.385	8e-21

>sp|Q9LW20|SKL1_ARATH Probable inactive shikimate kinase like 1, chloroplastic OS=Arabidopsis thaliana GN=SKL1 PE=2 SV=1

 Score =  257 bits (656), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 138/265 (52%), Positives = 188/265 (70%), Gaps = 11/265 (4%)

Query: 1   MEIIAGTTATTMATQSITPKGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRIT-TRSI 59
           MEI + + + T+      P+ L    P +   +    P+ +S    +IS   RI  +RS+
Sbjct: 1   MEIFSASASLTLT--GFVPRLLPLLSPQA--RTTLCKPLLSSSSTRLISCHSRIAPSRSL 56

Query: 60  ADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRY 119
           AD + S  ++ V   DP   VK+KA DI+ ELKG S+FLVG+NN+IKT+ GK LA+ALRY
Sbjct: 57  ADQSASTGIS-VVDSDPIDVVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRY 115

Query: 120 YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSA 179
           YYFDSD+L+ EAAGG  +A+A +E+DEK +Q++ETEVLKQLSSMGRLVVCAG+GAVQS  
Sbjct: 116 YYFDSDNLITEAAGGNVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLR 175

Query: 180 NLALLRHGISLWIDVPPGMVARMDHSGFPESEVLPQLF----ALYKEMRDGYATADVTVS 235
           NLALLRHGIS+WIDVP  + A+ D   F  SE  P+LF    A Y++ R GY TADV++S
Sbjct: 176 NLALLRHGISIWIDVPLDITAKGDDDSF-HSEPSPELFDTLKASYEKSRKGYETADVSIS 234

Query: 236 LQKVASQLGYDDLDAVTTEDMTLEV 260
           L+K+A++L ++DL+AVT+ED+ LE+
Sbjct: 235 LEKIATKLEFEDLEAVTSEDIALEI 259

Required for chloroplast biogenesis.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5NTH4|SK1_ORYSJ Shikimate kinase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=SK1 PE=1 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 122/220 (55%), Gaps = 19/220 (8%)

Query: 53  RITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKF 112
           R    S   +T  N+V      D +  +K+K+ ++   L G  ++LVGM  + K+ +GK 
Sbjct: 62  RAKKSSGGHETLHNSV------DEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVGKI 115

Query: 113 LADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172
           +++ L Y +FDSD LV +A G  S A+ F+   E  ++  E+ VL+ LSSM RLVV  G 
Sbjct: 116 MSEVLGYSFFDSDKLVEQAVGMPSVAQIFKVHSEAFFRDNESSVLRDLSSMKRLVVATGG 175

Query: 173 GAVQSSANLALLRHGISLWIDVPPGMVAR------------MDH-SGFPESEVLPQLFAL 219
           GAV    N   ++ G+S+W+DVP   +AR            +D  SG P +    +L  L
Sbjct: 176 GAVIRPVNWKYMKKGLSVWLDVPLDALARRIAKVGTASRPLLDQPSGDPYTMAFSKLSML 235

Query: 220 YKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLE 259
            ++  D YA ADV VSL+++AS+ G+DD+  +T  D+ +E
Sbjct: 236 AEQRGDAYANADVRVSLEEIASKQGHDDVSKLTPTDIAIE 275

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q5NTH3|SK2_ORYSJ Shikimate kinase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=SK2 PE=1 SV=1

 Score =  127 bits (319), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 75/211 (35%), Positives = 118/211 (55%), Gaps = 19/211 (9%)

Query: 62  DTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYY 121
           D+  N+V      D +  +K+K+ ++   L G  ++LVGM  + K+ + K LA+ L Y +
Sbjct: 69  DSLHNSV------DEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVAKILAEVLGYSF 122

Query: 122 FDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANL 181
           FDSD LV +A G  S A+ F+E  E  ++  E+ VL+ LSSM RLVV  G GAV    N 
Sbjct: 123 FDSDKLVEQAVGMPSVAQIFKEHSEAFFRDNESSVLRDLSSMRRLVVATGGGAVIRPVNW 182

Query: 182 ALLRHGISLWIDVPPGMVAR------------MDH-SGFPESEVLPQLFALYKEMRDGYA 228
             ++ G+S+W+DVP   +AR            +D  S  P +    +L  L ++  D YA
Sbjct: 183 KYMKKGLSVWLDVPLDALARRIAQVGTASRPLLDQPSSDPYTAAFSKLSMLAEQRGDAYA 242

Query: 229 TADVTVSLQKVASQLGYDDLDAVTTEDMTLE 259
            AD  VSL+++A++ G+DD+  +T  D+ +E
Sbjct: 243 NADARVSLEEIAAKQGHDDVSKLTPTDIAIE 273

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q7X7H9|SK3_ORYSJ Shikimate kinase 3, chloroplastic OS=Oryza sativa subsp. japonica GN=SK3 PE=1 SV=2

 Score =  125 bits (315), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/198 (36%), Positives = 111/198 (56%), Gaps = 13/198 (6%)

Query: 75  DPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG 134
           D +  +K+KA D+   L    ++LVGM  + KT +GK LA+ L Y +FDSD LV +A G 
Sbjct: 73  DEALVLKQKAEDVVPYLNDRCIYLVGMMGSGKTTVGKILAEVLGYSFFDSDKLVEKAVGI 132

Query: 135 ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDV 194
            S A+ F+   E  ++  E+EVL+ LSSM RLVV  G GAV    N + ++ G ++W+DV
Sbjct: 133 SSVAEIFQLHSEAFFRDNESEVLRDLSSMHRLVVATGGGAVIRPINWSYMKKGSTIWLDV 192

Query: 195 PPGMVARM-------------DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVAS 241
           P   +AR                SG P ++   +L AL+++  D YA AD  VSL+ +A 
Sbjct: 193 PLDALARRIAAVGTASRPLLHQESGDPYAKAYAKLTALFEQRMDSYANADARVSLEHIAV 252

Query: 242 QLGYDDLDAVTTEDMTLE 259
           + G+ ++  +T   + +E
Sbjct: 253 KQGHSNVTTLTPSAIAIE 270

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q9SJ05|SK1_ARATH Shikimate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=SK1 PE=1 SV=2

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 105/193 (54%), Gaps = 13/193 (6%)

Query: 80  VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAK 139
           +K+KA ++   L G S++LVGM  + KT +GK ++  L Y +FD D+L+ +A  G S A+
Sbjct: 89  LKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAE 148

Query: 140 AFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMV 199
            F    E  ++  ET+ LK+LSS  ++VV  G GAV    N   +  GIS+W+DVP   +
Sbjct: 149 IFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEAL 208

Query: 200 ARM-------------DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYD 246
           A               D SG   S    +L A++ E  + Y  A+  VSL+ +A++ GY 
Sbjct: 209 AHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYK 268

Query: 247 DLDAVTTEDMTLE 259
           ++  +T  ++ +E
Sbjct: 269 NVSDLTPTEIAIE 281

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q00497|SK_SOLLC Shikimate kinase, chloroplastic OS=Solanum lycopersicum GN=SK PE=1 SV=1

 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/202 (35%), Positives = 104/202 (51%), Gaps = 14/202 (6%)

Query: 72  AAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131
           A+ D    +K KA ++   L G  V+LVGM    KT +G+ LA+ L Y +FD D L+ +A
Sbjct: 83  ASIDEIETLKNKAEEVEEYLDGRCVYLVGMMGCGKTTVGRILAETLGYSFFDCDRLIEQA 142

Query: 132 AGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLW 191
            GG + A+ F    E  ++  ETEVL +LS M RLVV  G GAV    N   +  GIS+W
Sbjct: 143 VGGITVAEIFELRGESFFRDNETEVLHKLSLMHRLVVSTGGGAVVRPINWRHMHKGISVW 202

Query: 192 IDVPPGMVARM-------------DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQK 238
           +DVP   +A+              + SG      L +L  L +   + YA A   VSL+ 
Sbjct: 203 LDVPLEALAKRITTEGTKSRPLLHEESGDVYDTTLKRLTTLMETRGENYANASARVSLEN 262

Query: 239 VASQLGYDDLDAVTTEDMTLEV 260
           +A +    D+  +T  ++TLEV
Sbjct: 263 IALK-REKDVCHITPAEITLEV 283

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q8GY88|SK2_ARATH Shikimate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=SK2 PE=1 SV=1

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 15/195 (7%)

Query: 80  VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAK 139
           +KKKA ++   L G S++LVGM  + KT +GK +A +L Y +FD D+L+ +A  G S A+
Sbjct: 85  LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAE 144

Query: 140 AFRESDEKGYQQAETEVLKQLSSM-GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGM 198
            F    E  +++ ETE LK+LS M  ++VV  G GAV    N   +  GIS+W+DVP   
Sbjct: 145 IFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEA 204

Query: 199 VARM--------------DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLG 244
           +A                D SG   +  L +L  ++    + Y  A   VSL+ +  +LG
Sbjct: 205 LAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLG 264

Query: 245 YDDLDAVTTEDMTLE 259
           Y  +  +T  ++ +E
Sbjct: 265 YRSVSDLTPAEIAIE 279

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q5N4D3|AROK_SYNP6 Shikimate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=aroK PE=3 SV=1

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 94/157 (59%), Gaps = 12/157 (7%)

Query: 89  TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKG 148
           T L G  +FLVG+  + KT +GK LA++L Y Y D+DSL+ E   G S  + F    E G
Sbjct: 5   TALNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLI-ENVTGRSIPEIFASDGEAG 63

Query: 149 YQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVP-PGMVARMDHSGF 207
           ++Q ET+VL++++S  RLVV  G G V    N + L+ G+ +W+DVP P ++ R++    
Sbjct: 64  FRQIETQVLEEVASYRRLVVATGGGIVIRPENWSYLQQGLVIWLDVPIPELLRRLEGD-- 121

Query: 208 PESEVLPQ-------LFALYKEMRDGYATADVTVSLQ 237
            ++  L Q       L AL+++ RD YA AD+ ++++
Sbjct: 122 -QNRPLLQTEAPATTLQALWEQRRDRYAQADLRIAIE 157

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q31PU5|AROK_SYNE7 Shikimate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=aroK PE=3 SV=1

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 94/157 (59%), Gaps = 12/157 (7%)

Query: 89  TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKG 148
           T L G  +FLVG+  + KT +GK LA++L Y Y D+DSL+ E   G S  + F    E G
Sbjct: 5   TALNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLI-ENVTGRSIPEIFASDGEAG 63

Query: 149 YQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVP-PGMVARMDHSGF 207
           ++Q ET+VL++++S  RLVV  G G V    N + L+ G+ +W+DVP P ++ R++    
Sbjct: 64  FRQIETQVLEEVASYRRLVVATGGGIVIRPENWSYLQQGLVIWLDVPIPELLRRLEGD-- 121

Query: 208 PESEVLPQ-------LFALYKEMRDGYATADVTVSLQ 237
            ++  L Q       L AL+++ RD YA AD+ ++++
Sbjct: 122 -QNRPLLQTEAPATTLQALWEQRRDRYAQADLRIAIE 157

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

>sp|Q2JKT7|AROK_SYNJB Shikimate kinase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=aroK PE=3 SV=1

 Score =  100 bits (250), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 88/153 (57%), Gaps = 7/153 (4%)

Query: 91  LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ 150
           L+G +V+L+GM  + K+ +G  LA  LR+ +FD+D LV E  GG S A+ F E  E  ++
Sbjct: 10  LRGVNVYLIGMMGSGKSTVGSELAAQLRFQFFDTDGLV-EQVGGSSIAQIFAEHGEAYFR 68

Query: 151 QAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDHSGFPES 210
             ET+VL QLSS  RLV+  G G V    N + L HG+++W+DV P ++ +       + 
Sbjct: 69  DLETQVLAQLSSYTRLVIATGGGIVLRPKNWSYLHHGLTVWLDVAPELIWQRLKRDPGQR 128

Query: 211 EVL----PQ--LFALYKEMRDGYATADVTVSLQ 237
            +L    PQ  L+ L +E    YA ADV V ++
Sbjct: 129 PLLQTPDPQAALYKLMQEREPFYAQADVRVPIR 161

Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
449464238	307	PREDICTED: shikimate kinase, chloroplast	0.780	0.706	0.613	5e-72
225451543	305	PREDICTED: shikimate kinase, chloroplast	0.737	0.672	0.644	5e-71
255543635	292	protein with unknown function [Ricinus c	0.841	0.801	0.605	9e-71
224129236	286	shikimate kinase [Populus trichocarpa] g	0.776	0.755	0.617	2e-70
388510864	280	unknown [Lotus japonicus]	0.787	0.782	0.617	7e-70
30688547	280	shikimate kinase like 1 [Arabidopsis tha	0.913	0.907	0.520	4e-66
356498875	280	PREDICTED: shikimate kinase, chloroplast	0.715	0.710	0.640	5e-66
358249076	289	uncharacterized protein LOC100781076 [Gl	0.719	0.692	0.646	3e-65
297818234	280	shikimate kinase family protein [Arabido	0.805	0.8	0.564	4e-65
147798826	460	hypothetical protein VITISV_006589 [Viti	0.723	0.436	0.498	2e-59

>gi|449464238|ref|XP_004149836.1| PREDICTED: shikimate kinase, chloroplastic-like [Cucumis sativus] gi|449522321|ref|XP_004168175.1| PREDICTED: shikimate kinase, chloroplastic-like [Cucumis sativus]

 Score =  276 bits (707), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 141/230 (61%), Positives = 174/230 (75%), Gaps = 13/230 (5%)

Query: 43  LQYSIISRKPRITTRSIADDTTS-NTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGM 101
           +Q S I R+  + +  +A D T+ N   KV  +D S  VKKKA D++ ELKGTS+FLVG+
Sbjct: 56  IQSSAIRRRRSLPSSCLASDGTALNVEAKVTVDDLSLEVKKKAMDVAPELKGTSIFLVGI 115

Query: 102 NNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLS 161
           N++IKT LGK LAD LRYYYFDSDSLV E +GGE+AAK +++SDEKG+Q  ETEVLKQLS
Sbjct: 116 NSSIKTKLGKLLADVLRYYYFDSDSLVVEVSGGEAAAKLYKQSDEKGFQAFETEVLKQLS 175

Query: 162 SMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVA------RMDHSGF------PE 209
           SMGRLVVCAGNGAVQSS NLALLRHGI+LWID+P  M+A      R  H  F        
Sbjct: 176 SMGRLVVCAGNGAVQSSTNLALLRHGITLWIDLPLQMIAEEFAEDRSQHPVFDISTSGSY 235

Query: 210 SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLE 259
           SEVL Q+ +LY++++DGYATAD  +SLQK+AS+LGYDD +AVTTEDM +E
Sbjct: 236 SEVLGQITSLYQKVKDGYATADALISLQKLASKLGYDDFNAVTTEDMAME 285

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451543|ref|XP_002273840.1| PREDICTED: shikimate kinase, chloroplastic [Vitis vinifera] gi|296082301|emb|CBI21306.3| unnamed protein product [Vitis vinifera]

 Score =  273 bits (699), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 143/222 (64%), Positives = 167/222 (75%), Gaps = 17/222 (7%)

Query: 56  TRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLAD 115
           T S+ D  +S + TKV   D S AVKKKA +IS  LKGTS+FLVGMN+ IKT++GK LAD
Sbjct: 63  TFSLPDGASSISATKVVDVDLSLAVKKKAMEISPVLKGTSIFLVGMNSTIKTNVGKLLAD 122

Query: 116 ALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAV 175
           ALRYY+FDSDSLV EA GGESAAK+ +E DEKG+  +ETEVLKQLSSMGRLVVCAG+G V
Sbjct: 123 ALRYYHFDSDSLVEEACGGESAAKSLKEQDEKGFHDSETEVLKQLSSMGRLVVCAGDGLV 182

Query: 176 QSSANLALLRHGISLWIDVPPGMVAR-MDHSGFP----------------ESEVLPQLFA 218
           QSS NLALLRHGIS+WIDVP  MVA+ M   G                  +++V  QL  
Sbjct: 183 QSSTNLALLRHGISIWIDVPIEMVAKNMIEEGVQIPVTELSTAESYSETGDNQVFAQLAV 242

Query: 219 LYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEV 260
           +Y+EM+ GYATAD +VSLQKVASQLGYDDLDAVTTEDM +EV
Sbjct: 243 VYEEMKGGYATADASVSLQKVASQLGYDDLDAVTTEDMAMEV 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543635|ref|XP_002512880.1| protein with unknown function [Ricinus communis] gi|223547891|gb|EEF49383.1| protein with unknown function [Ricinus communis]

 Score =  272 bits (696), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 146/241 (60%), Positives = 178/241 (73%), Gaps = 7/241 (2%)

Query: 27  PFSLLH--SQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSFAVKKKA 84
           P  LLH  +QS     T +++     +P ++T     D T+ + T+V   D S A+KK+A
Sbjct: 31  PSCLLHIRAQSSHSFSTLIKHKSQFYRPSLSTTCSLSDETTTSTTEVTVLDSSLALKKRA 90

Query: 85  ADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRES 144
           ADIS ELKGTS+FLVGM +++KT LGK LAD+LRYYYFDSDSLV E A G SAAK+F+E+
Sbjct: 91  ADISPELKGTSIFLVGMRSSMKTSLGKLLADSLRYYYFDSDSLVEEVASGASAAKSFKET 150

Query: 145 DEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-- 202
           DEKG++++ETEVLKQLSSMGRLVVCAG+GAVQS  NLALLRHGISLWIDVP  MVA+   
Sbjct: 151 DEKGFRESETEVLKQLSSMGRLVVCAGDGAVQSFTNLALLRHGISLWIDVPLDMVAQAMS 210

Query: 203 ---DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLE 259
              D     +SE L +L A ++ MR GYATAD T+SLQKVA  LGYD LD+VT EDMTLE
Sbjct: 211 EESDQLSGADSEELTELIATFEAMRGGYATADATISLQKVAVNLGYDALDSVTAEDMTLE 270

Query: 260 V 260
           V
Sbjct: 271 V 271

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129236|ref|XP_002328924.1| shikimate kinase [Populus trichocarpa] gi|222839354|gb|EEE77691.1| shikimate kinase [Populus trichocarpa]

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 139/225 (61%), Positives = 177/225 (78%), Gaps = 9/225 (4%)

Query: 44  QYSIISRKPRIT-TRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMN 102
           ++ ++SR   +T T S+ ++TT++T TKVA  D S  VKK+AAD+S ELKGTS+FL+GM 
Sbjct: 42  KFPLVSRPTSLTATCSLPNETTTST-TKVAGADTSLQVKKRAADLSPELKGTSIFLLGMR 100

Query: 103 NAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSS 162
             +KT+LGK LADALRYY+F+SDSLV EAAGGE AA++ +E DEKG++++ETEVLKQL+S
Sbjct: 101 GPLKTNLGKLLADALRYYFFNSDSLVEEAAGGEFAARSLKERDEKGFRESETEVLKQLTS 160

Query: 163 MGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVAR---MDHSGFP----ESEVLPQ 215
           MGRLVVCAG+GAVQSS NL LLRHGISLWIDVP  +VAR    D +        SEVL Q
Sbjct: 161 MGRLVVCAGDGAVQSSTNLGLLRHGISLWIDVPLDIVARGVVEDKTQLAASESHSEVLEQ 220

Query: 216 LFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEV 260
           + A Y+E+R GYATAD  +SLQ +A +LGYD+LD+VTTED+ LEV
Sbjct: 221 VVATYEELRAGYATADAKISLQNIAVKLGYDELDSVTTEDLALEV 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510864|gb|AFK43498.1| unknown [Lotus japonicus]

 Score =  270 bits (689), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 145/235 (61%), Positives = 171/235 (72%), Gaps = 16/235 (6%)

Query: 28  FSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADI 87
           F  LH++        LQ+    R P IT  SI      ++V+ V A D S AVKKKAAD+
Sbjct: 37  FPTLHARP-----NPLQFR---RPPPITNCSIP-----SSVSNVGATDLSLAVKKKAADV 83

Query: 88  STELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEK 147
           S EL+GTS+FLVGM  ++KT LGK L +ALRYYYFDSDSLV EA GG SAA + R+SDEK
Sbjct: 84  SPELRGTSIFLVGMKGSLKTSLGKLLVEALRYYYFDSDSLVEEALGGVSAANSVRQSDEK 143

Query: 148 GYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVAR---MDH 204
           G+ ++ETEVLKQLSSMGRLVVCAGNGAVQS  NLALLRHGISLWIDVP  +VAR    D 
Sbjct: 144 GFSESETEVLKQLSSMGRLVVCAGNGAVQSKTNLALLRHGISLWIDVPLDIVARDVIEDQ 203

Query: 205 SGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLE 259
           S F   E + +L ALY + +DGYATAD  +SLQKVAS+LGYD+LD +T EDM LE
Sbjct: 204 SQFAAFEEVNELGALYNKYKDGYATADAIISLQKVASRLGYDNLDDITKEDMALE 258

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30688547|ref|NP_189325.2| shikimate kinase like 1 [Arabidopsis thaliana] gi|186510473|ref|NP_001118711.1| shikimate kinase like 1 [Arabidopsis thaliana] gi|186510475|ref|NP_001118712.1| shikimate kinase like 1 [Arabidopsis thaliana] gi|75274423|sp|Q9LW20.1|SKL1_ARATH RecName: Full=Probable inactive shikimate kinase like 1, chloroplastic; Short=AtSKL1; Flags: Precursor gi|9279680|dbj|BAB01237.1| unnamed protein product [Arabidopsis thaliana] gi|45752658|gb|AAS76227.1| At3g26900 [Arabidopsis thaliana] gi|46402442|gb|AAS92323.1| At3g26900 [Arabidopsis thaliana] gi|227202866|dbj|BAH56906.1| AT3G26900 [Arabidopsis thaliana] gi|332643714|gb|AEE77235.1| shikimate kinase like 1 [Arabidopsis thaliana] gi|332643715|gb|AEE77236.1| shikimate kinase like 1 [Arabidopsis thaliana] gi|332643716|gb|AEE77237.1| shikimate kinase like 1 [Arabidopsis thaliana]

 Score =  257 bits (656), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 138/265 (52%), Positives = 188/265 (70%), Gaps = 11/265 (4%)

Query: 1   MEIIAGTTATTMATQSITPKGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRIT-TRSI 59
           MEI + + + T+      P+ L    P +   +    P+ +S    +IS   RI  +RS+
Sbjct: 1   MEIFSASASLTLT--GFVPRLLPLLSPQA--RTTLCKPLLSSSSTRLISCHSRIAPSRSL 56

Query: 60  ADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRY 119
           AD + S  ++ V   DP   VK+KA DI+ ELKG S+FLVG+NN+IKT+ GK LA+ALRY
Sbjct: 57  ADQSASTGIS-VVDSDPIDVVKRKAMDIAPELKGASIFLVGINNSIKTNTGKLLAEALRY 115

Query: 120 YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSA 179
           YYFDSD+L+ EAAGG  +A+A +E+DEK +Q++ETEVLKQLSSMGRLVVCAG+GAVQS  
Sbjct: 116 YYFDSDNLITEAAGGNVSAQALKEADEKAFQESETEVLKQLSSMGRLVVCAGDGAVQSLR 175

Query: 180 NLALLRHGISLWIDVPPGMVARMDHSGFPESEVLPQLF----ALYKEMRDGYATADVTVS 235
           NLALLRHGIS+WIDVP  + A+ D   F  SE  P+LF    A Y++ R GY TADV++S
Sbjct: 176 NLALLRHGISIWIDVPLDITAKGDDDSF-HSEPSPELFDTLKASYEKSRKGYETADVSIS 234

Query: 236 LQKVASQLGYDDLDAVTTEDMTLEV 260
           L+K+A++L ++DL+AVT+ED+ LE+
Sbjct: 235 LEKIATKLEFEDLEAVTSEDIALEI 259

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498875|ref|XP_003518273.1| PREDICTED: shikimate kinase, chloroplastic [Glycine max]

 Score =  256 bits (655), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 137/214 (64%), Positives = 161/214 (75%), Gaps = 15/214 (7%)

Query: 58  SIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117
           S++D T S+++    A D S AVKKKAA++S+ELKGTS+FLVG+ +++KT LGK LADAL
Sbjct: 48  SVSDGTVSSSL---GATDSSLAVKKKAAEVSSELKGTSIFLVGLKSSLKTSLGKLLADAL 104

Query: 118 RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQS 177
           RYYYFDSDSLV EA GG  AAK+FRESDEKG+ ++ETEVLKQLSSMGRLVVCAGNG V S
Sbjct: 105 RYYYFDSDSLVEEAVGGALAAKSFRESDEKGFYESETEVLKQLSSMGRLVVCAGNGTVTS 164

Query: 178 SANLALLRHGISLWIDVPPGMVAR---MDHSGFPES---------EVLPQLFALYKEMRD 225
           S NLALLRHGISLWIDVP   VAR    D S F  S         EV  +L ALY + R 
Sbjct: 165 STNLALLRHGISLWIDVPLDFVARDVIEDKSQFAPSEISISGSYPEVQDELGALYDKYRV 224

Query: 226 GYATADVTVSLQKVASQLGYDDLDAVTTEDMTLE 259
           GYATAD  +S+QKV S+LG D+LD +T EDM LE
Sbjct: 225 GYATADAIISVQKVVSRLGCDNLDEITREDMALE 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249076|ref|NP_001239733.1| uncharacterized protein LOC100781076 [Glycine max] gi|255640183|gb|ACU20382.1| unknown [Glycine max]

 Score =  254 bits (649), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 137/212 (64%), Positives = 160/212 (75%), Gaps = 12/212 (5%)

Query: 58  SIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117
           S++D T  ++V   A +  S AVKKKAA++S+ELKGTS+FLVG+ ++ KT LGK LADAL
Sbjct: 58  SVSDGTVPSSVG--ATDSSSLAVKKKAAEVSSELKGTSIFLVGLKSSFKTSLGKLLADAL 115

Query: 118 RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQS 177
           RYYYFDSD+LV EA GG  AAK+FRESDEKG+ + ETEVLKQLSSMGRLVVCAGNGAV S
Sbjct: 116 RYYYFDSDNLVEEAVGGALAAKSFRESDEKGFYECETEVLKQLSSMGRLVVCAGNGAVTS 175

Query: 178 SANLALLRHGISLWIDVPPGMVAR---MDHSGFPESEV-----LP--QLFALYKEMRDGY 227
           S NLALLRHGISLWIDVP   VAR    D S F  SE+      P  +L ALY   R GY
Sbjct: 176 STNLALLRHGISLWIDVPLDFVARDVIEDQSQFAPSELSISGSYPEDELGALYDRYRVGY 235

Query: 228 ATADVTVSLQKVASQLGYDDLDAVTTEDMTLE 259
           ATAD  +S+QKVAS+LG D+LD +T EDM LE
Sbjct: 236 ATADAIISVQKVASRLGCDNLDEITREDMALE 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818234|ref|XP_002877000.1| shikimate kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297322838|gb|EFH53259.1| shikimate kinase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 131/232 (56%), Positives = 174/232 (75%), Gaps = 8/232 (3%)

Query: 35  SYAPI-RTSLQYSIISRKPRIT-TRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELK 92
           SY P+  +S    +IS   RI  ++S+AD + S  ++ V   DP   VK+KA DI+ ELK
Sbjct: 30  SYKPLLSSSFSNRLISSHSRIAPSQSLADQSASTGIS-VVDSDPIDVVKRKAMDIAPELK 88

Query: 93  GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQA 152
           G S+FLVG+NN+IKT+ GK LA+ALRYYYFDSD+L+ EAAGG  +A+A +E+DEK +Q++
Sbjct: 89  GASIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEAAGGNVSAQALKEADEKAFQES 148

Query: 153 ETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDHSGFPESEV 212
           ETEVLKQLSSMGRLVVCAG+GAVQS  NLALLRHGIS+WIDVP  + A+ D   F  SE 
Sbjct: 149 ETEVLKQLSSMGRLVVCAGDGAVQSLTNLALLRHGISIWIDVPLDIAAKGDDDSF-NSEP 207

Query: 213 LPQLF----ALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEV 260
            P+LF    A Y++ R GY TAD ++SL+K+A++L ++DL+AV +ED+ LEV
Sbjct: 208 SPELFDTLKASYEKSRKGYETADASISLEKIATKLEFEDLEAVASEDIALEV 259

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798826|emb|CAN61068.1| hypothetical protein VITISV_006589 [Vitis vinifera]

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 140/281 (49%), Positives = 164/281 (58%), Gaps = 80/281 (28%)

Query: 56  TRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLAD 115
           T S+ D  +S + TKV   D S AVKKKA +IS  LKGTS+FLVGMN+ IKT++GK LAD
Sbjct: 63  TFSLPDGASSISATKVVDVDLSLAVKKKAMEISPVLKGTSIFLVGMNSTIKTNVGKLLAD 122

Query: 116 ALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAE---------------------- 153
           ALRYY+FDSDSLV EA GGESAAK+ +E DEKG+  +E                      
Sbjct: 123 ALRYYHFDSDSLVEEACGGESAAKSLKEQDEKGFHDSEVILLDFYPVACVSAYLCTGLGT 182

Query: 154 -----TEVLKQLSSMGRLVVCAGNGAVQSSANL--------------------------- 181
                TEVLKQLSSMGRLVVCAG+G VQSS NL                           
Sbjct: 183 GIVKLTEVLKQLSSMGRLVVCAGDGLVQSSTNLYGNRFLVFLFLMLRQVICYGQNQFSYP 242

Query: 182 ---------ALLRHGISLWIDVPPGMVARM-----------------DHSGFPESEVLPQ 215
                    ALLRHGIS+WIDVP  MVA+                   +S   +++V  Q
Sbjct: 243 QPSSLNNDRALLRHGISIWIDVPIEMVAKNMIEEGVQIPVTELSTAESYSETGDNQVFAQ 302

Query: 216 LFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDM 256
           L  +Y+EM+ GYATAD +VSLQKVASQLGYDDLDAVTTEDM
Sbjct: 303 LAVVYEEMKGGYATADASVSLQKVASQLGYDDLDAVTTEDM 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	278
TAIR|locus:2088469	280	SKL1 "shikimate kinase-like 1"	0.794	0.789	0.574	4.8e-62
UNIPROTKB|Q5NTH4	308	SK1 "Shikimate kinase 1, chlor	0.665	0.600	0.368	1.5e-28
UNIPROTKB|Q5NTH3	307	SK2 "Shikimate kinase 2, chlor	0.665	0.602	0.363	6.4e-28
UNIPROTKB|Q7X7H9	287	SK3 "Shikimate kinase 3, chlor	0.665	0.644	0.363	2.8e-27
TAIR|locus:2052586	304	SK1 "shikimate kinase 1" [Arab	0.838	0.766	0.308	7.6e-25
TIGR_CMR|GSU_2026	175	GSU_2026 "shikimate kinase" [G	0.525	0.834	0.303	1.1e-09
UNIPROTKB|Q9KNV1	174	aroK "Shikimate kinase" [Vibri	0.525	0.839	0.294	6.9e-08
TIGR_CMR|VC_2629	174	VC_2629 "shikimate kinase" [Vi	0.525	0.839	0.294	6.9e-08
TIGR_CMR|SPO_1634	195	SPO_1634 "shikimate kinase" [R	0.5	0.712	0.294	1.5e-07
TIGR_CMR|DET_0464	176	DET_0464 "shikimate kinase" [D	0.5	0.789	0.277	2.1e-07

TAIR|locus:2088469 SKL1 "shikimate kinase-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 131/228 (57%), Positives = 174/228 (76%)

Query:    38 PIRTSLQYSIISRKPRIT-TRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSV 96
             P+ +S    +IS   RI  +RS+AD + S  ++ V   DP   VK+KA DI+ ELKG S+
Sbjct:    34 PLLSSSSTRLISCHSRIAPSRSLADQSASTGIS-VVDSDPIDVVKRKAMDIAPELKGASI 92

Query:    97 FLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEV 156
             FLVG+NN+IKT+ GK LA+ALRYYYFDSD+L+ EAAGG  +A+A +E+DEK +Q++ETEV
Sbjct:    93 FLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEAAGGNVSAQALKEADEKAFQESETEV 152

Query:   157 LKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDHSGFPESEVLPQL 216
             LKQLSSMGRLVVCAG+GAVQS  NLALLRHGIS+WIDVP  + A+ D   F  SE  P+L
Sbjct:   153 LKQLSSMGRLVVCAGDGAVQSLRNLALLRHGISIWIDVPLDITAKGDDDSF-HSEPSPEL 211

Query:   217 F----ALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEV 260
             F    A Y++ R GY TADV++SL+K+A++L ++DL+AVT+ED+ LE+
Sbjct:   212 FDTLKASYEKSRKGYETADVSISLEKIATKLEFEDLEAVTSEDIALEI 259

GO:0004765 "shikimate kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA;TAS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006520 "cellular amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q5NTH4 SK1 "Shikimate kinase 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 73/198 (36%), Positives = 115/198 (58%)

Query:    75 DPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG 134
             D +  +K+K+ ++   L G  ++LVGM  + K+ +GK +++ L Y +FDSD LV +A G 
Sbjct:    78 DEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVGKIMSEVLGYSFFDSDKLVEQAVGM 137

Query:   135 ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDV 194
              S A+ F+   E  ++  E+ VL+ LSSM RLVV  G GAV    N   ++ G+S+W+DV
Sbjct:   138 PSVAQIFKVHSEAFFRDNESSVLRDLSSMKRLVVATGGGAVIRPVNWKYMKKGLSVWLDV 197

Query:   195 PPGMVAR------------MDH-SGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVAS 241
             P   +AR            +D  SG P +    +L  L ++  D YA ADV VSL+++AS
Sbjct:   198 PLDALARRIAKVGTASRPLLDQPSGDPYTMAFSKLSMLAEQRGDAYANADVRVSLEEIAS 257

Query:   242 QLGYDDLDAVTTEDMTLE 259
             + G+DD+  +T  D+ +E
Sbjct:   258 KQGHDDVSKLTPTDIAIE 275

GO:0004765 "shikimate kinase activity" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0019632 "shikimate metabolic process" evidence=IDA

UNIPROTKB|Q5NTH3 SK2 "Shikimate kinase 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 72/198 (36%), Positives = 113/198 (57%)

Query:    75 DPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG 134
             D +  +K+K+ ++   L G  ++LVGM  + K+ + K LA+ L Y +FDSD LV +A G 
Sbjct:    76 DEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVAKILAEVLGYSFFDSDKLVEQAVGM 135

Query:   135 ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDV 194
              S A+ F+E  E  ++  E+ VL+ LSSM RLVV  G GAV    N   ++ G+S+W+DV
Sbjct:   136 PSVAQIFKEHSEAFFRDNESSVLRDLSSMRRLVVATGGGAVIRPVNWKYMKKGLSVWLDV 195

Query:   195 PPGMVAR------------MDH-SGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVAS 241
             P   +AR            +D  S  P +    +L  L ++  D YA AD  VSL+++A+
Sbjct:   196 PLDALARRIAQVGTASRPLLDQPSSDPYTAAFSKLSMLAEQRGDAYANADARVSLEEIAA 255

Query:   242 QLGYDDLDAVTTEDMTLE 259
             + G+DD+  +T  D+ +E
Sbjct:   256 KQGHDDVSKLTPTDIAIE 273

GO:0004765 "shikimate kinase activity" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0019632 "shikimate metabolic process" evidence=IDA

UNIPROTKB|Q7X7H9 SK3 "Shikimate kinase 3, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 72/198 (36%), Positives = 111/198 (56%)

Query:    75 DPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG 134
             D +  +K+KA D+   L    ++LVGM  + KT +GK LA+ L Y +FDSD LV +A G 
Sbjct:    73 DEALVLKQKAEDVVPYLNDRCIYLVGMMGSGKTTVGKILAEVLGYSFFDSDKLVEKAVGI 132

Query:   135 ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDV 194
              S A+ F+   E  ++  E+EVL+ LSSM RLVV  G GAV    N + ++ G ++W+DV
Sbjct:   133 SSVAEIFQLHSEAFFRDNESEVLRDLSSMHRLVVATGGGAVIRPINWSYMKKGSTIWLDV 192

Query:   195 PPGMVARM-------------DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVAS 241
             P   +AR                SG P ++   +L AL+++  D YA AD  VSL+ +A 
Sbjct:   193 PLDALARRIAAVGTASRPLLHQESGDPYAKAYAKLTALFEQRMDSYANADARVSLEHIAV 252

Query:   242 QLGYDDLDAVTTEDMTLE 259
             + G+ ++  +T   + +E
Sbjct:   253 KQGHSNVTTLTPSAIAIE 270

GO:0004765 "shikimate kinase activity" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0019632 "shikimate metabolic process" evidence=IDA

TAIR|locus:2052586 SK1 "shikimate kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 78/253 (30%), Positives = 128/253 (50%)

Query:    22 LKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDP--SFA 79
             +K D  F  L      P R + Q   +S  P +   S +D+ +S  + +  +  P     
Sbjct:    35 VKVDRRFRGLSLARLQPERRNDQRRAVS--PAV---SCSDNNSSGALLETGSVYPFDEDI 89

Query:    80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAK 139
             +K+KA ++   L G S++LVGM  + KT +GK ++  L Y +FD D+L+ +A  G S A+
Sbjct:    90 LKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAE 149

Query:   140 AFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMV 199
              F    E  ++  ET+ LK+LSS  ++VV  G GAV    N   +  GIS+W+DVP   +
Sbjct:   150 IFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEAL 209

Query:   200 ARM-------------DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYD 246
             A               D SG   S    +L A++ E  + Y  A+  VSL+ +A++ GY 
Sbjct:   210 AHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYK 269

Query:   247 DLDAVTTEDMTLE 259
             ++  +T  ++ +E
Sbjct:   270 NVSDLTPTEIAIE 282

GO:0004765 "shikimate kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;TAS

GO:0019632 "shikimate metabolic process" evidence=IDA

GO:0006744 "ubiquinone biosynthetic process" evidence=RCA

TIGR_CMR|GSU_2026 GSU_2026 "shikimate kinase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 143 (55.4 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 47/155 (30%), Positives = 73/155 (47%)

Query:    87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE 146
             +S    G +V L G     K+ +GK LA  L Y + D D+L+ E AG  S  + F    E
Sbjct:     1 MSVPSDGRNVVLTGFMGTGKSTVGKLLARRLGYRFSDLDALIVERAG-ISINEIFERYGE 59

Query:   147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDH-S 205
             + +++ ETE ++ L  +   VV  G GAV +  N  LLR    L +++   +   +    
Sbjct:    60 QRFRELETEAIRSLGGVSGRVVATGGGAVIAPRNRVLLREA-GLVVNLTASLEVILSRLK 118

Query:   206 GFPESEVL-----PQ-LFALYKEMRDGYATADVTV 234
             G  E  +L     P+ L AL     + YA AD+ +
Sbjct:   119 GDRERPLLKSNNTPEALAALMTARENAYADADLRI 153

GO:0004765 "shikimate kinase activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

UNIPROTKB|Q9KNV1 aroK "Shikimate kinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 127 (49.8 bits), Expect = 6.9e-08, P = 6.9e-08
 Identities = 48/163 (29%), Positives = 79/163 (48%)

Query:    95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
             ++FLVG   A K+ +G+ LA  L   + DSD+++ E  G +  A  F    E+G+++ E 
Sbjct:     6 NIFLVGPMGAGKSTIGRHLAQQLHMEFIDSDTVIEERTGAD-IAWVFDVEGEEGFRKREE 64

Query:   155 EVLKQLSSMGRLVVCAGNGAVQSSANL-ALLRHGISLWIDVP-PGMVARMDH-------- 204
              V+  L+    +V+  G G+V S  N   L   GI ++++      +AR +         
Sbjct:    65 AVINDLTEQQGIVLATGGGSVISKENRNRLSARGIVVYLETTIEKQLARTNRDKKRPLLQ 124

Query:   205 SGFPESEVLPQLFA----LYKEMRDGYATADVTVSLQKVASQL 243
             +  P  EVL QL      LY+E+ D     D   S + VA+Q+
Sbjct:   125 TDCPR-EVLEQLAEDRNPLYEEIADITVRTD-DQSAKVVANQI 165

GO:0004765 "shikimate kinase activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|VC_2629 VC_2629 "shikimate kinase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 127 (49.8 bits), Expect = 6.9e-08, P = 6.9e-08
 Identities = 48/163 (29%), Positives = 79/163 (48%)

Query:    95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
             ++FLVG   A K+ +G+ LA  L   + DSD+++ E  G +  A  F    E+G+++ E 
Sbjct:     6 NIFLVGPMGAGKSTIGRHLAQQLHMEFIDSDTVIEERTGAD-IAWVFDVEGEEGFRKREE 64

Query:   155 EVLKQLSSMGRLVVCAGNGAVQSSANL-ALLRHGISLWIDVP-PGMVARMDH-------- 204
              V+  L+    +V+  G G+V S  N   L   GI ++++      +AR +         
Sbjct:    65 AVINDLTEQQGIVLATGGGSVISKENRNRLSARGIVVYLETTIEKQLARTNRDKKRPLLQ 124

Query:   205 SGFPESEVLPQLFA----LYKEMRDGYATADVTVSLQKVASQL 243
             +  P  EVL QL      LY+E+ D     D   S + VA+Q+
Sbjct:   125 TDCPR-EVLEQLAEDRNPLYEEIADITVRTD-DQSAKVVANQI 165

GO:0004765 "shikimate kinase activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|SPO_1634 SPO_1634 "shikimate kinase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 134 (52.2 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 43/146 (29%), Positives = 72/146 (49%)

Query:    95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
             +V +VGM  A KT +G+ LA  L   + DSD+ + E+A   S  + F    E  ++  E+
Sbjct:    22 TVVMVGMMGAGKTAVGRALAQRLGVPFLDSDAEI-ESAANMSIPEIFERDGEAFFRDRES 80

Query:   155 EVLKQLSSMGRLVVCAGNGAVQSSANLALL-RHGISLWIDVPPGMV-ARMDHSGF-P--- 208
              V+ +L      V+  G GA  + AN  ++  HG+S+W+     ++  R+ H    P   
Sbjct:    81 RVIARLLEGAPCVLSTGGGAFLAEANRRMISEHGVSVWLKADLTVLWNRVRHKDTRPLLR 140

Query:   209 ESEVLPQLFALYKEMRDGYATADVTV 234
              ++    L ALY+     Y+ AD+ V
Sbjct:   141 TADPRATLRALYEARVPLYSEADLCV 166

GO:0004765 "shikimate kinase activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|DET_0464 DET_0464 "shikimate kinase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 127 (49.8 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 41/148 (27%), Positives = 78/148 (52%)

Query:    95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
             ++ L+G   A K+ + K L++ L      +D+ + E   G S    F+E  E  ++Q E+
Sbjct:     6 NIALIGFMGAGKSSVSKLLSERLGKTLVSTDACI-ETREGLSIISIFKEKGEDYFRQMES 64

Query:   155 EVLKQLSSM-GRLVVCAGNGAVQSSANLALLR-HGISLWIDV-PPGMVARM-DHSGFP-- 208
              VL+ L    G+++ C G G V    NL+L+R + + ++++  P  + AR+ +H+  P  
Sbjct:    65 RVLEDLCRQSGQIIDCGG-GIVMRPPNLSLMRLNCLVIYLESRPEDLEARLKNHTNRPLY 123

Query:   209 ESEVLPQLFALYKEMRDGY-ATADVTVS 235
              +E L ++  L +     Y A A++T+S
Sbjct:   124 NAERLDKMLKLLESRLPLYRAAANITIS 151

GO:0004765 "shikimate kinase activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LW20	SKL1_ARATH	No assigned EC number	0.5207	0.9136	0.9071	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	0.691
4th Layer	2.7.1.71	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00037913001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (231 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00026409001	RecName- Full=3-phosphoshikimate 1-carboxyvinyltransferase; EC=2.5.1.19; (521 aa)	•					•	•		0.929
	GSVIVG00019835001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (495 aa)	•					•			0.901
	GSVIVG00008901001	SubName- Full=Chromosome chr14 scaffold_211, whole genome shotgun sequence; (490 aa)						•			0.899
	GSVIVG00008900001	SubName- Full=Chromosome chr14 scaffold_211, whole genome shotgun sequence; (502 aa)						•			0.899
	GSVIVG00008899001	SubName- Full=Chromosome chr14 scaffold_211, whole genome shotgun sequence; (519 aa)						•			0.899
	GSVIVG00036740001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (456 aa)	•			•			•		0.656

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	278
PLN02199	303	PLN02199, PLN02199, shikimate kinase	6e-31
cd00464	154	cd00464, SK, Shikimate kinase (SK) is the fifth en	4e-28
pfam01202	158	pfam01202, SKI, Shikimate kinase	1e-22
PRK00131	175	PRK00131, aroK, shikimate kinase; Reviewed	2e-18
COG0703	172	COG0703, AroK, Shikimate kinase [Amino acid transp	3e-16
PRK13946	184	PRK13946, PRK13946, shikimate kinase; Provisional	5e-10
PRK13951	488	PRK13951, PRK13951, bifunctional shikimate kinase/	9e-09
PRK03731	171	PRK03731, aroL, shikimate kinase II; Reviewed	2e-08
PRK13947	171	PRK13947, PRK13947, shikimate kinase; Provisional	1e-07
PRK13949	169	PRK13949, PRK13949, shikimate kinase; Provisional	2e-07
PRK05057	172	PRK05057, aroK, shikimate kinase I; Reviewed	2e-06
PRK00625	173	PRK00625, PRK00625, shikimate kinase; Provisional	4e-06
PRK13948	182	PRK13948, PRK13948, shikimate kinase; Provisional	7e-06

>gnl|CDD|177850 PLN02199, PLN02199, shikimate kinase

 Score =  116 bits (292), Expect = 6e-31
 Identities = 65/193 (33%), Positives = 105/193 (54%), Gaps = 13/193 (6%)

Query: 80  VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAK 139
           +K+KA ++   L G S++LVGM  + KT +GK ++  L Y +FD D+L+ +A  G S A+
Sbjct: 89  LKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAE 148

Query: 140 AFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMV 199
            F    E  ++  ET+ LK+LSS  ++VV  G GAV    N   +  GIS+W+DVP   +
Sbjct: 149 IFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEAL 208

Query: 200 ARM-------------DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYD 246
           A               D SG   S    +L A++ E  + Y  A+  VSL+ +A++ GY 
Sbjct: 209 AHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYK 268

Query: 247 DLDAVTTEDMTLE 259
           ++  +T  ++ +E
Sbjct: 269 NVSDLTPTEIAIE 281

Length = 303

>gnl|CDD|238260 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

 Score =  104 bits (263), Expect = 4e-28
 Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 7/147 (4%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
           ++ L+GM  A KT +G+ LA AL   + D D L  E   G S  + F E  E+G+++ E 
Sbjct: 1   NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDEL-IEQRAGMSIPEIFAEEGEEGFRELER 59

Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANL-ALLRHGISLWIDVPP----GMVARMDHSGFPE 209
           EVL  L +    V+  G GAV    N   LL +GI +W+D  P      +AR       +
Sbjct: 60  EVLLLLLTKENAVIATGGGAVLREENRRLLLENGIVVWLDASPEELLERLARDKTRPLLQ 119

Query: 210 SEVLPQLFALYKEMRDGYA-TADVTVS 235
            E   +L  L +E    Y   AD+T+ 
Sbjct: 120 DEDPERLRELLEEREPLYREVADLTID 146

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP. Length = 154

>gnl|CDD|216360 pfam01202, SKI, Shikimate kinase

 Score = 91.1 bits (227), Expect = 1e-22
 Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 2/94 (2%)

Query: 104 AIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSM 163
           A K+ +G+ LA AL   + D+D    E   G S A+ F E  E+G+++ E+EVLK+L + 
Sbjct: 3   AGKSTIGRLLAKALGLPFIDTDQE-IEKRTGMSIAEIFEEEGEEGFRRLESEVLKELLAE 61

Query: 164 GRLVVCAGNGAVQSSANLALLR-HGISLWIDVPP 196
              V+  G GAV S  N ALL+ +GI +++D  P
Sbjct: 62  HNAVIATGGGAVLSEENRALLKENGIVVYLDADP 95

Length = 158

>gnl|CDD|234654 PRK00131, aroK, shikimate kinase; Reviewed

 Score = 80.2 bits (199), Expect = 2e-18
 Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 27/172 (15%)

Query: 91  LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ 150
           LKG ++ L+G   A K+ +G+ LA  L Y + D+D L+ EA  G+S  + F E  E  ++
Sbjct: 2   LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLI-EARAGKSIPEIFEEEGEAAFR 60

Query: 151 QAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPG-MVARMDHS--- 205
           + E EVL +L +   LV+  G GAV    N ALLR  G  +++D     ++ R+      
Sbjct: 61  ELEEEVLAELLARHNLVISTGGGAVLREENRALLRERGTVVYLDASFEELLRRLRRDRNR 120

Query: 206 -----GFPESEVLPQLFA----LYKEMRDGYATADVTV-----SLQKVASQL 243
                  P+ E L  L+     LY+E       AD+TV     S ++V +++
Sbjct: 121 PLLQTNDPK-EKLRDLYEERDPLYEE------VADITVETDGRSPEEVVNEI 165

Length = 175

>gnl|CDD|223775 COG0703, AroK, Shikimate kinase [Amino acid transport and metabolism]

 Score = 74.2 bits (183), Expect = 3e-16
 Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 2/103 (1%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
           ++ L+G   A K+ +G+ LA AL   + D+D  + E   G S A+ F E  E+G+++ ET
Sbjct: 4   NIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEI-EKRTGMSIAEIFEEEGEEGFRRLET 62

Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPP 196
           EVLK+L      V+  G GAV S  N  LL+  GI +++D P 
Sbjct: 63  EVLKELLEEDNAVIATGGGAVLSEENRNLLKKRGIVVYLDAPF 105

Length = 172

>gnl|CDD|184411 PRK13946, PRK13946, shikimate kinase; Provisional

 Score = 57.2 bits (139), Expect = 5e-10
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 15/167 (8%)

Query: 84  AADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRE 143
                  L   +V LVG+  A K+ +G+ LA  L   + D+D+ + E A   + A+ F  
Sbjct: 1   EERARAALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEI-ERAARMTIAEIFAA 59

Query: 144 SDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLW----IDVPPGM 198
             E  ++  E  V+ +L   G LV+  G GA  +    A +   GIS+W    +DV    
Sbjct: 60  YGEPEFRDLERRVIARLLKGGPLVLATGGGAFMNEETRAAIAEKGISVWLKADLDVLWER 119

Query: 199 VARMDH-----SGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVA 240
           V+R D      +  P+ E L     L +E    YA AD+TV+ + V 
Sbjct: 120 VSRRDTRPLLRTADPK-ETLA---RLMEERYPVYAEADLTVASRDVP 162

Length = 184

>gnl|CDD|172457 PRK13951, PRK13951, bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

 Score = 55.7 bits (134), Expect = 9e-09
 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 1/101 (0%)

Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
           +FLVGM  + K+ +GK +++ L   + D D  + E   G S  + F E  E+ ++  E E
Sbjct: 3   IFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEI-ERREGRSVRRIFEEDGEEYFRLKEKE 61

Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPP 196
           +L++L     +VV  G G V    N  LL+   +L++  PP
Sbjct: 62  LLRELVERDNVVVATGGGVVIDPENRELLKKEKTLFLYAPP 102

Length = 488

>gnl|CDD|235153 PRK03731, aroL, shikimate kinase II; Reviewed

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 32/170 (18%)

Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
           +FLVG     KT +G  LA AL Y + D+D  +   +    A    RE    G++  E+ 
Sbjct: 5   LFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWA-GFRARESA 63

Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPG-MVARMDHSGFPE---- 209
            L+ +++    V+  G G + +  N   +R +GI +++  P   +  R+     PE    
Sbjct: 64  ALEAVTAPST-VIATGGGIILTEENRHFMRNNGIVIYLCAPVSVLANRL--EANPEEDQR 120

Query: 210 ------------SEVLPQLFALYKEMRDGYATA----DVTVSLQKVASQL 243
                       +EVL +  ALY+E       A    D T    +V S++
Sbjct: 121 PTLTGKPISEEVAEVLAEREALYRE------VAHHIIDATQPPSQVVSEI 164

Length = 171

>gnl|CDD|184412 PRK13947, PRK13947, shikimate kinase; Provisional

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 2/107 (1%)

Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
           + L+G     KT +GK +A  L + + D+D  + E   G + A+ F +  E  ++  E  
Sbjct: 4   IVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEI-EKMTGMTVAEIFEKDGEVRFRSEEKL 62

Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVAR 201
           ++K+L+ +  LV+  G G V +  N+  LR +G+ + +   P ++ R
Sbjct: 63  LVKKLARLKNLVIATGGGVVLNPENVVQLRKNGVVICLKARPEVILR 109

Length = 171

>gnl|CDD|140006 PRK13949, PRK13949, shikimate kinase; Provisional

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 2/107 (1%)

Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
           +FLVG   A KT LGK LA  L   + D D  + E    ++    F E  E  +++ E  
Sbjct: 4   IFLVGYMGAGKTTLGKALARELGLSFIDLDFFI-ENRFHKTVGDIFAERGEAVFRELERN 62

Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALL-RHGISLWIDVPPGMVAR 201
           +L +++    +V+  G GA     N+ L+   G ++++ V P ++  
Sbjct: 63  MLHEVAEFEDVVISTGGGAPCFFDNMELMNASGTTVYLKVSPEVLFV 109

Length = 169

>gnl|CDD|235335 PRK05057, aroK, shikimate kinase I; Reviewed

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
           +FLVG   A K+ +G+ LA  L   ++DSD    E   G      F    E+G++  E +
Sbjct: 7   IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ-EIEKRTGADIGWVFDVEGEEGFRDREEK 65

Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALL 184
           V+ +L+    +V+  G G+V+S      L
Sbjct: 66  VINELTEKQGIVLATGGGSVKSRETRNRL 94

Length = 172

>gnl|CDD|134335 PRK00625, PRK00625, shikimate kinase; Provisional

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV---FEAAGGESAAKAFRESDEKGYQQA 152
           +FL G+    KT  GK LA  L   +FD+D L+   +  A   S  + ++   E+G+ + 
Sbjct: 3   IFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCRE 62

Query: 153 ETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISL-WIDVP-PGMVARMDHSGFPES 210
           E   L  L  +   +V  G G +    + A +R+   L  + +P   +  R+   G PE 
Sbjct: 63  EFLALTSLPVIPS-IVALGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPER 121

Length = 173

>gnl|CDD|184413 PRK13948, PRK13948, shikimate kinase; Provisional

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 8/148 (5%)

Query: 94  TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAE 153
           T V L G     K+ +G  L+ AL  ++ D+D  + E   G+S  + FR   E  +++ E
Sbjct: 11  TWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYI-ERVTGKSIPEIFRHLGEAYFRRCE 69

Query: 154 TEVLKQLSSMGRLVVCAGNGAVQSSANL-ALLRHG--ISLWIDVPPGMVARMDHSGFPES 210
            EV+++L+ +   V+  G G      N   LL  G  + LW   P  +  R      P  
Sbjct: 70  AEVVRRLTRLDYAVISLGGGTFMHEENRRKLLSRGPVVVLWAS-PETIYERTRPGDRPLL 128

Query: 211 EV---LPQLFALYKEMRDGYATADVTVS 235
           +V   L ++  L  E    Y  A + VS
Sbjct: 129 QVEDPLGRIRTLLNEREPVYRQATIHVS 156

Length = 182

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	278
PLN02199	303	shikimate kinase	100.0
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	100.0
PRK13948	182	shikimate kinase; Provisional	99.97
PRK13949	169	shikimate kinase; Provisional	99.96
PRK13946	184	shikimate kinase; Provisional	99.96
PRK00625	173	shikimate kinase; Provisional	99.96
PRK05057	172	aroK shikimate kinase I; Reviewed	99.96
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.95
PRK13947	171	shikimate kinase; Provisional	99.95
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.95
PRK00131	175	aroK shikimate kinase; Reviewed	99.94
PRK03731	171	aroL shikimate kinase II; Reviewed	99.92
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.92
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.91
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.9
PRK04182	180	cytidylate kinase; Provisional	99.74
PRK03839	180	putative kinase; Provisional	99.72
PRK14532	188	adenylate kinase; Provisional	99.69
PRK05541	176	adenylylsulfate kinase; Provisional	99.67
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.65
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.65
PRK06762	166	hypothetical protein; Provisional	99.65
PRK09169	2316	hypothetical protein; Validated	99.65
PRK13975	196	thymidylate kinase; Provisional	99.63
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.62
PRK14530	215	adenylate kinase; Provisional	99.61
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.6
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.58
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	99.57
PRK00889	175	adenylylsulfate kinase; Provisional	99.57
PRK03846	198	adenylylsulfate kinase; Provisional	99.55
KOG3354	191	consensus Gluconate kinase [Carbohydrate transport	99.55
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.54
PRK01184	184	hypothetical protein; Provisional	99.54
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.54
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.53
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.53
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	99.5
PRK02496	184	adk adenylate kinase; Provisional	99.49
PRK06217	183	hypothetical protein; Validated	99.49
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.49
PRK13808	333	adenylate kinase; Provisional	99.49
PRK14531	183	adenylate kinase; Provisional	99.49
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.49
PLN02674	244	adenylate kinase	99.47
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	99.47
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.46
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.45
PRK00279	215	adk adenylate kinase; Reviewed	99.45
PLN02200	234	adenylate kinase family protein	99.45
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.42
PRK08356	195	hypothetical protein; Provisional	99.41
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.41
PRK08233	182	hypothetical protein; Provisional	99.4
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	99.4
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.39
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	99.39
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.38
PRK14527	191	adenylate kinase; Provisional	99.38
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.38
PRK00023	225	cmk cytidylate kinase; Provisional	99.37
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	99.37
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	99.36
PRK14528	186	adenylate kinase; Provisional	99.36
PLN02422	232	dephospho-CoA kinase	99.35
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	99.35
PLN02459	261	probable adenylate kinase	99.34
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.34
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.34
PRK04040	188	adenylate kinase; Provisional	99.33
PRK14526	211	adenylate kinase; Provisional	99.33
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	99.31
PTZ00451	244	dephospho-CoA kinase; Provisional	99.3
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.3
PRK11545	163	gntK gluconate kinase 1; Provisional	99.3
PTZ00088	229	adenylate kinase 1; Provisional	99.29
PRK14529	223	adenylate kinase; Provisional	99.27
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	99.27
PRK14731	208	coaE dephospho-CoA kinase; Provisional	99.27
KOG3079	195	consensus Uridylate kinase/adenylate kinase [Nucle	99.27
PRK08118	167	topology modulation protein; Reviewed	99.27
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	99.27
PRK09825	176	idnK D-gluconate kinase; Provisional	99.26
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.26
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.25
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.25
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.23
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.23
PRK14732	196	coaE dephospho-CoA kinase; Provisional	99.22
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.22
PHA02530	300	pseT polynucleotide kinase; Provisional	99.22
PRK06547	172	hypothetical protein; Provisional	99.21
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.21
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.21
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	99.2
PRK13973	213	thymidylate kinase; Provisional	99.16
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	99.15
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	99.15
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.14
PRK00698	205	tmk thymidylate kinase; Validated	99.14
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	99.14
PLN02924	220	thymidylate kinase	99.1
PRK05480	209	uridine/cytidine kinase; Provisional	99.08
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	99.06
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.06
PLN02842	505	nucleotide kinase	99.04
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	99.04
PRK07261	171	topology modulation protein; Provisional	99.03
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	99.02
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	99.01
PRK06696	223	uridine kinase; Validated	99.01
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	99.01
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.99
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	98.95
PRK13976	209	thymidylate kinase; Provisional	98.94
COG1660	286	Predicted P-loop-containing kinase [General functi	98.94
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	98.93
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	98.91
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	98.9
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	98.88
COG0645	170	Predicted kinase [General function prediction only	98.85
PRK12339	197	2-phosphoglycerate kinase; Provisional	98.85
PRK00300	205	gmk guanylate kinase; Provisional	98.84
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	98.83
PLN02165	334	adenylate isopentenyltransferase	98.83
PRK14737	186	gmk guanylate kinase; Provisional	98.82
KOG3877	393	consensus NADH:ubiquinone oxidoreductase, NDUFA10/	98.81
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.8
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	98.79
PTZ00301	210	uridine kinase; Provisional	98.77
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	98.77
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.76
PRK12338	319	hypothetical protein; Provisional	98.74
PRK07933	213	thymidylate kinase; Validated	98.73
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.73
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	98.7
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.7
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	98.69
PRK13974	212	thymidylate kinase; Provisional	98.67
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.67
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.65
PRK07667	193	uridine kinase; Provisional	98.62
PRK14738	206	gmk guanylate kinase; Provisional	98.58
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.56
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	98.56
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	98.56
PRK15453	290	phosphoribulokinase; Provisional	98.55
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.54
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.52
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.51
PLN02348	395	phosphoribulokinase	98.51
PRK07429	327	phosphoribulokinase; Provisional	98.45
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	98.43
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	98.41
COG3709	192	Uncharacterized component of phosphonate metabolis	98.41
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.38
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	98.38
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.34
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	98.34
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.33
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	98.32
COG4639	168	Predicted kinase [General function prediction only	98.31
PRK05439	311	pantothenate kinase; Provisional	98.27
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	98.23
PHA03132	580	thymidine kinase; Provisional	98.21
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.15
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.15
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	98.12
KOG4238	627	consensus Bifunctional ATP sulfurylase/adenosine 5	98.07
PHA00729	226	NTP-binding motif containing protein	98.02
PF00004	132	AAA: ATPase family associated with various cellula	97.94
PLN02318	656	phosphoribulokinase/uridine kinase	97.94
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	97.93
KOG3327	208	consensus Thymidylate kinase/adenylate kinase [Nuc	97.89
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.87
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.86
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	97.83
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.8
PLN02772	398	guanylate kinase	97.77
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.76
KOG1384	348	consensus tRNA delta(2)-isopentenylpyrophosphate t	97.74
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	97.73
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	97.72
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	97.66
PLN02840	421	tRNA dimethylallyltransferase	97.66
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	97.61
smart00382	148	AAA ATPases associated with a variety of cellular	97.57
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	97.57
PLN02748	468	tRNA dimethylallyltransferase	97.52
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.51
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.5
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.48
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.47
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.45
PRK06761	282	hypothetical protein; Provisional	97.44
KOG3078	235	consensus Adenylate kinase [Nucleotide transport a	97.44
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.4
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.38
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	97.35
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.32
PRK08099	399	bifunctional DNA-binding transcriptional repressor	97.32
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	97.31
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.3
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.3
CHL00181	287	cbbX CbbX; Provisional	97.28
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.27
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.26
CHL00195	489	ycf46 Ycf46; Provisional	97.25
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	97.24
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	97.22
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	97.22
PRK06620	214	hypothetical protein; Validated	97.19
PRK09087	226	hypothetical protein; Validated	97.19
PHA02244	383	ATPase-like protein	97.18
PF13173	128	AAA_14: AAA domain	97.18
PRK10646	153	ADP-binding protein; Provisional	97.17
PHA03136	378	thymidine kinase; Provisional	97.17
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	97.16
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	97.15
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	97.13
PRK04195	482	replication factor C large subunit; Provisional	97.12
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.11
KOG3308	225	consensus Uncharacterized protein of the uridine k	97.11
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.1
KOG2702	323	consensus Predicted panthothenate kinase/uridine k	97.07
PRK03992	389	proteasome-activating nucleotidase; Provisional	97.07
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	96.98
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.96
PF07726	131	AAA_3: ATPase family associated with various cellu	96.96
KOG3062	281	consensus RNA polymerase II elongator associated p	96.95
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	96.94
PRK08084	235	DNA replication initiation factor; Provisional	96.94
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	96.94
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	96.93
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	96.92
COG0802	149	Predicted ATPase or kinase [General function predi	96.92
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.9
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	96.89
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	96.88
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	96.86
CHL00176	638	ftsH cell division protein; Validated	96.85
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.85
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	96.84
COG0714	329	MoxR-like ATPases [General function prediction onl	96.84
COG2256	436	MGS1 ATPase related to the helicase subunit of the	96.83
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	96.82
PRK06893	229	DNA replication initiation factor; Validated	96.81
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	96.8
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	96.79
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.76
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	96.76
COG5324	758	Uncharacterized conserved protein [Function unknow	96.75
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.73
PF02224	157	Cytidylate_kin: Cytidylate kinase; InterPro: IPR01	96.72
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.71
PLN03025	319	replication factor C subunit; Provisional	96.7
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	96.7
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	96.69
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.69
PF05729	166	NACHT: NACHT domain	96.69
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	96.67
PRK15455	644	PrkA family serine protein kinase; Provisional	96.67
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	96.67
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	96.65
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	96.65
PRK13342	413	recombination factor protein RarA; Reviewed	96.64
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.63
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	96.62
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.6
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	96.58
PRK12402	337	replication factor C small subunit 2; Reviewed	96.54
cd03115	173	SRP The signal recognition particle (SRP) mediates	96.52
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	96.5
PF00005	137	ABC_tran: ABC transporter This structure is on hol	96.5
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.5
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.5
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.48
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	96.47
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	96.46
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	96.46
PHA02544	316	44 clamp loader, small subunit; Provisional	96.45
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.44
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.44
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.44
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	96.43
PRK13695	174	putative NTPase; Provisional	96.41
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.41
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	96.41
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.4
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.39
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.38
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	96.38
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.38
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.36
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.36
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.33
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.33
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.33
PF13245	76	AAA_19: Part of AAA domain	96.31
KOG1969	877	consensus DNA replication checkpoint protein CHL12	96.3
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	96.3
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.3
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.3
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.3
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.29
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	96.29
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	96.28
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	96.28
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.28
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.27
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.27
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.26
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.25
PRK10416	318	signal recognition particle-docking protein FtsY;	96.25
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.25
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	96.24
KOG4622	291	consensus Predicted nucleotide kinase [General fun	96.24
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.24
PRK09183	259	transposase/IS protein; Provisional	96.24
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.24
PLN02796	347	D-glycerate 3-kinase	96.23
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	96.2
PRK04296	190	thymidine kinase; Provisional	96.2
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.2
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.2
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	96.2
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.19
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	96.19
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.19
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	96.18
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	96.18
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	96.18
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	96.18
PF01712	146	dNK: Deoxynucleoside kinase; InterPro: IPR002624 T	96.17
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.17
PRK12377	248	putative replication protein; Provisional	96.16
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	96.15
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	96.15
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	96.15
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.14
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	96.14
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	96.13
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	96.13
PRK08181	269	transposase; Validated	96.12
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	96.12
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	96.12
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	96.12
PRK06526	254	transposase; Provisional	96.11
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	96.11
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	96.11
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.11
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.11
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	96.1
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.09
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	96.09
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.09
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.09
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	96.08
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.08
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	96.08
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	96.08
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	96.08
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	96.08
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.08
cd03234	226	ABCG_White The White subfamily represents ABC tran	96.07
KOG0736	953	consensus Peroxisome assembly factor 2 containing	96.06
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	96.06
CHL00206	2281	ycf2 Ycf2; Provisional	96.06
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	96.05
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	96.05
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	96.05
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	96.04
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	96.04
cd03246	173	ABCC_Protease_Secretion This family represents the	96.04
cd03215	182	ABC_Carb_Monos_II This family represents domain II	96.03
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	96.03
PRK10908	222	cell division protein FtsE; Provisional	96.03
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	96.03
PRK14974	336	cell division protein FtsY; Provisional	96.02
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	96.02
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	96.01
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	96.01
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	96.01
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	96.01
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.0
cd01128	249	rho_factor Transcription termination factor rho is	96.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	96.0
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	96.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	95.99
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	95.99
PRK00440	319	rfc replication factor C small subunit; Reviewed	95.99
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	95.99
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	95.99
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	95.99
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	95.98
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	95.98
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	95.98
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	95.98
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	95.97
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	95.97
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	95.97
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	95.97
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	95.97
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	95.97
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	95.97
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	95.96
PRK13768	253	GTPase; Provisional	95.96
TIGR02237	209	recomb_radB DNA repair and recombination protein R	95.96
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	95.96
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	95.95
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	95.95
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	95.95
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	95.95
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	95.95
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	95.95
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	95.94
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	95.94
TIGR00064	272	ftsY signal recognition particle-docking protein F	95.94
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	95.94
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	95.93
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	95.93
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	95.92
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	95.92
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	95.92
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	95.92
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	95.92
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	95.91
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	95.91
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	95.91
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	95.9
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	95.9
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	95.9
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	95.9
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	95.89
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	95.88
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	95.88
KOG0745	564	consensus Putative ATP-dependent Clp-type protease	95.88
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	95.88
PRK13531	498	regulatory ATPase RavA; Provisional	95.88
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	95.87
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	95.87
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	95.87
PRK10865	857	protein disaggregation chaperone; Provisional	95.87
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	95.86
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	95.86
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	95.86
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	95.86
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	95.85
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	95.84
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	95.84
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	95.84
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	95.83
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	95.83
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	95.83
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	95.83
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	95.82
PLN03046	460	D-glycerate 3-kinase; Provisional	95.81
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	95.81
COG1855	604	ATPase (PilT family) [General function prediction	95.81
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	95.81
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	95.81
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	95.81
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	95.81
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	95.81
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	95.81
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	95.8
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	95.8
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	95.8
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	95.79
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	95.79
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	95.78
PRK13341	725	recombination factor protein RarA/unknown domain f	95.78
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	95.77
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	95.77
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	95.77
TIGR00101	199	ureG urease accessory protein UreG. This model rep	95.77
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	95.76
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	95.76
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	95.76
PRK00411	394	cdc6 cell division control protein 6; Reviewed	95.76
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	95.75
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	95.75
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	95.75
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	95.75
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	95.74
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	95.74
PRK09984	262	phosphonate/organophosphate ester transporter subu	95.74
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	95.74
PRK06921	266	hypothetical protein; Provisional	95.74
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	95.74
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	95.73
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	95.73
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	95.73
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	95.73
KOG4235	244	consensus Mitochondrial thymidine kinase 2/deoxygu	95.73
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	95.72
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	95.72
cd02034	116	CooC The accessory protein CooC, which contains a	95.72
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	95.71
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	95.71

>PLN02199 shikimate kinase

Probab=100.00  E-value=1.5e-36  Score=278.51  Aligned_cols=213  Identities=31%  Similarity=0.493  Sum_probs=186.3

Q ss_pred             ceecccccCCccccc-cccccCCccHHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH-
Q 023749           54 ITTRSIADDTTSNTV-TKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-  131 (278)
Q Consensus        54 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~-  131 (278)
                      .++|| .+...+..+ |...+.|++ .+|+++.++++.+++++|+|+|++||||||+|+.||+.+|++|+|+|.++++. 
T Consensus        64 ~~~~~-~~~~~~~le~~~~~~~de~-~Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~  141 (303)
T PLN02199         64 AVSCS-DNNSSALLETGSVYPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAM  141 (303)
T ss_pred             ccccC-CCCchhhcccCCCCCCCHH-HHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHh
Confidence            45577 444433222 333378887 59999999999999999999999999999999999999999999999999997 


Q ss_pred             hCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-h---cCCC
Q 023749          132 AGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-D---HSGF  207 (278)
Q Consensus       132 ~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~---~r~r  207 (278)
                      .| +++.++|..+|+..|++.|.++|.++....++||++|+|++..+.||.+++.+++|||++|++++.+| .   ...|
T Consensus       142 ~G-~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~~~VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E~l~~RL~~~~~~~R  220 (303)
T PLN02199        142 NG-TSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSR  220 (303)
T ss_pred             cC-CCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCEEEECCCcccCCHHHHHHHhCCeEEEEECCHHHHHHHHhhcCCCCC
Confidence            46 89999999999999999999999999877789999999999999999988889999999999999999 3   2346


Q ss_pred             CC---CC------hHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749          208 PE---SE------VLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS  269 (278)
Q Consensus       208 p~---~~------~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~  269 (278)
                      |.   .+      ..+.+.++|++|.+.|..||++|+++++|.++|+.||+++||++++.+|++.+.+.+.
T Consensus       221 PLL~~~~~d~~~~~~~~L~~L~~~R~plY~~Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~  291 (303)
T PLN02199        221 PLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLE  291 (303)
T ss_pred             CcCCCCCcchhhhHHHHHHHHHHHHHHHHHhCCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHh
Confidence            52   11      1467889999999999999999999999999999999999999999999999987764

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=100.00  E-value=6e-34  Score=242.93  Aligned_cols=162  Identities=30%  Similarity=0.448  Sum_probs=146.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN  172 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~  172 (278)
                      .+.|+|+|+|||||||+|+.||+.||++|+|+|.++++..| ++++++|..+||+.||..|.+++.++...++.||++||
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g-~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGG   80 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG-MSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGG   80 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC-cCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCC
Confidence            57899999999999999999999999999999999999999 99999999999999999999999999988889999999


Q ss_pred             ceeechhHHHhhh-CCcEEEEEcCHHHHHhh-h-cCCCC---CCChHHHHHHHHHHhhhccc-cCcEEEecCcccccccc
Q 023749          173 GAVQSSANLALLR-HGISLWIDVPPGMVARM-D-HSGFP---ESEVLPQLFALYKEMRDGYA-TADVTVSLQKVASQLGY  245 (278)
Q Consensus       173 g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~-~r~rp---~~~~~~~l~~~~~er~~~Y~-~AD~vId~~~va~~~~~  245 (278)
                      |++..++|+.+|+ .+++|||++|++++.+| + .+.||   ..+..+.+..+|++|.++|+ .||++++.         
T Consensus        81 G~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e~a~~~~~~---------  151 (172)
T COG0703          81 GAVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYREVADFIIDT---------  151 (172)
T ss_pred             ccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHHhCcEEecC---------
Confidence            9999999999998 88999999999999999 3 45566   23445779999999999999 58999983         


Q ss_pred             cCCCCCCHHHHHHHHHHHhhhcC
Q 023749          246 DDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       246 ~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                         +..+ ++++++|++.+....
T Consensus       152 ---~~~~-~~v~~~i~~~l~~~~  170 (172)
T COG0703         152 ---DDRS-EEVVEEILEALEGSL  170 (172)
T ss_pred             ---CCCc-HHHHHHHHHHHHHhc
Confidence               4455 999999999987654

>PRK13948 shikimate kinase; Provisional

Probab=99.97  E-value=1.2e-30  Score=225.84  Aligned_cols=166  Identities=24%  Similarity=0.285  Sum_probs=149.8

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEE
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC  169 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~  169 (278)
                      +..+.+|+|+|++||||||+|+.||+.||++|+|+|.++++..| ++++++|..+|+..||++|.+++.++....++||+
T Consensus         7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g-~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VIa   85 (182)
T PRK13948          7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTG-KSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVIS   85 (182)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHh-CCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence            34678999999999999999999999999999999999999998 89999999999999999999999999877889999


Q ss_pred             eCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcCCCCC---CChHHHHHHHHHHhhhccccCcEEEecCccccccc
Q 023749          170 AGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFPE---SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLG  244 (278)
Q Consensus       170 ~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r~rp~---~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~  244 (278)
                      +|+|++.++.|++.++ .+.+|||++|++++.+| ..+.||.   .+..+.+.++|++|.+.|..||++|+         
T Consensus        86 ~GgG~v~~~~n~~~l~~~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~R~~~Y~~a~~~i~---------  156 (182)
T PRK13948         86 LGGGTFMHEENRRKLLSRGPVVVLWASPETIYERTRPGDRPLLQVEDPLGRIRTLLNEREPVYRQATIHVS---------  156 (182)
T ss_pred             CCCcEEcCHHHHHHHHcCCeEEEEECCHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEE---------
Confidence            9999999999998887 78999999999999999 5455662   23457889999999999988999998         


Q ss_pred             ccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          245 YDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       245 ~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                         |++.|+++++++|.+.+..++
T Consensus       157 ---t~~~~~~ei~~~i~~~l~~~~  177 (182)
T PRK13948        157 ---TDGRRSEEVVEEIVEKLWAWA  177 (182)
T ss_pred             ---CCCCCHHHHHHHHHHHHHHHh
Confidence               678999999999999998754

>PRK13949 shikimate kinase; Provisional

Probab=99.96  E-value=1.4e-28  Score=210.38  Aligned_cols=158  Identities=23%  Similarity=0.336  Sum_probs=139.8

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g  173 (278)
                      +.|+|+|+|||||||+|+.||+.+|++++|+|.++++..+ +++.++|...|+..|++.|..++.++....++||++|+|
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~-~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg   80 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH-KTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGG   80 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC-ccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence            4799999999999999999999999999999999999988 899999999999999999999999987667899999999


Q ss_pred             eeechhHHHhhh-CCcEEEEEcCHHHHHhh-h--cCCCCCC------ChHHHHHHHHHHhhhccccCcEEEecCcccccc
Q 023749          174 AVQSSANLALLR-HGISLWIDVPPGMVARM-D--HSGFPES------EVLPQLFALYKEMRDGYATADVTVSLQKVASQL  243 (278)
Q Consensus       174 ~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~--~r~rp~~------~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~  243 (278)
                      ++..+.+++.|+ .+++|||++|++++.+| .  +++||..      +..+.+..+|++|.++|+.||++||        
T Consensus        81 ~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~ad~~id--------  152 (169)
T PRK13949         81 APCFFDNMELMNASGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQAKIIFN--------  152 (169)
T ss_pred             ccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCEEEE--------
Confidence            999998998887 89999999999999999 3  3467632      1224677899999999999999998        


Q ss_pred             cccCCCCCCHHHHHHHHHHHh
Q 023749          244 GYDDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       244 ~~~Dts~~tpeeva~~I~~~i  264 (278)
                          ++++++++++++|++.+
T Consensus       153 ----~~~~~~~e~~~~I~~~~  169 (169)
T PRK13949        153 ----ADKLEDESQIEQLVQRL  169 (169)
T ss_pred             ----CCCCCHHHHHHHHHHhC
Confidence                67899999999998753

>PRK13946 shikimate kinase; Provisional

Probab=99.96  E-value=2.1e-27  Score=205.05  Aligned_cols=169  Identities=28%  Similarity=0.355  Sum_probs=149.4

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEE
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV  168 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI  168 (278)
                      +.+..+.|+|+|++||||||+|+.||++||++|+|+|.++++..| .++.+++..+|+..|++.|.+++..+...+++||
T Consensus         6 ~~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g-~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi   84 (184)
T PRK13946          6 AALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAAR-MTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVL   84 (184)
T ss_pred             hccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEE
Confidence            567889999999999999999999999999999999999998888 8888999999999999999999999887778999


Q ss_pred             EeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hc-CCCCC---CChHHHHHHHHHHhhhccccCcEEEecCccccc
Q 023749          169 CAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DH-SGFPE---SEVLPQLFALYKEMRDGYATADVTVSLQKVASQ  242 (278)
Q Consensus       169 ~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~-r~rp~---~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~  242 (278)
                      ++|++.+..+.+++.++ .+++|||++|++++.+| .. .++|.   .+..+.++.++++|.+.|..+|++|+       
T Consensus        85 ~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y~~~dl~i~-------  157 (184)
T PRK13946         85 ATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVYAEADLTVA-------  157 (184)
T ss_pred             ECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhCCEEEE-------
Confidence            99988888888888886 78999999999999999 43 34552   34467788899999999988999998       


Q ss_pred             ccccCCCCCCHHHHHHHHHHHhhhcCCC
Q 023749          243 LGYDDLDAVTTEDMTLEVKWLYNASISD  270 (278)
Q Consensus       243 ~~~~Dts~~tpeeva~~I~~~i~~~~~~  270 (278)
                           +++.+++++++.|.+.+..+.++
T Consensus       158 -----~~~~~~~~~~~~i~~~i~~~~~~  180 (184)
T PRK13946        158 -----SRDVPKEVMADEVIEALAAYLEK  180 (184)
T ss_pred             -----CCCCCHHHHHHHHHHHHHHhhcc
Confidence                 68899999999999999887654

>PRK00625 shikimate kinase; Provisional

Probab=99.96  E-value=1.6e-27  Score=204.91  Aligned_cols=163  Identities=24%  Similarity=0.359  Sum_probs=142.8

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCC----ChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEE
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE----SAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC  169 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~----~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~  169 (278)
                      ++|+|+|+|||||||+|+.||+++|++|+|+|.++++..| +    ++.++|+.+|++.|+..|..++.++.. .+.||+
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g-~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~-~~~VIs   78 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYH-GALYSSPKEIYQAYGEEGFCREEFLALTSLPV-IPSIVA   78 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhC-CCCCCCHHHHHHHHCHHHHHHHHHHHHHHhcc-CCeEEE
Confidence            4799999999999999999999999999999999999887 5    899999999999999999999988865 667999


Q ss_pred             eCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcCCCCC-CChHHHHHHHHHHhhhcccc-CcEEEecCcccccccc
Q 023749          170 AGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFPE-SEVLPQLFALYKEMRDGYAT-ADVTVSLQKVASQLGY  245 (278)
Q Consensus       170 ~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r~rp~-~~~~~~l~~~~~er~~~Y~~-AD~vId~~~va~~~~~  245 (278)
                      +|+|.+..++++..++ .+.+|||++|++++.+| ..|+++. ....+.+.++|++|.+.|+. ||++|+.++|      
T Consensus        79 ~GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~~~ad~~i~~~~~------  152 (173)
T PRK00625         79 LGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRMRSIADYIFSLDHV------  152 (173)
T ss_pred             CCCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHHHHHCCEEEeCCCc------
Confidence            9999999999998887 68999999999999999 7666543 22356788899999999985 9999997754      


Q ss_pred             cCCCCCCHHHHHHHHHHHh
Q 023749          246 DDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       246 ~Dts~~tpeeva~~I~~~i  264 (278)
                      .+|++.++-++++.+...+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~  171 (173)
T PRK00625        153 AETSSESLMRACQSFCTLL  171 (173)
T ss_pred             ccCCCCCHHHHHHHHHHHh
Confidence            4579999999999988765

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.96  E-value=2.3e-27  Score=203.27  Aligned_cols=162  Identities=23%  Similarity=0.363  Sum_probs=143.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG  171 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g  171 (278)
                      ..++|+|+|++||||||+|+.||+.+|++++|+|..+++..| .++.++|..+|+..|+..|.+++..+...+++|+++|
T Consensus         3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g-~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~g   81 (172)
T PRK05057          3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG-ADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATG   81 (172)
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC-cCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence            467899999999999999999999999999999999999888 8888999999999999999999999887788999999


Q ss_pred             CceeechhHHHhhh-CCcEEEEEcCHHHHHhh--hcCCCCC---CChHHHHHHHHHHhhhcccc-CcEEEecCccccccc
Q 023749          172 NGAVQSSANLALLR-HGISLWIDVPPGMVARM--DHSGFPE---SEVLPQLFALYKEMRDGYAT-ADVTVSLQKVASQLG  244 (278)
Q Consensus       172 ~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R--~~r~rp~---~~~~~~l~~~~~er~~~Y~~-AD~vId~~~va~~~~  244 (278)
                      +|++..+.++.+|+ .+.+|||++|++++.+|  ....||.   .+..+.+..++++|.++|+. ||++||         
T Consensus        82 gg~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~Y~~~Ad~~id---------  152 (172)
T PRK05057         82 GGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPLYEEIADVTIR---------  152 (172)
T ss_pred             CchhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCEEEE---------
Confidence            99999999998887 88999999999999999  3334552   22345688899999999985 999998         


Q ss_pred             ccCCCCCCHHHHHHHHHHHhhh
Q 023749          245 YDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       245 ~~Dts~~tpeeva~~I~~~i~~  266 (278)
                         |+++|++|++++|.+.+.+
T Consensus       153 ---t~~~s~~ei~~~i~~~l~~  171 (172)
T PRK05057        153 ---TDDQSAKVVANQIIHMLES  171 (172)
T ss_pred             ---CCCCCHHHHHHHHHHHHhh
Confidence               6899999999999998864

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.95  E-value=2.4e-27  Score=235.61  Aligned_cols=162  Identities=20%  Similarity=0.280  Sum_probs=144.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG  171 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g  171 (278)
                      .-+.|+|+|+|||||||+|+.||++||++|+|+|.++++..| ++++++|..+|++.||++|.++++++....++||+||
T Consensus         5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g-~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs~G   83 (542)
T PRK14021          5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIG-MSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFSLG   83 (542)
T ss_pred             CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHC-cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEECC
Confidence            356899999999999999999999999999999999999999 9999999999999999999999999886677899999


Q ss_pred             CceeechhHHHhh----h-CCcEEEEEcCHHHHHhh--hcCCCCC--CChHHHHHHHHHHhhhcccc-CcEEEecCcccc
Q 023749          172 NGAVQSSANLALL----R-HGISLWIDVPPGMVARM--DHSGFPE--SEVLPQLFALYKEMRDGYAT-ADVTVSLQKVAS  241 (278)
Q Consensus       172 ~g~v~~~~~~~~L----~-~~~vV~L~a~~e~l~~R--~~r~rp~--~~~~~~l~~~~~er~~~Y~~-AD~vId~~~va~  241 (278)
                      +|++.++.|++.|    + .+++|||++|++++.+|  ...+||.  .+..+.+.++|++|.+.|+. ||++|+      
T Consensus        84 GG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~~Y~~~Ad~~i~------  157 (542)
T PRK14021         84 GGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQRDPVFRQVANVHVH------  157 (542)
T ss_pred             CchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhhCCEEEE------
Confidence            9999999999865    4 67999999999999999  3334663  23357889999999999985 999998      


Q ss_pred             cccccCCCCCCHHHHHHHHHHHhhh
Q 023749          242 QLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       242 ~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                            |++.++++++++|++.+..
T Consensus       158 ------~~~~~~~~~~~~i~~~~~~  176 (542)
T PRK14021        158 ------TRGLTPQAAAKKLIDMVAE  176 (542)
T ss_pred             ------CCCCCHHHHHHHHHHHHHh
Confidence                  6789999999999998864

>PRK13947 shikimate kinase; Provisional

Probab=99.95  E-value=1.2e-26  Score=196.38  Aligned_cols=159  Identities=24%  Similarity=0.408  Sum_probs=139.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g  173 (278)
                      ++|+|+|+|||||||+|+.||++||++|+|.|.++++..| .++.++|...|+..|++.|..+++.+....++||++|+|
T Consensus         2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g-~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g   80 (171)
T PRK13947          2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTG-MTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGG   80 (171)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcC-CcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCC
Confidence            3699999999999999999999999999999999999888 888899999999999999999999888777899999999


Q ss_pred             eeechhHHHhhh-CCcEEEEEcCHHHHHhh-h-cCCCCC---CChHHHHHHHHHHhhhccccCcEEEecCcccccccccC
Q 023749          174 AVQSSANLALLR-HGISLWIDVPPGMVARM-D-HSGFPE---SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDD  247 (278)
Q Consensus       174 ~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~-~r~rp~---~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~D  247 (278)
                      +++++.++..|+ .+++|||++|++.+.+| . ++.+|.   .+..+.+.+++.+|.+.|+.+|++||            
T Consensus        81 ~vl~~~~~~~l~~~~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~~~y~~ad~~Id------------  148 (171)
T PRK13947         81 VVLNPENVVQLRKNGVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELLKEREPFYDFADYTID------------  148 (171)
T ss_pred             CcCCHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCEEEE------------
Confidence            999888887776 78999999999999999 3 334542   33557788889999998888999998            


Q ss_pred             CCCCCHHHHHHHHHH-Hhh
Q 023749          248 LDAVTTEDMTLEVKW-LYN  265 (278)
Q Consensus       248 ts~~tpeeva~~I~~-~i~  265 (278)
                      |++.++++++++|.+ ++.
T Consensus       149 t~~~~~~~i~~~I~~~~~~  167 (171)
T PRK13947        149 TGDMTIDEVAEEIIKAYLK  167 (171)
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            688999999999999 444

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.95  E-value=6.4e-27  Score=197.45  Aligned_cols=151  Identities=26%  Similarity=0.412  Sum_probs=128.4

Q ss_pred             CCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCceeechhHH
Q 023749          102 NNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANL  181 (278)
Q Consensus       102 ~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g~v~~~~~~  181 (278)
                      |||||||+|+.||+.||++|+|+|.++++.+| +++.++|...|++.|++.|.+++.++....++||+||+|++..+.++
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g-~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~~~~~   79 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG-MSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVLKEENR   79 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGSHHHH
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC-CcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCcHHHH
Confidence            79999999999999999999999999999999 99999999999999999999999999987799999999999999999


Q ss_pred             Hhhh-CCcEEEEEcCHHHHHhh--hcCCCCC-CChH--HHHHHHHHHhhhccc-cCcEEEecCcccccccccCCCCCCHH
Q 023749          182 ALLR-HGISLWIDVPPGMVARM--DHSGFPE-SEVL--PQLFALYKEMRDGYA-TADVTVSLQKVASQLGYDDLDAVTTE  254 (278)
Q Consensus       182 ~~L~-~~~vV~L~a~~e~l~~R--~~r~rp~-~~~~--~~l~~~~~er~~~Y~-~AD~vId~~~va~~~~~~Dts~~tpe  254 (278)
                      +.|+ .+.+|||++|++++.+|  ....||. .+..  ..+...+.+|.+.|. .++.+|+            +++.+|+
T Consensus        80 ~~L~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y~~~a~~~v~------------~~~~~~~  147 (158)
T PF01202_consen   80 ELLKENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLYEQAADIVVD------------TDGSPPE  147 (158)
T ss_dssp             HHHHHHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHHHHHSSEEEE------------TSSCHHH
T ss_pred             HHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeEEEe------------CCCCCHH
Confidence            9998 89999999999999999  3334552 1111  234455558999998 5889988            5778889


Q ss_pred             HHHHHHHHHhh
Q 023749          255 DMTLEVKWLYN  265 (278)
Q Consensus       255 eva~~I~~~i~  265 (278)
                      +++++|++.|+
T Consensus       148 ~i~~~i~~~l~  158 (158)
T PF01202_consen  148 EIAEEILEFLK  158 (158)
T ss_dssp             HHHHHHHHHH-
T ss_pred             HHHHHHHHHhC
Confidence            99999999874

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.94  E-value=6.4e-25  Score=184.94  Aligned_cols=163  Identities=33%  Similarity=0.494  Sum_probs=140.5

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEe
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA  170 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~  170 (278)
                      +++++|+|+|++||||||+|+.||+.+|++++|.|.++++..| .++.+++...|+..|++.+..++.++....++||.+
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~   80 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAG-KSIPEIFEEEGEAAFRELEEEVLAELLARHNLVIST   80 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence            5788999999999999999999999999999999999999888 788888888899999999999999888766678888


Q ss_pred             CCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hc-CCCCC---CChHHHHHHHHHHhhhcccc-CcEEEecCcccccc
Q 023749          171 GNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DH-SGFPE---SEVLPQLFALYKEMRDGYAT-ADVTVSLQKVASQL  243 (278)
Q Consensus       171 g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~-r~rp~---~~~~~~l~~~~~er~~~Y~~-AD~vId~~~va~~~  243 (278)
                      |++++..+.+++.|+ .+++|||++|++.+.+| .. ..++.   .+..+.+...+.++.+.|.. +|++||        
T Consensus        81 g~~~~~~~~~r~~l~~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~id--------  152 (175)
T PRK00131         81 GGGAVLREENRALLRERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPLYEEVADITVE--------  152 (175)
T ss_pred             CCCEeecHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCeEEe--------
Confidence            988888888888885 77999999999999999 33 23332   23456778888888888875 999998        


Q ss_pred             cccCCCCCCHHHHHHHHHHHhhh
Q 023749          244 GYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       244 ~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                          |++.+++++++.|.+++..
T Consensus       153 ----t~~~~~~e~~~~I~~~v~~  171 (175)
T PRK00131        153 ----TDGRSPEEVVNEILEKLEA  171 (175)
T ss_pred             ----CCCCCHHHHHHHHHHHHHh
Confidence                7899999999999999864

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.92  E-value=9.1e-24  Score=179.20  Aligned_cols=158  Identities=20%  Similarity=0.347  Sum_probs=134.8

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g  173 (278)
                      +.|+|+|++||||||+|+.||+++|++++|.|.+++...| +++.+++...|+..|++.|.+++..+. ...+||++|++
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g-~~~~~~~~~~g~~~~~~~e~~~~~~~~-~~~~vi~~ggg   80 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSN-MTVAEIVEREGWAGFRARESAALEAVT-APSTVIATGGG   80 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHhc-CCCeEEECCCC
Confidence            6799999999999999999999999999999999999988 888999988999999999999886654 46689999999


Q ss_pred             eeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcC----CCCC---CChHHHHHHHHHHhhhccc-cCcEEEecCcccccc
Q 023749          174 AVQSSANLALLR-HGISLWIDVPPGMVARM-DHS----GFPE---SEVLPQLFALYKEMRDGYA-TADVTVSLQKVASQL  243 (278)
Q Consensus       174 ~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r----~rp~---~~~~~~l~~~~~er~~~Y~-~AD~vId~~~va~~~  243 (278)
                      +++.+.++++++ .+++|||++|++++.+| ..|    .||.   .+..+.+...+++|.+.|. .++++||.       
T Consensus        81 ~vl~~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~a~~~Id~-------  153 (171)
T PRK03731         81 IILTEENRHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREVAHHIIDA-------  153 (171)
T ss_pred             ccCCHHHHHHHHhCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHhCCEEEcC-------
Confidence            999888888887 78999999999999999 432    2342   2334667788899988887 48888883       


Q ss_pred             cccCCCCCCHHHHHHHHHHHhhh
Q 023749          244 GYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       244 ~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                            ..++++++++|.+.+.+
T Consensus       154 ------~~~~e~v~~~i~~~l~~  170 (171)
T PRK03731        154 ------TQPPSQVVSEILSALAQ  170 (171)
T ss_pred             ------CCCHHHHHHHHHHHHhc
Confidence                  37999999999998864

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.92  E-value=1e-23  Score=196.26  Aligned_cols=168  Identities=24%  Similarity=0.394  Sum_probs=145.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHc-CCCEEEEe
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSS-MGRLVVCA  170 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~-~~~~VI~~  170 (278)
                      ++.+|+|+|++||||||+|+.||+.||++|+|+|..+++..| +++.+++...|++.|+..|.+++.++.. ...+||++
T Consensus       132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G-~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI~~  210 (309)
T PRK08154        132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAG-LSVSEIFALYGQEGYRRLERRALERLIAEHEEMVLAT  210 (309)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEEEC
Confidence            578999999999999999999999999999999999999998 8999999999999999999998888764 45688999


Q ss_pred             CCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcCC--CC---CCChHHHHHHHHHHhhhccccCcEEEecCcccccc
Q 023749          171 GNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSG--FP---ESEVLPQLFALYKEMRDGYATADVTVSLQKVASQL  243 (278)
Q Consensus       171 g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r~--rp---~~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~  243 (278)
                      |++++..+.++..+. .+++|||++|++++.+| ..++  +|   ..+..+.+..++++|.++|+.+|++|+        
T Consensus       211 Ggg~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y~~ad~~I~--------  282 (309)
T PRK08154        211 GGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLYARADAVVD--------  282 (309)
T ss_pred             CCchhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEE--------
Confidence            988888888887665 77899999999999999 4332  33   233457888999999999999999998        


Q ss_pred             cccCCCCCCHHHHHHHHHHHhhhcCCCCc
Q 023749          244 GYDDLDAVTTEDMTLEVKWLYNASISDPT  272 (278)
Q Consensus       244 ~~~Dts~~tpeeva~~I~~~i~~~~~~~~  272 (278)
                          |+++++++++++|.+.+...+.-|.
T Consensus       283 ----t~~~s~ee~~~~I~~~l~~~~~~~~  307 (309)
T PRK08154        283 ----TSGLTVAQSLARLRELVRPALGLPA  307 (309)
T ss_pred             ----CCCCCHHHHHHHHHHHHHHHhccCC
Confidence                6789999999999999987776554

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.91  E-value=2.8e-23  Score=204.10  Aligned_cols=154  Identities=23%  Similarity=0.377  Sum_probs=135.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g  173 (278)
                      |+|+|+|+|||||||+|+.||+.+|++++|+|.++++..| +++.++|..+|+++|+++|.++++++....++||++|+|
T Consensus         1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g-~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Ggg   79 (488)
T PRK13951          1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREG-RSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGG   79 (488)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcC-CCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCc
Confidence            4799999999999999999999999999999999999988 899999999999999999999999988767899999999


Q ss_pred             eeechhHHHhhhCCcEEEEEcCHHHHHhh-hcCCCCC-CChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCC
Q 023749          174 AVQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPE-SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAV  251 (278)
Q Consensus       174 ~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r~rp~-~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~  251 (278)
                      ++.++.+++.++.+.+|||++|++++.+| ..++||. .+..+.+.++|++|.+.|+.. .+||            |+++
T Consensus        80 vv~~~~~r~~l~~~~vI~L~as~e~l~~Rl~~~~RPLl~~~~e~l~~L~~~R~~lY~~~-~~ID------------t~~~  146 (488)
T PRK13951         80 VVIDPENRELLKKEKTLFLYAPPEVLMERVTTENRPLLREGKERIREIWERRKQFYTEF-RGID------------TSKL  146 (488)
T ss_pred             cccChHHHHHHhcCeEEEEECCHHHHHHHhccCCCCCccccHHHHHHHHHHHHHHHhcc-cEEE------------CCCC
Confidence            99999999988866799999999999999 6567773 223467888999999999854 3666            7889


Q ss_pred             CHHHHHHHHH
Q 023749          252 TTEDMTLEVK  261 (278)
Q Consensus       252 tpeeva~~I~  261 (278)
                      |+++++.+|+
T Consensus       147 s~~e~~~~iv  156 (488)
T PRK13951        147 NEWETTALVV  156 (488)
T ss_pred             CHHHHHHHHH
Confidence            9988877763

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.90  E-value=1.3e-22  Score=168.17  Aligned_cols=147  Identities=34%  Similarity=0.493  Sum_probs=124.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCce
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA  174 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g~  174 (278)
                      .|+|+|++||||||+|+.||+.+|++++|.|.++++..+ .++.+++...|++.|+..+.+++..+....++||++|+++
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~~   79 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAG-MSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGGA   79 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcC-CCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCCc
Confidence            489999999999999999999999999999999999888 7888888888999999999888888887788999988888


Q ss_pred             eechhHHHhhh-CCcEEEEEcCHHHHHhh-hcC-CCCCC--ChHHHHHHHHHHhhhcccc-CcEEEecCcccccccccCC
Q 023749          175 VQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPES--EVLPQLFALYKEMRDGYAT-ADVTVSLQKVASQLGYDDL  248 (278)
Q Consensus       175 v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r-~rp~~--~~~~~l~~~~~er~~~Y~~-AD~vId~~~va~~~~~~Dt  248 (278)
                      +.+..+++.+. ++++|||++|++++.+| ..| .||..  ...+.+..+|++|.+.|.. ||++|+            |
T Consensus        80 i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~r~~~Y~~~ad~~i~------------~  147 (154)
T cd00464          80 VLREENRRLLLENGIVVWLDASPEELLERLARDKTRPLLQDEDPERLRELLEEREPLYREVADLTID------------T  147 (154)
T ss_pred             cCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcEEEE------------C
Confidence            88776655554 78999999999999999 444 35532  2225788899999999985 999998            5


Q ss_pred             CCCCHH
Q 023749          249 DAVTTE  254 (278)
Q Consensus       249 s~~tpe  254 (278)
                      +++|++
T Consensus       148 ~~~~~~  153 (154)
T cd00464         148 DELSPE  153 (154)
T ss_pred             CCCCCC
Confidence            677765

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK04182 cytidylate kinase; Provisional

Probab=99.74  E-value=5.9e-17  Score=137.27  Aligned_cols=155  Identities=14%  Similarity=0.180  Sum_probs=99.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH---hCCCChHHHHHhhchhHh---HHHHHHHHHHHH-cCCCE
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA---AGGESAAKAFRESDEKGY---QQAETEVLKQLS-SMGRL  166 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~---~g~~~i~ei~~~~ge~~f---r~~e~~vl~~l~-~~~~~  166 (278)
                      ++|+|+|++||||||+|+.||+++|++++|+|+++++.   .| .++.++.. .++..+   +..+.. +..+. ..+++
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g-~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~   77 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERG-MSLEEFNK-YAEEDPEIDKEIDRR-QLEIAEKEDNV   77 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcC-CCHHHHHH-HhhcCchHHHHHHHH-HHHHHhcCCCE
Confidence            57999999999999999999999999999988876553   34 55555443 333332   223322 33444 44555


Q ss_pred             EEEeC-CceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcC-CCCCCChHHHHHHH-----------HHHhhhccccCcE
Q 023749          167 VVCAG-NGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQLFAL-----------YKEMRDGYATADV  232 (278)
Q Consensus       167 VI~~g-~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~l~~~-----------~~er~~~Y~~AD~  232 (278)
                      |+... ++++..+      ..+++|||++|++++.+| ..| +++..+....+...           |..+.+.|..+|+
T Consensus        78 Vi~g~~~~~~~~~------~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~  151 (180)
T PRK04182         78 VLEGRLAGWMAKD------YADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSIYDL  151 (180)
T ss_pred             EEEEeecceEecC------CCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccE
Confidence            55421 2222210      156899999999999999 433 34432222222222           2222222356899


Q ss_pred             EEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749          233 TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS  269 (278)
Q Consensus       233 vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~  269 (278)
                      +||            |+..+++++++.|.+.+.....
T Consensus       152 ~id------------t~~~~~~~~~~~I~~~~~~~~~  176 (180)
T PRK04182        152 VIN------------TSRWDPEGVFDIILTAIDKLLK  176 (180)
T ss_pred             EEE------------CCCCCHHHHHHHHHHHHHHHhc
Confidence            988            7899999999999999986543

>PRK03839 putative kinase; Provisional

Probab=99.72  E-value=7.1e-17  Score=138.20  Aligned_cols=150  Identities=17%  Similarity=0.272  Sum_probs=97.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g  173 (278)
                      ++|+|+|+|||||||+|+.||+++|++|+|+|+++++. +   +.+.+...++..|+.++..+.+.. ...++|+ +|. 
T Consensus         1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~-~---~~~~~~~~~~~~~~~l~~~~~~~~-~~~~vIi-dG~-   73 (180)
T PRK03839          1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK-G---IGEEKDDEMEIDFDKLAYFIEEEF-KEKNVVL-DGH-   73 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc-C---CcccCChhhhcCHHHHHHHHHHhc-cCCCEEE-Eec-
Confidence            47999999999999999999999999999999998753 1   233444555667787777665432 2334444 442 


Q ss_pred             eeechhHHHhh-hCCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHh--hhccc-c-CcEEEecCcccccccccC
Q 023749          174 AVQSSANLALL-RHGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEM--RDGYA-T-ADVTVSLQKVASQLGYDD  247 (278)
Q Consensus       174 ~v~~~~~~~~L-~~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er--~~~Y~-~-AD~vId~~~va~~~~~~D  247 (278)
                             +..+ ..+++|||+++++++.+| ..|+.......+.+...+.+.  ...|. . ..++||            
T Consensus        74 -------~~~l~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~Id------------  134 (180)
T PRK03839         74 -------LSHLLPVDYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALEEKEKVIEVD------------  134 (180)
T ss_pred             -------cccccCCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE------------
Confidence                   1112 368899999999999999 555432111111111111110  01122 1 234555            


Q ss_pred             CCCCCHHHHHHHHHHHhhhcCC
Q 023749          248 LDAVTTEDMTLEVKWLYNASIS  269 (278)
Q Consensus       248 ts~~tpeeva~~I~~~i~~~~~  269 (278)
                      +++.++++++++|.+.+.+..+
T Consensus       135 ~~~~s~eev~~~I~~~l~~~~~  156 (180)
T PRK03839        135 TTGKTPEEVVEEILELIKSGKK  156 (180)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCC
Confidence            6789999999999999987654

>PRK14532 adenylate kinase; Provisional

Probab=99.69  E-value=9e-16  Score=132.13  Aligned_cols=157  Identities=15%  Similarity=0.154  Sum_probs=99.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC-C----CChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEE
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-G----ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV  168 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g-~----~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI  168 (278)
                      ++|+|+|+|||||||+|+.||+++|+.++++|+++++... +    ..+.+++. .|+..+.++-..++......    +
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~----~   75 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMD-RGELVSDEIVIALIEERLPE----A   75 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHH-CCCccCHHHHHHHHHHHHhC----c
Confidence            4699999999999999999999999999999999887531 0    22344444 35555555444444433321    2


Q ss_pred             EeCCceeec--h---hHHH----hhh-----CCcEEEEEcCHHHHHhh-hcC----CCCCCC---hHHHHHHHHHHhh--
Q 023749          169 CAGNGAVQS--S---ANLA----LLR-----HGISLWIDVPPGMVARM-DHS----GFPESE---VLPQLFALYKEMR--  224 (278)
Q Consensus       169 ~~g~g~v~~--~---~~~~----~L~-----~~~vV~L~a~~e~l~~R-~~r----~rp~~~---~~~~l~~~~~er~--  224 (278)
                      .+++|++++  +   ...+    .++     .+++|||++|++++.+| ..|    +|+...   ....+...+.++.  
T Consensus        76 ~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i  155 (188)
T PRK14532         76 EAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPL  155 (188)
T ss_pred             CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            234445543  1   1121    222     34799999999999999 443    355432   2244554555553  


Q ss_pred             -hccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          225 -DGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       225 -~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                       +.|+..+..+..          | ...+++++.++|...+.+
T Consensus       156 ~~~y~~~~~~~~i----------d-~~~~~eev~~~I~~~l~~  187 (188)
T PRK14532        156 LPYYAGQGKLTEV----------D-GMGSIEAVAASIDAALEG  187 (188)
T ss_pred             HHHHHhcCCEEEE----------E-CCCCHHHHHHHHHHHHhc
Confidence             345544444432          1 458999999999998864

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.67  E-value=3.8e-16  Score=133.21  Aligned_cols=160  Identities=14%  Similarity=0.162  Sum_probs=100.2

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHHHHHhCCCChHHHHHhhc-hhHhHHHHHHHHHHHHcCC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESD-EKGYQQAETEVLKQLSSMG  164 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li~~~~g~~~i~ei~~~~g-e~~fr~~e~~vl~~l~~~~  164 (278)
                      -+|..|+|+|++||||||+|+.|++.++     +.+++.|.+.+ .++ ...   +.... .+... ....+...+...+
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~-~~~-~~~---~~~~~~~~~~~-~~~~l~~~l~~~g   78 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE-ILG-HYG---YDKQSRIEMAL-KRAKLAKFLADQG   78 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh-hcC-CCC---CCHHHHHHHHH-HHHHHHHHHHhCC
Confidence            3688999999999999999999999986     67888877643 222 110   00000 01111 1111122233445


Q ss_pred             CEEEEeCCcee--echhHHHhhhCCcEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc-cCcEEEecCcccc
Q 023749          165 RLVVCAGNGAV--QSSANLALLRHGISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA-TADVTVSLQKVAS  241 (278)
Q Consensus       165 ~~VI~~g~g~v--~~~~~~~~L~~~~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~-~AD~vId~~~va~  241 (278)
                      ..||+++.+.+  ....++..+...++|||++|++++.+|..++.......+.+..++..+.+.|. .||++|++     
T Consensus        79 ~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ad~vI~~-----  153 (176)
T PRK05541         79 MIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIPFDEPKADLVIDN-----  153 (176)
T ss_pred             CEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCcccCCCCCEEEeC-----
Confidence            67887765433  12223333334578999999999999932221101112345566777788786 59999994     


Q ss_pred             cccccCCCC-CCHHHHHHHHHHHhhhcC
Q 023749          242 QLGYDDLDA-VTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       242 ~~~~~Dts~-~tpeeva~~I~~~i~~~~  268 (278)
                             ++ .++++++++|.+.+.+.+
T Consensus       154 -------~~~~~~~~~v~~i~~~l~~~~  174 (176)
T PRK05541        154 -------SCRTSLDEKVDLILNKLKLRL  174 (176)
T ss_pred             -------CCCCCHHHHHHHHHHHHHHhc
Confidence                   44 699999999999987654

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.65  E-value=3.5e-16  Score=156.49  Aligned_cols=157  Identities=15%  Similarity=0.212  Sum_probs=101.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCC------ceecCchHHHHHhCCCChHHHHHh-hchhHhHHHHHHHHHHHHcCC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRY------YYFDSDSLVFEAAGGESAAKAFRE-SDEKGYQQAETEVLKQLSSMG  164 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~------~~iD~D~li~~~~g~~~i~ei~~~-~ge~~fr~~e~~vl~~l~~~~  164 (278)
                      +|..|+|+|+|||||||+|+.|++.|+.      .++|.|.+...+.++.    .|.. +.+..++.+- .+...+...+
T Consensus       391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~----~f~~~er~~~~~~l~-~~a~~v~~~G  465 (568)
T PRK05537        391 QGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSEL----GFSKEDRDLNILRIG-FVASEITKNG  465 (568)
T ss_pred             CCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCC----CCCHHHHHHHHHHHH-HHHHHHHhCC
Confidence            5779999999999999999999999996      8999998765444311    1111 1111111110 0111222223


Q ss_pred             CEEEEeCCceee---chhHHHhhh-CC--cEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc--cCcEEEec
Q 023749          165 RLVVCAGNGAVQ---SSANLALLR-HG--ISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--TADVTVSL  236 (278)
Q Consensus       165 ~~VI~~g~g~v~---~~~~~~~L~-~~--~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~--~AD~vId~  236 (278)
                      ..||+.. .+..   ...+++.++ .+  ++|||++|.+++.+|.+++.......+.+..++.+|.++|.  .||++|| 
T Consensus       466 g~vI~~~-~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~Ll~~~~~~~i~~l~~~R~~yy~p~~Adl~ID-  543 (568)
T PRK05537        466 GIAICAP-IAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKGLYAKAREGKIKGFTGISDPYEPPANPELVID-  543 (568)
T ss_pred             CEEEEEe-CCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhccccccccchhchhhccccccccccCCCCCcEEEE-
Confidence            3333221 0111   134566665 34  58999999999999944433322224567788889999885  5999998 


Q ss_pred             CcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          237 QKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       237 ~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                                 |+..++++++++|++++.+
T Consensus       544 -----------t~~~s~~eiv~~Il~~L~~  562 (568)
T PRK05537        544 -----------TTNVTPDECAHKILLYLEE  562 (568)
T ss_pred             -----------CCCCCHHHHHHHHHHHHHH
Confidence                       6789999999999999875

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.65  E-value=8.9e-16  Score=132.54  Aligned_cols=158  Identities=15%  Similarity=0.153  Sum_probs=100.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHH--------------
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVL--------------  157 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl--------------  157 (278)
                      +|..|+|+|++||||||+++.|+..++..+++.|..+..... ....+.+...+++.++.+|...+              
T Consensus         1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~   79 (186)
T PRK10078          1 MGKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPAS-AGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVG   79 (186)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccc-hhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCc
Confidence            467899999999999999999999888888887776543322 22223333333444444332221              


Q ss_pred             ---HHHHcCCCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccccCc-
Q 023749          158 ---KQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYATAD-  231 (278)
Q Consensus       158 ---~~l~~~~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~~AD-  231 (278)
                         .+....+..||..|+..+. ....+.+. ...+|||++|.+++.+| ..|+++.   .+.+.+.+ +|.+.|..+| 
T Consensus        80 ~~~~~~l~~g~~VI~~G~~~~~-~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~---~~~i~~rl-~r~~~~~~ad~  154 (186)
T PRK10078         80 IEIDLWLHAGFDVLVNGSRAHL-PQARARYQSALLPVCLQVSPEILRQRLENRGREN---ASEINARL-ARAARYQPQDC  154 (186)
T ss_pred             HHHHHHHhCCCEEEEeChHHHH-HHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCCC---HHHHHHHH-HHhhhhccCCE
Confidence               1222334556765543222 22333333 45789999999999999 6665543   23454544 3455566677 


Q ss_pred             EEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          232 VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       232 ~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                      .+|+             ++.++++++++|.+++...-
T Consensus       155 ~vi~-------------~~~s~ee~~~~i~~~l~~~~  178 (186)
T PRK10078        155 HTLN-------------NDGSLRQSVDTLLTLLHLSQ  178 (186)
T ss_pred             EEEe-------------CCCCHHHHHHHHHHHHhhcC
Confidence            5666             35799999999999997554

>PRK06762 hypothetical protein; Provisional

Probab=99.65  E-value=3.6e-15  Score=125.80  Aligned_cols=152  Identities=13%  Similarity=0.051  Sum_probs=97.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh--CCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEE
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC  169 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L--g~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~  169 (278)
                      +++.|+|+|+|||||||+|+.|++.+  ++.+++.|.+.....+...      ..+........ .........+..||.
T Consensus         1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~------~~~~~~~~~~~-~~~~~~~~~g~~vil   73 (166)
T PRK06762          1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKD------GPGNLSIDLIE-QLVRYGLGHCEFVIL   73 (166)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccC------CCCCcCHHHHH-HHHHHHHhCCCEEEE
Confidence            46899999999999999999999999  5778898887765543111      00111111111 122223334455554


Q ss_pred             eCCceeechh---HHHhhh--C---CcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccccCcEEEecCccc
Q 023749          170 AGNGAVQSSA---NLALLR--H---GISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVA  240 (278)
Q Consensus       170 ~g~g~v~~~~---~~~~L~--~---~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~~AD~vId~~~va  240 (278)
                      .+.  .....   .+..+.  .   ..+|||++|++++.+| ..|++...-..+.+..+|.+++..+ .++.+++     
T Consensus        74 d~~--~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~-----  145 (166)
T PRK06762         74 EGI--LNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPHDTLG-VIGETIF-----  145 (166)
T ss_pred             chh--hccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhcCCcC-CCCeEEe-----
Confidence            332  11111   122222  2   3789999999999999 5565422223578888898888765 4677776     


Q ss_pred             ccccccCCCCCCHHHHHHHHHHHhh
Q 023749          241 SQLGYDDLDAVTTEDMTLEVKWLYN  265 (278)
Q Consensus       241 ~~~~~~Dts~~tpeeva~~I~~~i~  265 (278)
                             |++.+++|++++|+..+.
T Consensus       146 -------~~~~~~~~v~~~i~~~~~  163 (166)
T PRK06762        146 -------TDNLSLKDIFDAILTDIG  163 (166)
T ss_pred             -------cCCCCHHHHHHHHHHHhc
Confidence                   578999999999998764

>PRK09169 hypothetical protein; Validated

Probab=99.65  E-value=1.3e-15  Score=165.60  Aligned_cols=148  Identities=11%  Similarity=0.005  Sum_probs=128.1

Q ss_pred             HhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCC
Q 023749           85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG  164 (278)
Q Consensus        85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~  164 (278)
                      .+....|.+..|+|+|++|+||||+++.|++.|++.|+|+|..+++..| ++|.++|..+|  .|++.|...+.++.. .
T Consensus      2102 ~~~v~rL~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~G-rkI~rIFa~eG--~FRe~Eaa~V~Dllr-~ 2177 (2316)
T PRK09169       2102 AELVERLGAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIG-KKIARIQALRG--LSPEQAAARVRDALR-W 2177 (2316)
T ss_pred             HHHHHHHhhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhC-CCHHHHHHhcC--chHHHHHHHHHHHhc-C
Confidence            4444578899999999999999999999999999999999999999999 99999999988  899999999998886 6


Q ss_pred             CEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh--hcCCCC---CCCh-------HHHHHHHHHHhhhccc-cC
Q 023749          165 RLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM--DHSGFP---ESEV-------LPQLFALYKEMRDGYA-TA  230 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R--~~r~rp---~~~~-------~~~l~~~~~er~~~Y~-~A  230 (278)
                      ..||++|+|++..+.++..|+ .|++|||..+.+++.+|  ...+||   ..+.       ...+.+++.+|.+.|+ .+
T Consensus      2178 ~vVLSTGGGav~~~enr~~L~~~GlvV~L~an~~tl~~Rty~g~NRPLL~~~~~~FEiQFHT~esl~Lk~eRhpLYEqvA 2257 (2316)
T PRK09169       2178 EVVLPAEGFGAAVEQARQALGAKGLRVMRINNGFAAPDTTYAGLNVNLRTAAGLDFEIQFHTADSLRTKNKTHKLYEKLQ 2257 (2316)
T ss_pred             CeEEeCCCCcccCHHHHHHHHHCCEEEEEECCHHHHHHHhccCCCCccccCCCCccchhccHHHHHHHHHHhHHHHHHhc
Confidence            789999999999999999887 89999999999999999  333454   2222       1455667889999997 69


Q ss_pred             cEEEec
Q 023749          231 DVTVSL  236 (278)
Q Consensus       231 D~vId~  236 (278)
                      |++|+.
T Consensus      2258 Dl~V~~ 2263 (2316)
T PRK09169       2258 DLEVAP 2263 (2316)
T ss_pred             Cccccc
Confidence            999984

>PRK13975 thymidylate kinase; Provisional

Probab=99.63  E-value=2.5e-15  Score=129.72  Aligned_cols=160  Identities=20%  Similarity=0.219  Sum_probs=97.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhC--CceecCchHHH----HHhCC-----CChHHHHHhhchhHhHHHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLVF----EAAGG-----ESAAKAFRESDEKGYQQAETEVLKQLS  161 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg--~~~iD~D~li~----~~~g~-----~~i~ei~~~~ge~~fr~~e~~vl~~l~  161 (278)
                      ++.|+|.|++||||||+++.|+++|+  +.+.+.|..+.    +...+     ..+..+|...+.+.|++++..    +.
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~----~~   77 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEED----LK   77 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHH----Hc
Confidence            68999999999999999999999999  44455554332    22211     112334545555555544322    21


Q ss_pred             cCCCEEEEeC-----------Cceeec---hhHHHhhhCCcEEEEEcCHHHHHhh-hcCCCCCC---ChHHHHHHHHHHh
Q 023749          162 SMGRLVVCAG-----------NGAVQS---SANLALLRHGISLWIDVPPGMVARM-DHSGFPES---EVLPQLFALYKEM  223 (278)
Q Consensus       162 ~~~~~VI~~g-----------~g~v~~---~~~~~~L~~~~vV~L~a~~e~l~~R-~~r~rp~~---~~~~~l~~~~~er  223 (278)
                       . +.||...           +|....   ..+...++++++|||++|++++.+| ..|+++..   +..+.+...|.++
T Consensus        78 -~-~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~~y~~~  155 (196)
T PRK13975         78 -K-RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEKYLEL  155 (196)
T ss_pred             -C-CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence             2 3455431           111110   0111112368999999999999999 66665422   2223445555554


Q ss_pred             hh---ccc-cCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCCC
Q 023749          224 RD---GYA-TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASISD  270 (278)
Q Consensus       224 ~~---~Y~-~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~~  270 (278)
                      ..   .+. .+.++||            +++.++++++++|.+.+..+++|
T Consensus       156 ~~~~~~~~~~~~~~Id------------~~~~~~eev~~~I~~~i~~~~~~  194 (196)
T PRK13975        156 ANNEKFMPKYGFIVID------------TTNKSIEEVFNEILNKIKDKIPD  194 (196)
T ss_pred             HhhcccCCcCCEEEEE------------CCCCCHHHHHHHHHHHHHHhCCc
Confidence            43   111 2456776            56799999999999999998876

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.62  E-value=2.3e-14  Score=120.56  Aligned_cols=151  Identities=12%  Similarity=0.136  Sum_probs=90.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC--CChHHHHHh--hchhHhHHHHHHHHHHHH-cCCCEEE
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ESAAKAFRE--SDEKGYQQAETEVLKQLS-SMGRLVV  168 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~--~~i~ei~~~--~ge~~fr~~e~~vl~~l~-~~~~~VI  168 (278)
                      +.|+|+|++||||||+|+.|++++|+++++.|+++++....  .+..++...  ........+. ..+..+. ...++||
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~Vi   79 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKID-RRIHEIALKEKNVVL   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHH-HHHHHHHhcCCCEEE
Confidence            47999999999999999999999999999998877665421  333322111  1111111112 2233333 3455666


Q ss_pred             EeCC-ceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcC-CCCCCChHHHHHHHHHHhhhccc-----------cCcEEE
Q 023749          169 CAGN-GAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQLFALYKEMRDGYA-----------TADVTV  234 (278)
Q Consensus       169 ~~g~-g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~l~~~~~er~~~Y~-----------~AD~vI  234 (278)
                      .... ++...      -..+++|||++|++++.+| ..| +.+.++..+.+......|...|.           .-|++|
T Consensus        80 ~g~~~~~~~~------~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~ydl~i  153 (171)
T TIGR02173        80 ESRLAGWIVR------EYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDDLSIYDLVI  153 (171)
T ss_pred             Eecccceeec------CCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEEE
Confidence            4211 11110      0146899999999999999 433 44433333444333222222221           247787


Q ss_pred             ecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749          235 SLQKVASQLGYDDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       235 d~~~va~~~~~~Dts~~tpeeva~~I~~~i  264 (278)
                      |            |+..++++ ++.|..++
T Consensus       154 ~------------t~~~~~~~-~~~i~~~~  170 (171)
T TIGR02173       154 N------------TSNWDPNN-VDIILDAL  170 (171)
T ss_pred             E------------CCCCCHHH-HHHHHHHh
Confidence            7            89999999 99998775

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK14530 adenylate kinase; Provisional

Probab=99.61  E-value=3.1e-14  Score=125.57  Aligned_cols=107  Identities=14%  Similarity=0.118  Sum_probs=72.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhh---------chhHhHHHHHHHHHHHH-
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRES---------DEKGYQQAETEVLKQLS-  161 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~---------ge~~fr~~e~~vl~~l~-  161 (278)
                      .+++|+|+|+|||||||+|+.||+++|++++++++++++..+ .++.+.....         |.....+....++.... 
T Consensus         2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~-~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~   80 (215)
T PRK14530          2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQ-MDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALS   80 (215)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhcc-CCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            577899999999999999999999999999999999988664 3332222211         21112233344444443 


Q ss_pred             cCCCEEEEeCCceeechhHHHhhh----CCcEEEEEcCHHHHHhh
Q 023749          162 SMGRLVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM  202 (278)
Q Consensus       162 ~~~~~VI~~g~g~v~~~~~~~~L~----~~~vV~L~a~~e~l~~R  202 (278)
                      ....+|++   |+.....+.+.|.    .+++|||++|.+++.+|
T Consensus        81 ~~~~~Ild---G~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~R  122 (215)
T PRK14530         81 DADGFVLD---GYPRNLEQAEYLESITDLDVVLYLDVSEEELVDR  122 (215)
T ss_pred             cCCCEEEc---CCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHH
Confidence            33456664   3444444444442    67999999999999999

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.60  E-value=2.7e-14  Score=120.64  Aligned_cols=152  Identities=20%  Similarity=0.274  Sum_probs=97.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh---CCCChHHHHHhhchhHh---HHHHHHHHHHHHcCCCEE
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA---GGESAAKAFRESDEKGY---QQAETEVLKQLSSMGRLV  167 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~---g~~~i~ei~~~~ge~~f---r~~e~~vl~~l~~~~~~V  167 (278)
                      +.|.+.|+|||||||+|+.||+.+|+++++++.+++++.   | +++.++.. ..++.+   ..+... ...++..+++|
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~g-msl~ef~~-~AE~~p~iD~~iD~r-q~e~a~~~nvV   77 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERG-MSLEEFSR-YAEEDPEIDKEIDRR-QKELAKEGNVV   77 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcC-CCHHHHHH-HHhcCchhhHHHHHH-HHHHHHcCCeE
Confidence            579999999999999999999999999999999987754   5 88776543 333322   222222 33455556665


Q ss_pred             EEeCCceeechhHHHhhh--CCcEEEEEcCHHHHHhh-hcC-CCCCCChHHHH-HH---HHHHhhhccc-------cCcE
Q 023749          168 VCAGNGAVQSSANLALLR--HGISLWIDVPPGMVARM-DHS-GFPESEVLPQL-FA---LYKEMRDGYA-------TADV  232 (278)
Q Consensus       168 I~~g~g~v~~~~~~~~L~--~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~l-~~---~~~er~~~Y~-------~AD~  232 (278)
                      +. |.     -..| ..+  +++.|||.+|.+++++| .+| +.+..+.+... .+   ...+....|.       ..|+
T Consensus        78 le-gr-----LA~W-i~k~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidDlSiyDL  150 (179)
T COG1102          78 LE-GR-----LAGW-IVREYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDIDDLSIYDL  150 (179)
T ss_pred             Eh-hh-----hHHH-HhccccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccceeeEE
Confidence            53 21     1122 123  68999999999999999 444 33322222221 11   1122233343       2455


Q ss_pred             EEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          233 TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       233 vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                      |||            |+..+|+++..-|...+...
T Consensus       151 Vin------------Ts~~~~~~v~~il~~aid~~  173 (179)
T COG1102         151 VIN------------TSKWDPEEVFLILLDAIDAL  173 (179)
T ss_pred             EEe------------cccCCHHHHHHHHHHHHHhh
Confidence            665            89999999999988888754

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.58  E-value=1.1e-13  Score=116.28  Aligned_cols=149  Identities=11%  Similarity=0.075  Sum_probs=95.6

Q ss_pred             EEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH-----H-hCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEE
Q 023749           96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE-----A-AGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC  169 (278)
Q Consensus        96 I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~-----~-~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~  169 (278)
                      |+|+|++||||||+|+.|++.+|++++|.|.+...     . .| ....   ....+.+++.+...+...+......|++
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~Vi~   76 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAG-IPLN---DDDRWPWLQNLNDASTAAAAKNKVGIIT   76 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcC-CCCC---hhhHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence            57999999999999999999999999999997422     1 12 2211   1233455666555544444444555776


Q ss_pred             eCCceeechhHHHhhh-C--C-cEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhc-cccCc-EEEecCccccc
Q 023749          170 AGNGAVQSSANLALLR-H--G-ISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDG-YATAD-VTVSLQKVASQ  242 (278)
Q Consensus       170 ~g~g~v~~~~~~~~L~-~--~-~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~-Y~~AD-~vId~~~va~~  242 (278)
                      ++   ......++.++ .  . .+|||++|++++.+| ..|+.... ..+.+..+|.+.... +..++ .+||       
T Consensus        77 ~t---~~~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~-~~~~i~~~~~~~~~~~~~e~~~~~id-------  145 (163)
T TIGR01313        77 CS---ALKRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGHFM-KADMLESQFAALEEPLADETDVLRVD-------  145 (163)
T ss_pred             ec---ccHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCCCC-CHHHHHHHHHHhCCCCCCCCceEEEE-------
Confidence            64   23444455454 2  2 579999999999999 55542111 235566666543332 32334 3566       


Q ss_pred             ccccCCCCCCHHHHHHHHHHHhh
Q 023749          243 LGYDDLDAVTTEDMTLEVKWLYN  265 (278)
Q Consensus       243 ~~~~Dts~~tpeeva~~I~~~i~  265 (278)
                           + ..++|++.++|.+++.
T Consensus       146 -----~-~~~~~~~~~~~~~~~~  162 (163)
T TIGR01313       146 -----I-DQPLEGVEEDCIAVVL  162 (163)
T ss_pred             -----C-CCCHHHHHHHHHHHHh
Confidence                 2 4689999999988774

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.57  E-value=1e-13  Score=122.03  Aligned_cols=166  Identities=19%  Similarity=0.265  Sum_probs=97.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh------C--CCChH---HHHHh-------------hchhH-
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA------G--GESAA---KAFRE-------------SDEKG-  148 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~------g--~~~i~---ei~~~-------------~ge~~-  148 (278)
                      ..|.|-||+||||||+|+.||++|||.|+|++.+++...      +  ..+..   ++...             .|++. 
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedvs   84 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDVS   84 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchhh
Confidence            689999999999999999999999999999998876521      1  00100   01000             00010 


Q ss_pred             --hH---------------HHHHHH---HHHHHcCCCEEEEeCC--ceeechhHHHhhh-CCcEEEEEcCHHHHHhh--h
Q 023749          149 --YQ---------------QAETEV---LKQLSSMGRLVVCAGN--GAVQSSANLALLR-HGISLWIDVPPGMVARM--D  203 (278)
Q Consensus       149 --fr---------------~~e~~v---l~~l~~~~~~VI~~g~--g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R--~  203 (278)
                        .+               .....+   ..+++...+.+|..|-  |.+.       +. ..+-|||++++|++++|  +
T Consensus        85 ~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGTvV-------~PdA~lKiFLtAS~e~RA~RR~~  157 (222)
T COG0283          85 EEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGTVV-------FPDAELKIFLTASPEERAERRYK  157 (222)
T ss_pred             hhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcceE-------CCCCCeEEEEeCCHHHHHHHHHH
Confidence              11               000011   1122222222333332  1222       22 46889999999999998  2


Q ss_pred             c-CCCCCCChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          204 H-SGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       204 ~-r~rp~~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                      . ......+.++.+.+-..+|+..  ...-.+++-+.|...-++||+++|.||++++|++++.+.+
T Consensus       158 q~~~~g~~~~~e~ll~eI~~RD~~--D~~R~~~PLk~A~DA~~iDTs~msieeVv~~il~~~~~~~  221 (222)
T COG0283         158 QLQAKGFSEVFEELLAEIKERDER--DSNRAVAPLKPAEDALLLDTSSLSIEEVVEKILELIRQKL  221 (222)
T ss_pred             HHHhccCcchHHHHHHHHHHhhhc--cccCcCCCCcCCCCeEEEECCCCcHHHHHHHHHHHHHHhh
Confidence            1 1111122255665655666542  1223444445566667788999999999999999998543

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.57  E-value=1.7e-14  Score=122.87  Aligned_cols=157  Identities=17%  Similarity=0.201  Sum_probs=96.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCE
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL  166 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~  166 (278)
                      .|.+|+|+|+|||||||+|+.|+..+.     +.++|.|.+......+...   ..+.....++.+. .+...+...+..
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~---~~~~r~~~~~~~~-~~a~~~~~~g~~   78 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGF---SKEDRDTNIRRIG-FVANLLTRHGVI   78 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCC---ChhhHHHHHHHHH-HHHHHHHhCCCE
Confidence            578999999999999999999999883     6778999876554321111   1111233343332 111222233433


Q ss_pred             EEEeCCceeechhHHHhhh----CCcEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc--cCcEEEecCccc
Q 023749          167 VVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--TADVTVSLQKVA  240 (278)
Q Consensus       167 VI~~g~g~v~~~~~~~~L~----~~~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~--~AD~vId~~~va  240 (278)
                      |+.. +... ....++.++    ...+|||++|++++.+|..++.......+.+..++.+|.+.|.  .||++|+     
T Consensus        79 vi~~-~~~~-~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~~~~~~~~~~p~~ad~~i~-----  151 (175)
T PRK00889         79 VLVS-AISP-YRETREEVRANIGNFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHFTGIDDPYEPPLNPEVECR-----  151 (175)
T ss_pred             EEEe-cCCC-CHHHHHHHHhhcCCeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCCcccCCCCCCCCCCcEEEE-----
Confidence            4432 2222 233344333    3468999999999999942221100001224445667888885  4899988     


Q ss_pred             ccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          241 SQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       241 ~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                             |+..++++++++|++.+..
T Consensus       152 -------~~~~~~~~~~~~i~~~l~~  170 (175)
T PRK00889        152 -------TDLESLEESVDKVLQKLEE  170 (175)
T ss_pred             -------CCCCCHHHHHHHHHHHHHH
Confidence                   5678999999999999863

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.55  E-value=3.3e-14  Score=124.02  Aligned_cols=157  Identities=14%  Similarity=0.192  Sum_probs=95.9

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh-----CCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR  165 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L-----g~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~  165 (278)
                      -+|..|+|+|++||||||+++.|+..+     +..++|.|.+.+...+...   +......+.++.+.. +...+...+.
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~---~~~~~~~~~~~~l~~-~a~~~~~~G~   97 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLG---FSDADRKENIRRVGE-VAKLMVDAGL   97 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCC---cCcccHHHHHHHHHH-HHHHHhhCCC
Confidence            378899999999999999999999987     4678898887655432110   111112233333211 2223333454


Q ss_pred             EEEEeCCceeechhHH----Hhhh-CCc-EEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc--c-CcEEEec
Q 023749          166 LVVCAGNGAVQSSANL----ALLR-HGI-SLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--T-ADVTVSL  236 (278)
Q Consensus       166 ~VI~~g~g~v~~~~~~----~~L~-~~~-vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~--~-AD~vId~  236 (278)
                      .||.+...  .....+    +.++ .++ +|||++|++++.+|..|+.......+.+..++.+|.+ |+  . ||++|+ 
T Consensus        98 ~VI~~~~~--~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~r~l~~~~~~~~~~~l~~~r~~-Y~~p~~ad~~Id-  173 (198)
T PRK03846         98 VVLTAFIS--PHRAERQMVRERLGEGEFIEVFVDTPLAICEARDPKGLYKKARAGEIRNFTGIDSV-YEAPESPEIHLD-  173 (198)
T ss_pred             EEEEEeCC--CCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCchhHHHHhhcCCccCccccccc-CCCCCCCCEEEE-
Confidence            55543211  112222    3333 455 7999999999999932321110001223345566666 76  4 899998 


Q ss_pred             CcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          237 QKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       237 ~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                                 |++.++++++++|++.+.+
T Consensus       174 -----------t~~~~~~~vv~~Il~~l~~  192 (198)
T PRK03846        174 -----------TGEQLVTNLVEQLLDYLRQ  192 (198)
T ss_pred             -----------CCCCCHHHHHHHHHHHHHH
Confidence                       6789999999999999864

>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.55  E-value=1.9e-13  Score=114.77  Aligned_cols=154  Identities=16%  Similarity=0.176  Sum_probs=104.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHH-----HHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEE
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF-----EAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC  169 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~-----~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~  169 (278)
                      .|+++|++||||||+|+.|+++||++|+|.|++..     ++..+..   +-+++++.|...+...+...+++.+..|++
T Consensus        14 ~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~Gip---LnD~DR~pWL~~i~~~~~~~l~~~q~vVlA   90 (191)
T KOG3354|consen   14 VIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIP---LNDDDRWPWLKKIAVELRKALASGQGVVLA   90 (191)
T ss_pred             eEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCC---CCcccccHHHHHHHHHHHHHhhcCCeEEEE
Confidence            79999999999999999999999999999999853     3322222   223456667777766667777777777777


Q ss_pred             eCCceeechhHHHhhhC--------------CcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccc-cCcE-
Q 023749          170 AGNGAVQSSANLALLRH--------------GISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYA-TADV-  232 (278)
Q Consensus       170 ~g~g~v~~~~~~~~L~~--------------~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~-~AD~-  232 (278)
                      |..   +....++.|+.              -.+|||.++.|++.+| .+|.-..- ..+.++.+|+--+..-. ..|+ 
T Consensus        91 CSa---LKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFM-p~~lleSQf~~LE~p~~~e~div  166 (191)
T KOG3354|consen   91 CSA---LKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFM-PADLLESQFATLEAPDADEEDIV  166 (191)
T ss_pred             hHH---HHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccC-CHHHHHHHHHhccCCCCCccceE
Confidence            642   23334444431              1479999999999999 65543221 23456677765443221 2232 


Q ss_pred             EEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          233 TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       233 vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                      .|+            ....++|++++.|.+-++-.
T Consensus       167 ~is------------v~~~~~e~iv~tI~k~~~~~  189 (191)
T KOG3354|consen  167 TIS------------VKTYSVEEIVDTIVKMVALN  189 (191)
T ss_pred             EEe------------eccCCHHHHHHHHHHHHHhh
Confidence            444            34589999999998877643

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.54  E-value=3.1e-13  Score=133.45  Aligned_cols=160  Identities=18%  Similarity=0.176  Sum_probs=102.1

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC-----CCChH--HHHHh--------------hc----
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-----GESAA--KAFRE--------------SD----  145 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g-----~~~i~--ei~~~--------------~g----  145 (278)
                      ..++.|.|.|++||||||+|+.||++||+.++|+|.+++....     +.+..  +.+..              .+    
T Consensus       282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~i~  361 (512)
T PRK13477        282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKPSSGSPQRVW  361 (512)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeeccCCCCCceEE
Confidence            3788999999999999999999999999999999998766310     01110  00000              00    


Q ss_pred             ---hh------------------HhHHHHHH---HHHHHHcCCCEEEEeCC--ceeechhHHHhhhCCcEEEEEcCHHHH
Q 023749          146 ---EK------------------GYQQAETE---VLKQLSSMGRLVVCAGN--GAVQSSANLALLRHGISLWIDVPPGMV  199 (278)
Q Consensus       146 ---e~------------------~fr~~e~~---vl~~l~~~~~~VI~~g~--g~v~~~~~~~~L~~~~vV~L~a~~e~l  199 (278)
                         .+                  .+..+...   ...++...++ +|..|.  |++..+.      +++.|||++|++++
T Consensus       362 ~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~-iV~eGRDigtvV~P~------AdlKIfL~As~evR  434 (512)
T PRK13477        362 INGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGG-LVAEGRDIGTHVFPD------AELKIFLTASVEER  434 (512)
T ss_pred             eCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCC-EEEEcccceeEEcCC------CCEEEEEECCHHHH
Confidence               00                  00011111   1112222233 333332  2232211      56899999999999


Q ss_pred             Hhh--hc-CCCCC-CChHHHHHHHHHHhh---------hcccc-CcEEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749          200 ARM--DH-SGFPE-SEVLPQLFALYKEMR---------DGYAT-ADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN  265 (278)
Q Consensus       200 ~~R--~~-r~rp~-~~~~~~l~~~~~er~---------~~Y~~-AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~  265 (278)
                      .+|  .. ..||. ....+.+.+.+.+|+         ++|.. ++++||            |+++|+++++++|++.+.
T Consensus       435 a~RR~~~l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~ID------------Ts~lsieeVv~~Il~~i~  502 (512)
T PRK13477        435 ARRRALDLQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELI------------TDGLSIEEVVDKIIDLYR  502 (512)
T ss_pred             HHHHHhhhhhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEE------------CCCCCHHHHHHHHHHHHH
Confidence            998  22 23443 222577888888998         88875 567887            789999999999999998


Q ss_pred             hcCC
Q 023749          266 ASIS  269 (278)
Q Consensus       266 ~~~~  269 (278)
                      +.++
T Consensus       503 ~~~~  506 (512)
T PRK13477        503 DRIP  506 (512)
T ss_pred             HhCc
Confidence            7544

>PRK01184 hypothetical protein; Provisional

Probab=99.54  E-value=3.3e-13  Score=115.72  Aligned_cols=157  Identities=15%  Similarity=0.139  Sum_probs=89.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHH--------HHHHHHHc-CC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET--------EVLKQLSS-MG  164 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~--------~vl~~l~~-~~  164 (278)
                      +.|+|+|+|||||||+++ +++++|++++++|+++++......++.+....|+..+...+.        .+...+.. ..
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~   80 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIREKGD   80 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHhcCC
Confidence            479999999999999998 678899999999887766531011111111222222111111        11122222 12


Q ss_pred             CEEEEeCCceeechhHHHhh----h-CCcEEEEEcCHHHHHhh-hcCCCCCC-ChHHHHHHHHHHh-----hhccccCcE
Q 023749          165 RLVVCAGNGAVQSSANLALL----R-HGISLWIDVPPGMVARM-DHSGFPES-EVLPQLFALYKEM-----RDGYATADV  232 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~~~~~L----~-~~~vV~L~a~~e~l~~R-~~r~rp~~-~~~~~l~~~~~er-----~~~Y~~AD~  232 (278)
                      ..||..|-   ......+.+    . ...+|+|++|.+++.+| ..|+++.. ...+.+.+..+..     ...+..||+
T Consensus        81 ~~vvidg~---r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~~~ad~  157 (184)
T PRK01184         81 EVVVIDGV---RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVIALADY  157 (184)
T ss_pred             CcEEEeCC---CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHHHhcCE
Confidence            33443331   122222222    2 33799999999999999 55665432 1123333332221     113446999


Q ss_pred             EEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          233 TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       233 vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                      +|+|             +.+++++..+|.+++...
T Consensus       158 vI~N-------------~~~~~~l~~~v~~~~~~~  179 (184)
T PRK01184        158 MIVN-------------DSTLEEFRARVRKLLERI  179 (184)
T ss_pred             EEeC-------------CCCHHHHHHHHHHHHHHH
Confidence            9985             458999999999887643

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.54  E-value=5.6e-13  Score=113.87  Aligned_cols=153  Identities=12%  Similarity=0.214  Sum_probs=89.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHHHHHHHHHHHcC--CCEE
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVLKQLSSM--GRLV  167 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~e~~vl~~l~~~--~~~V  167 (278)
                      +|+|+|+|||||||+|+.||+++|++++++++++++.....+     +.+++ ..|.....+....++.+....  ...+
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~~~~~~~   79 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMI-KNGKIVPSEVTVKLLKNAIQADGSKKF   79 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHH-HCCCcCCHHHHHHHHHHHHhccCCCcE
Confidence            489999999999999999999999999999888776532111     22222 233333334433444443321  2223


Q ss_pred             EEeCCceeechhHHH----hh----hCCcEEEEEcCHHHHHhh-hcCC----CCCCChHHHHHHHHHHh-------hhcc
Q 023749          168 VCAGNGAVQSSANLA----LL----RHGISLWIDVPPGMVARM-DHSG----FPESEVLPQLFALYKEM-------RDGY  227 (278)
Q Consensus       168 I~~g~g~v~~~~~~~----~L----~~~~vV~L~a~~e~l~~R-~~r~----rp~~~~~~~l~~~~~er-------~~~Y  227 (278)
                      |..|  ++.+..+..    .+    ..+++|||++|++++.+| ..|+    +.. +..+.+.+.+..+       ...|
T Consensus        80 vlDg--~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~d-d~~e~~~~r~~~y~~~~~~i~~~~  156 (183)
T TIGR01359        80 LIDG--FPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVD-DNIESIKKRFRTYNEQTLPVIEHY  156 (183)
T ss_pred             EEeC--CCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3223  222222222    11    146799999999999999 5443    232 2234443333222       1223


Q ss_pred             ccCc--EEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749          228 ATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       228 ~~AD--~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i  264 (278)
                      +..+  .+||             ...+++++.++|.+++
T Consensus       157 ~~~~~~~~Id-------------~~~~~~~v~~~i~~~l  182 (183)
T TIGR01359       157 ENKGKVKEIN-------------AEGSVEEVFEDVEKIF  182 (183)
T ss_pred             HhCCCEEEEE-------------CCCCHHHHHHHHHHHh
Confidence            3333  3565             3479999999998876

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.53  E-value=2.5e-13  Score=113.16  Aligned_cols=149  Identities=14%  Similarity=0.148  Sum_probs=97.5

Q ss_pred             EccCCCcHHHHHHHHHHHhCCceecCchHHH-----HHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749           99 VGMNNAIKTHLGKFLADALRYYYFDSDSLVF-----EAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (278)
Q Consensus        99 ~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~-----~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g  173 (278)
                      +|.+||||||+|+.||++||+.|+|.|++..     ++..+..+.   +++++.|...+...+..........||+|.  
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~---DdDR~pWL~~l~~~~~~~~~~~~~~vi~CS--   75 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLN---DDDRWPWLEALGDAAASLAQKNKHVVIACS--   75 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCC---cchhhHHHHHHHHHHHHhhcCCCceEEecH--
Confidence            5999999999999999999999999999853     333323322   233444554444333322222333556553  


Q ss_pred             eeechhHHHhhh---CC-cEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccccCc-EEEecCcccccccccC
Q 023749          174 AVQSSANLALLR---HG-ISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYATAD-VTVSLQKVASQLGYDD  247 (278)
Q Consensus       174 ~v~~~~~~~~L~---~~-~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~~AD-~vId~~~va~~~~~~D  247 (278)
                       .+....++.|+   .+ ..|||+.+.+++.+| ..|....- ....+..||+.-++.-...| ++||.           
T Consensus        76 -ALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM-~~~ll~SQfa~LE~P~~de~vi~idi-----------  142 (161)
T COG3265          76 -ALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHFM-PASLLDSQFATLEEPGADEDVLTIDI-----------  142 (161)
T ss_pred             -HHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCC-CHHHHHHHHHHhcCCCCCCCEEEeeC-----------
Confidence             23455667777   23 579999999999999 55543322 23567777776665443223 46663           


Q ss_pred             CCCCCHHHHHHHHHHHhhhc
Q 023749          248 LDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       248 ts~~tpeeva~~I~~~i~~~  267 (278)
                        +.++|+++++++++++..
T Consensus       143 --~~~~e~vv~~~~~~l~~~  160 (161)
T COG3265         143 --DQPPEEVVAQALAWLKEG  160 (161)
T ss_pred             --CCCHHHHHHHHHHHHhcc
Confidence              579999999999998753

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.53  E-value=2.4e-13  Score=116.06  Aligned_cols=156  Identities=12%  Similarity=0.166  Sum_probs=89.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh-CCCC----hHHHHHhhch-----hHhHHHHHHHHHHHHc
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGES----AAKAFRESDE-----KGYQQAETEVLKQLSS  162 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~-g~~~----i~ei~~~~ge-----~~fr~~e~~vl~~l~~  162 (278)
                      .+.|+|+|+|||||||+|+.|++.+|+.++++++++++.. +...    +..++. .+.     ..+..++..+...+. 
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~-   80 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIME-SGDLVPLDTVLDLLKDAMVAALG-   80 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcccC-
Confidence            4689999999999999999999999999999988876643 2111    112221 121     111111111111111 


Q ss_pred             CCCEEEEeCCceeechhHHHhh----h-CCcEEEEEcCHHHHHhh-hcCC----CCCCC---hHHHHHHHHHHhhhc---
Q 023749          163 MGRLVVCAGNGAVQSSANLALL----R-HGISLWIDVPPGMVARM-DHSG----FPESE---VLPQLFALYKEMRDG---  226 (278)
Q Consensus       163 ~~~~VI~~g~g~v~~~~~~~~L----~-~~~vV~L~a~~e~l~~R-~~r~----rp~~~---~~~~l~~~~~er~~~---  226 (278)
                      .+..+|..|.  .........+    . .+++|||++|++++.+| ..|+    ++...   ..+.+...++++.+.   
T Consensus        81 ~~~~~i~dg~--~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~  158 (188)
T TIGR01360        81 TSKGFLIDGY--PREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAY  158 (188)
T ss_pred             cCCeEEEeCC--CCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHH
Confidence            2233343332  1111112222    2 56899999999999999 4443    22222   223344444444432   


Q ss_pred             cc-cCcE-EEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749          227 YA-TADV-TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN  265 (278)
Q Consensus       227 Y~-~AD~-vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~  265 (278)
                      |+ .+++ +||             ...+++++.++|...+.
T Consensus       159 y~~~~~~~~id-------------~~~~~~~v~~~i~~~l~  186 (188)
T TIGR01360       159 YETKGKLRKIN-------------AEGTVDDVFLQVCTAID  186 (188)
T ss_pred             HHhCCCEEEEE-------------CCCCHHHHHHHHHHHHh
Confidence            44 2344 555             46899999999999875

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=99.50  E-value=3.2e-13  Score=115.28  Aligned_cols=147  Identities=18%  Similarity=0.229  Sum_probs=92.3

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHH--HHHHHHHHHcCCCEEEEeC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQA--ETEVLKQLSSMGRLVVCAG  171 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~--e~~vl~~l~~~~~~VI~~g  171 (278)
                      |.|+|+|.||+||||+|+.|+ ++|+.+++..+++.+. | .- . -+++......-++  ....+..+....+.|+.+.
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~-~-~~-~-~~de~r~s~~vD~d~~~~~le~~~~~~~~Ivd~H   75 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN-G-LY-T-EYDELRKSVIVDVDKLRKRLEELLREGSGIVDSH   75 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc-C-Ce-e-ccCCccceEEeeHHHHHHHHHHHhccCCeEeech
Confidence            689999999999999999999 8999999998877653 2 10 0 0000000000011  1111222222344555421


Q ss_pred             CceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHH-----HHHHhhhccccCcEEEecCccccccc
Q 023749          172 NGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFA-----LYKEMRDGYATADVTVSLQKVASQLG  244 (278)
Q Consensus       172 ~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~-----~~~er~~~Y~~AD~vId~~~va~~~~  244 (278)
                              .-.++. .+++|.|.++++++.+| +.||++.+.+.+.+.+     .+.+-...+   +.++.         
T Consensus        76 --------~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~---~~v~e---------  135 (180)
T COG1936          76 --------LSHLLPDCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERF---EAVIE---------  135 (180)
T ss_pred             --------hhhcCCCCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc---CceEE---------
Confidence                    112344 68999999999999999 9999986554444433     222322222   33332         


Q ss_pred             ccCCCCCCHHHHHHHHHHHhhh
Q 023749          245 YDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       245 ~~Dts~~tpeeva~~I~~~i~~  266 (278)
                       +||++.|||+++++|.+.++.
T Consensus       136 -vdtt~~s~ee~~~~i~~ii~~  156 (180)
T COG1936         136 -VDTTNRSPEEVAEEIIDIIGG  156 (180)
T ss_pred             -EECCCCCHHHHHHHHHHHHcc
Confidence             348999999999999999984

>PRK02496 adk adenylate kinase; Provisional

Probab=99.49  E-value=1.4e-12  Score=112.01  Aligned_cols=154  Identities=17%  Similarity=0.169  Sum_probs=91.8

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHHHHHHHHHHHc----CC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVLKQLSS----MG  164 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~e~~vl~~l~~----~~  164 (278)
                      ++|+|+|+|||||||+|+.||+.+|+++++.|+++++.....+     +...+ ..|.....+....++.....    ..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~g~~~~~~~~~~~l~~~l~~~~~~~   80 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYM-DKGELVPDQLVLDLVQERLQQPDAAN   80 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHH-HCCCccCHHHHHHHHHHHHhCcCccC
Confidence            5799999999999999999999999999999998876542111     11122 12332233333333333222    12


Q ss_pred             CEEEEeCCceeechhHH---H-hh-----hCCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhh-------cc
Q 023749          165 RLVVCAGNGAVQSSANL---A-LL-----RHGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRD-------GY  227 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~~~---~-~L-----~~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~-------~Y  227 (278)
                      .+|+ .|  +.......   . .+     ..+++|||++|.+++.+| ..|+++.. ..+.+.+.+..+..       .|
T Consensus        81 g~vl-dG--fPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd-~~~~~~~r~~~y~~~~~~v~~~~  156 (184)
T PRK02496         81 GWIL-DG--FPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDD-TEEVIRRRLEVYREQTAPLIDYY  156 (184)
T ss_pred             CEEE-eC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            2344 23  22111111   1 11     146899999999999999 76766532 23444443333222       34


Q ss_pred             ccCc--EEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749          228 ATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN  265 (278)
Q Consensus       228 ~~AD--~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~  265 (278)
                      +...  +.||             ...+++++.++|...+.
T Consensus       157 ~~~~~~~~Id-------------a~~~~~~V~~~i~~~l~  183 (184)
T PRK02496        157 RDRQKLLTID-------------GNQSVEAVTTELKAALA  183 (184)
T ss_pred             HhcCCEEEEE-------------CCCCHHHHHHHHHHHhC
Confidence            3222  3555             45799999999998773

>PRK06217 hypothetical protein; Validated

Probab=99.49  E-value=9.2e-13  Score=113.43  Aligned_cols=98  Identities=16%  Similarity=0.227  Sum_probs=65.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g  173 (278)
                      ++|+|+|++||||||+|+.|++.+|++++++|.+++...+ ....    ..+...+  .+..++..+.....+||+ |. 
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~-~~~~----~~~~~~~--~~~~~~~~~~~~~~~vi~-G~-   72 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTD-PPFT----TKRPPEE--RLRLLLEDLRPREGWVLS-GS-   72 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCC-CCcc----ccCCHHH--HHHHHHHHHhcCCCEEEE-cc-
Confidence            5799999999999999999999999999999999876443 2110    0111111  122334444444566775 32 


Q ss_pred             eeechhHHHhhh-CCcEEEEEcCHHHHHhh
Q 023749          174 AVQSSANLALLR-HGISLWIDVPPGMVARM  202 (278)
Q Consensus       174 ~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R  202 (278)
                       ... .....+. .+.+|||++|.+++.+|
T Consensus        73 -~~~-~~~~~~~~~d~~i~Ld~~~~~~~~R  100 (183)
T PRK06217         73 -ALG-WGDPLEPLFDLVVFLTIPPELRLER  100 (183)
T ss_pred             -HHH-HHHHHHhhCCEEEEEECCHHHHHHH
Confidence             211 1111223 78999999999999999

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.49  E-value=1.1e-12  Score=112.07  Aligned_cols=154  Identities=14%  Similarity=0.058  Sum_probs=86.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCce--ecCchHHHHHhCCCChH--HH--HHh----hch----hHhHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYY--FDSDSLVFEAAGGESAA--KA--FRE----SDE----KGYQQAETEVL  157 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~--iD~D~li~~~~g~~~i~--ei--~~~----~ge----~~fr~~e~~vl  157 (278)
                      +|+.|+|+|+|||||||+|+.|++.++.++  ++.|.++....+ ....  +.  +..    ..+    ..|.... ..+
T Consensus         1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~   78 (175)
T cd00227           1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPL-KCQDAEGGIEFDGDGGVSPGPEFRLLEGAWY-EAV   78 (175)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcCh-hhcccccccccCccCCcccchHHHHHHHHHH-HHH
Confidence            478999999999999999999999987654  477877654321 0000  00  000    001    1222222 223


Q ss_pred             HHHHcCCCEEEEeCCceeechhHHH---hhh--CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccccCc
Q 023749          158 KQLSSMGRLVVCAGNGAVQSSANLA---LLR--HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYATAD  231 (278)
Q Consensus       158 ~~l~~~~~~VI~~g~g~v~~~~~~~---~L~--~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~~AD  231 (278)
                      ..++..+..||.... +......++   .+.  .-..|||+||.+++.+| ..|+...   ......+++.... ....|
T Consensus        79 ~~~l~~G~~VIvD~~-~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~~---~~~~~~~~~~~~~-~~~~d  153 (175)
T cd00227          79 AAMARAGANVIADDV-FLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDRV---PGQARKQARVVHA-GVEYD  153 (175)
T ss_pred             HHHHhCCCcEEEeee-ccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCcc---chHHHHHHHHhcC-CCcce
Confidence            444444444443221 111122222   222  23679999999999999 5554321   1112222222211 12357


Q ss_pred             EEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749          232 VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       232 ~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i  264 (278)
                      ++||            |+..|++|++++|++.+
T Consensus       154 l~iD------------ts~~s~~e~a~~i~~~l  174 (175)
T cd00227         154 LEVD------------TTHKTPIECARAIAARV  174 (175)
T ss_pred             EEEE------------CCCCCHHHHHHHHHHhc
Confidence            8887            78899999999999876

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK13808 adenylate kinase; Provisional

Probab=99.49  E-value=1.3e-12  Score=122.73  Aligned_cols=157  Identities=13%  Similarity=0.146  Sum_probs=91.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-----CChHHHHHhhchhHhHHHHHHHHH-HHHc---CC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ESAAKAFRESDEKGYQQAETEVLK-QLSS---MG  164 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-----~~i~ei~~~~ge~~fr~~e~~vl~-~l~~---~~  164 (278)
                      ++|+|+|+|||||||+|+.|++.+|++++++++++++....     ..+.+++.. |.....++-..++. .+..   ..
T Consensus         1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~-G~lVPdeiv~~li~e~l~~~~~~~   79 (333)
T PRK13808          1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMAS-GGLVPDEVVVGIISDRIEQPDAAN   79 (333)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHc-CCCCCHHHHHHHHHHHHhcccccC
Confidence            47999999999999999999999999999999999765321     222333322 22111222222222 2221   12


Q ss_pred             CEEEEeCCceeechhHHHh----h-----hCCcEEEEEcCHHHHHhh-hcC-------C---CCCCChHHHHHHH---HH
Q 023749          165 RLVVCAGNGAVQSSANLAL----L-----RHGISLWIDVPPGMVARM-DHS-------G---FPESEVLPQLFAL---YK  221 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~~~~~----L-----~~~~vV~L~a~~e~l~~R-~~r-------~---rp~~~~~~~l~~~---~~  221 (278)
                      .+||+   |++-...+.+.    +     ..+++|||++|++++.+| ..|       +   |.+.+ .+.+...   |.
T Consensus        80 G~ILD---GFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~-~E~i~kRL~~Y~  155 (333)
T PRK13808         80 GFILD---GFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDT-PEVLAKRLASYR  155 (333)
T ss_pred             CEEEe---CCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCC-HHHHHHHHHHHH
Confidence            34443   22222222221    2     257899999999999999 443       1   22222 2333322   22


Q ss_pred             Hh----hhccccCcE--EEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          222 EM----RDGYATADV--TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       222 er----~~~Y~~AD~--vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                      +.    ..+|...+.  +||             ...++|+|.++|..+|....
T Consensus       156 ~~t~PLl~~Y~e~~~lv~ID-------------a~~siEEV~eeI~~~L~~~~  195 (333)
T PRK13808        156 AQTEPLVHYYSEKRKLLTVD-------------GMMTIDEVTREIGRVLAAVG  195 (333)
T ss_pred             HHhHHHHHHhhccCcEEEEE-------------CCCCHHHHHHHHHHHHHHHh
Confidence            22    223443333  444             46899999999999997554

>PRK14531 adenylate kinase; Provisional

Probab=99.49  E-value=1.8e-12  Score=111.67  Aligned_cols=155  Identities=14%  Similarity=0.152  Sum_probs=88.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh-CCCChHHHHH---hhchhHhHHHHHHHH-HHHHc--CCC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGESAAKAFR---ESDEKGYQQAETEVL-KQLSS--MGR  165 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~-g~~~i~ei~~---~~ge~~fr~~e~~vl-~~l~~--~~~  165 (278)
                      .++|+++|+|||||||+|+.||+++|++++++++++++.. ++........   ..|...-.++-..++ ..+..  ...
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g   81 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGG   81 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCc
Confidence            4689999999999999999999999999999988876543 2121111111   123211111111112 22222  233


Q ss_pred             EEEEeCCceeechhHHHh----hh-----CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHH---HHHH-hhh---ccc
Q 023749          166 LVVCAGNGAVQSSANLAL----LR-----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFA---LYKE-MRD---GYA  228 (278)
Q Consensus       166 ~VI~~g~g~v~~~~~~~~----L~-----~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~---~~~e-r~~---~Y~  228 (278)
                      +|++   |++........    +.     .+.+|||++|++++.+| ..|+++.+. .+.+.+   .|.+ ..+   .|.
T Consensus        82 ~ilD---Gfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~-~e~i~~Rl~~y~~~~~pv~~~y~  157 (183)
T PRK14531         82 WLLD---GFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDN-EAVIRNRLEVYREKTAPLIDHYR  157 (183)
T ss_pred             EEEe---CCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4442   23332222221    11     35799999999999999 777776432 222222   2222 222   233


Q ss_pred             cCc--EEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749          229 TAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       229 ~AD--~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i  264 (278)
                      .-+  .+||             ...+++++..+|...+
T Consensus       158 ~~~~~~~id-------------~~~~~~~v~~~i~~~l  182 (183)
T PRK14531        158 QRGLLQSVE-------------AQGSIEAITERIEKVL  182 (183)
T ss_pred             hcCCEEEEE-------------CCCCHHHHHHHHHHHh
Confidence            222  2444             4579999999998876

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.49  E-value=5.3e-13  Score=117.70  Aligned_cols=160  Identities=12%  Similarity=0.075  Sum_probs=99.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCC-ChHHHHHhhchhHh---------------H-----
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-SAAKAFRESDEKGY---------------Q-----  150 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~-~i~ei~~~~ge~~f---------------r-----  150 (278)
                      .+..|.|+|.+||||||+++.|++.+|++++|+|.+.++.+... ...++...+|++.+               .     
T Consensus         5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~   84 (204)
T PRK14733          5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAK   84 (204)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHH
Confidence            45689999999999999999999999999999999988876521 12345555555433               1     


Q ss_pred             -HHHH--------HHHHHHHcC-CCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh--hcCCCCCCChHHHHH
Q 023749          151 -QAET--------EVLKQLSSM-GRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM--DHSGFPESEVLPQLF  217 (278)
Q Consensus       151 -~~e~--------~vl~~l~~~-~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R--~~r~rp~~~~~~~l~  217 (278)
                       .++.        ++.+.+... ...++...  ..+.+.++..-. .+.+|+++||.+++.+|  .+++.+.++....+.
T Consensus        85 ~~Le~i~HP~V~~~~~~~~~~~~~~~vv~ei--pLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~a~~ri~  162 (204)
T PRK14733         85 KWLEDYLHPVINKEIKKQVKESDTVMTIVDI--PLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGKNRQQAVAFIN  162 (204)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhcCCCeEEEEe--chhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence             0110        111111111 11222111  111222221111 57899999999999999  444665444555565


Q ss_pred             HHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          218 ALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       218 ~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                      .|+... ...+.||++|+|            ++.+.+++..++.+.+..
T Consensus       163 ~Q~~~e-ek~~~aD~VI~N------------~g~~~~~l~~~~~~~~~~  198 (204)
T PRK14733        163 LQISDK-EREKIADFVIDN------------TELTDQELESKLITTINE  198 (204)
T ss_pred             hCCCHH-HHHHhCCEEEEC------------cCCCHHHHHHHHHHHHHH
Confidence            554321 112369999996            455899998888887764

>PLN02674 adenylate kinase

Probab=99.47  E-value=1.5e-12  Score=117.79  Aligned_cols=106  Identities=11%  Similarity=0.124  Sum_probs=75.1

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh------CCCChHHHHHhhchhHhHHHHHHHHHHHHcCC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA------GGESAAKAFRESDEKGYQQAETEVLKQLSSMG  164 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~------g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~  164 (278)
                      ...++|+|+|+|||||+|+|+.||+++|++++++++++++..      | ..+.+++. .|+..+.++...++.+.....
T Consensus        29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g-~~i~~~~~-~G~lvpd~iv~~lv~~~l~~~  106 (244)
T PLN02674         29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLG-IKAKEAMD-KGELVSDDLVVGIIDEAMKKP  106 (244)
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhh-HHHHHHHH-cCCccCHHHHHHHHHHHHhCc
Confidence            346889999999999999999999999999999999998763      3 33455554 577777777666665554322


Q ss_pred             CEEEEeCCceeec--hhH---HH----hhh-----CCcEEEEEcCHHHHHhh
Q 023749          165 RLVVCAGNGAVQS--SAN---LA----LLR-----HGISLWIDVPPGMVARM  202 (278)
Q Consensus       165 ~~VI~~g~g~v~~--~~~---~~----~L~-----~~~vV~L~a~~e~l~~R  202 (278)
                      .    ++.|++++  |++   .+    .+.     .+.+|+|++|.+++.+|
T Consensus       107 ~----~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~R  154 (244)
T PLN02674        107 S----CQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEER  154 (244)
T ss_pred             C----cCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence            1    12334443  222   22    121     46799999999999999

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=99.47  E-value=2.1e-13  Score=116.78  Aligned_cols=158  Identities=19%  Similarity=0.297  Sum_probs=94.3

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR  165 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~  165 (278)
                      -+|.+|||+|++||||||+|.+|.++|   |  ..++|.|.+......+..   +-.+.+.+..|.+ .++.+.++..+-
T Consensus        21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLg---Fs~edR~eniRRv-aevAkll~daG~   96 (197)
T COG0529          21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLG---FSREDRIENIRRV-AEVAKLLADAGL   96 (197)
T ss_pred             CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCC---CChHHHHHHHHHH-HHHHHHHHHCCe
Confidence            467899999999999999999999988   4  446899988765542111   1122233444432 133344444443


Q ss_pred             EEEEeCCceeechhHHH----hhhC--CcEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc---cCcEEEec
Q 023749          166 LVVCAGNGAVQSSANLA----LLRH--GISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA---TADVTVSL  236 (278)
Q Consensus       166 ~VI~~g~g~v~~~~~~~----~L~~--~~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~---~AD~vId~  236 (278)
                      .||.+-  +....+.++    .+..  -+-||++||.++|.+|+-+|........++.. |.-.+..|+   ++|+++| 
T Consensus        97 iviva~--ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~-fTGid~pYE~P~~Pel~l~-  172 (197)
T COG0529          97 IVIVAF--ISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKN-FTGIDSPYEAPENPELHLD-  172 (197)
T ss_pred             EEEEEe--eCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCC-CcCCCCCCCCCCCCeeEec-
Confidence            344321  111122232    3332  35799999999999994333221000001111 122234454   5788887 


Q ss_pred             CcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          237 QKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       237 ~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                                 |+..|+|+.++.|++++...
T Consensus       173 -----------t~~~~vee~v~~i~~~l~~~  192 (197)
T COG0529         173 -----------TDRNSVEECVEQILDLLKER  192 (197)
T ss_pred             -----------cccCCHHHHHHHHHHHHHhc
Confidence                       78899999999999999743

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.46  E-value=6.2e-13  Score=115.93  Aligned_cols=155  Identities=19%  Similarity=0.194  Sum_probs=90.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC--CCChHHHHHhhchhHhH---------------------
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKGYQ---------------------  150 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g--~~~i~ei~~~~ge~~fr---------------------  150 (278)
                      ..|.|+|++||||||+++.|++ +|++++|+|.+.++.+.  .....++...+|+..+.                     
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~   81 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR   81 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence            5799999999999999999998 99999999999888753  11123333333433221                     


Q ss_pred             -HHHH--------HHHHHHHcC--CCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcC-CCCCCChHHHHH
Q 023749          151 -QAET--------EVLKQLSSM--GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQLF  217 (278)
Q Consensus       151 -~~e~--------~vl~~l~~~--~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~l~  217 (278)
                       .++.        ++.+.+...  ...|+...  ..+.+.++.. ..+.+|++++|++++.+| ..| +.+.++....+.
T Consensus        82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~--pll~e~~~~~-~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~~~ri~  158 (194)
T PRK00081         82 KKLEAILHPLIREEILEQLQEAESSPYVVLDI--PLLFENGLEK-LVDRVLVVDAPPETQLERLMARDGLSEEEAEAIIA  158 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEe--hHhhcCCchh-hCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence             0010        011111111  12333211  1111222211 157999999999999999 444 333323333343


Q ss_pred             HHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          218 ALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       218 ~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                      .++.. ...-..||++|+|             +.+++++..++..++..
T Consensus       159 ~Q~~~-~~~~~~ad~vI~N-------------~g~~e~l~~qv~~i~~~  193 (194)
T PRK00081        159 SQMPR-EEKLARADDVIDN-------------NGDLEELRKQVERLLQE  193 (194)
T ss_pred             HhCCH-HHHHHhCCEEEEC-------------CCCHHHHHHHHHHHHHh
Confidence            33221 1111258999985             35899999999888753

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.45  E-value=1.6e-12  Score=117.07  Aligned_cols=154  Identities=14%  Similarity=0.173  Sum_probs=94.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhC---C--ceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEE
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALR---Y--YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC  169 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg---~--~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~  169 (278)
                      .|+|+|+|||||||+|+.|++.++   +  .+++.|.+.+.. .      .+...++..+++.+...+......+..||.
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~-~------~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~   73 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESF-P------VWKEKYEEFIRDSTLYLIKTALKNKYSVIV   73 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHh-H------HhhHHhHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            489999999999999999999873   3  456666554332 1      011223445555555556666555556666


Q ss_pred             eCCceeech--hHHHhhh-C---CcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhh---hcc--ccCcEEEecC
Q 023749          170 AGNGAVQSS--ANLALLR-H---GISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMR---DGY--ATADVTVSLQ  237 (278)
Q Consensus       170 ~g~g~v~~~--~~~~~L~-~---~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~---~~Y--~~AD~vId~~  237 (278)
                      .+.......  ..+...+ .   ..+|||++|.+++.+| ..|+.+..  .+.+.+++...+   ..|  +.++++||. 
T Consensus        74 D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~~--~~~i~~l~~r~e~p~~~~~wd~~~~~vd~-  150 (249)
T TIGR03574        74 DDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKIP--NEVIKDMYEKFDEPGTKYSWDLPDLTIDT-  150 (249)
T ss_pred             eccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCCC--HHHHHHHHHhhCCCCCCCCccCceEEecC-
Confidence            554322111  1111222 2   3689999999999999 55554321  234555544332   223  348888873 


Q ss_pred             cccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          238 KVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       238 ~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                                +...++++++++|.+.+...+
T Consensus       151 ----------~~~~~~~ei~~~i~~~~~~~~  171 (249)
T TIGR03574       151 ----------TKKIDYNEILEEILEISENKL  171 (249)
T ss_pred             ----------CCCCCHHHHHHHHHHHhhccC
Confidence                      234688999999999876544

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.45  E-value=3.6e-12  Score=112.45  Aligned_cols=105  Identities=17%  Similarity=0.185  Sum_probs=64.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCC-----ChHHHHHhhchhHhHHHHHHHHH-HHHc---CC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-----SAAKAFRESDEKGYQQAETEVLK-QLSS---MG  164 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~-----~i~ei~~~~ge~~fr~~e~~vl~-~l~~---~~  164 (278)
                      ++|+|+|+|||||||+|+.||+++|++++++++++++.....     .+.+++. .|.....+....++. .+..   ..
T Consensus         1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~-~g~~~p~~~~~~~i~~~l~~~~~~~   79 (215)
T PRK00279          1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMD-AGELVPDEIVIGLVKERLAQPDCKN   79 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhccCccC
Confidence            479999999999999999999999999999998887653311     1222222 232222233233333 2322   12


Q ss_pred             CEEEEeCCceeechhHHHhh----h-----CCcEEEEEcCHHHHHhh
Q 023749          165 RLVVCAGNGAVQSSANLALL----R-----HGISLWIDVPPGMVARM  202 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~~~~~L----~-----~~~vV~L~a~~e~l~~R  202 (278)
                      .+||+ |  +.........+    .     .+.+|+|++|.+++.+|
T Consensus        80 g~VlD-G--fPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~R  123 (215)
T PRK00279         80 GFLLD-G--FPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVER  123 (215)
T ss_pred             CEEEe-c--CCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHH
Confidence            34443 2  22222222222    2     35799999999999999

>PLN02200 adenylate kinase family protein

Probab=99.45  E-value=5.5e-12  Score=113.34  Aligned_cols=160  Identities=11%  Similarity=0.221  Sum_probs=92.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHHHHHHHH-HHHc--C
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVLK-QLSS--M  163 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~e~~vl~-~l~~--~  163 (278)
                      .+.+|+|+|+|||||||+|+.||+++|++++++++++++.....+     +.+... .|...-.++...++. .+..  .
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~-~G~~vp~e~~~~~l~~~l~~~~~  120 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIK-EGKIVPSEVTVKLIQKEMESSDN  120 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHH-cCCCCcHHHHHHHHHHHHhcCCC
Confidence            356899999999999999999999999999999998876442111     111111 122111222222222 2221  1


Q ss_pred             CCEEEEeCCceeechhHHHhh------hCCcEEEEEcCHHHHHhh-hcC--CCCCCChHHHHHH---HHHHh----hhcc
Q 023749          164 GRLVVCAGNGAVQSSANLALL------RHGISLWIDVPPGMVARM-DHS--GFPESEVLPQLFA---LYKEM----RDGY  227 (278)
Q Consensus       164 ~~~VI~~g~g~v~~~~~~~~L------~~~~vV~L~a~~e~l~~R-~~r--~rp~~~~~~~l~~---~~~er----~~~Y  227 (278)
                      ...|++ |  ......+...+      ..+.+|||++|++++.+| ..|  +|..+. .+.+.+   .|.+.    ...|
T Consensus       121 ~~~ILD-G--~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~-~e~~~~Rl~~y~~~~~pv~~~y  196 (234)
T PLN02200        121 NKFLID-G--FPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDN-IDTIKKRLKVFNALNLPVIDYY  196 (234)
T ss_pred             CeEEec-C--CcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence            223332 3  23223332222      156899999999999999 544  344332 233322   22221    2234


Q ss_pred             ccC-c-EEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749          228 ATA-D-VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS  269 (278)
Q Consensus       228 ~~A-D-~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~  269 (278)
                      +.. . ++||             .+.+++++.+.|.+.+....-
T Consensus       197 ~~~~~~~~ID-------------a~~~~eeV~~~v~~~l~~~~~  227 (234)
T PLN02200        197 SKKGKLYTIN-------------AVGTVDEIFEQVRPIFAACEA  227 (234)
T ss_pred             HhcCCEEEEE-------------CCCCHHHHHHHHHHHHHHcCC
Confidence            322 2 3555             356999999999999986553

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.42  E-value=2.6e-12  Score=112.35  Aligned_cols=155  Identities=19%  Similarity=0.169  Sum_probs=87.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-CCh-HHHHHhhchhH-----------------h-----
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ESA-AKAFRESDEKG-----------------Y-----  149 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~~i-~ei~~~~ge~~-----------------f-----  149 (278)
                      +.|.|+|++||||||+++.|++.+|++++|+|.+.++.+.. ..+ .++...+|+..                 |     
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~   81 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE   81 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence            47999999999999999999998899999999998876531 111 12222222111                 1     


Q ss_pred             -HHHHH--------HHHHHHHcC--CCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcC-CCCCCChHHHH
Q 023749          150 -QQAET--------EVLKQLSSM--GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQL  216 (278)
Q Consensus       150 -r~~e~--------~vl~~l~~~--~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~l  216 (278)
                       ..+|.        .+.+.+...  ...|+..-  .++.+..+.. ..+.+||++||.+++.+| ..| +...++....+
T Consensus        82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~--pll~E~~~~~-~~D~ii~V~a~~e~r~~Rl~~R~g~s~e~~~~ri  158 (195)
T PRK14730         82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLVI--PLLFEAKLTD-LCSEIWVVDCSPEQQLQRLIKRDGLTEEEAEARI  158 (195)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe--HHhcCcchHh-CCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHH
Confidence             11111        011111111  22222210  1111222211 157899999999999999 444 44332222333


Q ss_pred             HHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749          217 FALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN  265 (278)
Q Consensus       217 ~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~  265 (278)
                      ..++.. ...-..||++|+|             +.+.+++..++.+++.
T Consensus       159 ~~Q~~~-~~k~~~aD~vI~N-------------~g~~e~l~~qv~~~l~  193 (195)
T PRK14730        159 NAQWPL-EEKVKLADVVLDN-------------SGDLEKLYQQVDQLLK  193 (195)
T ss_pred             HhCCCH-HHHHhhCCEEEEC-------------CCCHHHHHHHHHHHHh
Confidence            332211 1111259999985             4589999999887753

>PRK08356 hypothetical protein; Provisional

Probab=99.41  E-value=1.3e-11  Score=107.38  Aligned_cols=155  Identities=13%  Similarity=0.176  Sum_probs=89.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC--CCh----H---------HHHHhhchhHhHH---HH-
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ESA----A---------KAFRESDEKGYQQ---AE-  153 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~--~~i----~---------ei~~~~ge~~fr~---~e-  153 (278)
                      .+.|+|+|+|||||||+|+.|+ ++|+++++.++.+.+....  ...    .         +-+-+.|. .++.   .+ 
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~-~~~~~yG~~~   82 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGR-YLKEKYGEDI   82 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHH-HHHHhcCcHH
Confidence            4679999999999999999996 4899999987743221100  000    0         00001111 0110   01 


Q ss_pred             --HHHHHHHHcCCCEEEEeCCceeechhHHHhhh--CCcEEEEEcCHHHHHhh-hcCCCCC---CChHHHHHHHHHHhhh
Q 023749          154 --TEVLKQLSSMGRLVVCAGNGAVQSSANLALLR--HGISLWIDVPPGMVARM-DHSGFPE---SEVLPQLFALYKEMRD  225 (278)
Q Consensus       154 --~~vl~~l~~~~~~VI~~g~g~v~~~~~~~~L~--~~~vV~L~a~~e~l~~R-~~r~rp~---~~~~~~l~~~~~er~~  225 (278)
                        ..++..+..... ++..  |+ ....+++.|+  .+.+|||++|.+++.+| ..|+...   ....+.+.+++..+..
T Consensus        83 ~~~~~~~~~~~~~~-ivid--G~-r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~  158 (195)
T PRK08356         83 LIRLAVDKKRNCKN-IAID--GV-RSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEK  158 (195)
T ss_pred             HHHHHHHHhccCCe-EEEc--Cc-CCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence              122333322222 3333  33 4445555554  46899999999999999 5554321   1123445454443332


Q ss_pred             cc------ccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          226 GY------ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       226 ~Y------~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                      .|      +.||++|.|             +.+.++++.+|..++..
T Consensus       159 l~~~~~~~~~aD~vI~N-------------~~~~e~~~~~i~~~~~~  192 (195)
T PRK08356        159 LYHTTKLKDKADFVIVN-------------EGTLEELRKKVEEILRE  192 (195)
T ss_pred             hhhhhhHHHhCcEEEEC-------------CCCHHHHHHHHHHHHHH
Confidence            22      259999974             46999999999998864

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.41  E-value=1.3e-12  Score=112.20  Aligned_cols=155  Identities=17%  Similarity=0.205  Sum_probs=91.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCE
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL  166 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~  166 (278)
                      +|..|+|+|++||||||+++.|+..+   |  ..+++.|.+...+.++...   -.......++.+. .+...+...+..
T Consensus        17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~G~~   92 (184)
T TIGR00455        17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGF---SEEDRKENIRRIG-EVAKLFVRNGII   92 (184)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCC---CHHHHHHHHHHHH-HHHHHHHcCCCE
Confidence            57899999999999999999999987   3  5678888876554331110   0111223333322 122334444555


Q ss_pred             EEEeCCceeechhHHHhhh----C--CcEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc--cCcEEEecCc
Q 023749          167 VVCAGNGAVQSSANLALLR----H--GISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--TADVTVSLQK  238 (278)
Q Consensus       167 VI~~g~g~v~~~~~~~~L~----~--~~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~--~AD~vId~~~  238 (278)
                      ||.+..  ......++.++    .  -.+|||++|.+++.+|+.++.......+.+..+...+.++|.  .||++||   
T Consensus        93 VI~d~~--~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~l~~~~~~y~~p~~adl~Id---  167 (184)
T TIGR00455        93 VITSFI--SPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKGFTGIDSPYEAPENPEVVLD---  167 (184)
T ss_pred             EEEecC--CCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhcCCccCcccccCCCCCCCCCcEEEE---
Confidence            665431  12223333332    1  257999999999999932221100001112222334455453  5899998   


Q ss_pred             ccccccccCCCCCCHHHHHHHHHHHh
Q 023749          239 VASQLGYDDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       239 va~~~~~~Dts~~tpeeva~~I~~~i  264 (278)
                               |+..++++++++|++++
T Consensus       168 ---------t~~~~~~~~~~~i~~~l  184 (184)
T TIGR00455       168 ---------TDQNDREECVGQIIEKL  184 (184)
T ss_pred             ---------CCCCCHHHHHHHHHHhC
Confidence                     67899999999998764

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK08233 hypothetical protein; Provisional

Probab=99.40  E-value=5.3e-12  Score=107.18  Aligned_cols=158  Identities=16%  Similarity=0.142  Sum_probs=84.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC-CceecCchHHHHHhCCCChHHHHHhhch----hHhHHHHHHHHHHHHcCC--
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR-YYYFDSDSLVFEAAGGESAAKAFRESDE----KGYQQAETEVLKQLSSMG--  164 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg-~~~iD~D~li~~~~g~~~i~ei~~~~ge----~~fr~~e~~vl~~l~~~~--  164 (278)
                      +++.|+|.|++||||||+|+.|++.++ ...+..|.+...... ..+.+... .+.    .....+ ...+..+....  
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~~~~~   78 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCP-EDICKWID-KGANYSEWVLTPL-IKDIQELIAKSNV   78 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCc-hhhhhhhh-ccCChhhhhhHHH-HHHHHHHHcCCCc
Confidence            467899999999999999999999996 333333333211110 01111111 011    011111 11233333323  


Q ss_pred             CEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcCCC--C-CCChHHHHHHHHHHhhhccc--------cCcE
Q 023749          165 RLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGF--P-ESEVLPQLFALYKEMRDGYA--------TADV  232 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r~r--p-~~~~~~~l~~~~~er~~~Y~--------~AD~  232 (278)
                      +.||..+......+....  ..+++|||++|.+++.+| .+|..  . .++....+...+.++.+.|.        .+++
T Consensus        79 ~~vivd~~~~~~~~~~~~--~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~  156 (182)
T PRK08233         79 DYIIVDYPFAYLNSEMRQ--FIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADI  156 (182)
T ss_pred             eEEEEeeehhhccHHHHH--HcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCCeE
Confidence            445543211111111111  168999999999998887 33321  1 12233344444444444443        3677


Q ss_pred             EEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          233 TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       233 vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                      +|+             +..+++++.++|.+.+.+.
T Consensus       157 vId-------------~~~~~e~i~~~i~~~l~~~  178 (182)
T PRK08233        157 VLD-------------GALSVEEIINQIEEELYRR  178 (182)
T ss_pred             EEc-------------CCCCHHHHHHHHHHHHHhC
Confidence            776             3589999999999998753

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=1e-13  Score=138.61  Aligned_cols=81  Identities=26%  Similarity=0.201  Sum_probs=74.5

Q ss_pred             cccccccCCCcceecccccCCccccccccc-----------cCCcc----HHHHHHHHhhh------hccCCcEEEEEcc
Q 023749           43 LQYSIISRKPRITTRSIADDTTSNTVTKVA-----------AEDPS----FAVKKKAADIS------TELKGTSVFLVGM  101 (278)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~----~~~~~~~~~~~------~~~~~~~I~L~G~  101 (278)
                      ++.-+..+++|.+||||++|.|++|||+.+           .||+|    .+||+|+.||.      +..+|+.++|.||
T Consensus       367 L~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GP  446 (906)
T KOG2004|consen  367 LKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGP  446 (906)
T ss_pred             HhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCC
Confidence            455588899999999999999999999998           78887    79999999998      7778999999999


Q ss_pred             CCCcHHHHHHHHHHHhCCceec
Q 023749          102 NNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus       102 ~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      ||+|||++||.+|++||..|+.
T Consensus       447 PGVGKTSI~kSIA~ALnRkFfR  468 (906)
T KOG2004|consen  447 PGVGKTSIAKSIARALNRKFFR  468 (906)
T ss_pred             CCCCcccHHHHHHHHhCCceEE
Confidence            9999999999999999998875

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.39  E-value=3.8e-12  Score=108.57  Aligned_cols=156  Identities=18%  Similarity=0.150  Sum_probs=87.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCc----eecCchHHHHH-hC----CCChHHHHHhhchhHh----------HHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYY----YFDSDSLVFEA-AG----GESAAKAFRESDEKGY----------QQAE  153 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~----~iD~D~li~~~-~g----~~~i~ei~~~~ge~~f----------r~~e  153 (278)
                      |..|+|+|++||||||+++.|+..++..    ++..+.-.... .|    ..+..++....+...|          ...-
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP   80 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccCh
Confidence            4689999999999999999999987542    22110000000 00    0121222221111101          0001


Q ss_pred             HHHHHHHHcCCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccc--cC
Q 023749          154 TEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYA--TA  230 (278)
Q Consensus       154 ~~vl~~l~~~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~--~A  230 (278)
                       ..+......+..||.+|++... ...++.+....+|||++|.+++.+| ..|+++..   +.+...+ ++.+.|.  .+
T Consensus        81 -~~i~~~~~~g~~vv~~g~~~~~-~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~---~~~~~rl-~~~~~~~~~~~  154 (179)
T TIGR02322        81 -AEIDQWLEAGDVVVVNGSRAVL-PEARQRYPNLLVVNITASPDVLAQRLAARGRESR---EEIEERL-ARSARFAAAPA  154 (179)
T ss_pred             -HHHHHHHhcCCEEEEECCHHHH-HHHHHHCCCcEEEEEECCHHHHHHHHHHcCCCCH---HHHHHHH-HHHhhcccccC
Confidence             1123333345567777764422 2223333356899999999999999 66666532   3444444 3445554  47


Q ss_pred             cEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          231 DVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       231 D~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                      |+++.            .++.++++++.+|.+++.+
T Consensus       155 ~~~vi------------~~~~~~ee~~~~i~~~l~~  178 (179)
T TIGR02322       155 DVTTI------------DNSGSLEVAGETLLRLLRK  178 (179)
T ss_pred             CEEEE------------eCCCCHHHHHHHHHHHHcc
Confidence            77643            1357999999999998864

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR01351 adk adenylate kinases

Probab=99.39  E-value=2.2e-11  Score=107.06  Aligned_cols=104  Identities=13%  Similarity=0.157  Sum_probs=63.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHHHHHHH-HHHHc----CC
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVL-KQLSS----MG  164 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~e~~vl-~~l~~----~~  164 (278)
                      +|+|+|+|||||||+|+.||+++|++++++++++++.....+     +.++.. .|...-.++-..++ ..+..    ..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~-~g~~vp~~~~~~l~~~~i~~~~~~~~   79 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYME-KGELVPDEIVNQLVKERLTQNQDNEN   79 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCcccCC
Confidence            389999999999999999999999999999998876543111     122221 22211112212222 22322    12


Q ss_pred             CEEEEeCCceeechhHHHhh------hCCcEEEEEcCHHHHHhh
Q 023749          165 RLVVCAGNGAVQSSANLALL------RHGISLWIDVPPGMVARM  202 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~~~~~L------~~~~vV~L~a~~e~l~~R  202 (278)
                      .+|++ |  +.......+.|      ..+.+|||++|.+++.+|
T Consensus        80 ~~ilD-G--fPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~R  120 (210)
T TIGR01351        80 GFILD-G--FPRTLSQAEALDALLKEKIDAVIELDVPDEELVER  120 (210)
T ss_pred             cEEEe-C--CCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHH
Confidence            34443 2  22222222223      146899999999999999

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.38  E-value=5.6e-12  Score=110.62  Aligned_cols=156  Identities=15%  Similarity=0.189  Sum_probs=90.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC--CChHHHHHhhchh----------------HhHHHHH-
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ESAAKAFRESDEK----------------GYQQAET-  154 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~--~~i~ei~~~~ge~----------------~fr~~e~-  154 (278)
                      +.|.|+|.+||||||+++.|++ +|++++|+|.+..+.+..  ....++...+|+.                .|.+.+. 
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~   80 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT   80 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence            4699999999999999999987 899999999887665431  1122333333332                1211100 


Q ss_pred             HHHHHH-------------H---cC-CCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh--hcCCCCCCChHHH
Q 023749          155 EVLKQL-------------S---SM-GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM--DHSGFPESEVLPQ  215 (278)
Q Consensus       155 ~vl~~l-------------~---~~-~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R--~~r~rp~~~~~~~  215 (278)
                      +.++.+             .   .. ...++... . .+.+.++.. ..+.+||+++|.+++.+|  .+++++.++....
T Consensus        81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~-p-lL~e~g~~~-~~D~vi~V~a~~e~ri~Rl~~R~g~s~e~~~~r  157 (200)
T PRK14734         81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDM-P-LLVEKGLDR-KMDLVVVVDVDVEERVRRLVEKRGLDEDDARRR  157 (200)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEe-e-ceeEcCccc-cCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence            011111             0   11 11222211 1 111122110 157899999999999999  4446554444444


Q ss_pred             HHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          216 LFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       216 l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                      +..++.. +.....||++|+|             +.+++++.+++..++...
T Consensus       158 i~~Q~~~-~~k~~~ad~vI~N-------------~g~~e~l~~~v~~~~~~~  195 (200)
T PRK14734        158 IAAQIPD-DVRLKAADIVVDN-------------NGTREQLLAQVDGLIAEI  195 (200)
T ss_pred             HHhcCCH-HHHHHhCCEEEEC-------------cCCHHHHHHHHHHHHHHH
Confidence            4443322 1112369999995             468999999998887654

>PRK14527 adenylate kinase; Provisional

Probab=99.38  E-value=4.1e-11  Score=103.74  Aligned_cols=156  Identities=13%  Similarity=0.113  Sum_probs=87.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-CChHHHHHh---hchhHhHHHHHHHHHH-HHc--CC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ESAAKAFRE---SDEKGYQQAETEVLKQ-LSS--MG  164 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~~i~ei~~~---~ge~~fr~~e~~vl~~-l~~--~~  164 (278)
                      +++.|+++|+|||||||+|+.|++++|+.++++|+++.+.... .........   .|...-.+.-..++.+ +..  ..
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~~   84 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEPV   84 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCC
Confidence            5789999999999999999999999999999999988765431 111111111   1211111111222222 222  12


Q ss_pred             CEEEEeCCceeechhHHHhh----h-----CCcEEEEEcCHHHHHhh-hcC----CCCCCChHHHHHHHHHHh----hh-
Q 023749          165 RLVVCAGNGAVQSSANLALL----R-----HGISLWIDVPPGMVARM-DHS----GFPESEVLPQLFALYKEM----RD-  225 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~~~~~L----~-----~~~vV~L~a~~e~l~~R-~~r----~rp~~~~~~~l~~~~~er----~~-  225 (278)
                      ..|++   |+.......+.+    +     ...+|||++|.+++.+| ..|    +|+... .+.+.+.++++    .+ 
T Consensus        85 ~~VlD---Gfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~-~~~~~~R~~~y~~~~~~v  160 (191)
T PRK14527         85 RVIFD---GFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDN-EETVRRRQQVYREQTQPL  160 (191)
T ss_pred             cEEEc---CCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCC-HHHHHHHHHHHHHHhHHH
Confidence            34443   233222222211    1     34689999999999999 444    344322 23332222211    11 


Q ss_pred             --ccccCc--EEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749          226 --GYATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       226 --~Y~~AD--~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i  264 (278)
                        .|+.-.  .+||             ...+++++.++|...+
T Consensus       161 ~~~y~~~~~~~~id-------------~~~~~~~v~~~i~~~l  190 (191)
T PRK14527        161 VDYYEARGHLKRVD-------------GLGTPDEVYARILKAL  190 (191)
T ss_pred             HHHHHhcCCEEEEE-------------CCCCHHHHHHHHHHhh
Confidence              233211  3454             5689999999998775

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.38  E-value=1.1e-11  Score=101.47  Aligned_cols=98  Identities=18%  Similarity=0.271  Sum_probs=61.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCce
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA  174 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g~  174 (278)
                      .|+|+|++||||||+|+.||+++|+++++.|.+..+..+ .......   ....++....+.+.++....++|+. |...
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~-~~~~~~~---~~~~i~~~l~~~~~~~~~~~~~Vid-g~~~   75 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVG-KLASEVA---AIPEVRKALDERQRELAKKPGIVLE-GRDI   75 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHH-HHHHHhc---ccHhHHHHHHHHHHHHhhCCCEEEE-eeee
Confidence            489999999999999999999999999999965443322 0000000   0112222223344455555566664 2211


Q ss_pred             eechhHHHhhh-CCcEEEEEcCHHHHHhh
Q 023749          175 VQSSANLALLR-HGISLWIDVPPGMVARM  202 (278)
Q Consensus       175 v~~~~~~~~L~-~~~vV~L~a~~e~l~~R  202 (278)
                      -     +..+. .+++|||++|++.+.+|
T Consensus        76 ~-----~~~~~~~~~~i~l~~~~~~r~~R   99 (147)
T cd02020          76 G-----TVVFPDADLKIFLTASPEVRAKR   99 (147)
T ss_pred             e-----eEEcCCCCEEEEEECCHHHHHHH
Confidence            0     00122 57899999999999988

>PRK00023 cmk cytidylate kinase; Provisional

Probab=99.37  E-value=3.9e-11  Score=107.18  Aligned_cols=39  Identities=23%  Similarity=0.344  Sum_probs=35.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE  130 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~  130 (278)
                      ..++|.|.|++||||||+|+.||+++|++++|+|.+++.
T Consensus         3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~   41 (225)
T PRK00023          3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA   41 (225)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence            457899999999999999999999999999999997554

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=99.37  E-value=5.8e-12  Score=105.29  Aligned_cols=150  Identities=20%  Similarity=0.288  Sum_probs=96.2

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhH--hHHHHHHHHHHHH---cCCC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKG--YQQAETEVLKQLS---SMGR  165 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~--fr~~e~~vl~~l~---~~~~  165 (278)
                      -..++|+++|.||+||||+|..||+.+|+++++..+++++..       ++..+.+++  .---|..++..|.   ..+.
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~-------l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg   77 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENN-------LYEGYDEEYKCHILDEDKVLDELEPLMIEGG   77 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhc-------chhcccccccCccccHHHHHHHHHHHHhcCC
Confidence            346799999999999999999999999999999998887631       222222221  0001334444332   2355


Q ss_pred             EEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcCCCCCCC----hH-HHHHHHHHHhhhccccCcEEEecCcc
Q 023749          166 LVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPESE----VL-PQLFALYKEMRDGYATADVTVSLQKV  239 (278)
Q Consensus       166 ~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r~rp~~~----~~-~~l~~~~~er~~~Y~~AD~vId~~~v  239 (278)
                      +||+.. |+-+.+..|    .++||.|.+|.+++.+| ..|++....    .. +.+.-.+++-...|. +++|+..   
T Consensus        78 ~IVDyH-gCd~Fperw----fdlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~eea~eSy~-~~iV~eL---  148 (176)
T KOG3347|consen   78 NIVDYH-GCDFFPERW----FDLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLEEARESYS-PKIVVEL---  148 (176)
T ss_pred             cEEeec-ccCccchhh----eeEEEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHHHHHHHHcC-Ccceeec---
Confidence            566532 222223322    57899999999999999 888865322    22 223335566566665 6788874   


Q ss_pred             cccccccCCCCCCHHHHHHHHHHHhh
Q 023749          240 ASQLGYDDLDAVTTEDMTLEVKWLYN  265 (278)
Q Consensus       240 a~~~~~~Dts~~tpeeva~~I~~~i~  265 (278)
                               ...++|++...|-+.++
T Consensus       149 ---------~s~~~Eem~~ni~ri~~  165 (176)
T KOG3347|consen  149 ---------QSETKEEMESNISRILN  165 (176)
T ss_pred             ---------CcCCHHHHHHHHHHHHH
Confidence                     45677888877655543

>TIGR00017 cmk cytidylate kinase

Probab=99.36  E-value=3.8e-11  Score=106.80  Aligned_cols=38  Identities=26%  Similarity=0.363  Sum_probs=34.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE  130 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~  130 (278)
                      .+.|.|.|++||||||+++.|++++|+++++++.+.+.
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~   39 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRA   39 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHH
Confidence            36899999999999999999999999999999987644

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK14528 adenylate kinase; Provisional

Probab=99.36  E-value=6.6e-12  Score=108.76  Aligned_cols=152  Identities=14%  Similarity=0.177  Sum_probs=85.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-CC----hHHHHHhhchhHhHHHHHHHH-HHHHc---CC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES----AAKAFRESDEKGYQQAETEVL-KQLSS---MG  164 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~~----i~ei~~~~ge~~fr~~e~~vl-~~l~~---~~  164 (278)
                      ++|+|+|+|||||||+|+.|++.+|++++++|+++++.... ..    +..++ ..|+..-.+.-..++ ..+..   ..
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~-~~g~lvp~~~~~~~~~~~l~~~~~~~   80 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYM-DAGDLVPDSVVIGIIKDRIREADCKN   80 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHH-hCCCccCHHHHHHHHHHHHhCcCccC
Confidence            57999999999999999999999999999999998774421 11    11111 122211111111122 22221   12


Q ss_pred             CEEEEeCCceeechhHHH----hh-----hCCcEEEEEcCHHHHHhh-hcC----CCCCCChHHHHHHHH----HHhhh-
Q 023749          165 RLVVCAGNGAVQSSANLA----LL-----RHGISLWIDVPPGMVARM-DHS----GFPESEVLPQLFALY----KEMRD-  225 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~~~~----~L-----~~~~vV~L~a~~e~l~~R-~~r----~rp~~~~~~~l~~~~----~er~~-  225 (278)
                      .+||+ |  +.......+    .+     ..+++|||++|.+++.+| ..|    +|+.+. .+.+.+.+    +...+ 
T Consensus        81 g~viD-G--~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~-~e~i~~Rl~~y~~~~~pv  156 (186)
T PRK14528         81 GFLLD-G--FPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDN-EATIKNRLDNYNKKTLPL  156 (186)
T ss_pred             cEEEe-C--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCC-HHHHHHHHHHHHHHhHHH
Confidence            24443 2  222222111    12     146899999999999999 444    555432 33333322    22222 


Q ss_pred             --ccccCc--EEEecCcccccccccCCCCCCHHHHHHHHHHH
Q 023749          226 --GYATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWL  263 (278)
Q Consensus       226 --~Y~~AD--~vId~~~va~~~~~~Dts~~tpeeva~~I~~~  263 (278)
                        .|+.-.  .+||             ...+++++...|...
T Consensus       157 ~~~y~~~~~~~~i~-------------~~~~~~~v~~~~~~~  185 (186)
T PRK14528        157 LDFYAAQKKLSQVN-------------GVGSLEEVTSLIQKE  185 (186)
T ss_pred             HHHHHhCCCEEEEE-------------CCCCHHHHHHHHHHh
Confidence              233222  2444             567999999988765

>PLN02422 dephospho-CoA kinase

Probab=99.35  E-value=1.6e-11  Score=110.24  Aligned_cols=157  Identities=11%  Similarity=0.035  Sum_probs=90.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-C-ChHHHHHhhchhHhH---------------------
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-E-SAAKAFRESDEKGYQ---------------------  150 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~-~i~ei~~~~ge~~fr---------------------  150 (278)
                      +.|.|+|.+||||||+++.|+ ++|++++|+|.+.++.+.. . ...++...+|++.+.                     
T Consensus         2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~   80 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR   80 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            369999999999999999998 5899999999998776531 0 122333344433221                     


Q ss_pred             -HHHH--------HHHHHHH----cCCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcC-CCCCCChHHH
Q 023749          151 -QAET--------EVLKQLS----SMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQ  215 (278)
Q Consensus       151 -~~e~--------~vl~~l~----~~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~  215 (278)
                       .+|.        ++...+.    .....++...  ..+.+.++.. ..+.+|+++||++++.+| ..| +...++....
T Consensus        81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~ei--pLL~E~~~~~-~~D~vI~V~a~~e~ri~RL~~R~g~s~eea~~R  157 (232)
T PLN02422         81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDI--PLLFETKMDK-WTKPVVVVWVDPETQLERLMARDGLSEEQARNR  157 (232)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEe--hhhhhcchhh-hCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence             1111        0111110    1112222211  1112222211 157899999999999999 544 4433333333


Q ss_pred             HHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          216 LFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       216 l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                      +..++.. ...-+.||++|+|             +.+.|++..++.++++...
T Consensus       158 i~~Q~~~-eek~~~AD~VI~N-------------~gs~e~L~~qv~~ll~~l~  196 (232)
T PLN02422        158 INAQMPL-DWKRSKADIVIDN-------------SGSLEDLKQQFQKVLEKIR  196 (232)
T ss_pred             HHHcCCh-hHHHhhCCEEEEC-------------CCCHHHHHHHHHHHHHHHh
Confidence            4333211 0112269999995             4599999999988876543

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=99.35  E-value=9.7e-12  Score=119.74  Aligned_cols=158  Identities=20%  Similarity=0.214  Sum_probs=94.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC--CChHHHHHhhchh----------------HhHHHHH-
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ESAAKAFRESDEK----------------GYQQAET-  154 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~--~~i~ei~~~~ge~----------------~fr~~e~-  154 (278)
                      +.|.|+|++||||||+++.|++ +|++++|+|.+.++.+..  ..+.++++.+|+.                .|.+.+. 
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~   80 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR   80 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            3699999999999999999987 899999999999886641  1234555555554                3322211 


Q ss_pred             HHHHHH-------------Hc-CCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh--hcCCCCCCChHHHHHH
Q 023749          155 EVLKQL-------------SS-MGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM--DHSGFPESEVLPQLFA  218 (278)
Q Consensus       155 ~vl~~l-------------~~-~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R--~~r~rp~~~~~~~l~~  218 (278)
                      ..++.+             .. .+..++..+.. .+.+..+.. ..+.+|||++|.+++.+|  .+|+...++....+..
T Consensus        81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eip-LL~E~~~~~-~~D~iI~V~ap~e~ri~Rl~~rRg~s~~~a~~ri~~  158 (395)
T PRK03333         81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIP-LLVESGMAP-LFHLVVVVDADVEVRVRRLVEQRGMAEADARARIAA  158 (395)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEee-eeecCCchh-hCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHh
Confidence            111111             11 11122222111 222222211 157899999999999999  4455543333333333


Q ss_pred             HHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          219 LYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       219 ~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                      ++.. +..-..||++|+|             +.+++++..++.++++...
T Consensus       159 Q~~~-e~k~~~AD~vIdN-------------~~s~e~l~~~v~~~l~~~~  194 (395)
T PRK03333        159 QASD-EQRRAVADVWLDN-------------SGTPDELVEAVRALWADRL  194 (395)
T ss_pred             cCCh-HHHHHhCCEEEEC-------------CCCHHHHHHHHHHHHHHHH
Confidence            2111 1112369999985             4689999999888775543

>PLN02459 probable adenylate kinase

Probab=99.34  E-value=4.3e-11  Score=109.10  Aligned_cols=105  Identities=10%  Similarity=0.091  Sum_probs=64.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-----CChHHHHHhhchhHhHHHHHHHHH-HHHcC----
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ESAAKAFRESDEKGYQQAETEVLK-QLSSM----  163 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-----~~i~ei~~~~ge~~fr~~e~~vl~-~l~~~----  163 (278)
                      ++|+|+|+|||||||+|+.||+.+|+.++++++++++....     ..+.+++. .|.-.-.++-..++. ++...    
T Consensus        30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~-~G~lVPdeiv~~ll~~~l~~~~~~~  108 (261)
T PLN02459         30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVN-QGKLVPDEIIFSLLSKRLEAGEEEG  108 (261)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHH-cCCccCHHHHHHHHHHHHhcccccC
Confidence            67999999999999999999999999999999998765321     11222222 233222222222222 22211    


Q ss_pred             -CCEEEEeCCceeechhHHHhhh----CCcEEEEEcCHHHHHhh
Q 023749          164 -GRLVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM  202 (278)
Q Consensus       164 -~~~VI~~g~g~v~~~~~~~~L~----~~~vV~L~a~~e~l~~R  202 (278)
                       ..+|++   |++-+..+...|.    .+.+|+|++|.+++.+|
T Consensus       109 ~~g~iLD---GFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~R  149 (261)
T PLN02459        109 ESGFILD---GFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEK  149 (261)
T ss_pred             CceEEEe---CCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence             122221   2232222223332    46899999999999999

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.34  E-value=1.2e-11  Score=102.54  Aligned_cols=123  Identities=20%  Similarity=0.182  Sum_probs=75.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH-----HhCCCChHHHHHhhchhHhHHHHHHHHHHHH-cCCCEEE
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE-----AAGGESAAKAFRESDEKGYQQAETEVLKQLS-SMGRLVV  168 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~-----~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~-~~~~~VI  168 (278)
                      .|+|+|+|||||||+|+.|++.++++++|.|.+...     ...+....   ....+.+++.+.......+. ....+|+
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~vVi   77 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLN---DEDRWPWLQALTDALLAKLASAGEGVVV   77 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCC---ccchhhHHHHHHHHHHHHHHhCCCCEEE
Confidence            478999999999999999999999999999998763     11111111   11134445555444444443 4455666


Q ss_pred             EeCCceeechhHHHhhh------CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhh
Q 023749          169 CAGNGAVQSSANLALLR------HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMR  224 (278)
Q Consensus       169 ~~g~g~v~~~~~~~~L~------~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~  224 (278)
                      +++.   .....+..++      .-.+|||++|.+++.+| ..|...... .+.+..+++..+
T Consensus        78 d~~~---~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~-~~~~~~~~~~~~  136 (150)
T cd02021          78 ACSA---LKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARKGHFMP-ADLLDSQFETLE  136 (150)
T ss_pred             Eecc---ccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcccCCCC-HHHHHHHHHHhc
Confidence            6442   2233333333      12589999999999999 555321111 345666655443

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>TIGR00152 dephospho-CoA kinase

Probab=99.34  E-value=2.1e-11  Score=105.35  Aligned_cols=146  Identities=18%  Similarity=0.166  Sum_probs=84.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC--hHHHHHhhchhH----------------hHHH----
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES--AAKAFRESDEKG----------------YQQA----  152 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~--i~ei~~~~ge~~----------------fr~~----  152 (278)
                      .|+|+|.+||||||+++.|++..|++++|+|.+.++.+....  ..++...+|...                |.+.    
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~   80 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK   80 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence            489999999999999999999777999999999877664111  122333333221                1111    


Q ss_pred             --H--------HHHHHHHHc---CCCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcC-CCCCCChHHHH
Q 023749          153 --E--------TEVLKQLSS---MGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPESEVLPQL  216 (278)
Q Consensus       153 --e--------~~vl~~l~~---~~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~l  216 (278)
                        |        .++.+.+..   .+..|+... . .+.+..  ... .+.+||+++|.+++.+| ..| +.+.++....+
T Consensus        81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~-p-ll~e~~--~~~~~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~~r~  156 (188)
T TIGR00152        81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDV-P-LLFENK--LRSLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQKRL  156 (188)
T ss_pred             HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEc-h-HhhhCC--cHHhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHH
Confidence              1        111111111   112333211 0 111111  112 67899999999999999 544 44433333333


Q ss_pred             HHHHHHhhhccc---cCcEEEecCcccccccccCCCCCCHHHHHHHHH
Q 023749          217 FALYKEMRDGYA---TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVK  261 (278)
Q Consensus       217 ~~~~~er~~~Y~---~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~  261 (278)
                      ..+    .+.+.   .||++|+|             +.++|++..++.
T Consensus       157 ~~q----~~~~~~~~~ad~vI~N-------------~~~~e~l~~~~~  187 (188)
T TIGR00152       157 ASQ----MDIEERLARADDVIDN-------------SATLADLVKQLE  187 (188)
T ss_pred             Hhc----CCHHHHHHhCCEEEEC-------------CCCHHHHHHHHh
Confidence            332    22222   59999985             469999988764

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK04040 adenylate kinase; Provisional

Probab=99.33  E-value=4.5e-11  Score=104.02  Aligned_cols=159  Identities=15%  Similarity=0.179  Sum_probs=89.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh--CCceecCchHHHHHhC--CC-ChHHHHHhhchh---HhHHHHHHHHHHHHcCC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEAAG--GE-SAAKAFRESDEK---GYQQAETEVLKQLSSMG  164 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L--g~~~iD~D~li~~~~g--~~-~i~ei~~~~ge~---~fr~~e~~vl~~l~~~~  164 (278)
                      ++.|+|+|+|||||||+++.|++++  ++.+++.++++.+...  +. .-.+-+......   .++......+.++....
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~~~   81 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAGEG   81 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhcCC
Confidence            5789999999999999999999999  8999999998755331  01 001111111111   11222222233333333


Q ss_pred             CEEEEeCCceeechh---------HHHhhhCCcEEEEEcCHHHHHhh-h---cCCCCCCCh--HHHHHHHHHHhhhccc-
Q 023749          165 RLVVCAGNGAVQSSA---------NLALLRHGISLWIDVPPGMVARM-D---HSGFPESEV--LPQLFALYKEMRDGYA-  228 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~---------~~~~L~~~~vV~L~a~~e~l~~R-~---~r~rp~~~~--~~~l~~~~~er~~~Y~-  228 (278)
                      ..|++ |..++..+.         ....+..+.+|+|.+|++++.+| .   .|+|+.+..  .+.....-......|. 
T Consensus        82 ~~~~~-~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~~a~  160 (188)
T PRK04040         82 PVIVD-THATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMAYAV  160 (188)
T ss_pred             CEEEe-eeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34554 332222211         11223367899999999998888 2   466664331  1222121111112222 


Q ss_pred             ---cCcEEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749          229 ---TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       229 ---~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i  264 (278)
                         ..+++|.|+           +++ +|+.++++.+++
T Consensus       161 ~~g~~~~iI~N~-----------d~~-~e~a~~~i~~ii  187 (188)
T PRK04040        161 LTGATVKIVENR-----------EGL-LEEAAEEIVEVL  187 (188)
T ss_pred             hcCCeEEEEECC-----------CCC-HHHHHHHHHHHh
Confidence               366777642           344 999999998876

>PRK14526 adenylate kinase; Provisional

Probab=99.33  E-value=7.5e-11  Score=104.49  Aligned_cols=105  Identities=10%  Similarity=0.169  Sum_probs=64.3

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-----CChHHHHHhhchhHhHHHHHHHHHH-HHc---CC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ESAAKAFRESDEKGYQQAETEVLKQ-LSS---MG  164 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-----~~i~ei~~~~ge~~fr~~e~~vl~~-l~~---~~  164 (278)
                      ++|+|+|+|||||||+++.||+.+|++++++++++++....     ..+.+++. .|.....+.-..++.+ +..   ..
T Consensus         1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~-~g~lvpd~~~~~lv~~~l~~~~~~~   79 (211)
T PRK14526          1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVE-NGQLVPDSITIKIVEDKINTIKNND   79 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHH-cCccCChHHHHHHHHHHHhcccccC
Confidence            46899999999999999999999999999999998764321     22334433 2332222222222322 221   12


Q ss_pred             CEEEEeCCceeechhHHHhhh----CCcEEEEEcCHHHHHhh
Q 023749          165 RLVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM  202 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~~~~~L~----~~~vV~L~a~~e~l~~R  202 (278)
                      .+|++   |+.-...+...|.    ...+|+|++|.+++.+|
T Consensus        80 g~ilD---GfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~R  118 (211)
T PRK14526         80 NFILD---GFPRNINQAKALDKFLPNIKIINFLIDEELLIKR  118 (211)
T ss_pred             cEEEE---CCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHH
Confidence            34442   2322222223332    23578899999999999

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=99.31  E-value=3.6e-11  Score=111.25  Aligned_cols=142  Identities=18%  Similarity=0.196  Sum_probs=85.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG  171 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g  171 (278)
                      ....|+|+|++||||||+++.|+ .+|+.++|.-.          + +++..     |.+   . +.+-.......+...
T Consensus         5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~~----------~-~L~~~-----l~~---~-~~~~~~~~~~av~iD   63 (288)
T PRK05416          5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDNLP----------P-SLLPK-----LVE---L-LAQSGGIRKVAVVID   63 (288)
T ss_pred             CceEEEEECCCCCcHHHHHHHHH-HcCCeEECCcC----------H-HHHHH-----HHH---H-HHhcCCCCCeEEEEc
Confidence            45689999999999999999996 57998886422          1 11111     110   0 000000111222111


Q ss_pred             C--ceee--chhHHHhhh-CC---cEEEEEcCHHHHHhh--h-cCCCCCCChHHHHHHHHHHh---hhccccCcEEEecC
Q 023749          172 N--GAVQ--SSANLALLR-HG---ISLWIDVPPGMVARM--D-HSGFPESEVLPQLFALYKEM---RDGYATADVTVSLQ  237 (278)
Q Consensus       172 ~--g~v~--~~~~~~~L~-~~---~vV~L~a~~e~l~~R--~-~r~rp~~~~~~~l~~~~~er---~~~Y~~AD~vId~~  237 (278)
                      .  ....  ...++..|+ .+   .+|||+++.+++.+|  . ++.||........+.++++|   .+.|+.||++||  
T Consensus        64 ~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ADivID--  141 (288)
T PRK05416         64 VRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRERADLVID--  141 (288)
T ss_pred             cCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHhCCEEEE--
Confidence            1  1011  123444554 34   579999999999999  3 34566322122333344555   455567999998  


Q ss_pred             cccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          238 KVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       238 ~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                                |+++|++|++++|.+.+..
T Consensus       142 ----------Ts~ls~~el~e~I~~~l~~  160 (288)
T PRK05416        142 ----------TSELSVHQLRERIRERFGG  160 (288)
T ss_pred             ----------CCCCCHHHHHHHHHHHHhc
Confidence                      7899999999999999865

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=99.30  E-value=5.3e-11  Score=107.71  Aligned_cols=159  Identities=14%  Similarity=0.043  Sum_probs=92.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC--hHHHHHhhchhH----------------hH-----
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES--AAKAFRESDEKG----------------YQ-----  150 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~--i~ei~~~~ge~~----------------fr-----  150 (278)
                      ..|.|+|.+||||||+++.|++.+|++++|+|.+.++.+....  ..++.+.+|...                |.     
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~   81 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR   81 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            3699999999999999999998899999999999887654111  112222222211                11     


Q ss_pred             -HHHH--------HHHHHHH-------------cCCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcC-C
Q 023749          151 -QAET--------EVLKQLS-------------SMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-G  206 (278)
Q Consensus       151 -~~e~--------~vl~~l~-------------~~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r-~  206 (278)
                       .+|.        ++.+.+.             .....|+...  ..+.+.++...-.|.+|++++|.+++.+| ..| +
T Consensus        82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~ev--PLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~g  159 (244)
T PTZ00451         82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDA--PTLFETKTFTYFVSASVVVSCSEERQIERLRKRNG  159 (244)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEe--chhhccCchhhcCCeEEEEECCHHHHHHHHHHcCC
Confidence             1110        1111111             0111222211  12223332111158999999999999999 444 5


Q ss_pred             CCCCChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          207 FPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       207 rp~~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                      .+.++....+..++...+ .-..||++|+|           .+..|++++..+|.+++..
T Consensus       160 ~s~eea~~Ri~~Q~~~~e-k~~~aD~VI~N-----------~~~g~~~~L~~~v~~~~~~  207 (244)
T PTZ00451        160 FSKEEALQRIGSQMPLEE-KRRLADYIIEN-----------DSADDLDELRGSVCDCVAW  207 (244)
T ss_pred             CCHHHHHHHHHhCCCHHH-HHHhCCEEEEC-----------CCCCCHHHHHHHHHHHHHH
Confidence            544444444544433211 11269999985           1226999999999987754

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.30  E-value=1.4e-11  Score=124.98  Aligned_cols=157  Identities=14%  Similarity=0.191  Sum_probs=98.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh-----CCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCE
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL  166 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L-----g~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~  166 (278)
                      ++..|+++|+|||||||+|+.|++.|     ++.++|.|.+.....++..   +-.+....+++.+- .+...+...+..
T Consensus       459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~---~~~~~r~~~~~~l~-~~a~~~~~~G~~  534 (632)
T PRK05506        459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLG---FSDADRVENIRRVA-EVARLMADAGLI  534 (632)
T ss_pred             CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCC---CCHHHHHHHHHHHH-HHHHHHHhCCCE
Confidence            58899999999999999999999997     3578999998764433111   11112233444331 112223333444


Q ss_pred             EEEeCCceeechhHHHhhh-----CC-cEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc--cCcEEEecCc
Q 023749          167 VVCAGNGAVQSSANLALLR-----HG-ISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--TADVTVSLQK  238 (278)
Q Consensus       167 VI~~g~g~v~~~~~~~~L~-----~~-~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~--~AD~vId~~~  238 (278)
                      ||.+. . ......++.++     .. .+|||++|.+++.+|+.|+.......+.+..++..|.+++.  .||++||   
T Consensus       535 Vivda-~-~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~~r~L~~~~~~~~l~~l~~~r~~y~~P~~a~~~Id---  609 (632)
T PRK05506        535 VLVSF-I-SPFREERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIKNFTGIDSPYEAPENPELRLD---  609 (632)
T ss_pred             EEEEC-C-CCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhCCcchhhhccccccccccccccCCCCCCCCeEEEe---
Confidence            44432 1 12223333322     23 68999999999999944443211112345555666666542  4888988   


Q ss_pred             ccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          239 VASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       239 va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                               +++.++++++++|++++..
T Consensus       610 ---------~~~~s~~e~v~~Ii~~l~~  628 (632)
T PRK05506        610 ---------TTGRSPEELAEQVLELLRR  628 (632)
T ss_pred             ---------CCCCCHHHHHHHHHHHHHH
Confidence                     5689999999999999864

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.30  E-value=1.1e-10  Score=99.09  Aligned_cols=147  Identities=14%  Similarity=0.118  Sum_probs=86.1

Q ss_pred             EccCCCcHHHHHHHHHHHhCCceecCchHHH-----HH-hCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCC
Q 023749           99 VGMNNAIKTHLGKFLADALRYYYFDSDSLVF-----EA-AGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN  172 (278)
Q Consensus        99 ~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~-----~~-~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~  172 (278)
                      +|++||||||+++.|++.+|..++|.|.+..     .. .| ....+   .....+...++..++......+..||.+. 
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~viv~s-   75 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASG-EPLND---DDRKPWLQALNDAAFAMQRTNKVSLIVCS-   75 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCC-CCCCh---hhHHHHHHHHHHHHHHHHHcCCceEEEEe-
Confidence            5999999999999999999999999997532     11 12 21111   11122333333333333333344444432 


Q ss_pred             ceeechhHHHhhh-C---CcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccc-cCc-EEEecCcccccccc
Q 023749          173 GAVQSSANLALLR-H---GISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYA-TAD-VTVSLQKVASQLGY  245 (278)
Q Consensus       173 g~v~~~~~~~~L~-~---~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~-~AD-~vId~~~va~~~~~  245 (278)
                       + .....++.++ .   -..|||++|.+++.+| ..|.... ...+.+..++...++.-. ..+ ++||          
T Consensus        76 -~-~~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~-a~~~vl~~Q~~~~ep~~~~e~~~~~id----------  142 (163)
T PRK11545         76 -A-LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHF-FKTQMLVTQFETLQEPGADETDVLVVD----------  142 (163)
T ss_pred             -c-chHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhccCCC-CCHHHHHHHHHHcCCCCCCCCCEEEEe----------
Confidence             1 1233344444 2   2689999999999999 5443222 234566666655554322 122 3444          


Q ss_pred             cCCCCCCHHHHHHHHHHHhhh
Q 023749          246 DDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       246 ~Dts~~tpeeva~~I~~~i~~  266 (278)
                        ++ .+++++++++...+.+
T Consensus       143 --~~-~~~~~~~~~~~~~~~~  160 (163)
T PRK11545        143 --ID-QPLEGVVASTIEVIKK  160 (163)
T ss_pred             --CC-CCHHHHHHHHHHHHHH
Confidence              44 5899999999998854

>PTZ00088 adenylate kinase 1; Provisional

Probab=99.29  E-value=1.3e-10  Score=104.21  Aligned_cols=107  Identities=9%  Similarity=0.112  Sum_probs=64.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-CC----hHHHHHhhch----hHhHHHHHHHHHHHH-
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES----AAKAFRESDE----KGYQQAETEVLKQLS-  161 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~~----i~ei~~~~ge----~~fr~~e~~vl~~l~-  161 (278)
                      .+++|+|+|+|||||||+|+.||+++|++++++|+++++.... ..    +.++... |.    +....+-...+.++. 
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~-G~lvpd~iv~~lv~~~l~~~~~   83 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTS-GNLVPDNLVIAIVKDEIAKVTD   83 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHHhhcc
Confidence            4577999999999999999999999999999999999875431 12    2222221 31    111111111222211 


Q ss_pred             c-CCCEEEEeCCceeechhHHHhhh----CCcEEEEEcCHHHHHhh
Q 023749          162 S-MGRLVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM  202 (278)
Q Consensus       162 ~-~~~~VI~~g~g~v~~~~~~~~L~----~~~vV~L~a~~e~l~~R  202 (278)
                      . ...+|++ |  ++-.......|.    .+++|+|++|.+++.+|
T Consensus        84 ~~~~g~iLD-G--fPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~R  126 (229)
T PTZ00088         84 DCFKGFILD-G--FPRNLKQCKELGKITNIDLFVNIYLPRNILIKK  126 (229)
T ss_pred             ccCceEEEe-c--CCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHH
Confidence            1 1223332 2  222222222232    56899999999999998

>PRK14529 adenylate kinase; Provisional

Probab=99.27  E-value=1.9e-10  Score=102.85  Aligned_cols=105  Identities=13%  Similarity=0.179  Sum_probs=65.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-C----ChHHHHHhhchhHhHHHHHHHHHH-HHc--CCC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-E----SAAKAFRESDEKGYQQAETEVLKQ-LSS--MGR  165 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~----~i~ei~~~~ge~~fr~~e~~vl~~-l~~--~~~  165 (278)
                      ++|+|+|+|||||||+|+.|++.+|++++++.+++++.... .    .+.++. ..|.....++-..++.+ +..  ...
T Consensus         1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i-~~G~lvpdei~~~lv~~~l~~~~~~g   79 (223)
T PRK14529          1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYI-DRGDLVPDDITIPMILETLKQDGKNG   79 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHH-hccCcchHHHHHHHHHHHHhccCCCc
Confidence            47999999999999999999999999999998888765421 1    122222 22433333333333333 222  122


Q ss_pred             EEEEeCCceeechhHHHh----hh-----CCcEEEEEcCHHHHHhh
Q 023749          166 LVVCAGNGAVQSSANLAL----LR-----HGISLWIDVPPGMVARM  202 (278)
Q Consensus       166 ~VI~~g~g~v~~~~~~~~----L~-----~~~vV~L~a~~e~l~~R  202 (278)
                      +|++   |++-...+.+.    +.     .+.+|+|++|.+++.+|
T Consensus        80 ~iLD---GfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~R  122 (223)
T PRK14529         80 WLLD---GFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNR  122 (223)
T ss_pred             EEEe---CCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence            3332   23222222221    21     46899999999999999

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=99.27  E-value=7.4e-11  Score=120.42  Aligned_cols=162  Identities=17%  Similarity=0.190  Sum_probs=92.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh------CCCChH---HHHH---hh------------chh-
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA------GGESAA---KAFR---ES------------DEK-  147 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~------g~~~i~---ei~~---~~------------ge~-  147 (278)
                      .+.|.+.||+||||||+|+.||++||++|+|++.+++...      + .++.   .+..   ..            +++ 
T Consensus       442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (661)
T PRK11860        442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAG-VALDDEAAIAALARGLPVRFEGDRIWLGGEDV  520 (661)
T ss_pred             cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcC-cCCCCHHHHHHHHhcCCeeecCCeEEECCeEc
Confidence            4589999999999999999999999999999999887641      1 1111   1110   00            000 


Q ss_pred             -----------------HhHHHHHHH---HHHHHcCCCEEEEeCC--ceeechhHHHhhhCCcEEEEEcCHHHHHhh--h
Q 023749          148 -----------------GYQQAETEV---LKQLSSMGRLVVCAGN--GAVQSSANLALLRHGISLWIDVPPGMVARM--D  203 (278)
Q Consensus       148 -----------------~fr~~e~~v---l~~l~~~~~~VI~~g~--g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R--~  203 (278)
                                       .+..+...+   ..++....+ ||..|.  |.++.++      +++-|||+++++++++|  +
T Consensus       521 ~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~~~~-~v~eGRdigtvv~p~------a~~kifl~a~~~~Ra~Rr~~  593 (661)
T PRK11860        521 TDAIRTEAAGMGASRVSALPAVRAALLALQRSFRRLPG-LVADGRDMGTVIFPD------AALKVFLTASAEARAERRYK  593 (661)
T ss_pred             hhhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhhCCC-EEEECCCCccEECCC------CCeEEEEECChhHHHHHHHH
Confidence                             001111111   112222233 333342  2232221      56899999999999998  2


Q ss_pred             ---cCCCCCCChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          204 ---HSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       204 ---~r~rp~~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                         +++.. .+ .+.+.+...+|+..-.  ...+++-+.|+..-++||+.+|+||++++|++++++
T Consensus       594 ~~~~~~~~-~~-~~~~~~~~~~Rd~~d~--~R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~~  655 (661)
T PRK11860        594 QLISKGIS-AN-IADLLADLEARDARDT--QRSVAPLKPAQDALLLDNSDLTIEQAVAQVLDWWQE  655 (661)
T ss_pred             HHHhCCCC-CC-HHHHHHHHHHHhHHhh--cCCCCCCccCCCEEEEECCCCCHHHHHHHHHHHHHh
Confidence               23332 12 3344444445442111  111112222333445679999999999999999975

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=99.27  E-value=1.5e-10  Score=101.98  Aligned_cols=156  Identities=13%  Similarity=0.131  Sum_probs=89.2

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC---hHHHHHhhchhH--------------------h
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES---AAKAFRESDEKG--------------------Y  149 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~---i~ei~~~~ge~~--------------------f  149 (278)
                      ...|.|+|.+||||||+++.|++ +|++++|+|.+..+.+. ..   ...+...+|...                    |
T Consensus         5 ~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~-~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf   82 (208)
T PRK14731          5 PFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQV-TDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF   82 (208)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcC-CcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence            35789999999999999999986 89999999988776543 11   011111111111                    1


Q ss_pred             H------HHHH--------HH---HHHHHcCC-CEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcCCCCC-
Q 023749          150 Q------QAET--------EV---LKQLSSMG-RLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPE-  209 (278)
Q Consensus       150 r------~~e~--------~v---l~~l~~~~-~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r~rp~-  209 (278)
                      .      .++.        .+   +......+ ..|+. +.. .+.+..+.. ..+.+|++++|.+++.+| .+|++.. 
T Consensus        83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~-e~p-LL~e~~~~~-~~d~ii~V~a~~e~~~~Rl~~R~~~s~  159 (208)
T PRK14731         83 SDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVK-EAA-ILFESGGDA-GLDFIVVVAADTELRLERAVQRGMGSR  159 (208)
T ss_pred             CCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEE-Eee-eeeecCchh-cCCeEEEEECCHHHHHHHHHHcCCCCH
Confidence            1      0010        00   11111111 33432 222 222332211 157899999999999999 6665432 


Q ss_pred             CChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          210 SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       210 ~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                      ++....+..++..... .+.+|++|+|             +.++|++..+|.+++...
T Consensus       160 e~~~~Ri~~q~~~~~~-~~~ad~vI~N-------------~g~~e~l~~~i~~~~~~~  203 (208)
T PRK14731        160 EEIRRRIAAQWPQEKL-IERADYVIYN-------------NGTLDELKAQTEQLYQVL  203 (208)
T ss_pred             HHHHHHHHHcCChHHH-HHhCCEEEEC-------------CCCHHHHHHHHHHHHHHH
Confidence            2222333333222111 1358999985             468999999998887653

>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=99.27  E-value=3.4e-11  Score=103.72  Aligned_cols=161  Identities=13%  Similarity=0.133  Sum_probs=95.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC------CChHHHHHhhchhHhHHHHHHHHHH-HHcC-
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG------ESAAKAFRESDEKGYQQAETEVLKQ-LSSM-  163 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~------~~i~ei~~~~ge~~fr~~e~~vl~~-l~~~-  163 (278)
                      +.++||+.|.|||||-|++..+++++||.|+++++++++....      .-+.++.+ .|.-...++-..+|+. +.+. 
T Consensus         7 ~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~-~G~iVP~ei~~~LL~~am~~~~   85 (195)
T KOG3079|consen    7 KPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIK-NGDLVPVEITLSLLEEAMRSSG   85 (195)
T ss_pred             CCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHH-cCCcCcHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999999999998876541      11222222 2332222322233322 2221 


Q ss_pred             -CCEEEEeCCceeechhHHHhhh------CCcEEEEEcCHHHHHhh-hcCC----CCCCChHHHHHHH----HHHhhh--
Q 023749          164 -GRLVVCAGNGAVQSSANLALLR------HGISLWIDVPPGMVARM-DHSG----FPESEVLPQLFAL----YKEMRD--  225 (278)
Q Consensus       164 -~~~VI~~g~g~v~~~~~~~~L~------~~~vV~L~a~~e~l~~R-~~r~----rp~~~~~~~l~~~----~~er~~--  225 (278)
                       .+..+..  |++-..+++..+.      ..+++|++|+.|++.+| ..|+    |...+ .+.+++.    +....|  
T Consensus        86 ~~~~fLID--GyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn-~esikkR~et~~~~t~Pvi  162 (195)
T KOG3079|consen   86 DSNGFLID--GYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDN-EESIKKRLETYNKSTLPVI  162 (195)
T ss_pred             CCCeEEec--CCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCc-hHHHHHHHHHHHHcchHHH
Confidence             1222222  4444445544332      36999999999999999 4333    33322 3334332    222222  


Q ss_pred             -ccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          226 -GYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       226 -~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                       +|+..+          ++..+| .+.+++++..++...+...
T Consensus       163 ~~~e~kg----------~l~~i~-a~~~~d~Vf~~v~~~id~~  194 (195)
T KOG3079|consen  163 EYYEKKG----------KLLKIN-AERSVDDVFEEVVTAIDAA  194 (195)
T ss_pred             HHHHccC----------cEEEec-CCCCHHHHHHHHHHHhhcc
Confidence             222222          222333 5689999999999888653

>PRK08118 topology modulation protein; Reviewed

Probab=99.27  E-value=2.2e-11  Score=103.95  Aligned_cols=92  Identities=17%  Similarity=0.287  Sum_probs=63.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g  173 (278)
                      +.|+|+|++||||||+|+.|++.+|+++++.|.+++.. |+....       .+.+    ..+++++....++|+. |..
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~-~w~~~~-------~~~~----~~~~~~~~~~~~wVid-G~~   68 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP-NWEGVP-------KEEQ----ITVQNELVKEDEWIID-GNY   68 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc-CCcCCC-------HHHH----HHHHHHHhcCCCEEEe-CCc
Confidence            57999999999999999999999999999999987642 211111       1111    1234455555666664 321


Q ss_pred             eeechhHHH-hhh-CCcEEEEEcCHHHHHhh
Q 023749          174 AVQSSANLA-LLR-HGISLWIDVPPGMVARM  202 (278)
Q Consensus       174 ~v~~~~~~~-~L~-~~~vV~L~a~~e~l~~R  202 (278)
                        .  ..++ .+. .+.+|||++|.+++..|
T Consensus        69 --~--~~~~~~l~~~d~vi~Ld~p~~~~~~R   95 (167)
T PRK08118         69 --G--GTMDIRLNAADTIIFLDIPRTICLYR   95 (167)
T ss_pred             --c--hHHHHHHHhCCEEEEEeCCHHHHHHH
Confidence              1  1121 233 78999999999998877

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=99.27  E-value=1.4e-10  Score=102.12  Aligned_cols=163  Identities=17%  Similarity=0.179  Sum_probs=86.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCcee----cCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCC---
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF----DSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR---  165 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i----D~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~---  165 (278)
                      .+.|+|.||.|+||||+|+.||+++|.+.+    +-|.+++..+..  +.+ +.-.-+-.|..-..+-.++..+..+   
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~d--~~~-yaf~~QiyFL~~Rfk~~k~~~~~~~~i~   80 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYED--PER-YAFLLQIYFLLNRFKKIKKALSDKNNIL   80 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHHHh--HHH-hhHHHHHHHHHHHHHHHHHHhccccccc
Confidence            578999999999999999999999997653    444555544431  111 0000011221111111222222222   


Q ss_pred             --EEEEeC---------Cceeechh-------HHH----hh---h--CCcEEEEEcCHHHHHhh-hcCCCCCC-------
Q 023749          166 --LVVCAG---------NGAVQSSA-------NLA----LL---R--HGISLWIDVPPGMVARM-DHSGFPES-------  210 (278)
Q Consensus       166 --~VI~~g---------~g~v~~~~-------~~~----~L---~--~~~vV~L~a~~e~l~~R-~~r~rp~~-------  210 (278)
                        .|+...         .|.+ .+.       -++    .+   .  ++++|||+|+.+++.+| .+|||+.+       
T Consensus        81 drsI~eD~~lf~~~~~~~g~~-~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~~~  159 (216)
T COG1428          81 DRSIFEDYFLFAKLNFAKGTL-SPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGRPFEIDNFDEN  159 (216)
T ss_pred             CcchhhhHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHhCCCcccccccch
Confidence              122110         0000 011       111    12   1  57999999999999999 88998843       


Q ss_pred             -ChHHHHHHHHHHhhhccc-cCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          211 -EVLPQLFALYKEMRDGYA-TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       211 -~~~~~l~~~~~er~~~Y~-~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                       ++.+.+.+.|..+...|. ..++.|+.         +..+....++-.+.++..+.+++
T Consensus       160 ~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~---------~~~D~~~~~~d~~~v~~~I~~~~  210 (216)
T COG1428         160 KDYLKDLHRRYDDWFENYDACPVLGIDG---------DSIDFVNNEQDLEKVLDQILAKL  210 (216)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCeeeecc---------ceecccCCHHHHHHHHHHHHHHH
Confidence             234445555555555554 35667763         22343444444455555555444

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.26  E-value=4.7e-10  Score=96.56  Aligned_cols=155  Identities=16%  Similarity=0.175  Sum_probs=92.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH------HhCCCChHHHHHhhchhHhHHHHHHHHHHHHc-CC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE------AAGGESAAKAFRESDEKGYQQAETEVLKQLSS-MG  164 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~------~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~-~~  164 (278)
                      .|..++|+|++||||||+++.|+..++..+++.|.+...      ..| ....+   .....+...+...+...+.. ..
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   77 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQG-IPLTD---EDRLPWLERLNDASYSLYKKNET   77 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcC-CCCCc---ccchHHHHHHHHHHHHHHhcCCC
Confidence            578999999999999999999999999999999885321      112 11111   00111222222222222121 22


Q ss_pred             CEEEEeCCceeechhHHHhhh-C---CcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccc-cCc-EEEecC
Q 023749          165 RLVVCAGNGAVQSSANLALLR-H---GISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYA-TAD-VTVSLQ  237 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~~~~~L~-~---~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~-~AD-~vId~~  237 (278)
                      ..|+++    .+....++.++ .   -..|||++|++++.+| .+|.... ...+.+..++...++... ..+ +.||  
T Consensus        78 g~iv~s----~~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~-~~~~vl~~Q~~~~e~~~~~e~~~~~~d--  150 (176)
T PRK09825         78 GFIVCS----SLKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHF-MPPDLLQSQFDALERPCADEHDIARID--  150 (176)
T ss_pred             EEEEEE----ecCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCCC-CCHHHHHHHHHHcCCCCCCcCCeEEEE--
Confidence            233322    12333444444 2   2689999999999999 6554322 234566667665444322 234 3555  


Q ss_pred             cccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          238 KVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       238 ~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                                + ..+++++++.+.+.+.+.+
T Consensus       151 ----------~-~~~~~~~~~~~~~~~~~~~  170 (176)
T PRK09825        151 ----------V-NHDIENVTEQCRQAVQAFR  170 (176)
T ss_pred             ----------C-CCCHHHHHHHHHHHHHHHH
Confidence                      3 4578999999999987665

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.26  E-value=2.7e-11  Score=98.86  Aligned_cols=109  Identities=23%  Similarity=0.252  Sum_probs=64.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHH--HHHhhchhHhHHHHHHHHHHHH-cCCCEEEEeC
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAK--AFRESDEKGYQQAETEVLKQLS-SMGRLVVCAG  171 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~e--i~~~~ge~~fr~~e~~vl~~l~-~~~~~VI~~g  171 (278)
                      +|+++|+|||||||+++.|++.+++.+++.|.+.....+ .....  ..... ...+.+.-...+.... ...+.|++..
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~~vvd~~   78 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAG-EDPPSPSDYIEA-EERAYQILNAAIRKALRNGNSVVVDNT   78 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCC-SSSGCCCCCHHH-HHHHHHHHHHHHHHHHHTT-EEEEESS
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcc-cccccchhHHHH-HHHHHHHHHHHHHHHHHcCCCceeccC
Confidence            589999999999999999999999999999998887765 21110  00000 1111111112233333 3344455422


Q ss_pred             CceeechhHHH----hhh-CC---cEEEEEcCHHHHHhh-hcCCCC
Q 023749          172 NGAVQSSANLA----LLR-HG---ISLWIDVPPGMVARM-DHSGFP  208 (278)
Q Consensus       172 ~g~v~~~~~~~----~L~-~~---~vV~L~a~~e~l~~R-~~r~rp  208 (278)
                         ......++    .++ .+   .+|+|++|.+++.+| ..|++.
T Consensus        79 ---~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~  121 (143)
T PF13671_consen   79 ---NLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNRE  121 (143)
T ss_dssp             -----SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCC
T ss_pred             ---cCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCc
Confidence               22223332    223 34   689999999999999 555443

...

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.25  E-value=5.1e-12  Score=106.99  Aligned_cols=109  Identities=25%  Similarity=0.355  Sum_probs=64.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCE
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL  166 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~  166 (278)
                      +|..|||+|.+||||||+|+.|.++|   |  ..++|.|.+......  .+. +-.+.+.+..+.+ .++...+...+..
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~--dl~-fs~~dR~e~~rr~-~~~A~ll~~~G~i   76 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNA--DLG-FSKEDREENIRRI-AEVAKLLADQGII   76 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTT--T---SSHHHHHHHHHHH-HHHHHHHHHTTSE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCC--CCC-CCHHHHHHHHHHH-HHHHHHHHhCCCe
Confidence            47899999999999999999999988   3  457888887654332  211 1112233344332 1223344445656


Q ss_pred             EEEeCCceeechhHHHhh----hC--CcEEEEEcCHHHHHhhhcCC
Q 023749          167 VVCAGNGAVQSSANLALL----RH--GISLWIDVPPGMVARMDHSG  206 (278)
Q Consensus       167 VI~~g~g~v~~~~~~~~L----~~--~~vV~L~a~~e~l~~R~~r~  206 (278)
                      ||++.  +....+.++..    ..  -+.|||+||.+++.+|+.++
T Consensus        77 vIva~--isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~Kg  120 (156)
T PF01583_consen   77 VIVAF--ISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDPKG  120 (156)
T ss_dssp             EEEE------SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTTTS
T ss_pred             EEEee--ccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCchh
Confidence            66542  12223333333    33  36799999999999995444

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.25  E-value=2.7e-10  Score=97.34  Aligned_cols=30  Identities=30%  Similarity=0.326  Sum_probs=26.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHh---CCceec
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYFD  123 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD  123 (278)
                      +.|+|.|++||||||+++.|++.+   |+.++.
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~   33 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVL   33 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            579999999999999999999998   665543

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.23  E-value=1.6e-10  Score=99.15  Aligned_cols=107  Identities=15%  Similarity=0.148  Sum_probs=64.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHHHHHHHH-HHHc---CCC
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVLK-QLSS---MGR  165 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~e~~vl~-~l~~---~~~  165 (278)
                      +|+|+|+|||||||+|+.||+++|+++++.|+++++.....+     +.+.+.. |.....++...++. .+..   ...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~l~~~~~~~~   79 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDS-GKLVPDEIVIKLLKERLKKPDCKKG   79 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHc-CCccCHHHHHHHHHHHHhcccccCC
Confidence            489999999999999999999999999999999877543111     1122221 21111222222222 2222   233


Q ss_pred             EEEEeCCceeechhHHHhh--------hCCcEEEEEcCHHHHHhh-hcC
Q 023749          166 LVVCAGNGAVQSSANLALL--------RHGISLWIDVPPGMVARM-DHS  205 (278)
Q Consensus       166 ~VI~~g~g~v~~~~~~~~L--------~~~~vV~L~a~~e~l~~R-~~r  205 (278)
                      +|++ |  +.........+        ..+++|||++|.+++.+| ..|
T Consensus        80 ~vld-g--~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R  125 (194)
T cd01428          80 FILD-G--FPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGR  125 (194)
T ss_pred             EEEe-C--CCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence            4543 2  22222222222        146899999999999999 444

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.23  E-value=9.2e-11  Score=120.67  Aligned_cols=79  Identities=8%  Similarity=-0.016  Sum_probs=51.3

Q ss_pred             CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749          186 HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       186 ~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i  264 (278)
                      +++-|||+|+++++++| -.+... .+ .+.+.+...+|+.  ... -.+.+-..+...-++||+++++||+++.|.+++
T Consensus       155 a~~K~~l~A~~~~Ra~Rr~~~~~~-~~-~~~~~~~~~~Rd~--~d~-R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i  229 (712)
T PRK09518        155 AEVRILLTAREEVRQARRSGQDRS-ET-PGVVLEDVAARDE--ADS-KVTSFLSAADGVTTLDNSDLDFDETLDLLIGLV  229 (712)
T ss_pred             CCeEEEEECCHHHHHHHHHHhhhc-CC-HHHHHHHHHHHhh--hcc-cccCCCCCCCCeEEEECCCCCHHHHHHHHHHHH
Confidence            46889999999999998 211111 22 2333333344432  112 333444455555667799999999999999999


Q ss_pred             hhcCC
Q 023749          265 NASIS  269 (278)
Q Consensus       265 ~~~~~  269 (278)
                      +..++
T Consensus       230 ~~~~~  234 (712)
T PRK09518        230 EDAIE  234 (712)
T ss_pred             Hhhhh
Confidence            88776

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=99.22  E-value=1.6e-10  Score=101.20  Aligned_cols=154  Identities=17%  Similarity=0.148  Sum_probs=87.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-CC-hHHHHHhhchhHh----------------------H
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES-AAKAFRESDEKGY----------------------Q  150 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~~-i~ei~~~~ge~~f----------------------r  150 (278)
                      .|.|+|++||||||+++.|++ +|++++|.|.+.++.+.. .. ..++...+|...+                      .
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~   79 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK   79 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence            478999999999999999976 799999999998776531 11 1223333332221                      0


Q ss_pred             HHHH--------HHHHHHH--cCCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcC-CCCCCChHHHHHH
Q 023749          151 QAET--------EVLKQLS--SMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQLFA  218 (278)
Q Consensus       151 ~~e~--------~vl~~l~--~~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~l~~  218 (278)
                      .+|.        ++.+.+.  .....|+...  ..+.+.++.. ..+.+||+++|++++.+| ..| +...++....+..
T Consensus        80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~--pLL~E~~~~~-~~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~~  156 (196)
T PRK14732         80 ALNELIHPLVRKDFQKILQTTAEGKLVIWEV--PLLFETDAYT-LCDATVTVDSDPEESILRTISRDGMKKEDVLARIAS  156 (196)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhcCCcEEEEe--eeeeEcCchh-hCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            1110        0000111  1122233211  1222333221 158999999999999999 444 4443333333333


Q ss_pred             HHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          219 LYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       219 ~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                      ++.. ...-+.||++|+|             +.+.+++..++.+++..
T Consensus       157 Q~~~-~~k~~~aD~vI~N-------------~~~~~~l~~~v~~l~~~  190 (196)
T PRK14732        157 QLPI-TEKLKRADYIVRN-------------DGNREGLKEECKILYST  190 (196)
T ss_pred             cCCH-HHHHHhCCEEEEC-------------CCCHHHHHHHHHHHHHH
Confidence            3211 1111269999985             45899999888877754

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.22  E-value=9.8e-11  Score=103.09  Aligned_cols=161  Identities=17%  Similarity=0.148  Sum_probs=89.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC--CChHHHHHhhc----------------hhHhHHH-H
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ESAAKAFRESD----------------EKGYQQA-E  153 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~--~~i~ei~~~~g----------------e~~fr~~-e  153 (278)
                      .+.|.|+|++||||||+++.+++ +|++++|+|.+.++.+..  .....+...+|                +..|.+. +
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~   80 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA   80 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence            46899999999999999999998 999999999998865421  11112222222                1222211 1


Q ss_pred             HHHHHHHHc----CCC-EEEE-eCCce-eec-hhHHHh-h-h-CCcEEEEEcCHHHHHhh-hcCC-CCCCChHHHHHHHH
Q 023749          154 TEVLKQLSS----MGR-LVVC-AGNGA-VQS-SANLAL-L-R-HGISLWIDVPPGMVARM-DHSG-FPESEVLPQLFALY  220 (278)
Q Consensus       154 ~~vl~~l~~----~~~-~VI~-~g~g~-v~~-~~~~~~-L-~-~~~vV~L~a~~e~l~~R-~~r~-rp~~~~~~~l~~~~  220 (278)
                      ...|+.+..    ..- .++. ...++ +.. |--.+. . . .+.+|+++||++++.+| .+|+ ...++....+..+.
T Consensus        81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~~~~~~~Q~  160 (201)
T COG0237          81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEEDAEARLASQR  160 (201)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHhcC
Confidence            112222210    000 0000 00001 111 111111 1 1 35799999999999999 5555 22222333344443


Q ss_pred             HHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          221 KEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       221 ~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                      ..++. +..||.+++|             +.++++..+++.+.+....
T Consensus       161 ~~~ek-~~~ad~vi~n-------------~~~i~~l~~~i~~~~~~~~  194 (201)
T COG0237         161 DLEEK-LALADVVIDN-------------DGSIENLLEQIEKLLKELL  194 (201)
T ss_pred             CHHHH-HhhcCChhhc-------------CCCHHHHHHHHHHHHHHHH
Confidence            33332 5579999985             5788888888888776554

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.22  E-value=2.5e-10  Score=105.01  Aligned_cols=131  Identities=15%  Similarity=0.118  Sum_probs=74.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh-CCceecCchHHHHHhCCCChHH-HHHhhchhHhHHHHHHHHHHHHc-CCCEEEE
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGESAAK-AFRESDEKGYQQAETEVLKQLSS-MGRLVVC  169 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L-g~~~iD~D~li~~~~g~~~i~e-i~~~~ge~~fr~~e~~vl~~l~~-~~~~VI~  169 (278)
                      +++|+++|+|||||||+|+.|++.+ ++.+++.|.+.+...+...... .+...++..........+..... ....|++
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIid   81 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVIIS   81 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence            5689999999999999999999999 9999999998776554111000 11111222233333333333333 3444554


Q ss_pred             eCCceeechhHHHh-hh-CC---cEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhh
Q 023749          170 AGNGAVQSSANLAL-LR-HG---ISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMR  224 (278)
Q Consensus       170 ~g~g~v~~~~~~~~-L~-~~---~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~  224 (278)
                      ...........+.. ++ .+   .+|||++|.+++.+| ..|+... ...+.+.+++...+
T Consensus        82 ~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~-~~~~~i~~~~~~~~  141 (300)
T PHA02530         82 DTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGERA-VPEDVLRSMFKQMK  141 (300)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcCC-CCHHHHHHHHHHHH
Confidence            32211111112222 22 22   379999999999999 6664322 12345555544433

>PRK06547 hypothetical protein; Provisional

Probab=99.21  E-value=4e-11  Score=103.01  Aligned_cols=113  Identities=22%  Similarity=0.259  Sum_probs=68.5

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHH--HHHHHHH--HH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQA--ETEVLKQ--LS  161 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~--e~~vl~~--l~  161 (278)
                      -..+.|.|.|++||||||+|+.|++.+++++++.|+++....+ ..     +.+.+...|+..+...  .......  ..
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~~l   91 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHG-LAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWVSV   91 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccccc-CChHHHHHHHHHHhCCCCceecCCCCCCCCCCcEEe
Confidence            3456788889999999999999999999999999998754322 21     1122222222211110  0000000  01


Q ss_pred             cCCCEEEEeCCceeechhHHHhhh-CC--cEEEEEcCHHHHHhh-hcC
Q 023749          162 SMGRLVVCAGNGAVQSSANLALLR-HG--ISLWIDVPPGMVARM-DHS  205 (278)
Q Consensus       162 ~~~~~VI~~g~g~v~~~~~~~~L~-~~--~vV~L~a~~e~l~~R-~~r  205 (278)
                      ...+.||..|.+.. .+..++.+. .+  +.|||++|.+++.+| ..|
T Consensus        92 ~~~~vVIvEG~~al-~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~R  138 (172)
T PRK06547         92 EPGRRLIIEGVGSL-TAANVALASLLGEVLTVWLDGPEALRKERALAR  138 (172)
T ss_pred             CCCCeEEEEehhhc-cHHHHHHhccCCCEEEEEEECCHHHHHHHHHhc
Confidence            12345666666554 344554443 33  789999999999999 544

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.21  E-value=7.5e-11  Score=101.34  Aligned_cols=38  Identities=24%  Similarity=0.254  Sum_probs=34.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG  133 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g  133 (278)
                      .|.|+|++||||||+++.|++ +|++++|+|.+.++.+.
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~   38 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYE   38 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhh
Confidence            489999999999999999998 99999999999887653

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=6.3e-12  Score=126.21  Aligned_cols=78  Identities=26%  Similarity=0.178  Sum_probs=72.1

Q ss_pred             cccCCCcceecccccCCccccccccc-----------cCCcc----HHHHHHHHhhh------hccCCcEEEEEccCCCc
Q 023749           47 IISRKPRITTRSIADDTTSNTVTKVA-----------AEDPS----FAVKKKAADIS------TELKGTSVFLVGMNNAI  105 (278)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~----~~~~~~~~~~~------~~~~~~~I~L~G~~GSG  105 (278)
                      +.+|+++.++|||.||..++||++.+           .||.+    ..+|+|+.|++      +.++|+.++|+||||+|
T Consensus       283 ~~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVG  362 (782)
T COG0466         283 SPMSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVG  362 (782)
T ss_pred             CCCCchHHHHHHHHHHHHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCC
Confidence            67889999999999999999998887           77877    79999999988      78899999999999999


Q ss_pred             HHHHHHHHHHHhCCceecC
Q 023749          106 KTHLGKFLADALRYYYFDS  124 (278)
Q Consensus       106 KSTlAk~LAe~Lg~~~iD~  124 (278)
                      ||++|+.+|+.+|..|+..
T Consensus       363 KTSLgkSIA~al~RkfvR~  381 (782)
T COG0466         363 KTSLGKSIAKALGRKFVRI  381 (782)
T ss_pred             chhHHHHHHHHhCCCEEEE
Confidence            9999999999999998753

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=99.20  E-value=4.1e-11  Score=103.77  Aligned_cols=139  Identities=17%  Similarity=0.163  Sum_probs=76.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-CC-hHHHHHhhchhHh----------------H-----
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES-AAKAFRESDEKGY----------------Q-----  150 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~~-i~ei~~~~ge~~f----------------r-----  150 (278)
                      +.|.|+|.+||||||+++.|++ +|++++|+|.+.++.+.. .. ...+...+|.+.+                .     
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~   79 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL   79 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence            4789999999999999999988 999999999998887641 11 1223333332221                1     


Q ss_pred             -HHHH--------HHHHHHHc--CCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh--hcCCCCCCChHHHHH
Q 023749          151 -QAET--------EVLKQLSS--MGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM--DHSGFPESEVLPQLF  217 (278)
Q Consensus       151 -~~e~--------~vl~~l~~--~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R--~~r~rp~~~~~~~l~  217 (278)
                       .++.        ++.+.+..  ....++...  ..+.+.++.. ..+.+|++.||.+++.+|  ++++.+.++....+.
T Consensus        80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~--pLL~E~~~~~-~~D~vi~V~a~~e~ri~Rl~~R~~~~~~~~~~ri~  156 (180)
T PF01121_consen   80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVEI--PLLFESGLEK-LCDEVIVVYAPEEIRIKRLMERDGLSEEEAEARIA  156 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE---TTTTTTTGGG-GSSEEEEEE--HHHHHHHHHHHHTSTHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHhccCCCEEEEEc--chhhhhhHhh-hhceEEEEECCHHHHHHHHHhhCCCcHHHHHHHHH
Confidence             1111        01111111  113333321  1222333211 168999999999999999  555666544444555


Q ss_pred             HHHHHhhhccccCcEEEecC
Q 023749          218 ALYKEMRDGYATADVTVSLQ  237 (278)
Q Consensus       218 ~~~~er~~~Y~~AD~vId~~  237 (278)
                      .|+.... ..+.||++|+|+
T Consensus       157 ~Q~~~~~-k~~~ad~vI~N~  175 (180)
T PF01121_consen  157 SQMPDEE-KRKRADFVIDNN  175 (180)
T ss_dssp             TS--HHH-HHHH-SEEEE-S
T ss_pred             hCCCHHH-HHHhCCEEEECC
Confidence            4443322 123699999974

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PRK13973 thymidylate kinase; Provisional

Probab=99.16  E-value=1.9e-09  Score=95.24  Aligned_cols=159  Identities=18%  Similarity=0.199  Sum_probs=85.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh---CCceecC--------chHHHHHhCCC---Ch---HH--HHHhhchhHhHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDS--------DSLVFEAAGGE---SA---AK--AFRESDEKGYQQA  152 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD~--------D~li~~~~g~~---~i---~e--i~~~~ge~~fr~~  152 (278)
                      +|+.|+|.|+.||||||+++.|++.|   |++++.+        ...+++.....   ..   .+  +|..   ..+...
T Consensus         2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a---~r~~~~   78 (213)
T PRK13973          2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA---ARDDHV   78 (213)
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH---HHHHHH
Confidence            58899999999999999999999999   8887654        33333322100   00   00  1110   111111


Q ss_pred             HHHHHHHHHcCCCEEEEeCC--------cee--echhHHHhh--------hCCcEEEEEcCHHHHHhh-hcCCCC-----
Q 023749          153 ETEVLKQLSSMGRLVVCAGN--------GAV--QSSANLALL--------RHGISLWIDVPPGMVARM-DHSGFP-----  208 (278)
Q Consensus       153 e~~vl~~l~~~~~~VI~~g~--------g~v--~~~~~~~~L--------~~~~vV~L~a~~e~l~~R-~~r~rp-----  208 (278)
                      +..+...+ ..+..||+...        ++.  ........+        +++++|||++|++++.+| ..|+..     
T Consensus        79 ~~~i~~~l-~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~  157 (213)
T PRK13973         79 EEVIRPAL-ARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDR  157 (213)
T ss_pred             HHHHHHHH-HCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCc
Confidence            22222223 34556665431        000  011111111        268999999999999999 544321     


Q ss_pred             -CCChHHHHH---HHHHHhhhccccCc-EEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          209 -ESEVLPQLF---ALYKEMRDGYATAD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       209 -~~~~~~~l~---~~~~er~~~Y~~AD-~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                       ..+..+.+.   ..|.+....|. .. .+||             ...++|++.++|..++.+.+
T Consensus       158 ~e~~~~~~~~~~~~~y~~l~~~~~-~~~~~Id-------------a~~~~e~V~~~I~~~i~~~~  208 (213)
T PRK13973        158 FEKEDLAFHEKRREAFLQIAAQEP-ERCVVID-------------ATASPEAVAAEIWAAVDQRL  208 (213)
T ss_pred             hhhchHHHHHHHHHHHHHHHHhCC-CcEEEEc-------------CCCCHHHHHHHHHHHHHHHH
Confidence             111112222   22322221111 01 3454             46799999999999987654

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=99.15  E-value=1.7e-10  Score=108.92  Aligned_cols=95  Identities=18%  Similarity=0.237  Sum_probs=69.9

Q ss_pred             EEEEccCCCcHHHHHHHHHHHhCCc------eecCchHH-----HHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCC
Q 023749           96 VFLVGMNNAIKTHLGKFLADALRYY------YFDSDSLV-----FEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG  164 (278)
Q Consensus        96 I~L~G~~GSGKSTlAk~LAe~Lg~~------~iD~D~li-----~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~  164 (278)
                      ++|+|+|||||||+++.|++.|+..      +++.|+++     +...| ++++++|+     .||+.    +.++..  
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~-~~~~~~~k-----~~R~~----i~~~le--   69 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQS-REIPSQWK-----QFRQE----LLKYLE--   69 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcC-CCcHHHHH-----HHHHH----HHHHHH--
Confidence            6899999999999999999887633      89999998     55555 77787774     35532    223222  


Q ss_pred             CEEEEeCCceeec----------hhHHHhhh-CCcEEEEEcCHHHHHhh
Q 023749          165 RLVVCAGNGAVQS----------SANLALLR-HGISLWIDVPPGMVARM  202 (278)
Q Consensus       165 ~~VI~~g~g~v~~----------~~~~~~L~-~~~vV~L~a~~e~l~~R  202 (278)
                      +.|+++|+|+.+.          ++++..|+ +|++|||+++.+....|
T Consensus        70 ~~v~a~~~g~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~r  118 (340)
T TIGR03575        70 HFLVAVINGSELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHS  118 (340)
T ss_pred             HHHHHhcCcccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHH
Confidence            2355667777653          34456666 89999999999999988

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=99.15  E-value=4.2e-10  Score=97.00  Aligned_cols=151  Identities=15%  Similarity=0.170  Sum_probs=79.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCce--ecCchHHHHHhCCCCh-HHHHHh--h---chhHhHHHH---HHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYY--FDSDSLVFEAAGGESA-AKAFRE--S---DEKGYQQAE---TEVLKQLS  161 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~--iD~D~li~~~~g~~~i-~ei~~~--~---ge~~fr~~e---~~vl~~l~  161 (278)
                      |++|+|.|+|.|||||+|+.|.+.+.-+|  +..|.++..+..+... ...+..  .   +...++...   ...++.++
T Consensus         1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a   80 (174)
T PF07931_consen    1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMA   80 (174)
T ss_dssp             --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999998664  5668777642210000 000000  0   012222222   22345555


Q ss_pred             cCCCEEEEeCCceeechh----HH-Hhhh-CC-cEEEEEcCHHHHHhh-hcC-CCCCCChHHHHHHHHHHhhhccc--cC
Q 023749          162 SMGRLVVCAGNGAVQSSA----NL-ALLR-HG-ISLWIDVPPGMVARM-DHS-GFPESEVLPQLFALYKEMRDGYA--TA  230 (278)
Q Consensus       162 ~~~~~VI~~g~g~v~~~~----~~-~~L~-~~-~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~l~~~~~er~~~Y~--~A  230 (278)
                      ..+..||..  .++..+.    .+ +.|. .. +.|-+.||.+++.+| ..| .|+..  .  -+.+++   ..++  ..
T Consensus        81 ~aG~~VIvD--~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G--~--a~~q~~---~Vh~~~~Y  151 (174)
T PF07931_consen   81 RAGNNVIVD--DVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIG--L--AAWQAE---HVHEGGRY  151 (174)
T ss_dssp             HTT-EEEEE--E--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTT--H--HHHHTT---GGGTT---
T ss_pred             hCCCCEEEe--cCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchH--H--HHHHHh---hcccCCCC
Confidence            556666643  2233222    12 3343 22 678899999999999 333 34432  1  112222   1233  46


Q ss_pred             cEEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749          231 DVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       231 D~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i  264 (278)
                      |+.||            |+..||+|+|++|++.+
T Consensus       152 DleVD------------Ts~~sp~ecA~~I~~~~  173 (174)
T PF07931_consen  152 DLEVD------------TSATSPEECAREILARL  173 (174)
T ss_dssp             SEEEE------------TTSS-HHHHHHHHHTT-
T ss_pred             CEEEE------------CCCCCHHHHHHHHHHHh
Confidence            88887            89999999999998765

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.14  E-value=1.2e-09  Score=94.35  Aligned_cols=159  Identities=15%  Similarity=0.123  Sum_probs=83.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHHHHHHHHH-HHcC--CC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVLKQ-LSSM--GR  165 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~e~~vl~~-l~~~--~~  165 (278)
                      ++|+|+|+|||||||+|+.||++++++++|++++++......+     +..+.. .|+-.-.+.-..++.. +...  ..
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~-~g~lv~d~i~~~~v~~rl~~~d~~~   79 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYID-KGELVPDEIVNGLVKERLDEADCKA   79 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHH-cCCccchHHHHHHHHHHHHhhcccC
Confidence            5799999999999999999999999999999998876443111     111111 1221111111122222 2111  11


Q ss_pred             EEEEeCCce-eechhHHH-hhh-----CCcEEEEEcCHHHHHhh-hcCC-CCCCChHHHHHHHHHHhhhccc-cCcEEEe
Q 023749          166 LVVCAGNGA-VQSSANLA-LLR-----HGISLWIDVPPGMVARM-DHSG-FPESEVLPQLFALYKEMRDGYA-TADVTVS  235 (278)
Q Consensus       166 ~VI~~g~g~-v~~~~~~~-~L~-----~~~vV~L~a~~e~l~~R-~~r~-rp~~~~~~~l~~~~~er~~~Y~-~AD~vId  235 (278)
                      .+|-.|-+- +.-...++ .|.     .+.++.++++.+.+..| ..|. |+.+. .+.+.+.    ...|. ....+++
T Consensus        80 ~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r~dd~-~~~~~~R----~~~y~~~~~pli~  154 (178)
T COG0563          80 GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVREDDN-EETVKKR----LKVYHEQTAPLIE  154 (178)
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccccccCC-HHHHHHH----HHHHHhcccchhh
Confidence            233333211 11011111 111     36799999999999999 4332 44332 2333332    22222 2222222


Q ss_pred             cCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749          236 LQKVASQLGYDDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       236 ~~~va~~~~~~Dts~~tpeeva~~I~~~i  264 (278)
                      ...     .-+| +..+++++.+.+.+.+
T Consensus       155 ~y~-----~~id-~~~~i~~v~~~i~~~l  177 (178)
T COG0563         155 YYS-----VTID-GSGEIEEVLADILKAL  177 (178)
T ss_pred             hhe-----eecc-CCCCHHHHHHHHHHhh
Confidence            110     0112 5689999999988765

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.14  E-value=1.3e-09  Score=94.36  Aligned_cols=26  Identities=23%  Similarity=0.359  Sum_probs=24.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|+.|+|.|++||||||+++.|++.+
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l   27 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELL   27 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999999987

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=99.14  E-value=4.3e-10  Score=103.30  Aligned_cols=141  Identities=20%  Similarity=0.245  Sum_probs=82.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHH-cCCC--EEEEe
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLS-SMGR--LVVCA  170 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~-~~~~--~VI~~  170 (278)
                      ..|+|+|++||||||..+.| |.+||.++|+  +-..         ++..     |.+.    +.+-. ....  .+|+.
T Consensus         2 ~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvDN--lP~~---------Ll~~-----l~~~----~~~~~~~~~~~Ai~iD~   60 (284)
T PF03668_consen    2 ELVIITGLSGAGKSTALRAL-EDLGYYCVDN--LPPS---------LLPQ-----LIEL----LAQSNSKIEKVAIVIDI   60 (284)
T ss_pred             eEEEEeCCCcCCHHHHHHHH-HhcCeeEEcC--CcHH---------HHHH-----HHHH----HHhcCCCCceEEEEEeC
Confidence            46889999999999999999 6699999885  2211         2211     1100    00000 0111  22332


Q ss_pred             CCceeec--hhHHHhhh-CC---cEEEEEcCHHHHHhh--h-cCCCCCCChHHHHHHHHHHhhh---ccccCcEEEecCc
Q 023749          171 GNGAVQS--SANLALLR-HG---ISLWIDVPPGMVARM--D-HSGFPESEVLPQLFALYKEMRD---GYATADVTVSLQK  238 (278)
Q Consensus       171 g~g~v~~--~~~~~~L~-~~---~vV~L~a~~e~l~~R--~-~r~rp~~~~~~~l~~~~~er~~---~Y~~AD~vId~~~  238 (278)
                      .++....  ......++ .+   .+|||+|+.+++.+|  + +|..|.......++.+-.||+-   ..+.||++||   
T Consensus        61 R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad~vID---  137 (284)
T PF03668_consen   61 RSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERADLVID---  137 (284)
T ss_pred             CChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCCEEEE---
Confidence            2211110  11222232 22   589999999999999  3 4455532211122333344443   3337999998   


Q ss_pred             ccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          239 VASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       239 va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                               |+++++.|+.+.|.+.+...
T Consensus       138 ---------Ts~l~~~~Lr~~i~~~~~~~  157 (284)
T PF03668_consen  138 ---------TSNLSVHQLRERIRERFGGD  157 (284)
T ss_pred             ---------CCCCCHHHHHHHHHHHhccC
Confidence                     89999999999999988743

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PLN02924 thymidylate kinase

Probab=99.10  E-value=2.3e-09  Score=95.55  Aligned_cols=171  Identities=14%  Similarity=0.142  Sum_probs=87.0

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH----HhCCCChHHHHHhh------ch-hHhHH--HH-HHH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE----AAGGESAAKAFRES------DE-KGYQQ--AE-TEV  156 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~----~~g~~~i~ei~~~~------ge-~~fr~--~e-~~v  156 (278)
                      -+|+.|+|.|..||||||+++.|++.|+...+......+.    ..| ..+.+++...      .+ -.|..  .+ ...
T Consensus        14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g-~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~   92 (220)
T PLN02924         14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVG-QMISAYLSNKSQLDDRAIHLLFSANRWEKRSL   92 (220)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999999996443321110000    000 0111111100      00 00111  01 011


Q ss_pred             HHHHHcCCCEEEEeCCce---e------echhHHHh----h-hCCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHH
Q 023749          157 LKQLSSMGRLVVCAGNGA---V------QSSANLAL----L-RHGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYK  221 (278)
Q Consensus       157 l~~l~~~~~~VI~~g~g~---v------~~~~~~~~----L-~~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~  221 (278)
                      +......+..||+...-.   +      ...+....    + +++++|||++|+++..+| ..++...+ ..+.+.+..+
T Consensus        93 I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~~~~E-~~~~~~rv~~  171 (220)
T PLN02924         93 MERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGERYE-KLEFQKKVAK  171 (220)
T ss_pred             HHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccc-cHHHHHHHHH
Confidence            223333455666543110   0      00011111    1 268999999999999999 32211111 1233333222


Q ss_pred             HhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC-----CCccccc
Q 023749          222 EMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS-----DPTSRLL  276 (278)
Q Consensus       222 er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~-----~~~~~~~  276 (278)
                      .........-.+||             ...++|++.++|.+.+...++     +|.|||.
T Consensus       172 ~Y~~la~~~~~vID-------------a~~sieeV~~~I~~~I~~~l~~~~~~~~~~~~~  218 (220)
T PLN02924        172 RFQTLRDSSWKIID-------------ASQSIEEVEKKIREVVLDTVQRCLAGKPLSRLW  218 (220)
T ss_pred             HHHHHhhcCEEEEC-------------CCCCHHHHHHHHHHHHHHHHHhccccCcHHHhc
Confidence            21111111112344             358999999999998877553     8888875

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.08  E-value=1.5e-09  Score=95.10  Aligned_cols=38  Identities=18%  Similarity=0.106  Sum_probs=32.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC---CceecCchHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLVF  129 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg---~~~iD~D~li~  129 (278)
                      ++..|.|+|++||||||+++.|++.++   +.+++.|.+..
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~   45 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK   45 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence            567899999999999999999999983   45678887653

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=99.06  E-value=2e-09  Score=112.32  Aligned_cols=40  Identities=18%  Similarity=0.136  Sum_probs=36.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~  131 (278)
                      .+..|.|.|++||||||+|+.||++||+.|+|++.+++..
T Consensus        33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~   72 (863)
T PRK12269         33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF   72 (863)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence            4568999999999999999999999999999999988764

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.06  E-value=4.7e-09  Score=90.43  Aligned_cols=28  Identities=25%  Similarity=0.387  Sum_probs=25.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      +|+.|+|.|++||||||+++.|++.++.
T Consensus         2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~   29 (195)
T TIGR00041         2 RGMFIVIEGIDGAGKTTQANLLKKLLQE   29 (195)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999853

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PLN02842 nucleotide kinase

Probab=99.04  E-value=4.4e-09  Score=103.72  Aligned_cols=102  Identities=15%  Similarity=0.148  Sum_probs=60.6

Q ss_pred             EEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC-C----CChHHHHHhhchhHhHHHHHHHHHHHHc-----CCCE
Q 023749           97 FLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-G----ESAAKAFRESDEKGYQQAETEVLKQLSS-----MGRL  166 (278)
Q Consensus        97 ~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g-~----~~i~ei~~~~ge~~fr~~e~~vl~~l~~-----~~~~  166 (278)
                      +|+|+|||||||+|+.|++++|+.++++++++..... +    ..+.+++. .|+....+.-..++.+...     ...+
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~-~G~lvPdeiv~~ll~drl~~~~~~~~G~   79 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMN-SGRLVPDEIVIAMVTGRLSREDAKEKGW   79 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHh-CCCCCcHHHHHHHHHHHHhCccccCCcE
Confidence            4789999999999999999999999999998865421 1    12333332 1221111111112222111     1234


Q ss_pred             EEEeCCceeechhHHHhhh-----CCcEEEEEcCHHHHHhh
Q 023749          167 VVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM  202 (278)
Q Consensus       167 VI~~g~g~v~~~~~~~~L~-----~~~vV~L~a~~e~l~~R  202 (278)
                      |+ .|  +.......+.|.     .+++|+|++|.+++.+|
T Consensus        80 IL-DG--fPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleR  117 (505)
T PLN02842         80 LL-DG--YPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDR  117 (505)
T ss_pred             EE-eC--CCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHH
Confidence            44 22  322222222332     57899999999999998

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=99.04  E-value=2.3e-10  Score=91.05  Aligned_cols=34  Identities=26%  Similarity=0.376  Sum_probs=32.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceecCchHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV  128 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li  128 (278)
                      +|+|+|+|||||||+|+.||+.+|+++++.|+++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~   34 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI   34 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence            5899999999999999999999999999999954

...

>PRK07261 topology modulation protein; Provisional

Probab=99.03  E-value=8.9e-10  Score=94.25  Aligned_cols=94  Identities=12%  Similarity=0.142  Sum_probs=60.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g  173 (278)
                      ++|+|+|++||||||+|+.|++.+|+++++.|.+.+.. ++.       ....+.+..    .+..+...+.+|++ |. 
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~-~~~-------~~~~~~~~~----~~~~~~~~~~wIid-g~-   66 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP-NWQ-------ERDDDDMIA----DISNFLLKHDWIID-GN-   66 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc-ccc-------cCCHHHHHH----HHHHHHhCCCEEEc-Cc-
Confidence            57999999999999999999999999999999876431 101       111111211    12233344556664 32 


Q ss_pred             eeechhHHHhhh-CCcEEEEEcCHHHHHhh
Q 023749          174 AVQSSANLALLR-HGISLWIDVPPGMVARM  202 (278)
Q Consensus       174 ~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R  202 (278)
                       .........+. .+.+|||++|.+++..|
T Consensus        67 -~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R   95 (171)
T PRK07261         67 -YSWCLYEERMQEADQIIFLNFSRFNCLYR   95 (171)
T ss_pred             -chhhhHHHHHHHCCEEEEEcCCHHHHHHH
Confidence             22111112233 78999999999999887

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=99.02  E-value=1.4e-09  Score=91.44  Aligned_cols=159  Identities=19%  Similarity=0.275  Sum_probs=92.3

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR  165 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~  165 (278)
                      -+|..||++|.+||||||+|-.|++.|-     ...+|.|.+..-...  ++. +-.+++.+..|.+- ++.+-++ . .
T Consensus        29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~--DL~-F~a~dR~ENIRRig-eVaKLFA-D-a  102 (207)
T KOG0635|consen   29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNK--DLG-FKAEDRNENIRRIG-EVAKLFA-D-A  102 (207)
T ss_pred             CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccccc--ccC-cchhhhhhhHHHHH-HHHHHHh-c-c
Confidence            4799999999999999999999999883     346788887654322  211 11223344454432 2222233 2 2


Q ss_pred             EEEEeCCce-ee---chhHHHhhh-CC-cEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc---cCcEEEec
Q 023749          166 LVVCAGNGA-VQ---SSANLALLR-HG-ISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA---TADVTVSL  236 (278)
Q Consensus       166 ~VI~~g~g~-v~---~~~~~~~L~-~~-~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~---~AD~vId~  236 (278)
                      +||+...-+ +.   +...+++++ .+ +-||+++|.+++.+|+-++.........++. |.-....|+   ++.+++..
T Consensus       103 g~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKg-FTGIddPYEaP~~cEi~l~~  181 (207)
T KOG0635|consen  103 GVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDPKGLYKLARAGKIKG-FTGIDDPYEAPLNCEIVLKS  181 (207)
T ss_pred             ceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccCchhHHHHHhcccccc-cccCCCcccCCCCcEEEEcc
Confidence            345432111 11   122344555 34 5699999999999994333221000001211 223344565   46777753


Q ss_pred             CcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          237 QKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       237 ~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                                 .+..+|+++++.|.+++..+
T Consensus       182 -----------~~~~sp~~mae~iv~YL~~k  201 (207)
T KOG0635|consen  182 -----------HESSSPEEMAEIIVSYLDNK  201 (207)
T ss_pred             -----------CCCCCHHHHHHHHHHHHhhc
Confidence                       46778999999999998743

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=99.01  E-value=4.3e-09  Score=91.34  Aligned_cols=35  Identities=17%  Similarity=0.169  Sum_probs=29.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHh---CCceecCchHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVF  129 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD~D~li~  129 (278)
                      .|.|+|++||||||+++.|+..+   +..+++.|++..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~   38 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK   38 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence            47899999999999999999987   366788888664

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK06696 uridine kinase; Validated

Probab=99.01  E-value=4.7e-09  Score=93.22  Aligned_cols=37  Identities=19%  Similarity=0.189  Sum_probs=30.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh---CCcee--cCchHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYF--DSDSLV  128 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~~i--D~D~li  128 (278)
                      .+.+|.|.|++||||||+|+.|++.|   |.+++  ++|+++
T Consensus        21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~   62 (223)
T PRK06696         21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH   62 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence            46688999999999999999999999   65554  478775

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=99.01  E-value=2.6e-08  Score=84.98  Aligned_cols=161  Identities=16%  Similarity=0.172  Sum_probs=96.2

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh-CCceecCchHHHHHhCCCC---hHHHHHhhchhHhHHHHHHHHHHHHcCCC-EE
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGES---AAKAFRESDEKGYQQAETEVLKQLSSMGR-LV  167 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L-g~~~iD~D~li~~~~g~~~---i~ei~~~~ge~~fr~~e~~vl~~l~~~~~-~V  167 (278)
                      .+.++++|.||+||||+.+.+.+.+ +..+++..+++-+......   ..+-......+..+++...+.+++..+.. .|
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~~ii   83 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEMALEII   83 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHHhcCCHHHHHHHHHHHHHHHHHhhhceE
Confidence            3789999999999999999999999 7777887777654432111   11222222233444454455555555443 45


Q ss_pred             EEeC------Cceee-chh-HHHhhhCCcEEEEEcCHHHHHhh---h-cCCCCCCChHHHHHHHH-HHhhhcc--c---c
Q 023749          168 VCAG------NGAVQ-SSA-NLALLRHGISLWIDVPPGMVARM---D-HSGFPESEVLPQLFALY-KEMRDGY--A---T  229 (278)
Q Consensus       168 I~~g------~g~v~-~~~-~~~~L~~~~vV~L~a~~e~l~~R---~-~r~rp~~~~~~~l~~~~-~er~~~Y--~---~  229 (278)
                      +++.      .|.+. .|. -++.+.++.+|.|.++++.+..|   + +|.|+.+. .+.+..+. ..|...|  .   .
T Consensus        84 vDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es-~e~i~eHqe~nR~aA~a~A~~~g  162 (189)
T COG2019          84 VDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLRDSRRDRDVES-VEEIREHQEMNRAAAMAYAILLG  162 (189)
T ss_pred             EeccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhccccccccccc-HHHHHHHHHHHHHHHHHHHHHhC
Confidence            5442      23222 122 23455688999999999998877   2 34455433 34444321 1222222  2   2


Q ss_pred             CcE-EEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          230 ADV-TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       230 AD~-vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                      |.+ +|.|            .+..||+.+.+|...+..
T Consensus       163 atVkIV~n------------~~~~~e~Aa~eiv~~l~~  188 (189)
T COG2019         163 ATVKIVEN------------HEGDPEEAAEEIVELLDR  188 (189)
T ss_pred             CeEEEEeC------------CCCCHHHHHHHHHHHHhc
Confidence            555 4443            367999999999988763

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.99  E-value=1.6e-10  Score=117.99  Aligned_cols=143  Identities=15%  Similarity=0.253  Sum_probs=91.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChH-HHHHhhchhHhHHHHHHHHHHHHc-CCCEEEE
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAA-KAFRESDEKGYQQAETEVLKQLSS-MGRLVVC  169 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~-ei~~~~ge~~fr~~e~~vl~~l~~-~~~~VI~  169 (278)
                      ....|+++|+||+||||+|+.|++.|+|.+++++.+....++ ..+. +.+...++..|+..|.++...++. ..+.++.
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~r-r~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~  292 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYR-RRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICK  292 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhH-hhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            455788999999999999999999999999998888765554 3332 234444566677777776666553 2345566


Q ss_pred             eCCceeechhHHH---------hhh-CC-----cEEEEEc--CHHHHHhh-hcCC---CCC--CChHHHHHHHHHHhhhc
Q 023749          170 AGNGAVQSSANLA---------LLR-HG-----ISLWIDV--PPGMVARM-DHSG---FPE--SEVLPQLFALYKEMRDG  226 (278)
Q Consensus       170 ~g~g~v~~~~~~~---------~L~-~~-----~vV~L~a--~~e~l~~R-~~r~---rp~--~~~~~~l~~~~~er~~~  226 (278)
                      +|+++|++..|..         .++ .+     .+|||++  +...+.+| ..|+   .|.  ++..+.+.+.+++|.+.
T Consensus       293 ~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~~~~~~e~~~~~~~~~~~~~~~~  372 (664)
T PTZ00322        293 TDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEMFPGAPEDFVDRYYEVIEQLEAV  372 (664)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Confidence            6666676653321         222 22     4788776  33444444 2221   111  22346677788899999


Q ss_pred             cccCcEEEe
Q 023749          227 YATADVTVS  235 (278)
Q Consensus       227 Y~~AD~vId  235 (278)
                      |+.++..++
T Consensus       373 Ye~~~~~~d  381 (664)
T PTZ00322        373 YKSLNPVTD  381 (664)
T ss_pred             cccCCcccc
Confidence            987776554

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=98.95  E-value=3.6e-08  Score=87.47  Aligned_cols=66  Identities=21%  Similarity=0.343  Sum_probs=42.0

Q ss_pred             CCcEEEEEcCHHHHHhh-hcCCCCC-----CChHHHHHHHHHHhh-hccc-cCcE-EEecCcccccccccCCCCCCHHHH
Q 023749          186 HGISLWIDVPPGMVARM-DHSGFPE-----SEVLPQLFALYKEMR-DGYA-TADV-TVSLQKVASQLGYDDLDAVTTEDM  256 (278)
Q Consensus       186 ~~~vV~L~a~~e~l~~R-~~r~rp~-----~~~~~~l~~~~~er~-~~Y~-~AD~-vId~~~va~~~~~~Dts~~tpeev  256 (278)
                      ++++|||++|++++.+| .+|+++.     .+.++.+...|+++. +.|. .+++ +||.           +...++|++
T Consensus       143 Pd~~i~l~~~~~~~~~Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~-----------~~~~~~e~i  211 (219)
T cd02030         143 PHLVIYLDVPVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDW-----------TEAGDTEKV  211 (219)
T ss_pred             CCEEEEEeCCHHHHHHHHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeC-----------CChhhHHHH
Confidence            58999999999999999 6677652     123345666676663 2344 3455 4442           123677777


Q ss_pred             HHHHHH
Q 023749          257 TLEVKW  262 (278)
Q Consensus       257 a~~I~~  262 (278)
                      +++|..
T Consensus       212 ~~~I~~  217 (219)
T cd02030         212 VEDIEY  217 (219)
T ss_pred             HHHHHc
Confidence            777643

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PRK13976 thymidylate kinase; Provisional

Probab=98.94  E-value=7.4e-08  Score=85.26  Aligned_cols=75  Identities=16%  Similarity=0.198  Sum_probs=47.2

Q ss_pred             CCcEEEEEcCHHHHHhh-hcCCCCC--CChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCC-CCC---HHHHHH
Q 023749          186 HGISLWIDVPPGMVARM-DHSGFPE--SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLD-AVT---TEDMTL  258 (278)
Q Consensus       186 ~~~vV~L~a~~e~l~~R-~~r~rp~--~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts-~~t---peeva~  258 (278)
                      ++++|||++|+++..+| .+++...  .+..+.+.+.|.+....+...-.+|+.           ++ ..+   +|++.+
T Consensus       125 PDl~i~Ldv~~e~a~~Ri~~~~~e~~~~~~l~~v~~~Y~~l~~~~~~~~~~id~-----------~~~~~~~~~~e~v~~  193 (209)
T PRK13976        125 PDITFVLDIDIELSLSRADKNGYEFMDLEFYDKVRKGFREIVIKNPHRCHVITC-----------IDAKDNIEDINSVHL  193 (209)
T ss_pred             CCEEEEEeCCHHHHHHHhcccchhcccHHHHHHHHHHHHHHHHhCCCCeEEEEC-----------CCCccCcCCHHHHHH
Confidence            68999999999999999 4433221  122334444454443322222335552           11 234   999999


Q ss_pred             HHHHHhhhcCCCC
Q 023749          259 EVKWLYNASISDP  271 (278)
Q Consensus       259 ~I~~~i~~~~~~~  271 (278)
                      +|.+.+.+.++|+
T Consensus       194 ~i~~~i~~~~~~~  206 (209)
T PRK13976        194 EIVKLLHAVTKDK  206 (209)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998887664

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=98.94  E-value=7.4e-09  Score=93.67  Aligned_cols=142  Identities=18%  Similarity=0.221  Sum_probs=85.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHc-CC--CEEEEe
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSS-MG--RLVVCA  170 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~-~~--~~VI~~  170 (278)
                      ..|+++|++|||||+..+.| |.+||.++|+  +-         ++++..     |.++    +..... ..  -.+++.
T Consensus         2 ~lvIVTGlSGAGKsvAl~~l-EDlGyycvDN--LP---------p~Llp~-----~~~~----~~~~~~~~~kvAv~iDi   60 (286)
T COG1660           2 RLVIVTGLSGAGKSVALRVL-EDLGYYCVDN--LP---------PQLLPK-----LADL----MLTLESRITKVAVVIDV   60 (286)
T ss_pred             cEEEEecCCCCcHHHHHHHH-HhcCeeeecC--CC---------HHHHHH-----HHHH----HhhcccCCceEEEEEec
Confidence            46889999999999999999 6699988874  22         122221     1110    000000 01  123333


Q ss_pred             CCceeec--hhHHHhhh-C----CcEEEEEcCHHHHHhh--h-cCCCCCCChHHHHHHHHHHhhhc---cccCcEEEecC
Q 023749          171 GNGAVQS--SANLALLR-H----GISLWIDVPPGMVARM--D-HSGFPESEVLPQLFALYKEMRDG---YATADVTVSLQ  237 (278)
Q Consensus       171 g~g~v~~--~~~~~~L~-~----~~vV~L~a~~e~l~~R--~-~r~rp~~~~~~~l~~~~~er~~~---Y~~AD~vId~~  237 (278)
                      .+.....  ...+..++ .    --++||+|+.+++.+|  + +|..|.......+..+-.||+-+   ...||++||  
T Consensus        61 Rs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~vID--  138 (286)
T COG1660          61 RSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLREIADLVID--  138 (286)
T ss_pred             ccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhhhEee--
Confidence            3221111  12223444 3    2489999999999999  3 45556332111344444555443   336999998  


Q ss_pred             cccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          238 KVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       238 ~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                                |+.+++.|+.+.|..++....
T Consensus       139 ----------Ts~ls~~~Lr~~i~~~f~~~~  159 (286)
T COG1660         139 ----------TSELSVHELRERIRTRFLGKE  159 (286)
T ss_pred             ----------cccCCHHHHHHHHHHHHccCC
Confidence                      899999999999999998643

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=98.93  E-value=1.1e-08  Score=89.47  Aligned_cols=152  Identities=17%  Similarity=0.132  Sum_probs=88.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-CC-hHHHHHhhchh----------------HhH------
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES-AAKAFRESDEK----------------GYQ------  150 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~~-i~ei~~~~ge~----------------~fr------  150 (278)
                      .|.|+|..||||||+++.+- ++|++.+|+|.+.++.... .+ ...+.+.+|.+                .|.      
T Consensus         3 iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r~   81 (225)
T KOG3220|consen    3 IVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKRQ   81 (225)
T ss_pred             EEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHHH
Confidence            57899999999999999995 8999999999998876531 11 11122222221                121      


Q ss_pred             ------------HHHHHHHHHHHcCCCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh--hcCCCCCCChHHH
Q 023749          151 ------------QAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM--DHSGFPESEVLPQ  215 (278)
Q Consensus       151 ------------~~e~~vl~~l~~~~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R--~~r~rp~~~~~~~  215 (278)
                                  ++-.++++.++.....|+-.-  .++.+..+  ++ ...+|.+.||.++..+|  .+.+...++....
T Consensus        82 ~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDi--PLLFE~~~--~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~dAe~R  157 (225)
T KOG3220|consen   82 ALNKITHPAIRKEMFKEILKLLLRGYRVIVLDI--PLLFEAKL--LKICHKTVVVTCDEELQLERLVERDELSEEDAENR  157 (225)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHhcCCeEEEEec--hHHHHHhH--HhheeeEEEEEECcHHHHHHHHHhccccHHHHHHH
Confidence                        111122223334444333211  12223322  23 45678888999999999  3334444444455


Q ss_pred             HHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749          216 LFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN  265 (278)
Q Consensus       216 l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~  265 (278)
                      +.+++.- +...+.||++|||             +-++++..+++...+.
T Consensus       158 l~sQmp~-~~k~~~a~~Vi~N-------------ng~~~~l~~qv~~v~~  193 (225)
T KOG3220|consen  158 LQSQMPL-EKKCELADVVIDN-------------NGSLEDLYEQVEKVLA  193 (225)
T ss_pred             HHhcCCH-HHHHHhhheeecC-------------CCChHHHHHHHHHHHH
Confidence            5555422 1112369999995             5688888888776664

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.91  E-value=1.8e-08  Score=88.81  Aligned_cols=137  Identities=17%  Similarity=0.182  Sum_probs=67.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHh---CCceecCch-HHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEE
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDS-LVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC  169 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD~D~-li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~  169 (278)
                      +.|+|+|+|||||||+|+.||+.|   ++..++... ...-.....+.+ +..+.-.+.|.+...+++..... .-.||+
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslp-i~ke~yres~~ks~~rlldSalk-n~~VIv   79 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLP-ILKEVYRESFLKSVERLLDSALK-NYLVIV   79 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccc-hHHHHHHHHHHHHHHHHHHHHhc-ceEEEE
Confidence            579999999999999999999988   344444322 110000001111 11111112222211122222222 234554


Q ss_pred             eCCceeechhHHHh----hh---CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhh---hccc--cCcEEEe
Q 023749          170 AGNGAVQSSANLAL----LR---HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMR---DGYA--TADVTVS  235 (278)
Q Consensus       170 ~g~g~v~~~~~~~~----L~---~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~---~~Y~--~AD~vId  235 (278)
                      ..-. ....-.+++    ..   .-.+||+.+|+|++.+| ..|+-|..  .+.++++|.+.+   +.+.  .+-++|+
T Consensus        80 DdtN-YyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~ergepip--~Evl~qly~RfEePn~~~rWDspll~id  155 (261)
T COG4088          80 DDTN-YYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPIP--EEVLRQLYDRFEEPNPDRRWDSPLLVID  155 (261)
T ss_pred             eccc-HHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCCCCC--HHHHHHHHHhhcCCCCCccccCceEEEe
Confidence            3211 111111111    11   23699999999999999 45555532  234555554433   3333  4667887

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=98.90  E-value=1.2e-08  Score=84.94  Aligned_cols=101  Identities=17%  Similarity=0.185  Sum_probs=58.2

Q ss_pred             EEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHHHHHHHH-HHHc---CCCEEE
Q 023749           98 LVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVLK-QLSS---MGRLVV  168 (278)
Q Consensus        98 L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~e~~vl~-~l~~---~~~~VI  168 (278)
                      |+|+|||||||+|+.||+++|+.+++.++++++.....+     +.+.+. .|+..-.++-..++. .+..   ...+|+
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~-~g~~vp~~~v~~ll~~~l~~~~~~~g~il   79 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLD-NGELVPDELVIELLKERLEQPPCNRGFIL   79 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHH-TTSS--HHHHHHHHHHHHHSGGTTTEEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHH-hhccchHHHHHHHHHHHHhhhcccceeee
Confidence            689999999999999999999999999999887543111     122221 132222222222222 2222   233344


Q ss_pred             EeCCceeechhHHHhh-------h--CCcEEEEEcCHHHHHhh
Q 023749          169 CAGNGAVQSSANLALL-------R--HGISLWIDVPPGMVARM  202 (278)
Q Consensus       169 ~~g~g~v~~~~~~~~L-------~--~~~vV~L~a~~e~l~~R  202 (278)
                      +   |++.+......+       .  .+.+|+|++|.+++.+|
T Consensus        80 d---GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R  119 (151)
T PF00406_consen   80 D---GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIER  119 (151)
T ss_dssp             E---SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHH
T ss_pred             e---eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhh
Confidence            2   333333222211       1  46899999999999999

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=98.88  E-value=3.6e-09  Score=88.47  Aligned_cols=105  Identities=20%  Similarity=0.304  Sum_probs=59.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHh---CC--ceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEE
Q 023749           95 SVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC  169 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~L---g~--~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~  169 (278)
                      .|+|+|.|||||||+++.|++.+   |+  .+++.|.+.....+...   +......+.++.+.. ....+...+..||.
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~---~~~~~~~~~~~~~~~-~a~~l~~~G~~VIi   76 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLG---FSREDREENIRRIAE-VAKLLADAGLIVIA   76 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccC---CCcchHHHHHHHHHH-HHHHHHhCCCEEEE
Confidence            47899999999999999999998   54  45777776654332111   001112233333221 22334344444544


Q ss_pred             eCCceeechhHHHhhh------CCcEEEEEcCHHHHHhhhcC
Q 023749          170 AGNGAVQSSANLALLR------HGISLWIDVPPGMVARMDHS  205 (278)
Q Consensus       170 ~g~g~v~~~~~~~~L~------~~~vV~L~a~~e~l~~R~~r  205 (278)
                      ... . .....+..++      .-.+|||++|.+++.+|+.+
T Consensus        77 d~~-~-~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~  116 (149)
T cd02027          77 AFI-S-PYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK  116 (149)
T ss_pred             ccC-C-CCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence            322 1 1222232222      12579999999999999433

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>COG0645 Predicted kinase [General function prediction only]

Probab=98.85  E-value=6.3e-08  Score=82.66  Aligned_cols=131  Identities=17%  Similarity=0.103  Sum_probs=77.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHH-----HHHh-hchhHhHHHHHHHHHHHHcCCCEE
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAK-----AFRE-SDEKGYQQAETEVLKQLSSMGRLV  167 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~e-----i~~~-~ge~~fr~~e~~vl~~l~~~~~~V  167 (278)
                      +.+++.|.||+||||+|+.|++.+|+..+.+|.+.+...| .+...     ++.. .....|..+......-+....+.|
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g-~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~VV   80 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFG-VPEETRGPAGLYSPAATAAVYDELLGRAELLLSSGHSVV   80 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcC-CcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence            5678899999999999999999999999999999888777 33211     0000 011122222222212222334333


Q ss_pred             EEeCCceeechhHHHhh----h-C---CcEEEEEcCHHHHHhh-hcCCC-CCCChHHHHHHHHHHhhhccc
Q 023749          168 VCAGNGAVQSSANLALL----R-H---GISLWIDVPPGMVARM-DHSGF-PESEVLPQLFALYKEMRDGYA  228 (278)
Q Consensus       168 I~~g~g~v~~~~~~~~L----~-~---~~vV~L~a~~e~l~~R-~~r~r-p~~~~~~~l~~~~~er~~~Y~  228 (278)
                      ++.   ....+..++..    + .   -+.|++.+|.+++.+| ..|.- +.+.....++.+..+.+++..
T Consensus        81 lDa---~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~sDA~~~il~~q~~~~~~~~~  148 (170)
T COG0645          81 LDA---TFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDASDATFDILRVQLAEDEPWTE  148 (170)
T ss_pred             Eec---ccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCcccchHHHHHHHHhhhCCccc
Confidence            332   23333333322    2 2   2569999999999999 44432 233334566667677666554

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=98.85  E-value=9.2e-08  Score=83.97  Aligned_cols=39  Identities=21%  Similarity=0.189  Sum_probs=32.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE  130 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~  130 (278)
                      .++.|+++|+|||||||+|+.|++++|+.++...+++++
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~   40 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLRE   40 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHH
Confidence            467899999999999999999999999987655555444

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.84  E-value=4e-08  Score=85.42  Aligned_cols=27  Identities=30%  Similarity=0.267  Sum_probs=25.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      +|..|+|+|++||||||+++.|+..+.
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            688999999999999999999999875

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=98.83  E-value=2.1e-09  Score=111.62  Aligned_cols=77  Identities=22%  Similarity=0.170  Sum_probs=67.5

Q ss_pred             cccCCCcceecccccCCccccccccc-----------cCCcc----HHHHHHHHhhhh------ccCCcEEEEEccCCCc
Q 023749           47 IISRKPRITTRSIADDTTSNTVTKVA-----------AEDPS----FAVKKKAADIST------ELKGTSVFLVGMNNAI  105 (278)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~----~~~~~~~~~~~~------~~~~~~I~L~G~~GSG  105 (278)
                      ...||+|.++|||.+|..++||++..           .||++    ..+|+++.++..      ...|..|+|+|+||+|
T Consensus       282 ~~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~G  361 (784)
T PRK10787        282 SPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVG  361 (784)
T ss_pred             CCCCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCC
Confidence            56788999999999999999998887           56664    789999998773      3578899999999999


Q ss_pred             HHHHHHHHHHHhCCceec
Q 023749          106 KTHLGKFLADALRYYYFD  123 (278)
Q Consensus       106 KSTlAk~LAe~Lg~~~iD  123 (278)
                      |||+++.+|+.++.+++.
T Consensus       362 KTtl~~~ia~~l~~~~~~  379 (784)
T PRK10787        362 KTSLGQSIAKATGRKYVR  379 (784)
T ss_pred             HHHHHHHHHHHhCCCEEE
Confidence            999999999999988754

>PLN02165 adenylate isopentenyltransferase

Probab=98.83  E-value=1.3e-08  Score=95.75  Aligned_cols=132  Identities=17%  Similarity=0.285  Sum_probs=83.3

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH--------------HHHHhCCCC---hHHHHHhhch---hH
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--------------VFEAAGGES---AAKAFRESDE---KG  148 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l--------------i~~~~g~~~---i~ei~~~~ge---~~  148 (278)
                      ..-++.+|+|+|++||||||+|..||+.+++.++++|.+              .++..| ..   +..+....+.   ..
T Consensus        39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~g-v~Hhli~~~~~~~~~~sv~~  117 (334)
T PLN02165         39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRG-VPHHLLGELNPDDGELTASE  117 (334)
T ss_pred             cCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcC-CChhhhheeccccceeeHHH
Confidence            345688999999999999999999999999999999987              344444 22   1111222222   45


Q ss_pred             hHHHHHHHHHHHHcCCCEEEEeCCceeec---------hhH---------HH-hhh-CCcEEEEEcCHHHHHhh-hcC--
Q 023749          149 YQQAETEVLKQLSSMGRLVVCAGNGAVQS---------SAN---------LA-LLR-HGISLWIDVPPGMVARM-DHS--  205 (278)
Q Consensus       149 fr~~e~~vl~~l~~~~~~VI~~g~g~v~~---------~~~---------~~-~L~-~~~vV~L~a~~e~l~~R-~~r--  205 (278)
                      |+.....++.++...+...|.+||+..+-         +..         .. .++ ..+++||+.+.+++.+| ++|  
T Consensus       118 F~~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~Rvd  197 (334)
T PLN02165        118 FRSLASLSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSKRVD  197 (334)
T ss_pred             HHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHHHHH
Confidence            66666677777776666777777643211         100         00 022 23578999999999999 544  


Q ss_pred             CCCCCChHHHHHHHHH
Q 023749          206 GFPESEVLPQLFALYK  221 (278)
Q Consensus       206 ~rp~~~~~~~l~~~~~  221 (278)
                      ..-.....++++.+++
T Consensus       198 ~Ml~~GlldEv~~L~~  213 (334)
T PLN02165        198 EMMDSGMFEELAEFYD  213 (334)
T ss_pred             HHHHCCHHHHHHHHHH
Confidence            1112223455555544

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.82  E-value=4.7e-08  Score=84.92  Aligned_cols=64  Identities=14%  Similarity=0.154  Sum_probs=42.1

Q ss_pred             cEEEEEcC-HHHHHhh-hcCCC-CCCChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749          188 ISLWIDVP-PGMVARM-DHSGF-PESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       188 ~vV~L~a~-~e~l~~R-~~r~r-p~~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i  264 (278)
                      ++|||..| .+++.+| ..|+. +..+....+.++..+.. ....+|.+|.|             + +.++...++.+++
T Consensus       118 ~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~-~~~~~D~vI~N-------------~-dle~a~~ql~~ii  182 (186)
T PRK14737        118 VTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIELD-EANEFDYKIIN-------------D-DLEDAIADLEAII  182 (186)
T ss_pred             EEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-hhccCCEEEEC-------------c-CHHHHHHHHHHHH
Confidence            68999985 6888888 55543 22334445555433322 12358999984             2 7899999999888


Q ss_pred             hh
Q 023749          265 NA  266 (278)
Q Consensus       265 ~~  266 (278)
                      .+
T Consensus       183 ~~  184 (186)
T PRK14737        183 CG  184 (186)
T ss_pred             hc
Confidence            64

>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]

Probab=98.81  E-value=1.1e-08  Score=93.47  Aligned_cols=55  Identities=24%  Similarity=0.274  Sum_probs=39.6

Q ss_pred             HHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCcee---cCchHHHHHhC
Q 023749           78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF---DSDSLVFEAAG  133 (278)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i---D~D~li~~~~g  133 (278)
                      ..+|+|+.-=.. =.-++|++.|+.|||||++||.||++||+.++   ++|.+....+|
T Consensus        57 ~~l~Dktskrf~-enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg  114 (393)
T KOG3877|consen   57 DGLKDKTSKRFH-ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYG  114 (393)
T ss_pred             hhhcchhhhhhc-ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccC
Confidence            445454433222 24678999999999999999999999997664   67776655444

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.80  E-value=7.2e-09  Score=89.95  Aligned_cols=24  Identities=33%  Similarity=0.304  Sum_probs=22.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhC
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      +|.|+|++||||||+|+.|++.|+
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999999997

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=98.79  E-value=2e-08  Score=86.45  Aligned_cols=134  Identities=23%  Similarity=0.365  Sum_probs=71.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChH-HHHHhhc--------------------------hh
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAA-KAFRESD--------------------------EK  147 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~-ei~~~~g--------------------------e~  147 (278)
                      +|.|.+..|||++++|+.||++||++++|. +++.+......+. +.+....                          ..
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD   79 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence            588999999999999999999999999997 5555433210000 0111100                          11


Q ss_pred             HhHHHHHHHHHHHHcCCCEEEEeCCceeechhHHHhhh---CCcEEEEEcCHHHHHhh--hcCCCCCCChHHHHHHHHHH
Q 023749          148 GYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLR---HGISLWIDVPPGMVARM--DHSGFPESEVLPQLFALYKE  222 (278)
Q Consensus       148 ~fr~~e~~vl~~l~~~~~~VI~~g~g~v~~~~~~~~L~---~~~vV~L~a~~e~l~~R--~~r~rp~~~~~~~l~~~~~e  222 (278)
                      .+.....+++.+++..+++||. |-+     .++ .|+   +.+-|||.+|.+.+.+|  ++.+...++....+.+.-.+
T Consensus        80 ~~~~~~~~~i~~la~~~~~Vi~-GR~-----a~~-il~~~~~~l~V~i~A~~~~Rv~ri~~~~~~s~~~A~~~i~~~D~~  152 (179)
T PF13189_consen   80 KIFRAQSEIIRELAAKGNCVIV-GRC-----ANY-ILRDIPNVLHVFIYAPLEFRVERIMEREGISEEEAEKLIKKEDKR  152 (179)
T ss_dssp             HHHHHHHHHHHHHHH---EEEE-STT-----HHH-HTTT-TTEEEEEEEE-HHHHHHHHHHHHT--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCEEEE-ecC-----Hhh-hhCCCCCeEEEEEECCHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            2223344677788777777775 322     122 344   34789999999999999  33344433344445444444


Q ss_pred             hhhccc-----------cCcEEEec
Q 023749          223 MRDGYA-----------TADVTVSL  236 (278)
Q Consensus       223 r~~~Y~-----------~AD~vId~  236 (278)
                      |..+|+           .-|++||+
T Consensus       153 R~~~~~~~~~~~~~d~~~YDLvint  177 (179)
T PF13189_consen  153 RRAYYKYYTGIDWGDPSNYDLVINT  177 (179)
T ss_dssp             HHHHHHHH-SS-TTBGGG-SEEEEE
T ss_pred             HHHHHHHHhCCCCCCchhceEEEeC
Confidence            443332           36788874

>PTZ00301 uridine kinase; Provisional

Probab=98.77  E-value=1.2e-07  Score=84.06  Aligned_cols=37  Identities=16%  Similarity=0.042  Sum_probs=29.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhC-------CceecCchHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLVF  129 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg-------~~~iD~D~li~  129 (278)
                      -..|.|.|+|||||||+|+.|++.+.       ...+..|.+..
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~   46 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR   46 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence            36789999999999999999988772       23566777653

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=98.77  E-value=1.8e-07  Score=82.91  Aligned_cols=71  Identities=18%  Similarity=0.320  Sum_probs=44.5

Q ss_pred             CCcEEEEEcCHHHHHhh-hcCCCC----CCCh---HHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHH
Q 023749          186 HGISLWIDVPPGMVARM-DHSGFP----ESEV---LPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMT  257 (278)
Q Consensus       186 ~~~vV~L~a~~e~l~~R-~~r~rp----~~~~---~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva  257 (278)
                      +++++||++|+++..+| .+|+..    +...   .+.+++.|.+....+...-++||             .+.++|++.
T Consensus       128 PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~~~~f~~kvr~~Y~~la~~~~~r~~vId-------------a~~~~e~v~  194 (208)
T COG0125         128 PDLTLYLDVPPEVALERIRKRGELRDRFEKEDDEFLEKVREGYLELAAKFPERIIVID-------------ASRPLEEVH  194 (208)
T ss_pred             CCEEEEEeCCHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHhhCCCeEEEEE-------------CCCCHHHHH
Confidence            58999999999999999 444322    1111   22223333333222222235677             457899999


Q ss_pred             HHHHHHhhhcCC
Q 023749          258 LEVKWLYNASIS  269 (278)
Q Consensus       258 ~~I~~~i~~~~~  269 (278)
                      ++|.+.+...+.
T Consensus       195 ~~i~~~l~~~l~  206 (208)
T COG0125         195 EEILKILKERLG  206 (208)
T ss_pred             HHHHHHHHHhhc
Confidence            999999987764

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.76  E-value=5.5e-08  Score=82.70  Aligned_cols=28  Identities=21%  Similarity=0.175  Sum_probs=24.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      |+.|+|+|++||||||+++.|++.++..
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~   28 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDPNL   28 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCccc
Confidence            6789999999999999999999876543

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK12338 hypothetical protein; Provisional

Probab=98.74  E-value=4.4e-07  Score=85.08  Aligned_cols=39  Identities=15%  Similarity=0.105  Sum_probs=32.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCcee-cCchHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-DSDSLVFE  130 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i-D~D~li~~  130 (278)
                      .+..|+++|+|||||||+|+.||+++|+.++ ++|.+.+.
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~   42 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREV   42 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHH
Confidence            4678999999999999999999999999988 55544443

>PRK07933 thymidylate kinase; Validated

Probab=98.73  E-value=1.7e-07  Score=83.00  Aligned_cols=25  Identities=28%  Similarity=0.296  Sum_probs=23.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      +.|+|.|+.||||||+++.|++.|.
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~   25 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALE   25 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999999984

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.73  E-value=7.6e-08  Score=85.51  Aligned_cols=36  Identities=19%  Similarity=0.116  Sum_probs=31.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCc---eecCchHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYY---YFDSDSLVF  129 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~---~iD~D~li~  129 (278)
                      ..|.|.|.+||||||+|+.|++.++-.   .++.|++..
T Consensus         9 iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk   47 (218)
T COG0572           9 IIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYK   47 (218)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccccc
Confidence            578889999999999999999999955   677788765

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=98.70  E-value=3.1e-07  Score=79.10  Aligned_cols=29  Identities=31%  Similarity=0.288  Sum_probs=25.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      .|+|.|++||||||+++.|++.+|+.++.
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~   29 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGYEVVP   29 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCcccc
Confidence            48999999999999999999998886653

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.70  E-value=1.9e-07  Score=83.28  Aligned_cols=142  Identities=20%  Similarity=0.254  Sum_probs=73.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCc-----e-ecCchHHH-----HHhCCCChHHHHHhhchhHhHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYY-----Y-FDSDSLVF-----EAAGGESAAKAFRESDEKGYQQAETEVLKQL  160 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~-----~-iD~D~li~-----~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l  160 (278)
                      .+..|.|+|++||||||+++.|+..+...     + +..|++..     ...|...............+.    +++..+
T Consensus        32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~----~~l~~l  107 (229)
T PRK09270         32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLA----ALLRRL  107 (229)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHH----HHHHHH
Confidence            46789999999999999999999887431     2 55554321     111100000000000001111    112221


Q ss_pred             H--------------------------cCCCEEEEeCCceeechhHHHhhh--CCcEEEEEcCHHHHHhh-hcC----CC
Q 023749          161 S--------------------------SMGRLVVCAGNGAVQSSANLALLR--HGISLWIDVPPGMVARM-DHS----GF  207 (278)
Q Consensus       161 ~--------------------------~~~~~VI~~g~g~v~~~~~~~~L~--~~~vV~L~a~~e~l~~R-~~r----~r  207 (278)
                      .                          .....||..|.........+..+.  .+.+|||++|.+++.+| ..|    ++
T Consensus       108 ~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~~~~g~  187 (229)
T PRK09270        108 RAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARKLAGGL  187 (229)
T ss_pred             HcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhcCC
Confidence            1                          023345555655554445555554  67999999999999999 333    44


Q ss_pred             CCCChHHHHHH-HHHH---hhhccccCcEEEecC
Q 023749          208 PESEVLPQLFA-LYKE---MRDGYATADVTVSLQ  237 (278)
Q Consensus       208 p~~~~~~~l~~-~~~e---r~~~Y~~AD~vId~~  237 (278)
                      ..++....+.. ++..   ..+.-..||++|+++
T Consensus       188 s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~  221 (229)
T PRK09270        188 SPEAAEAFVLRNDGPNARLVLETSRPADLVLEMT  221 (229)
T ss_pred             CHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEec
Confidence            33333333321 1111   111122599999964

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=98.69  E-value=3.2e-07  Score=84.28  Aligned_cols=150  Identities=16%  Similarity=0.158  Sum_probs=69.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHh---CC--ceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEE
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV  168 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~L---g~--~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI  168 (278)
                      ..|+|+|.|||||||+|+.|++.+   ++  .+++.|.+.   .. ...  +.....|...|..-...+++..+....||
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~---~~-~~~--y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI   75 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG---ID-RND--YADSKKEKEARGSLKSAVERALSKDTIVI   75 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----T-TSS--S--GGGHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc---cc-hhh--hhchhhhHHHHHHHHHHHHHhhccCeEEE
Confidence            479999999999999999999975   33  345544443   11 111  11222233333322222334444455666


Q ss_pred             EeCCceeechhHHHhh---h-C---CcEEEEEcCHHHHHhh-hcCCCC---CCChHHHHHHHHHHhhhc--cccCcEEEe
Q 023749          169 CAGNGAVQSSANLALL---R-H---GISLWIDVPPGMVARM-DHSGFP---ESEVLPQLFALYKEMRDG--YATADVTVS  235 (278)
Q Consensus       169 ~~g~g~v~~~~~~~~L---~-~---~~vV~L~a~~e~l~~R-~~r~rp---~~~~~~~l~~~~~er~~~--Y~~AD~vId  235 (278)
                      ..+. ..+..-.+++.   + .   ..+||+++|.|.+.+| ..|+.+   .++..+.|...|++-.+.  ++..-++|+
T Consensus        76 ~Dd~-nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P~~~nrWD~plf~i~  154 (270)
T PF08433_consen   76 LDDN-NYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEEPDPKNRWDSPLFTID  154 (270)
T ss_dssp             E-S----SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---TTSS-GGGS-SEEEE
T ss_pred             EeCC-chHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcCCCCCCCccCCeEEEe
Confidence            5432 23322222222   2 2   3689999999999999 555433   223344444455543332  224667887


Q ss_pred             cCcccccccccCCCCCCHHHHHHHH
Q 023749          236 LQKVASQLGYDDLDAVTTEDMTLEV  260 (278)
Q Consensus       236 ~~~va~~~~~~Dts~~tpeeva~~I  260 (278)
                      .          +.+....+++.+.|
T Consensus       155 ~----------~~~~~~~~~I~~~l  169 (270)
T PF08433_consen  155 S----------SDEELPLEEIWNAL  169 (270)
T ss_dssp             -----------TTS---HHHHHHHH
T ss_pred             c----------CCCCCCHHHHHHHH
Confidence            2          12445567777776

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK13974 thymidylate kinase; Provisional

Probab=98.67  E-value=2.3e-06  Score=75.56  Aligned_cols=27  Identities=30%  Similarity=0.309  Sum_probs=25.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      .|..|+|.|++||||||+++.|++.|.
T Consensus         2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~   28 (212)
T PRK13974          2 KGKFIVLEGIDGCGKTTQIDHLSKWLP   28 (212)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999999884

>TIGR00235 udk uridine kinase

Probab=98.67  E-value=4.4e-07  Score=79.51  Aligned_cols=37  Identities=19%  Similarity=0.206  Sum_probs=31.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC---CceecCchHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLV  128 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg---~~~iD~D~li  128 (278)
                      +|..|.|+|++||||||+++.|+..++   +.++..|...
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~   44 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY   44 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence            578899999999999999999998875   5567777754

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.65  E-value=4.4e-08  Score=77.79  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=21.6

Q ss_pred             EEEEccCCCcHHHHHHHHHHHhC
Q 023749           96 VFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        96 I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      |+|.|++||||||+|+.|++.++
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~   23 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLG   23 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CEEECCCCCCHHHHHHHHHHHHC
Confidence            78999999999999999999983

...

>PRK07667 uridine kinase; Provisional

Probab=98.62  E-value=3.9e-07  Score=79.30  Aligned_cols=38  Identities=18%  Similarity=0.270  Sum_probs=31.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFE  130 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li~~  130 (278)
                      ..+|.|.|++||||||+|+.|++.++     ..+++.|++...
T Consensus        17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~   59 (193)
T PRK07667         17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE   59 (193)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence            34888999999999999999999873     348889887643

>PRK14738 gmk guanylate kinase; Provisional

Probab=98.58  E-value=4.8e-07  Score=79.57  Aligned_cols=28  Identities=14%  Similarity=0.044  Sum_probs=24.2

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +--.++.|+|+|++||||||+++.|.+.
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            3347889999999999999999999764

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.56  E-value=4.3e-07  Score=90.46  Aligned_cols=94  Identities=22%  Similarity=0.238  Sum_probs=62.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG  171 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g  171 (278)
                      .+..|+++|+|||||||+|+.+++.+|+.+++.|.+     + .             +..+...+...+......||+..
T Consensus       368 ~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l-----g-~-------------~~~~~~~a~~~L~~G~sVVIDaT  428 (526)
T TIGR01663       368 PCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL-----G-S-------------TQNCLTACERALDQGKRCAIDNT  428 (526)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH-----H-H-------------HHHHHHHHHHHHhCCCcEEEECC
Confidence            577899999999999999999999999999999875     1 0             11111223334445555666533


Q ss_pred             CceeechhHHH---hh-h-CC---cEEEEEcCHHHHHhh-hcCCC
Q 023749          172 NGAVQSSANLA---LL-R-HG---ISLWIDVPPGMVARM-DHSGF  207 (278)
Q Consensus       172 ~g~v~~~~~~~---~L-~-~~---~vV~L~a~~e~l~~R-~~r~r  207 (278)
                      .   .++..+.   .+ + .+   ..||+++|.+++.+| ..|.+
T Consensus       429 n---~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~  470 (526)
T TIGR01663       429 N---PDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL  470 (526)
T ss_pred             C---CCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence            2   2232222   22 2 33   479999999999999 55543

Note that the EC number for the kinase function is: 2.7.1.78

>smart00072 GuKc Guanylate kinase homologues

Probab=98.56  E-value=1.1e-06  Score=75.64  Aligned_cols=25  Identities=20%  Similarity=0.142  Sum_probs=23.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ++.|+|+||+||||+|+++.|.+..
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcC
Confidence            6789999999999999999998875

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>TIGR00763 lon ATP-dependent protease La

Probab=98.56  E-value=4e-08  Score=102.16  Aligned_cols=77  Identities=29%  Similarity=0.222  Sum_probs=63.6

Q ss_pred             cccCCCcceecccccCCccccccccc-----------cCCcc----HHHHHHHHhhh------hccCCcEEEEEccCCCc
Q 023749           47 IISRKPRITTRSIADDTTSNTVTKVA-----------AEDPS----FAVKKKAADIS------TELKGTSVFLVGMNNAI  105 (278)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~----~~~~~~~~~~~------~~~~~~~I~L~G~~GSG  105 (278)
                      ..+|++|.++|+|.+|.+++||.+..           .+|.+    ..+|+++.++.      +...+..++|.|+||+|
T Consensus       280 ~~~~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~G  359 (775)
T TIGR00763       280 EPSSSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVG  359 (775)
T ss_pred             CCCCchHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCC
Confidence            56789999999999999999998766           23332    56788877754      34567889999999999


Q ss_pred             HHHHHHHHHHHhCCceec
Q 023749          106 KTHLGKFLADALRYYYFD  123 (278)
Q Consensus       106 KSTlAk~LAe~Lg~~~iD  123 (278)
                      ||++|+.||+.++.+++.
T Consensus       360 KT~lAk~iA~~l~~~~~~  377 (775)
T TIGR00763       360 KTSLGKSIAKALNRKFVR  377 (775)
T ss_pred             HHHHHHHHHHHhcCCeEE
Confidence            999999999999988764

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK15453 phosphoribulokinase; Provisional

Probab=98.55  E-value=5.9e-07  Score=82.90  Aligned_cols=38  Identities=18%  Similarity=0.180  Sum_probs=32.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF  129 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li~  129 (278)
                      ++..|.|+|.|||||||+++.|++.++     ..+++.|.+.+
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            467899999999999999999998774     55788888763

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.54  E-value=2.4e-07  Score=79.61  Aligned_cols=27  Identities=30%  Similarity=0.362  Sum_probs=24.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      +++.|+|+||+||||+|+++.|.+.+.
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~   27 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEFP   27 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcc
Confidence            478999999999999999999998774

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.52  E-value=2.8e-07  Score=84.79  Aligned_cols=34  Identities=12%  Similarity=-0.008  Sum_probs=28.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHh---CCceecCchHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLV  128 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD~D~li  128 (278)
                      .|.|+|++||||||+++.|+..+   +..+++.|++.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~   37 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH   37 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence            47899999999999999999877   45678888764

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.51  E-value=3.7e-07  Score=79.58  Aligned_cols=35  Identities=29%  Similarity=0.315  Sum_probs=31.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHh-CCceecCchHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVF  129 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~L-g~~~iD~D~li~  129 (278)
                      +|.|.|.+||||||+|+.|++.+ ++.+++.|++..
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~   36 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFK   36 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccC
Confidence            47899999999999999999998 689999998864

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PLN02348 phosphoribulokinase

Probab=98.51  E-value=2.7e-07  Score=88.57  Aligned_cols=27  Identities=11%  Similarity=0.030  Sum_probs=24.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      .+..|.|.|.+||||||+++.|++.||
T Consensus        48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         48 GTVVIGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            356788999999999999999999996

>PRK07429 phosphoribulokinase; Provisional

Probab=98.45  E-value=1.6e-06  Score=81.81  Aligned_cols=37  Identities=22%  Similarity=0.094  Sum_probs=31.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC---CceecCchHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLV  128 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg---~~~iD~D~li  128 (278)
                      ++..|.|+|++||||||+++.|++.++   ...++.|++.
T Consensus         7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~   46 (327)
T PRK07429          7 RPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH   46 (327)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence            345889999999999999999999987   5567788764

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.43  E-value=3.1e-06  Score=73.50  Aligned_cols=29  Identities=28%  Similarity=0.252  Sum_probs=25.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      +|+.|+|+||+|+||||+.+.|-+..++.
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~   31 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDKLR   31 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcCeE
Confidence            68999999999999999999998877544

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.41  E-value=2e-06  Score=78.98  Aligned_cols=35  Identities=14%  Similarity=0.125  Sum_probs=29.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF  129 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li~  129 (278)
                      .|.++|.+||||||+++.|++.++     ..+++.|.+..
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            488999999999999999998774     45788888765

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=98.41  E-value=8.2e-06  Score=69.55  Aligned_cols=157  Identities=18%  Similarity=0.158  Sum_probs=88.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCc----eec------CchHHHHHhCCCChHHHHHhhchhHhH----------H
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYY----YFD------SDSLVFEAAGGESAAKAFRESDEKGYQ----------Q  151 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~----~iD------~D~li~~~~g~~~i~ei~~~~ge~~fr----------~  151 (278)
                      +|+.|+++||+|+||-|+-..+...+.-.    |+.      +|.--|.... .+-.++....++..|.          -
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~a-vs~~eF~~~a~~g~FAlsWqAhGL~Yg   82 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDA-LSEAEFNTRAGQGAFALSWQAHGLSYG   82 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccc-cCHHHHHHHhhcCceeEEehhcCcccc
Confidence            68999999999999999999888877432    221      1110000000 1223333333333331          0


Q ss_pred             HHHHHHHHHHcCCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccc--
Q 023749          152 AETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYA--  228 (278)
Q Consensus       152 ~e~~vl~~l~~~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~--  228 (278)
                      +..++-..+ ..+..||..|...++ +..+.....-++|.|.++++++.+| ..|||..   .+++.+.. .|...|.  
T Consensus        83 ip~eId~wl-~~G~vvl~NgSRa~L-p~arrry~~Llvv~ita~p~VLaqRL~~RGREs---~eeI~aRL-~R~a~~~~~  156 (192)
T COG3709          83 IPAEIDLWL-AAGDVVLVNGSRAVL-PQARRRYPQLLVVCITASPEVLAQRLAERGRES---REEILARL-ARAARYTAG  156 (192)
T ss_pred             CchhHHHHH-hCCCEEEEeccHhhh-HHHHHhhhcceeEEEecCHHHHHHHHHHhccCC---HHHHHHHH-HhhcccccC
Confidence            111122223 245567766654444 2222222234689999999999999 8888753   34554443 3445555  


Q ss_pred             cCcE-EEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          229 TADV-TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       229 ~AD~-vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                      ..|+ +|||             ...+|+..+..+..+.+..
T Consensus       157 ~~dv~~idN-------------sG~l~~ag~~ll~~l~~~~  184 (192)
T COG3709         157 PGDVTTIDN-------------SGELEDAGERLLALLHQDS  184 (192)
T ss_pred             CCCeEEEcC-------------CCcHHHHHHHHHHHHHhhc
Confidence            3554 6664             3477888888888876444

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.38  E-value=6.5e-06  Score=80.69  Aligned_cols=40  Identities=20%  Similarity=0.152  Sum_probs=34.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCc-eecCchHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYY-YFDSDSLVFEA  131 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~-~iD~D~li~~~  131 (278)
                      .+..|+++|++|+||||+|..||+++|+. ++++|.+.+.+
T Consensus       254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~l  294 (475)
T PRK12337        254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVL  294 (475)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHH
Confidence            47889999999999999999999999998 66888876543

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=98.38  E-value=6.3e-06  Score=70.62  Aligned_cols=21  Identities=33%  Similarity=0.487  Sum_probs=19.4

Q ss_pred             EEccCCCcHHHHHHHHHHHhC
Q 023749           98 LVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        98 L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      |.|+.||||||+++.|+++|.
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~   21 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALK   21 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHH
Confidence            579999999999999999884

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.34  E-value=1e-06  Score=75.94  Aligned_cols=35  Identities=23%  Similarity=0.177  Sum_probs=30.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHh-----CCceecCchHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVF  129 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~L-----g~~~iD~D~li~  129 (278)
                      .|.|.|.+||||||+|+.|++.+     +..+++.|++..
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~   40 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV   40 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence            47899999999999999999987     346788888875

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=98.34  E-value=8.8e-06  Score=69.17  Aligned_cols=170  Identities=15%  Similarity=0.106  Sum_probs=92.3

Q ss_pred             HHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCce--ecCchHHHHHhCC-CChHH------HHHhhchhHh
Q 023749           79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYY--FDSDSLVFEAAGG-ESAAK------AFRESDEKGY  149 (278)
Q Consensus        79 ~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~--iD~D~li~~~~g~-~~i~e------i~~~~ge~~f  149 (278)
                      -+..+-.+-++..+|+.|+|-|.+.+|||++|..+.+-..-|+  +-.|.+++..... .....      ....+|++++
T Consensus         9 r~~~~~~~~ag~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v   88 (205)
T COG3896           9 RMRYRLAAMAGMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWV   88 (205)
T ss_pred             HHHHHHHHHcCCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceee
Confidence            3455667778999999999999999999999999987666554  4456655442110 00000      0112233222


Q ss_pred             H-----------HHHHHHHHHHHcCCCEEEEeCCceeec----hhHHHhhh--CCcEEEEEcCHHHHHhhhcCCCCCCCh
Q 023749          150 Q-----------QAETEVLKQLSSMGRLVVCAGNGAVQS----SANLALLR--HGISLWIDVPPGMVARMDHSGFPESEV  212 (278)
Q Consensus       150 r-----------~~e~~vl~~l~~~~~~VI~~g~g~v~~----~~~~~~L~--~~~vV~L~a~~e~l~~R~~r~rp~~~~  212 (278)
                      .           .-....+...+..++.+|...  +...    .+....|.  .-.+|=+.||.|+.++|+.| ++....
T Consensus        89 ~v~~gpi~e~~~~~~r~ai~a~ad~G~~~i~Dd--v~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~r-r~dR~p  165 (205)
T COG3896          89 TVHPGPILELAMHSRRRAIRAYADNGMNVIADD--VIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELR-RGDRHP  165 (205)
T ss_pred             EeechhHHHHHHHHHHHHHHHHhccCcceeehh--cccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhh-cCCcCc
Confidence            1           011223444444555555432  1111    12222333  22467789999999999322 221111


Q ss_pred             HHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749          213 LPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN  265 (278)
Q Consensus       213 ~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~  265 (278)
                       ...+-.+++ -..-...|+.+|            |+..||.|++.+|-+.++
T Consensus       166 -G~~rg~~r~-vHa~~~YDlevD------------TS~~tp~EcAr~i~~r~q  204 (205)
T COG3896         166 -GWNRGSARA-VHADAEYDLEVD------------TSATTPHECAREIHERYQ  204 (205)
T ss_pred             -chhhhhHHH-hcCCcceeeeec------------ccCCCHHHHHHHHHHHhc
Confidence             011111111 110012355554            899999999999987764

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.33  E-value=1.8e-05  Score=73.68  Aligned_cols=44  Identities=16%  Similarity=0.122  Sum_probs=36.1

Q ss_pred             hhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCc-eecCchHHH
Q 023749           86 DISTELKGTSVFLVGMNNAIKTHLGKFLADALRYY-YFDSDSLVF  129 (278)
Q Consensus        86 ~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~-~iD~D~li~  129 (278)
                      .|...=.+..|++.|++||||||+|..||++||++ ++.+|.+.+
T Consensus        85 ~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re  129 (301)
T PRK04220         85 RIRKSKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIRE  129 (301)
T ss_pred             HHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHH
Confidence            34443357889999999999999999999999998 678887763

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=98.32  E-value=1.4e-05  Score=72.42  Aligned_cols=41  Identities=17%  Similarity=0.124  Sum_probs=32.3

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHhCCce-ecCchHHH
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYY-FDSDSLVF  129 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~-iD~D~li~  129 (278)
                      +...+..|+|-|.||+||||+|..||.+||+.. +.+|.+.+
T Consensus        85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IRE  126 (299)
T COG2074          85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIRE  126 (299)
T ss_pred             ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHH
Confidence            444466677778999999999999999999986 56666543

>COG4639 Predicted kinase [General function prediction only]

Probab=98.31  E-value=1.4e-05  Score=67.71  Aligned_cols=108  Identities=18%  Similarity=0.102  Sum_probs=63.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCCh-HHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESA-AKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG  171 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i-~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g  171 (278)
                      ...++|+|.+||||||+++..  .+..+.++.|++.... | ... .+......+..+..+...+-..+....-.||.+.
T Consensus         2 ~~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~l-g-~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidAt   77 (168)
T COG4639           2 RILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLL-G-VSASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDAT   77 (168)
T ss_pred             ceEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHh-h-hchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEcc
Confidence            457899999999999999975  3578888888876543 2 111 1111111233444444433334444444556432


Q ss_pred             CceeechhHHHhh---h--C---CcEEEEEcCHHHHHhh-hcCCC
Q 023749          172 NGAVQSSANLALL---R--H---GISLWIDVPPGMVARM-DHSGF  207 (278)
Q Consensus       172 ~g~v~~~~~~~~L---~--~---~~vV~L~a~~e~l~~R-~~r~r  207 (278)
                         -..++++..+   .  .   ...||++.|.+.|.+| +.+.|
T Consensus        78 ---n~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~R  119 (168)
T COG4639          78 ---NLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRER  119 (168)
T ss_pred             ---cCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccch
Confidence               1234444322   1  2   3579999999999999 44444

>PRK05439 pantothenate kinase; Provisional

Probab=98.27  E-value=8.9e-06  Score=76.23  Aligned_cols=36  Identities=14%  Similarity=0.137  Sum_probs=29.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhC-------CceecCchHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV  128 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg-------~~~iD~D~li  128 (278)
                      +.+|.|.|++||||||+|+.|++.++       ...+.+|+++
T Consensus        86 ~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy  128 (311)
T PRK05439         86 PFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL  128 (311)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence            45788999999999999999999774       3467777765

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=98.23  E-value=1.9e-06  Score=83.48  Aligned_cols=61  Identities=13%  Similarity=0.249  Sum_probs=45.7

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCch--HHH-HHhCCCChHHHHHhhchhHhH
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS--LVF-EAAGGESAAKAFRESDEKGYQ  150 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~--li~-~~~g~~~i~ei~~~~ge~~fr  150 (278)
                      .+..+++|+|+|+||+|||++|+.||+.++++|++.|.  +.+ ...| ..+.+++....+..|+
T Consensus        43 ~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG-~dvE~i~r~l~e~A~~  106 (441)
T TIGR00390        43 DEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG-RDVESMVRDLTDAAVK  106 (441)
T ss_pred             cccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCccc-CCHHHHHHHHHHHHHH
Confidence            45667899999999999999999999999999999884  333 2344 4555566555555443

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PHA03132 thymidine kinase; Provisional

Probab=98.21  E-value=9.7e-06  Score=81.47  Aligned_cols=30  Identities=23%  Similarity=0.162  Sum_probs=26.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCce
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYY  121 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~  121 (278)
                      .++.|+|.|..||||||+++.|++.+|..+
T Consensus       256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~V  285 (580)
T PHA03132        256 PACFLFLEGVMGVGKTTLLNHMRGILGDNV  285 (580)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHhCCce
Confidence            478999999999999999999999985443

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.15  E-value=5.9e-06  Score=73.60  Aligned_cols=34  Identities=15%  Similarity=0.173  Sum_probs=27.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhC-------CceecCchHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV  128 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg-------~~~iD~D~li  128 (278)
                      .|.|.|++||||||+++.|+..+.       ..++++|.+.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            478999999999999999999883       3456777764

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.15  E-value=1.5e-05  Score=74.00  Aligned_cols=37  Identities=14%  Similarity=0.138  Sum_probs=28.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC-------CceecCchHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV  128 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg-------~~~iD~D~li  128 (278)
                      .+..|.|.|++||||||+++.|+..+.       ..++.+|.+.
T Consensus        61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~  104 (290)
T TIGR00554        61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL  104 (290)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence            356888999999999999999987664       3356667654

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=98.12  E-value=1.8e-05  Score=69.02  Aligned_cols=43  Identities=19%  Similarity=0.243  Sum_probs=31.2

Q ss_pred             hhhccCCcEEEEEccCCCcHHHHHHHHHHHh---CCceecCchHHH
Q 023749           87 ISTELKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVF  129 (278)
Q Consensus        87 ~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD~D~li~  129 (278)
                      +.+.-.+..|++.|+|||||||++..+.+.+   ++.++|.|.+..
T Consensus         9 ~~~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~   54 (199)
T PF06414_consen    9 YPPQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ   54 (199)
T ss_dssp             ----SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred             cCcccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence            3345578889999999999999999999987   688899999753

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]

Probab=98.07  E-value=3.8e-06  Score=79.45  Aligned_cols=162  Identities=18%  Similarity=0.251  Sum_probs=87.6

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh---CCcee--cCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcC
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYF--DSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSM  163 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~~i--D~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~  163 (278)
                      +-+.|-.|+++|.+|+||||++-.|.+.|   |+|++  |.|.+..-...  .+. +-.+++++..|.+. ++.+-++. 
T Consensus        46 ~gfrgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~k--nlg-fs~edreenirria-evaklfad-  120 (627)
T KOG4238|consen   46 GGFRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNK--NLG-FSPEDREENIRRIA-EVAKLFAD-  120 (627)
T ss_pred             CCccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhh--ccC-CCchhHHHHHHHHH-HHHHHHhc-
Confidence            55778899999999999999999998866   78875  56666544321  110 11233455555432 22233332 


Q ss_pred             CCEEEEeC--CceeechhHHHhhh--C---CcEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc---cCcEE
Q 023749          164 GRLVVCAG--NGAVQSSANLALLR--H---GISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA---TADVT  233 (278)
Q Consensus       164 ~~~VI~~g--~g~v~~~~~~~~L~--~---~~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~---~AD~v  233 (278)
                      ...|..+.  ..+-.+..|-..+.  .   -+-||+++|.+++.+|+-++........++.. |.-.+..|+   .+.++
T Consensus       121 aglvcitsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkaragei~g-ftgids~ye~pe~~e~v  199 (627)
T KOG4238|consen  121 AGLVCITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGEIKG-FTGIDSDYEKPETPERV  199 (627)
T ss_pred             CCceeeehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhcccccc-ccccccccCCCCChhHH
Confidence            22222221  00111111211222  2   25799999999999992222110000001111 111122233   35556


Q ss_pred             EecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          234 VSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       234 Id~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                      ++            |...++.++++++++++.+.-
T Consensus       200 l~------------t~~~~v~~cvqqvve~lq~~~  222 (627)
T KOG4238|consen  200 LK------------TNLSTVSDCVQQVVELLQEQN  222 (627)
T ss_pred             hh------------cCCchHHHHHHHHHHHHHhcC
Confidence            55            667889999999999997543

>PHA00729 NTP-binding motif containing protein

Probab=98.02  E-value=4.7e-05  Score=68.27  Aligned_cols=41  Identities=17%  Similarity=0.117  Sum_probs=31.2

Q ss_pred             HHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      |..|+-+.++.. ..-.+|+|+|+||+||||+|..|+++++.
T Consensus         3 ~~~k~~~~~l~~-~~f~nIlItG~pGvGKT~LA~aLa~~l~~   43 (226)
T PHA00729          3 WLAKKIVSAYNN-NGFVSAVIFGKQGSGKTTYALKVARDVFW   43 (226)
T ss_pred             hHHHHHHHHHhc-CCeEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            344555555543 34458999999999999999999999863

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.94  E-value=7.6e-06  Score=65.07  Aligned_cols=29  Identities=28%  Similarity=0.395  Sum_probs=26.3

Q ss_pred             EEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           96 VFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        96 I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      |+|.|+||+||||+++.+|+.++.+++..
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i   29 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEI   29 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEE
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccc
Confidence            68999999999999999999999887544

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.94  E-value=7e-05  Score=75.56  Aligned_cols=53  Identities=17%  Similarity=0.104  Sum_probs=36.0

Q ss_pred             CccHHHHHHHHhhhh-ccC-CcEEEEEccCCCcHHHHHHHHHHHhC-CceecCchH
Q 023749           75 DPSFAVKKKAADIST-ELK-GTSVFLVGMNNAIKTHLGKFLADALR-YYYFDSDSL  127 (278)
Q Consensus        75 ~~~~~~~~~~~~~~~-~~~-~~~I~L~G~~GSGKSTlAk~LAe~Lg-~~~iD~D~l  127 (278)
                      |.-.-+--+|..+.. ... ...|.|.|++||||||+++.|+..+. ...+..|++
T Consensus        45 d~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy  100 (656)
T PLN02318         45 EKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY  100 (656)
T ss_pred             ccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence            333444444455543 222 35788899999999999999999873 346777765

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=97.93  E-value=2.3e-05  Score=76.16  Aligned_cols=37  Identities=16%  Similarity=0.311  Sum_probs=33.5

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCch
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS  126 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~  126 (278)
                      +..+.+|+|+|++|+|||++|+.||+.++.+|+..|.
T Consensus        47 e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~   83 (443)
T PRK05201         47 EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   83 (443)
T ss_pred             ccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence            3457899999999999999999999999999988875

>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]

Probab=97.89  E-value=7.2e-05  Score=65.02  Aligned_cols=164  Identities=19%  Similarity=0.247  Sum_probs=84.0

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHH--HHH---hCCCChHH---------------HHHhhchhHhH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV--FEA---AGGESAAK---------------AFRESDEKGYQ  150 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li--~~~---~g~~~i~e---------------i~~~~ge~~fr  150 (278)
                      -.|..|++.|..+|||||.+..|.+.+. +..+--.++  .+.   .| ..+..               +|...+++.  
T Consensus         3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~-~~~~~~~l~~FP~Rst~iG-k~i~~YL~k~~dl~d~~iHLlFSAnRwe~--   78 (208)
T KOG3327|consen    3 IRGALIVLEGLDRSGKSTQCGKLVESLI-PGLDPAELLRFPERSTSIG-KLIDGYLRKKSDLPDHTIHLLFSANRWEH--   78 (208)
T ss_pred             CCccEEeeeccccCCceeehhHHHHHHH-hccChHHhhhcchhccccc-HHHHHHHHhccCCcHHHHHHHhccchhhH--
Confidence            4688999999999999999999999883 222211110  000   11 11111               111111111  


Q ss_pred             HHHHHHHHHHHcCCCEEEEe--CCceeech-----hHH------HhhhCCcEEEEEcCHHHHHhhhcCC--CCCCC-hHH
Q 023749          151 QAETEVLKQLSSMGRLVVCA--GNGAVQSS-----ANL------ALLRHGISLWIDVPPGMVARMDHSG--FPESE-VLP  214 (278)
Q Consensus       151 ~~e~~vl~~l~~~~~~VI~~--g~g~v~~~-----~~~------~~L~~~~vV~L~a~~e~l~~R~~r~--rp~~~-~~~  214 (278)
                        ...+.++++....+|++-  ..|+....     ..|      .++++|+++||++|++.+.+|...|  |.... ..+
T Consensus        79 --~~~i~e~l~kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~rggfG~Erye~v~fqe  156 (208)
T KOG3327|consen   79 --VSLIKEKLAKGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARRGGFGEERYETVAFQE  156 (208)
T ss_pred             --HHHHHHHHhcCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHhcCcchhHHHHHHHHH
Confidence              112344555544444431  11211110     011      1345789999999999988883333  22111 111


Q ss_pred             HHHHHHHHhhhccccC-cEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCCCCccc
Q 023749          215 QLFALYKEMRDGYATA-DVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASISDPTSR  274 (278)
Q Consensus       215 ~l~~~~~er~~~Y~~A-D~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~~~~~~  274 (278)
                      .....|..-.. .+.. -.++|             ...+.|++.+.|..++...++.|.-+
T Consensus       157 kv~~~~q~l~r-~e~~~~~~vD-------------As~sve~V~~~V~~i~e~~~~~~~~~  203 (208)
T KOG3327|consen  157 KVLVFFQKLLR-KEDLNWHVVD-------------ASKSVEKVHQQVRSLVENVLSEPIEK  203 (208)
T ss_pred             HHHHHHHHHHh-ccCCCeEEEe-------------cCccHHHHHHHHHHHHHHhccCCCCC
Confidence            12222222110 0122 24666             24899999999988888777655444

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=97.87  E-value=4.8e-05  Score=71.21  Aligned_cols=36  Identities=31%  Similarity=0.279  Sum_probs=33.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l  127 (278)
                      +++.|+|+|++|||||++|..||+.++..+++.|.+
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~   38 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM   38 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence            467899999999999999999999999999999884

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=4.5e-05  Score=76.48  Aligned_cols=112  Identities=21%  Similarity=0.277  Sum_probs=69.3

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecC--chHHHHHhCC--CChHHHHHh-------------------hc
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAGG--ESAAKAFRE-------------------SD  145 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~--D~li~~~~g~--~~i~ei~~~-------------------~g  145 (278)
                      +-..++-++|.||||||||.+|+.+|..+|.||+..  -.++-.+.|.  +.+.++|++                   .+
T Consensus       219 Gv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkR  298 (802)
T KOG0733|consen  219 GVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKR  298 (802)
T ss_pred             CCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccch
Confidence            545678899999999999999999999999999864  2233222220  114444442                   22


Q ss_pred             hhHhHHHHHHHHHHHHcC----------CCEEEEeCCceeechhHHH-hhh----CCcEEEEEcCHHHHHhh
Q 023749          146 EKGYQQAETEVLKQLSSM----------GRLVVCAGNGAVQSSANLA-LLR----HGISLWIDVPPGMVARM  202 (278)
Q Consensus       146 e~~fr~~e~~vl~~l~~~----------~~~VI~~g~g~v~~~~~~~-~L~----~~~vV~L~a~~e~l~~R  202 (278)
                      +.+-+++|++++.++...          +.-|+.-|.  --+++.++ .|+    .+.-|.|.+|.++..++
T Consensus       299 e~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgA--TnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~  368 (802)
T KOG0733|consen  299 EEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGA--TNRPDSLDPALRRAGRFDREICLGVPSETAREE  368 (802)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEec--CCCCcccCHHHhccccccceeeecCCchHHHHH
Confidence            445678999998888641          111221111  11222221 343    45789999999886665

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=0.00016  Score=67.97  Aligned_cols=31  Identities=32%  Similarity=0.231  Sum_probs=27.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      ++.|++.||||+|||+++|.||++|.++..|
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~  207 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLSIRTND  207 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhheeeecC
Confidence            6689999999999999999999999877544

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.80  E-value=1.9e-05  Score=57.54  Aligned_cols=23  Identities=26%  Similarity=0.325  Sum_probs=21.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHh
Q 023749           95 SVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|+++|++||||||+++.|++.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999985

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PLN02772 guanylate kinase

Probab=97.77  E-value=0.00032  Score=67.66  Aligned_cols=26  Identities=15%  Similarity=0.184  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ..+.|+|+||+|+||+||.+.|.+.+
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~  159 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEF  159 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhc
Confidence            45689999999999999999998764

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.76  E-value=5.8e-05  Score=62.39  Aligned_cols=43  Identities=33%  Similarity=0.197  Sum_probs=36.1

Q ss_pred             HHHHHHHHhhhhcc-CCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           78 FAVKKKAADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        78 ~~~~~~~~~~~~~~-~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      .+.++-+..++..| .+..|+|.|..|+||||++|.+++.+|+.
T Consensus         6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150         6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            45556677777777 46799999999999999999999999975

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.74  E-value=0.0002  Score=67.21  Aligned_cols=129  Identities=23%  Similarity=0.328  Sum_probs=76.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHH--------------HHHhCCCChHHHHH------hhchhHhHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV--------------FEAAGGESAAKAFR------ESDEKGYQQ  151 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li--------------~~~~g~~~i~ei~~------~~ge~~fr~  151 (278)
                      +.++|+++|..|||||-|+--||.+++...|.+|.+-              ++..| +. ..+..      ++-...|+.
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~g-VP-HHLlg~l~~~~e~t~~~F~~   83 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKG-VP-HHLLGHLHPEAEYTAGEFED   83 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCC-CC-hHHhCcCChHhhccHHHHHH
Confidence            5689999999999999999999999999999887741              11111 10 00100      222344666


Q ss_pred             HHHHHHHHHHcCCCEEEEeCCceeechhHHH-------------------hhh-CCcEEEEEcCHHHHHhh-hcC--CCC
Q 023749          152 AETEVLKQLSSMGRLVVCAGNGAVQSSANLA-------------------LLR-HGISLWIDVPPGMVARM-DHS--GFP  208 (278)
Q Consensus       152 ~e~~vl~~l~~~~~~VI~~g~g~v~~~~~~~-------------------~L~-~~~vV~L~a~~e~l~~R-~~r--~rp  208 (278)
                      .-..+++++.+.+..=|.+||+-..-+.-+.                   .|+ ....+||+++..++.+| .+|  ..-
T Consensus        84 ~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~RVD~Ml  163 (348)
T KOG1384|consen   84 DASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKRVDDML  163 (348)
T ss_pred             HHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHHHHHHH
Confidence            6666777877654443445654322111110                   112 24799999999999999 433  111


Q ss_pred             CCChHHHHHHHHHH
Q 023749          209 ESEVLPQLFALYKE  222 (278)
Q Consensus       209 ~~~~~~~l~~~~~e  222 (278)
                      .....+++..+|.-
T Consensus       164 ~~Gl~eE~~~f~~~  177 (348)
T KOG1384|consen  164 ESGLLEELRDFYDP  177 (348)
T ss_pred             HcchHHHHHHHhhh
Confidence            12234555555443

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=97.73  E-value=0.0002  Score=64.10  Aligned_cols=56  Identities=18%  Similarity=0.301  Sum_probs=39.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCc-----eecCchHHHHHhCCCChHHHHHhhchhH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYY-----YFDSDSLVFEAAGGESAAKAFRESDEKG  148 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~-----~iD~D~li~~~~g~~~i~ei~~~~ge~~  148 (278)
                      .-+|+++|.|+.|||++|+.|++.|+|.     +++.+++.++..+...-.++|....++.
T Consensus        12 kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~   72 (222)
T PF01591_consen   12 KLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEA   72 (222)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHH
Confidence            3468889999999999999999988655     5677888888776322234555444443

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=0.00022  Score=71.99  Aligned_cols=66  Identities=24%  Similarity=0.254  Sum_probs=47.4

Q ss_pred             HHHHHHHHhhh-------------hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecC--chHHHHHhCCCC---hHH
Q 023749           78 FAVKKKAADIS-------------TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAGGES---AAK  139 (278)
Q Consensus        78 ~~~~~~~~~~~-------------~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~--D~li~~~~g~~~---i~e  139 (278)
                      .++|++.++-.             +.=.++-|++.||||||||++||.||..-+.+|+..  -+++-.++| .+   +.+
T Consensus       440 E~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vG-eSEr~ir~  518 (693)
T KOG0730|consen  440 EELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVG-ESERAIRE  518 (693)
T ss_pred             HHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcC-chHHHHHH
Confidence            56777666433             323578899999999999999999999999998764  556666666 33   444


Q ss_pred             HHHhh
Q 023749          140 AFRES  144 (278)
Q Consensus       140 i~~~~  144 (278)
                      +|...
T Consensus       519 iF~kA  523 (693)
T KOG0730|consen  519 VFRKA  523 (693)
T ss_pred             HHHHH
Confidence            55543

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.0009  Score=62.50  Aligned_cols=65  Identities=28%  Similarity=0.293  Sum_probs=47.9

Q ss_pred             cccccccCCcc-HHHHHHHHhhh-----hccCCc-----EEEEEccCCCcHHHHHHHHHHHhCCcee--cCchHHHHHhC
Q 023749           67 TVTKVAAEDPS-FAVKKKAADIS-----TELKGT-----SVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAG  133 (278)
Q Consensus        67 ~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~-----~I~L~G~~GSGKSTlAk~LAe~Lg~~~i--D~D~li~~~~g  133 (278)
                      .|..++.|+.. .+||+  +-|+     ..+.|+     -|+|.||||+|||.+||++|..-+-.|+  ++.+++-+++|
T Consensus       131 kWsDVAGLE~AKeALKE--AVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmG  208 (439)
T KOG0739|consen  131 KWSDVAGLEGAKEALKE--AVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG  208 (439)
T ss_pred             chhhhccchhHHHHHHh--heeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhc
Confidence            57777788877 45555  3444     333454     4999999999999999999998886665  45667777766

>PLN02840 tRNA dimethylallyltransferase

Probab=97.66  E-value=0.0001  Score=71.61  Aligned_cols=37  Identities=27%  Similarity=0.233  Sum_probs=33.4

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l  127 (278)
                      -+++.|+|+|++||||||++..||++++..+++.|.+
T Consensus        19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~   55 (421)
T PLN02840         19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSV   55 (421)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEecccc
Confidence            4567899999999999999999999999999988873

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=97.61  E-value=8.8e-05  Score=68.08  Aligned_cols=27  Identities=15%  Similarity=0.121  Sum_probs=24.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      .+.+|.+.|.+|+||||+|+.|+..+.
T Consensus        81 ~pfIIgiaGsvavGKST~ar~L~~ll~  107 (283)
T COG1072          81 RPFIIGIAGSVAVGKSTTARILQALLS  107 (283)
T ss_pred             CCEEEEeccCccccHHHHHHHHHHHHh
Confidence            466899999999999999999998774

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.57  E-value=6.7e-05  Score=58.55  Aligned_cols=28  Identities=32%  Similarity=0.362  Sum_probs=25.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      +.+++|+|++|+||||+++.|+..++..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            6789999999999999999999988765

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=97.57  E-value=0.00012  Score=69.14  Aligned_cols=34  Identities=15%  Similarity=0.067  Sum_probs=30.9

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHhCCcee
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i  122 (278)
                      ..+.++.|+|.|+||+||||+++.||+.+|++++
T Consensus        60 ~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~   93 (327)
T TIGR01650        60 GFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCV   93 (327)
T ss_pred             HHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence            4456889999999999999999999999999986

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PLN02748 tRNA dimethylallyltransferase

Probab=97.52  E-value=0.00021  Score=70.47  Aligned_cols=35  Identities=26%  Similarity=0.277  Sum_probs=32.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCch
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS  126 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~  126 (278)
                      ++++|+|+|+.|||||++|..||+.++..+++.|.
T Consensus        21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds   55 (468)
T PLN02748         21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS   55 (468)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence            56789999999999999999999999999999996

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.51  E-value=0.00026  Score=65.70  Aligned_cols=33  Identities=27%  Similarity=0.351  Sum_probs=30.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l  127 (278)
                      .|+|+|++|||||+++..|++.++..+++.|.+
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~   33 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM   33 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence            489999999999999999999999999998874

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.50  E-value=0.00016  Score=65.84  Aligned_cols=43  Identities=23%  Similarity=0.130  Sum_probs=35.3

Q ss_pred             HHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCcee
Q 023749           78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (278)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i  122 (278)
                      ..+.+++..+..  .+..|+|.|++|+|||++|+.||+.+|.+++
T Consensus         8 ~~l~~~~l~~l~--~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~   50 (262)
T TIGR02640         8 KRVTSRALRYLK--SGYPVHLRGPAGTGKTTLAMHVARKRDRPVM   50 (262)
T ss_pred             HHHHHHHHHHHh--cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence            345565555543  5889999999999999999999999998876

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.48  E-value=0.00024  Score=56.14  Aligned_cols=39  Identities=18%  Similarity=0.164  Sum_probs=30.0

Q ss_pred             HhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh---CCceec
Q 023749           85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFD  123 (278)
Q Consensus        85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD  123 (278)
                      ......-.+..++|.|++|+|||++++.++..+   +.+++.
T Consensus        11 ~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~   52 (151)
T cd00009          11 REALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLY   52 (151)
T ss_pred             HHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEE
Confidence            333333357899999999999999999999988   555443

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.47  E-value=0.00013  Score=59.27  Aligned_cols=28  Identities=36%  Similarity=0.294  Sum_probs=25.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCcee
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYF  122 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~i  122 (278)
                      .|+|+|++|+|||++++.||+.++.+++
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~   28 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGRPVI   28 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhcceE
Confidence            4789999999999999999999998874

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.45  E-value=0.0001  Score=61.77  Aligned_cols=27  Identities=26%  Similarity=0.212  Sum_probs=22.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCcee
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYF  122 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~i  122 (278)
                      +|+|+|.+|+||||+++.|++. |++++
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~-g~~~v   27 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR-GYPVV   27 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence            5899999999999999999988 99988

>PRK06761 hypothetical protein; Provisional

Probab=97.44  E-value=0.00011  Score=67.97  Aligned_cols=31  Identities=19%  Similarity=0.177  Sum_probs=26.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCcee
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i  122 (278)
                      +++.|+|+|++||||||+++.|++.++...+
T Consensus         2 m~~lIvI~G~~GsGKTTla~~L~~~L~~~g~   32 (282)
T PRK06761          2 MTKLIIIEGLPGFGKSTTAKMLNDILSQNGI   32 (282)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCcCce
Confidence            4678999999999999999999999976433

>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]

Probab=97.44  E-value=0.00062  Score=61.29  Aligned_cols=41  Identities=17%  Similarity=0.200  Sum_probs=37.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~  132 (278)
                      ++...+++|+||+||+|++.++++.++..++.+.+++++..
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~i   54 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEI   54 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHH
Confidence            58899999999999999999999999999999998887743

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.40  E-value=0.00015  Score=65.08  Aligned_cols=31  Identities=19%  Similarity=0.189  Sum_probs=25.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      -.+++|.||||+||||+|..+|+.+|..+.-
T Consensus        50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~   80 (233)
T PF05496_consen   50 LDHMLFYGPPGLGKTTLARIIANELGVNFKI   80 (233)
T ss_dssp             --EEEEESSTTSSHHHHHHHHHHHCT--EEE
T ss_pred             cceEEEECCCccchhHHHHHHHhccCCCeEe
Confidence            3579999999999999999999999988743

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.38  E-value=0.00022  Score=71.24  Aligned_cols=58  Identities=24%  Similarity=0.221  Sum_probs=39.6

Q ss_pred             ccc-cccccCCcc-HH-HHHHHHhhh--------hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           66 NTV-TKVAAEDPS-FA-VKKKAADIS--------TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        66 ~~~-~~~~~~~~~-~~-~~~~~~~~~--------~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      .+| -++.+-..+ ++ =|+|+.||.        +.-..+.++|+||+||||||..+.||+.+|+.+..
T Consensus         7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E   75 (519)
T PF03215_consen    7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE   75 (519)
T ss_pred             CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence            345 344443333 22 366666666        22234578889999999999999999999987653

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=97.35  E-value=0.0002  Score=69.68  Aligned_cols=36  Identities=28%  Similarity=0.362  Sum_probs=31.5

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCch
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS  126 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~  126 (278)
                      +....|+|+|++|+|||++|+.||+.++++|+..|-
T Consensus       106 ~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~  141 (412)
T PRK05342        106 LQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADA  141 (412)
T ss_pred             cCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecch
Confidence            356789999999999999999999999999876543

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.32  E-value=0.00029  Score=64.00  Aligned_cols=26  Identities=15%  Similarity=0.217  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ....++|.|+||+||||+|+.+|+.+
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            34679999999999999999999875

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=97.32  E-value=0.0031  Score=61.13  Aligned_cols=33  Identities=18%  Similarity=0.037  Sum_probs=28.9

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      ...++|+|+|.+||||||+++.|++.+|..++.
T Consensus       217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~  249 (399)
T PRK08099        217 FFVRTVAILGGESSGKSTLVNKLANIFNTTSAW  249 (399)
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence            346789999999999999999999999987643

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=0.00091  Score=69.08  Aligned_cols=47  Identities=26%  Similarity=0.224  Sum_probs=38.1

Q ss_pred             HHHHHHHHhhhhcc------------CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           78 FAVKKKAADISTEL------------KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        78 ~~~~~~~~~~~~~~------------~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      .+.|+-++||...|            -++-++|+||||+|||-+||++|.+-|.||+..
T Consensus       317 deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~sv  375 (774)
T KOG0731|consen  317 DEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSV  375 (774)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeee
Confidence            45566667776333            366799999999999999999999999999864

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.30  E-value=0.00026  Score=70.39  Aligned_cols=37  Identities=22%  Similarity=0.325  Sum_probs=32.7

Q ss_pred             hhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        87 ~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      +.+.|.+.+.+|+||+||||||.-+.|++.+|+.++.
T Consensus       104 ~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~E  140 (634)
T KOG1970|consen  104 FTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIE  140 (634)
T ss_pred             hccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence            3477788899999999999999999999999988653

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.30  E-value=0.00022  Score=60.89  Aligned_cols=27  Identities=30%  Similarity=0.352  Sum_probs=24.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      ..+.|+++|+||+||||+++.+++.|.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~   30 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLR   30 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence            467899999999999999999998873

>CHL00181 cbbX CbbX; Provisional

Probab=97.28  E-value=0.00041  Score=64.27  Aligned_cols=26  Identities=27%  Similarity=0.277  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|.+|+|.|+||+||||+|+.+++.+
T Consensus        58 ~~~~ill~G~pGtGKT~lAr~la~~~   83 (287)
T CHL00181         58 PGLHMSFTGSPGTGKTTVALKMADIL   83 (287)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            35679999999999999999999875

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.27  E-value=0.00029  Score=60.36  Aligned_cols=33  Identities=18%  Similarity=0.292  Sum_probs=27.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCC--ceecCc
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRY--YYFDSD  125 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~--~~iD~D  125 (278)
                      ++.|+|+|++||||||+|..|+..++.  .++.+.
T Consensus         1 ~~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~   35 (170)
T PRK05800          1 GMLILVTGGARSGKSRFAERLAAQSGLQVLYIATA   35 (170)
T ss_pred             CCEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence            467999999999999999999999874  455553

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.26  E-value=0.00038  Score=56.82  Aligned_cols=37  Identities=35%  Similarity=0.300  Sum_probs=28.9

Q ss_pred             HHhhhhccC-CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           84 AADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        84 ~~~~~~~~~-~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      |+.++..|+ |.+|+|.|..||||||+.|.+++.+|..
T Consensus         5 a~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~   42 (123)
T PF02367_consen    5 AKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGID   42 (123)
T ss_dssp             HHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            455565554 6689999999999999999999999875

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>CHL00195 ycf46 Ycf46; Provisional

Probab=97.25  E-value=0.0004  Score=68.96  Aligned_cols=35  Identities=20%  Similarity=0.248  Sum_probs=31.3

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D  125 (278)
                      -.++-|+|.|+||+|||.+|+.+|..+|++++..|
T Consensus       257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~  291 (489)
T CHL00195        257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLD  291 (489)
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEE
Confidence            35678999999999999999999999999987654

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=97.24  E-value=0.00045  Score=63.82  Aligned_cols=25  Identities=20%  Similarity=0.134  Sum_probs=22.2

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +..|+|.|+||+||||+|+.+++.+
T Consensus        58 ~~~vll~G~pGTGKT~lA~~ia~~l   82 (284)
T TIGR02880        58 TLHMSFTGNPGTGKTTVALRMAQIL   82 (284)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHH
Confidence            4489999999999999999888866

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=97.22  E-value=0.0004  Score=66.47  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=28.0

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHhC--Cceec
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFD  123 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg--~~~iD  123 (278)
                      +.+.|+.|+|.|+||+|||.+|-.+|+.||  .||+.
T Consensus        46 ~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~   82 (398)
T PF06068_consen   46 GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS   82 (398)
T ss_dssp             T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred             ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence            778999999999999999999999999998  77765

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=97.22  E-value=0.00031  Score=68.29  Aligned_cols=34  Identities=26%  Similarity=0.326  Sum_probs=29.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D  125 (278)
                      .+..|+|+|++|+|||++|+.||+.++++|.-.|
T Consensus       115 ~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~d  148 (413)
T TIGR00382       115 SKSNILLIGPTGSGKTLLAQTLARILNVPFAIAD  148 (413)
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHhcCCCeEEec
Confidence            4568999999999999999999999998886443

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PRK06620 hypothetical protein; Validated

Probab=97.19  E-value=0.0032  Score=55.85  Aligned_cols=46  Identities=13%  Similarity=0.098  Sum_probs=33.8

Q ss_pred             HHHHHHHHhhhhc--cCC--cEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           78 FAVKKKAADISTE--LKG--TSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        78 ~~~~~~~~~~~~~--~~~--~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      ......++++...  ..+  ..++|.|++|+|||++++.+++..+..++.
T Consensus        25 ~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~   74 (214)
T PRK06620         25 DQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK   74 (214)
T ss_pred             HHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence            3345555555532  223  569999999999999999999988876655

>PRK09087 hypothetical protein; Validated

Probab=97.19  E-value=0.00096  Score=59.68  Aligned_cols=37  Identities=19%  Similarity=0.208  Sum_probs=32.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV  128 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li  128 (278)
                      .+..++|.|++|||||++++.+++..+..+++.+.+.
T Consensus        43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~   79 (226)
T PRK09087         43 PSPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIG   79 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcc
Confidence            4567999999999999999999999999999886443

>PHA02244 ATPase-like protein

Probab=97.18  E-value=0.00069  Score=64.98  Aligned_cols=47  Identities=23%  Similarity=0.336  Sum_probs=37.0

Q ss_pred             HHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749           79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (278)
Q Consensus        79 ~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l  127 (278)
                      ....++..++.  .+..|+|.|++|+|||++++.++..+|++++..+.+
T Consensus       107 ~~~~ri~r~l~--~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l  153 (383)
T PHA02244        107 YETADIAKIVN--ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI  153 (383)
T ss_pred             HHHHHHHHHHh--cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence            34444444443  477899999999999999999999999999866544

>PF13173 AAA_14: AAA domain

Probab=97.18  E-value=0.00051  Score=55.54  Aligned_cols=37  Identities=30%  Similarity=0.216  Sum_probs=31.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhC----CceecCchHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALR----YYYFDSDSLVF  129 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg----~~~iD~D~li~  129 (278)
                      ++.++|.|+.|+||||+++.+++.+.    +.+++.|+...
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~   42 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD   42 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH
Confidence            67899999999999999999998875    66777776543

>PRK10646 ADP-binding protein; Provisional

Probab=97.17  E-value=0.00084  Score=56.79  Aligned_cols=43  Identities=23%  Similarity=0.176  Sum_probs=36.3

Q ss_pred             HHHHHHHHhhhhccC-CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           78 FAVKKKAADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        78 ~~~~~~~~~~~~~~~-~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      .+.++-++.++..|+ |.+|+|.|.-|+||||++|.+++.||..
T Consensus        12 ~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~   55 (153)
T PRK10646         12 QATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQ   55 (153)
T ss_pred             HHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            456666777887776 6688999999999999999999999974

>PHA03136 thymidine kinase; Provisional

Probab=97.17  E-value=0.0079  Score=57.75  Aligned_cols=25  Identities=20%  Similarity=0.124  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCHHHHHhh-hcCCCCCC
Q 023749          186 HGISLWIDVPPGMVARM-DHSGFPES  210 (278)
Q Consensus       186 ~~~vV~L~a~~e~l~~R-~~r~rp~~  210 (278)
                      .+.+|||+++++++.+| .+|+|+.+
T Consensus       192 pD~IIyL~l~~e~~~~RI~kRgR~~E  217 (378)
T PHA03136        192 GGNIVIMDLDECEHAERIIARGRPGE  217 (378)
T ss_pred             CCEEEEEeCCHHHHHHHHHHcCCCcc
Confidence            45899999999999999 88888864

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=97.16  E-value=0.00052  Score=61.48  Aligned_cols=36  Identities=11%  Similarity=0.149  Sum_probs=29.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCce-ecCchHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYY-FDSDSLVFE  130 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~-iD~D~li~~  130 (278)
                      +.|.|+|++||||||+|+.+.+ .|.++ +.+.+.+++
T Consensus         1 miI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d~ik~   37 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFIIE-NYNAVKYQLADPIKE   37 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhHHHHH
Confidence            5799999999999999998855 67777 777666554

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=0.00048  Score=65.18  Aligned_cols=38  Identities=16%  Similarity=0.314  Sum_probs=34.4

Q ss_pred             hhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           86 DISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        86 ~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      ++..+..|++|+++||.|+|||.+|++||+-.|.||+-
T Consensus        43 ~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiK   80 (444)
T COG1220          43 ELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIK   80 (444)
T ss_pred             HHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence            34478899999999999999999999999999999975

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=97.13  E-value=0.00072  Score=67.08  Aligned_cols=33  Identities=30%  Similarity=0.303  Sum_probs=29.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D  125 (278)
                      ++.++|.|+||+|||++++.||..++.+++..+
T Consensus        88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i~  120 (495)
T TIGR01241        88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS  120 (495)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHcCCCeeecc
Confidence            567999999999999999999999999987653

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK04195 replication factor C large subunit; Provisional

Probab=97.12  E-value=0.00061  Score=67.37  Aligned_cols=47  Identities=17%  Similarity=0.154  Sum_probs=35.7

Q ss_pred             HHHHHHHHhhhhcc----CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           78 FAVKKKAADISTEL----KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        78 ~~~~~~~~~~~~~~----~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      ..+++...++....    .++.++|.|+||+||||+++.||+.+|+.++..
T Consensus        20 ~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~iel   70 (482)
T PRK04195         20 EKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIEL   70 (482)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            34444455554322    267899999999999999999999999888754

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.11  E-value=0.0007  Score=59.32  Aligned_cols=52  Identities=15%  Similarity=0.140  Sum_probs=37.0

Q ss_pred             ccHHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchH
Q 023749           76 PSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSL  127 (278)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~l  127 (278)
                      .+....+....++..-.+..|+|+|++|+|||++++.++..+.     +.+++.+.+
T Consensus        21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~   77 (226)
T TIGR03420        21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL   77 (226)
T ss_pred             CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence            3444555566655444577899999999999999999998763     345555444

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]

Probab=97.11  E-value=0.0027  Score=56.01  Aligned_cols=35  Identities=26%  Similarity=0.180  Sum_probs=29.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHh-CCceecCchHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVF  129 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~L-g~~~iD~D~li~  129 (278)
                      +|.|.|...|||||+|+.|.+.+ |...|+-|+++.
T Consensus         6 ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyK   41 (225)
T KOG3308|consen    6 IVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYK   41 (225)
T ss_pred             EEEeecccCCCHhHHHHHHHHHccCCeeeccccccC
Confidence            57788999999999999999888 577888888753

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.10  E-value=0.00047  Score=65.85  Aligned_cols=28  Identities=21%  Similarity=0.263  Sum_probs=25.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      +.+.++|.|||||||||+|+.|++.++.
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4578899999999999999999999965

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=97.07  E-value=0.0043  Score=56.08  Aligned_cols=60  Identities=12%  Similarity=-0.001  Sum_probs=45.5

Q ss_pred             CCcceecccccCCccccccccccCCccHHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           51 KPRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      |+|-+.|+..++.+      ...-.+..+++.+..|.+..=...++.|.|+||+||||++..++++
T Consensus        83 ~~~~va~~~~~qv~------~~D~s~~de~y~~~~e~L~~n~~~l~glag~pGtgkst~~a~v~~a  142 (323)
T KOG2702|consen   83 QPNKVAEMIENQVL------FKDHSEDDEFYPVKYEALTSNNEELTGLAGRPGTGKSTRIAAVDNA  142 (323)
T ss_pred             ChhHHHHHHHhccc------ccCcchhhhhhHHHHHHhcccchheeeeecCCCCcchhHHHHHHhh
Confidence            45556666665543      2333345788999999887667788999999999999999999885

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=97.07  E-value=0.00049  Score=66.31  Aligned_cols=33  Identities=24%  Similarity=0.203  Sum_probs=29.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      .++.|+|.|+||+|||++|+.+|..++.+++..
T Consensus       164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v  196 (389)
T PRK03992        164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV  196 (389)
T ss_pred             CCCceEEECCCCCChHHHHHHHHHHhCCCEEEe
Confidence            467899999999999999999999999887643

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.98  E-value=0.0037  Score=57.56  Aligned_cols=47  Identities=21%  Similarity=0.153  Sum_probs=39.2

Q ss_pred             HHHHHHHHhhh---------hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           78 FAVKKKAADIS---------TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        78 ~~~~~~~~~~~---------~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      .+-|.|+.=|.         ++-++++|++.||||+|||-+||.||.+...|++..
T Consensus       127 EeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~v  182 (368)
T COG1223         127 EEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLV  182 (368)
T ss_pred             HHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEe
Confidence            45666665554         556789999999999999999999999999998764

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.96  E-value=0.00082  Score=63.95  Aligned_cols=33  Identities=24%  Similarity=0.203  Sum_probs=29.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      .++.|+|.|+||+|||++++.++..++.+++..
T Consensus       155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v  187 (364)
T TIGR01242       155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV  187 (364)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence            367799999999999999999999999887654

Many proteins may score above the trusted cutoff because an internal

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=96.96  E-value=0.00053  Score=56.45  Aligned_cols=29  Identities=34%  Similarity=0.360  Sum_probs=21.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      +|+|.|+||+||||+++.||+.+|..|.+
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~~f~R   29 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGLSFKR   29 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCCceeE
Confidence            47899999999999999999999988754

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=96.95  E-value=0.0057  Score=55.01  Aligned_cols=24  Identities=25%  Similarity=0.241  Sum_probs=22.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHh
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ..|+|+|.|.|||||.|+.|.+.|
T Consensus         2 pLVvi~G~P~SGKstrA~~L~~~l   25 (281)
T KOG3062|consen    2 PLVVICGLPCSGKSTRAVELREAL   25 (281)
T ss_pred             CeEEEeCCCCCCchhHHHHHHHHH
Confidence            468999999999999999999887

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=96.94  E-value=0.0018  Score=62.26  Aligned_cols=41  Identities=15%  Similarity=-0.002  Sum_probs=31.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecC--chHHHHHhC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG  133 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~--D~li~~~~g  133 (278)
                      +..+.|.||||+|||.+|+++|+++|++++..  .++..+..|
T Consensus       148 PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG  190 (413)
T PLN00020        148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG  190 (413)
T ss_pred             CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence            45667779999999999999999999997654  444444444

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.94  E-value=0.0086  Score=53.66  Aligned_cols=47  Identities=15%  Similarity=0.121  Sum_probs=33.2

Q ss_pred             HHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCch
Q 023749           80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDS  126 (278)
Q Consensus        80 ~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~  126 (278)
                      ....+..+...-.+..++|+|++|+|||+++..++..+.     ..|+..+.
T Consensus        32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            334444444334557899999999999999999998764     34665544

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=96.94  E-value=0.0054  Score=58.42  Aligned_cols=106  Identities=20%  Similarity=0.174  Sum_probs=63.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH---hCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEE
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA---AGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV  168 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~---~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI  168 (278)
                      ....+++.|+.|||||++...|.+. |++.+|...+.+..   +|+...    .+.....|...=...|..+.....++|
T Consensus       140 ~~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehrGS~fG~~~~----~qpsQ~~Fe~~l~~~l~~~~~~~~i~v  214 (345)
T PRK11784        140 QFPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHRGSSFGRLGG----PQPSQKDFENLLAEALLKLDPARPIVV  214 (345)
T ss_pred             cCceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhccccccCCCC----CCcchHHHHHHHHHHHHcCCCCCeEEE
Confidence            4456889999999999999999764 88999988776542   231111    111233443322222222222233344


Q ss_pred             EeCC---c-eeechhHHHhhhCCcEEEEEcCHHHHHhh
Q 023749          169 CAGN---G-AVQSSANLALLRHGISLWIDVPPGMVARM  202 (278)
Q Consensus       169 ~~g~---g-~v~~~~~~~~L~~~~vV~L~a~~e~l~~R  202 (278)
                      -+.+   | +.+...-++.++.+.+|+|++|.+.+.+|
T Consensus       215 E~Es~~IG~~~lP~~l~~~m~~~~~v~i~~~~e~Rv~~  252 (345)
T PRK11784        215 EDESRRIGRVHLPEALYEAMQQAPIVVVEAPLEERVER  252 (345)
T ss_pred             EeccccccCccCCHHHHHHHhhCCEEEEECCHHHHHHH
Confidence            3322   1 22223334566788999999999999999

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=96.93  E-value=0.00086  Score=57.40  Aligned_cols=26  Identities=27%  Similarity=0.264  Sum_probs=22.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHh---CCc
Q 023749           95 SVFLVGMNNAIKTHLGKFLADAL---RYY  120 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~L---g~~  120 (278)
                      +|+|+|.||+||||+.+.+.+.+   |++
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~   29 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKGLP   29 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTCGG
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccCCc
Confidence            58999999999999999999998   655

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=96.92  E-value=0.0017  Score=59.79  Aligned_cols=29  Identities=21%  Similarity=0.212  Sum_probs=25.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCce
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYY  121 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~  121 (278)
                      ...++|.|+||+|||++++.+|..++..+
T Consensus        30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~   58 (305)
T TIGR00635        30 LDHLLLYGPPGLGKTTLAHIIANEMGVNL   58 (305)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            45699999999999999999999998664

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=96.92  E-value=0.0016  Score=54.72  Aligned_cols=42  Identities=29%  Similarity=0.209  Sum_probs=35.6

Q ss_pred             HHHHHHHHhhhhcc-CCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           78 FAVKKKAADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        78 ~~~~~~~~~~~~~~-~~~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      .+.++=++.+...| .|.+|+|.|.-||||||++|.+++.||.
T Consensus         9 ~~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~   51 (149)
T COG0802           9 EATLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGV   51 (149)
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence            34455567777777 7999999999999999999999999984

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.90  E-value=0.00093  Score=64.74  Aligned_cols=33  Identities=24%  Similarity=0.193  Sum_probs=30.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      .++.|+|.|+||+|||++++.+|..++.+++..
T Consensus       178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i  210 (398)
T PTZ00454        178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV  210 (398)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence            578899999999999999999999999888754

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.89  E-value=0.00094  Score=57.28  Aligned_cols=26  Identities=35%  Similarity=0.370  Sum_probs=23.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      ..++|+||+|+|||.+|+.||+.+..
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~   29 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFV   29 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            36889999999999999999999985

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.00097  Score=62.68  Aligned_cols=36  Identities=31%  Similarity=0.385  Sum_probs=32.4

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D  125 (278)
                      +|...+|+|+||.|||||-+|+-||+.|+.||-=.|
T Consensus        94 EL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiAD  129 (408)
T COG1219          94 ELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIAD  129 (408)
T ss_pred             eeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeecc
Confidence            478899999999999999999999999999986444

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=96.86  E-value=0.0011  Score=62.55  Aligned_cols=38  Identities=16%  Similarity=0.056  Sum_probs=31.7

Q ss_pred             HhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      ..+.+.+ ++.|+|+|.+|+||||+++.|++.+|.+++.
T Consensus       155 ~~~~~~~-~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~  192 (325)
T TIGR01526       155 REVRPFF-VKTVAILGGESTGKSTLVNKLAAVFNTTSAW  192 (325)
T ss_pred             HHHHhhc-CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence            4444544 5689999999999999999999999998854

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>CHL00176 ftsH cell division protein; Validated

Probab=96.85  E-value=0.0015  Score=66.93  Aligned_cols=32  Identities=31%  Similarity=0.333  Sum_probs=29.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      ++.|+|.|+||+|||++|+.+|..++.+++..
T Consensus       216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i  247 (638)
T CHL00176        216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI  247 (638)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence            56799999999999999999999999998764

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.85  E-value=0.0011  Score=52.80  Aligned_cols=34  Identities=24%  Similarity=0.120  Sum_probs=26.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l  127 (278)
                      .+..++|.|++||||||+++.+.  -|-..++.|++
T Consensus        14 ~ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di   47 (107)
T cd00820          14 GKVGVLITGDSGIGKTELALELI--KRKHRLVGDDN   47 (107)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeH
Confidence            36789999999999999999987  34444555554

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=96.84  E-value=0.0036  Score=58.50  Aligned_cols=35  Identities=17%  Similarity=0.253  Sum_probs=31.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l  127 (278)
                      .++.|+|+||.|||||.+|-.||++ +..+|+.|..
T Consensus         3 ~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~   37 (300)
T PRK14729          3 ENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI   37 (300)
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence            3568999999999999999999999 4589998875

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=96.84  E-value=0.001  Score=62.40  Aligned_cols=37  Identities=32%  Similarity=0.327  Sum_probs=32.8

Q ss_pred             hhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        87 ~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      +...+.+..++|.|+||+|||++++.+|+.+|++++.
T Consensus        37 l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~   73 (329)
T COG0714          37 LLALLAGGHVLLEGPPGVGKTLLARALARALGLPFVR   73 (329)
T ss_pred             HHHHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence            3356789999999999999999999999999988753

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=96.83  E-value=0.001  Score=64.03  Aligned_cols=34  Identities=21%  Similarity=0.227  Sum_probs=29.3

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l  127 (278)
                      ...+|-||||+||||+|+.+|...+..|.-....
T Consensus        49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv   82 (436)
T COG2256          49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV   82 (436)
T ss_pred             ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence            4678899999999999999999999998765443

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.0027  Score=60.52  Aligned_cols=42  Identities=26%  Similarity=0.260  Sum_probs=36.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceec--CchHHHHHhC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAAG  133 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD--~D~li~~~~g  133 (278)
                      .++-|+|.||||+|||-+||++|...++.|+.  .-+++++..|
T Consensus       184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiG  227 (406)
T COG1222         184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIG  227 (406)
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhc
Confidence            58889999999999999999999999999875  3556777666

>PRK06893 DNA replication initiation factor; Validated

Probab=96.81  E-value=0.015  Score=51.88  Aligned_cols=35  Identities=20%  Similarity=0.263  Sum_probs=28.2

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh-----CCceecCc
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSD  125 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L-----g~~~iD~D  125 (278)
                      .....++|.|++|+|||+++..++..+     ...|++.+
T Consensus        37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            455678999999999999999999875     45566653

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=96.80  E-value=0.0013  Score=61.73  Aligned_cols=31  Identities=23%  Similarity=0.172  Sum_probs=27.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCcee
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i  122 (278)
                      ....++|.|+||+||||+|+.+|+.+++.+.
T Consensus        50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~~   80 (328)
T PRK00080         50 ALDHVLLYGPPGLGKTTLANIIANEMGVNIR   80 (328)
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence            3568999999999999999999999998653

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=96.79  E-value=0.0046  Score=57.95  Aligned_cols=36  Identities=28%  Similarity=0.212  Sum_probs=33.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l  127 (278)
                      ..+.|+|+||-+||||-+|-.||+++|.++|+.|..
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm   37 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM   37 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence            356899999999999999999999999999999985

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.76  E-value=0.0011  Score=54.60  Aligned_cols=24  Identities=25%  Similarity=0.229  Sum_probs=21.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhC
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      .|+|+|++||||||+++.|++.+.
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCC
Confidence            378999999999999999998754

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=96.76  E-value=0.002  Score=61.40  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=31.7

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHhC--Cceec
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFD  123 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg--~~~iD  123 (278)
                      +.+.|+-|++.||||+|||.+|-.+|+.||  .||+.
T Consensus        61 gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~   97 (450)
T COG1224          61 GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA   97 (450)
T ss_pred             CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee
Confidence            678999999999999999999999999998  66653

>COG5324 Uncharacterized conserved protein [Function unknown]

Probab=96.75  E-value=0.018  Score=56.85  Aligned_cols=33  Identities=18%  Similarity=0.221  Sum_probs=30.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l  127 (278)
                      .|+=+...|+||||+|+.|.+-+||+++-.|++
T Consensus       376 ll~pia~igcgktt~ak~l~~lf~w~~vqnd~l  408 (758)
T COG5324         376 LLVPIATIGCGKTTVAKILEKLFGWPVVQNDNL  408 (758)
T ss_pred             EEEEEEEeccCcccHHHHHHHHcCCcccccCCC
Confidence            666688999999999999999999999999987

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.73  E-value=0.0016  Score=63.95  Aligned_cols=32  Identities=25%  Similarity=0.233  Sum_probs=29.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      .++.++|.|+||+|||++|+.+|..++.+++.
T Consensus       216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~  247 (438)
T PTZ00361        216 PPKGVILYGPPGTGKTLLAKAVANETSATFLR  247 (438)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE
Confidence            56789999999999999999999999988764

>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2

Probab=96.72  E-value=0.005  Score=52.29  Aligned_cols=73  Identities=16%  Similarity=0.190  Sum_probs=38.5

Q ss_pred             CCcEEEEEcCHHHHHhh---h--cCCCCCCChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHH
Q 023749          186 HGISLWIDVPPGMVARM---D--HSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEV  260 (278)
Q Consensus       186 ~~~vV~L~a~~e~l~~R---~--~r~rp~~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I  260 (278)
                      +++-|||+|+++++++|   +  ..+. ..+ ++.+.....+|+..=.  .-.+.+-+.|+..-++||+++|++|++++|
T Consensus        80 A~~KifLtAs~e~RA~RR~~e~~~~g~-~~~-~e~v~~~i~~RD~~D~--~R~~aPL~~a~DAi~IDts~lti~evv~~i  155 (157)
T PF02224_consen   80 ADLKIFLTASPEVRARRRYKELQEKGK-KVS-YEEVLEDIKERDERDS--NREVAPLKKAEDAIVIDTSNLTIEEVVEKI  155 (157)
T ss_dssp             -SEEEEEE--HHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHHH--CTSSS-SS--TTSEEEETTTS-HHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHhCCC-CCC-HHHHHHHHHhhChhhc--cCccCCCccCCCeEEEECCCCCHHHHHHHH
Confidence            56899999999999988   2  2231 112 3444444444443111  111222233444556779999999999998


Q ss_pred             HH
Q 023749          261 KW  262 (278)
Q Consensus       261 ~~  262 (278)
                      ++
T Consensus       156 l~  157 (157)
T PF02224_consen  156 LE  157 (157)
T ss_dssp             HH
T ss_pred             hC
Confidence            75

7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.71  E-value=0.0033  Score=62.81  Aligned_cols=29  Identities=28%  Similarity=0.251  Sum_probs=26.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      .++.|+|.||||+|||++++.+|..++.+
T Consensus       215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~  243 (512)
T TIGR03689       215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR  243 (512)
T ss_pred             CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence            46789999999999999999999998765

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PLN03025 replication factor C subunit; Provisional

Probab=96.70  E-value=0.0027  Score=59.37  Aligned_cols=41  Identities=20%  Similarity=0.050  Sum_probs=32.1

Q ss_pred             cHHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           77 SFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +.++......+...-...+++|.|+||+||||+++.+|+.+
T Consensus        18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            34555666666654445678999999999999999999987

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=96.70  E-value=0.0013  Score=51.81  Aligned_cols=23  Identities=30%  Similarity=0.340  Sum_probs=20.9

Q ss_pred             EEEEccCCCcHHHHHHHHHHHhC
Q 023749           96 VFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        96 I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      |+|.|++|+|||++++.|++.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999998764

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=96.69  E-value=0.0015  Score=58.29  Aligned_cols=34  Identities=24%  Similarity=0.171  Sum_probs=27.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l  127 (278)
                      ++++|.||.|+|||.+|-.||+++|++++..|.+
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dri   35 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRI   35 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SG
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhCCCEEEecce
Confidence            4678899999999999999999999999988875

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.69  E-value=0.0015  Score=51.95  Aligned_cols=25  Identities=32%  Similarity=0.212  Sum_probs=20.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +..++|.|++|+|||++++.+++.+
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999999977

>PF05729 NACHT: NACHT domain

Probab=96.69  E-value=0.0016  Score=53.38  Aligned_cols=25  Identities=24%  Similarity=0.276  Sum_probs=22.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      +.++|.|.+|+||||+++.++..+.
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~   25 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLA   25 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHH
Confidence            3689999999999999999998763

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=0.0049  Score=62.31  Aligned_cols=33  Identities=24%  Similarity=0.248  Sum_probs=30.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      .+.-|+|+||||||||-+||++|.+-|+.|++.
T Consensus       544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFisV  576 (802)
T KOG0733|consen  544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISV  576 (802)
T ss_pred             CCCceEEeCCCCccHHHHHHHHhhhccCceEee
Confidence            578899999999999999999999999999874

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=96.67  E-value=0.0022  Score=64.83  Aligned_cols=41  Identities=17%  Similarity=0.141  Sum_probs=32.8

Q ss_pred             HHHHHHHHhhh------hccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           78 FAVKKKAADIS------TELKGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        78 ~~~~~~~~~~~------~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      .++++++.++.      -.-+++.++|+||||+||||+|+.|++.+.
T Consensus        82 ee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le  128 (644)
T PRK15455         82 EEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME  128 (644)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence            56677766665      223678999999999999999999999874

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=96.67  E-value=0.0018  Score=55.26  Aligned_cols=32  Identities=25%  Similarity=0.315  Sum_probs=27.8

Q ss_pred             HhhhhccCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .++...|+++.++|+|++|+||||+...|...
T Consensus        27 ~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~   58 (161)
T PF03193_consen   27 EELKELLKGKTSVLLGQSGVGKSSLINALLPE   58 (161)
T ss_dssp             HHHHHHHTTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred             HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhh
Confidence            45667788999999999999999999999653

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.65  E-value=0.0015  Score=58.32  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=21.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      +|-+++|+||+||||||+-|.|.
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRclN   49 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCLN   49 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH
Confidence            58899999999999999999994

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=96.65  E-value=0.0015  Score=55.92  Aligned_cols=33  Identities=12%  Similarity=0.151  Sum_probs=29.7

Q ss_pred             EEEEccCCCcHHHHHHHHHHHhC-CceecCchHH
Q 023749           96 VFLVGMNNAIKTHLGKFLADALR-YYYFDSDSLV  128 (278)
Q Consensus        96 I~L~G~~GSGKSTlAk~LAe~Lg-~~~iD~D~li  128 (278)
                      |+=++.+||||||+|..|+.-+| |-++-+|++-
T Consensus         2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~   35 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNIT   35 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCC
Confidence            45579999999999999999999 9999999973

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PRK13342 recombination factor protein RarA; Reviewed

Probab=96.64  E-value=0.0025  Score=61.81  Aligned_cols=33  Identities=24%  Similarity=0.194  Sum_probs=28.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      ....++|.|+||+||||+|+.+++.++..++..
T Consensus        35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l   67 (413)
T PRK13342         35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEAL   67 (413)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            445899999999999999999999998887654

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.63  E-value=0.0025  Score=56.30  Aligned_cols=49  Identities=16%  Similarity=0.262  Sum_probs=35.0

Q ss_pred             HHHHHHhhhh-ccCCcEEEEEccCCCcHHHHHHHHHHHh-----CCceecCchHH
Q 023749           80 VKKKAADIST-ELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLV  128 (278)
Q Consensus        80 ~~~~~~~~~~-~~~~~~I~L~G~~GSGKSTlAk~LAe~L-----g~~~iD~D~li  128 (278)
                      +.....++.. .-.+..++|+|++|+|||++++.++..+     .+.+++.....
T Consensus        28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~   82 (227)
T PRK08903         28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL   82 (227)
T ss_pred             HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence            3344444432 2346689999999999999999999876     56677765544

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=96.62  E-value=0.0024  Score=53.79  Aligned_cols=36  Identities=19%  Similarity=0.222  Sum_probs=30.0

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l  127 (278)
                      ..|+-|+|+|++|+||||++..|.++ |+.++.-|.+
T Consensus        12 ~~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD~v   47 (149)
T cd01918          12 VGGIGVLITGPSGIGKSELALELIKR-GHRLVADDRV   47 (149)
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECCEE
Confidence            45889999999999999999999774 8888865543

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.60  E-value=0.0071  Score=59.35  Aligned_cols=36  Identities=25%  Similarity=0.308  Sum_probs=29.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCchH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSL  127 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~l  127 (278)
                      .+.+|+++|++|+||||++..||..+   |+.  ++++|.+
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~  134 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY  134 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence            46789999999999999999999877   433  5677764

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.58  E-value=0.0042  Score=61.97  Aligned_cols=39  Identities=28%  Similarity=0.228  Sum_probs=32.0

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecC-chHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS-DSLVFEA  131 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~-D~li~~~  131 (278)
                      ++-|+|+||||+|||-+||++|-+-|.||+.+ ...+.++
T Consensus       337 PKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm  376 (752)
T KOG0734|consen  337 PKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM  376 (752)
T ss_pred             CCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence            45799999999999999999999999998753 3444443

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=96.54  E-value=0.004  Score=57.76  Aligned_cols=42  Identities=17%  Similarity=0.056  Sum_probs=31.1

Q ss_pred             cHHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           77 SFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      ...+++....+...-....++|.|++|+||||+++.+++.+.
T Consensus        20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            345555555555433334799999999999999999999874

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=96.52  E-value=0.0027  Score=53.61  Aligned_cols=33  Identities=27%  Similarity=0.271  Sum_probs=26.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHh---CC--ceecCchH
Q 023749           95 SVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSL  127 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~L---g~--~~iD~D~l  127 (278)
                      .++++|++|+||||++..++..+   |.  .+++.|..
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~   39 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY   39 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence            57899999999999999998875   43  35777754

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=96.50  E-value=0.0024  Score=56.61  Aligned_cols=36  Identities=31%  Similarity=0.423  Sum_probs=26.6

Q ss_pred             HHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           81 KKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        81 ~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      -++|.+++- ..+-.|++.|+||+|||++|+.+..-|
T Consensus        11 aKrAL~iAA-aG~h~lLl~GppGtGKTmlA~~l~~lL   46 (206)
T PF01078_consen   11 AKRALEIAA-AGGHHLLLIGPPGTGKTMLARRLPSLL   46 (206)
T ss_dssp             HHHHHHHHH-HCC--EEEES-CCCTHHHHHHHHHHCS
T ss_pred             HHHHHHHHH-cCCCCeEEECCCCCCHHHHHHHHHHhC
Confidence            456777764 357899999999999999999998743

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=96.50  E-value=0.0022  Score=51.70  Aligned_cols=26  Identities=42%  Similarity=0.393  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+..+
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEccCCCccccceeeecccc
Confidence            58899999999999999999997543

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.50  E-value=0.011  Score=57.96  Aligned_cols=36  Identities=19%  Similarity=0.222  Sum_probs=29.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh---CC--ceecCchHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSLV  128 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L---g~--~~iD~D~li  128 (278)
                      +..|+++|++||||||.+..||..+   |.  -++++|...
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R  140 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR  140 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence            5689999999999999999999766   54  357888754

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.50  E-value=0.0023  Score=57.98  Aligned_cols=24  Identities=29%  Similarity=0.502  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|.++.|+|.+||||||+++.|+-
T Consensus        32 ~Ge~lgivGeSGsGKSTL~r~l~G   55 (252)
T COG1124          32 RGETLGIVGESGSGKSTLARLLAG   55 (252)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhc
Confidence            599999999999999999999974

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.48  E-value=0.0079  Score=58.75  Aligned_cols=37  Identities=24%  Similarity=0.219  Sum_probs=29.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh----C--CceecCchHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL----R--YYYFDSDSLV  128 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L----g--~~~iD~D~li  128 (278)
                      +++.|+|+|++||||||++..||..+    |  ..+++.|...
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R  264 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR  264 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence            46789999999999999999999754    3  3357777743

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=96.47  E-value=0.0035  Score=64.36  Aligned_cols=32  Identities=28%  Similarity=0.339  Sum_probs=28.8

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      ++.|+|.|+||+|||++++.++..++.+++..
T Consensus       185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~i  216 (644)
T PRK10733        185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI  216 (644)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            45699999999999999999999999998754

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=96.46  E-value=0.0026  Score=62.89  Aligned_cols=35  Identities=26%  Similarity=0.204  Sum_probs=30.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCch
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS  126 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~  126 (278)
                      .++.|+|.||||+|||.+|+.+|..++++|+..+.
T Consensus       275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~  309 (494)
T COG0464         275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKG  309 (494)
T ss_pred             CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeC
Confidence            35579999999999999999999999999886543

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=96.46  E-value=0.0023  Score=53.60  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=20.3

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ++|+|+|++|||||||++.|-.
T Consensus         2 krimliG~~g~GKTTL~q~L~~   23 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNG   23 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcC
Confidence            6899999999999999999965

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=96.45  E-value=0.0054  Score=56.74  Aligned_cols=45  Identities=16%  Similarity=0.041  Sum_probs=32.9

Q ss_pred             HHHHHHHHhhhhccC-CcEEEEEccCCCcHHHHHHHHHHHhCCcee
Q 023749           78 FAVKKKAADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (278)
Q Consensus        78 ~~~~~~~~~~~~~~~-~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i  122 (278)
                      ..+++....+...-. +..+++.|++|+||||+++.+++.++..++
T Consensus        27 ~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~   72 (316)
T PHA02544         27 AADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVL   72 (316)
T ss_pred             HHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence            556666666664332 335555899999999999999999876554

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.44  E-value=0.0026  Score=55.11  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|-.|.|+||+||||||+-|.+|.
T Consensus        28 ~Ge~iaitGPSG~GKStllk~va~   51 (223)
T COG4619          28 AGEFIAITGPSGCGKSTLLKIVAS   51 (223)
T ss_pred             CCceEEEeCCCCccHHHHHHHHHh
Confidence            588999999999999999999986

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.44  E-value=0.0025  Score=53.52  Aligned_cols=30  Identities=27%  Similarity=0.236  Sum_probs=19.6

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      ..-.++.++|+|++|+|||++.+.+.+.+.
T Consensus        20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~   49 (185)
T PF13191_consen   20 QSGSPRNLLLTGESGSGKTSLLRALLDRLA   49 (185)
T ss_dssp             SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred             HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            334578999999999999999998887663

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.44  E-value=0.0027  Score=65.96  Aligned_cols=33  Identities=24%  Similarity=0.195  Sum_probs=29.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      .++.|+|.|+||+|||++|+.+|..++.+|+..
T Consensus       486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v  518 (733)
T TIGR01243       486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAV  518 (733)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence            466799999999999999999999999998754

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.43  E-value=0.0028  Score=55.48  Aligned_cols=35  Identities=26%  Similarity=0.192  Sum_probs=28.0

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSL  127 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~l  127 (278)
                      |++|+|+|+.|+||||.+..||..+.     ..++.+|..
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~   40 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY   40 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence            57899999999999999999998763     335666654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK13695 putative NTPase; Provisional

Probab=96.41  E-value=0.0032  Score=53.42  Aligned_cols=24  Identities=25%  Similarity=0.153  Sum_probs=21.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHh
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      |.|+|+|.+|+||||+++.++..+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            579999999999999999987765

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.41  E-value=0.0029  Score=54.34  Aligned_cols=24  Identities=33%  Similarity=0.378  Sum_probs=22.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|.++.|+|++||||||+.+.|+.
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G   40 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNG   40 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999999999974

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=96.41  E-value=0.003  Score=58.57  Aligned_cols=29  Identities=28%  Similarity=0.258  Sum_probs=26.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCce
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYY  121 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~  121 (278)
                      --+++|.||||-||||+|..+|..+|..+
T Consensus        52 lDHvLl~GPPGlGKTTLA~IIA~Emgvn~   80 (332)
T COG2255          52 LDHVLLFGPPGLGKTTLAHIIANELGVNL   80 (332)
T ss_pred             cCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence            45899999999999999999999999775

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.40  E-value=0.0028  Score=55.43  Aligned_cols=25  Identities=40%  Similarity=0.517  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999864

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.39  E-value=0.0029  Score=55.34  Aligned_cols=26  Identities=31%  Similarity=0.277  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|.++.|+|++||||||+.+.|+..+
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            58999999999999999999998543

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.38  E-value=0.003  Score=55.02  Aligned_cols=25  Identities=40%  Similarity=0.465  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~   50 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999999864

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=96.38  E-value=0.003  Score=65.70  Aligned_cols=33  Identities=27%  Similarity=0.306  Sum_probs=29.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      .++.|+|.|+||+|||++++.+|..++.+++..
T Consensus       211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i  243 (733)
T TIGR01243       211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISI  243 (733)
T ss_pred             CCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Confidence            467899999999999999999999999887643

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.38  E-value=0.003  Score=55.11  Aligned_cols=25  Identities=48%  Similarity=0.502  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        27 ~G~~~~l~G~nGsGKSTLl~~i~Gl   51 (214)
T TIGR02673        27 KGEFLFLTGPSGAGKTTLLKLLYGA   51 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999999753

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.36  E-value=0.0031  Score=54.89  Aligned_cols=25  Identities=32%  Similarity=0.264  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|.++.|+|++||||||+.+.|+..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~   49 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGI   49 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999999853

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.36  E-value=0.0031  Score=54.88  Aligned_cols=25  Identities=36%  Similarity=0.465  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|.++.|+|++||||||+.+.|+..
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999999854

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.33  E-value=0.0032  Score=55.84  Aligned_cols=26  Identities=19%  Similarity=0.378  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|..+.|+|++||||||+.+.|+..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999998543

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.33  E-value=0.0037  Score=56.21  Aligned_cols=26  Identities=27%  Similarity=0.192  Sum_probs=23.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      +..++|+|++|+||||+++.++..+.
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            44789999999999999999998875

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.33  E-value=0.0033  Score=54.86  Aligned_cols=25  Identities=28%  Similarity=0.317  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGL   49 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999853

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13245 AAA_19: Part of AAA domain

Probab=96.31  E-value=0.0049  Score=45.89  Aligned_cols=25  Identities=24%  Similarity=0.211  Sum_probs=18.3

Q ss_pred             CcEEEEEccCCCcHH-HHHHHHHHHh
Q 023749           93 GTSVFLVGMNNAIKT-HLGKFLADAL  117 (278)
Q Consensus        93 ~~~I~L~G~~GSGKS-TlAk~LAe~L  117 (278)
                      ....+|.|+|||||| |++..++..+
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            666777999999999 5555555443

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.30  E-value=0.0031  Score=64.70  Aligned_cols=36  Identities=19%  Similarity=0.190  Sum_probs=31.4

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      +-..-++.+|+|+||.||||+|..+|+.-||.+++.
T Consensus       322 ~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI  357 (877)
T KOG1969|consen  322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI  357 (877)
T ss_pred             CCCccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence            334566888999999999999999999999999875

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=96.30  E-value=0.0034  Score=61.70  Aligned_cols=28  Identities=25%  Similarity=0.160  Sum_probs=25.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      .++.|+|.|+||+|||++|+.||..++.
T Consensus       193 ~~~~iil~GppGtGKT~lA~~la~~l~~  220 (459)
T PRK11331        193 IKKNIILQGPPGVGKTFVARRLAYLLTG  220 (459)
T ss_pred             cCCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence            6889999999999999999999998853

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.30  E-value=0.0038  Score=53.77  Aligned_cols=26  Identities=19%  Similarity=0.176  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .+..|+|+|++||||||+.+.|...+
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            58899999999999999999998755

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.30  E-value=0.0036  Score=54.50  Aligned_cols=25  Identities=24%  Similarity=0.313  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|.++.|+|++||||||+.+.|+..
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~   49 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLL   49 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999853

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.30  E-value=0.0035  Score=55.05  Aligned_cols=25  Identities=32%  Similarity=0.357  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl   53 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGL   53 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999999853

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.29  E-value=0.0033  Score=55.10  Aligned_cols=25  Identities=40%  Similarity=0.359  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGL   49 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999754

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=96.29  E-value=0.0035  Score=55.61  Aligned_cols=25  Identities=32%  Similarity=0.311  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+.-
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (241)
T cd03256          26 PGEFVALIGPSGAGKSTLLRCLNGL   50 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999999853

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=96.28  E-value=0.0033  Score=55.72  Aligned_cols=25  Identities=32%  Similarity=0.255  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   49 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGF   49 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCC
Confidence            6889999999999999999999853

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=96.28  E-value=0.0033  Score=54.87  Aligned_cols=25  Identities=32%  Similarity=0.275  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~   48 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGL   48 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            5899999999999999999999753

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.28  E-value=0.0037  Score=55.08  Aligned_cols=26  Identities=27%  Similarity=0.285  Sum_probs=23.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            58999999999999999999998754

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.27  E-value=0.0038  Score=54.07  Aligned_cols=25  Identities=20%  Similarity=0.234  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|.++.|+|++||||||+.+.|+..
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~   47 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLL   47 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999999853

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.27  E-value=0.0038  Score=54.40  Aligned_cols=26  Identities=27%  Similarity=0.262  Sum_probs=23.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          25 DGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999998643

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.26  E-value=0.0037  Score=55.60  Aligned_cols=25  Identities=24%  Similarity=0.273  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|.++.|+|++||||||+.+.|+..
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   51 (243)
T TIGR02315        27 PGEFVAIIGPSGAGKSTLLRCINRL   51 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999854

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.25  E-value=0.0039  Score=54.66  Aligned_cols=25  Identities=32%  Similarity=0.379  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~   54 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGL   54 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999999754

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.25  E-value=0.007  Score=56.97  Aligned_cols=35  Identities=26%  Similarity=0.194  Sum_probs=28.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCch
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS  126 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~  126 (278)
                      .|.+|.|+|++|+||||++..||..+   |  ..+++.|.
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~  152 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT  152 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence            47799999999999999999999876   3  23466665

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.25  E-value=0.0039  Score=54.61  Aligned_cols=25  Identities=40%  Similarity=0.337  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGE   51 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999999853

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=96.24  E-value=0.0039  Score=55.17  Aligned_cols=26  Identities=23%  Similarity=0.222  Sum_probs=23.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+..+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          30 KGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999998644

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]

Probab=96.24  E-value=0.075  Score=47.07  Aligned_cols=21  Identities=19%  Similarity=0.254  Sum_probs=18.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .+.++|.|.+||||+++.+-.
T Consensus         3 LlaliGiPAaGKSs~c~~ilg   23 (291)
T KOG4622|consen    3 LLALIGIPAAGKSSFCRKILG   23 (291)
T ss_pred             eeeeecCcccchhHHHHHHHH
Confidence            478899999999999998753

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.24  E-value=0.0039  Score=54.14  Aligned_cols=25  Identities=44%  Similarity=0.478  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGL   49 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999999763

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK09183 transposase/IS protein; Provisional

Probab=96.24  E-value=0.0052  Score=56.09  Aligned_cols=26  Identities=27%  Similarity=0.338  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .+..++|+|++|+|||+++..|+..+
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a  126 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEA  126 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            57889999999999999999997553

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.24  E-value=0.0041  Score=52.75  Aligned_cols=25  Identities=40%  Similarity=0.312  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~   49 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGL   49 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999999753

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN02796 D-glycerate 3-kinase

Probab=96.23  E-value=0.0044  Score=58.95  Aligned_cols=37  Identities=14%  Similarity=-0.053  Sum_probs=28.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCC-----ceecCchHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRY-----YYFDSDSLV  128 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~-----~~iD~D~li  128 (278)
                      .+..|.|+|++||||||+++.|...+..     ..+..|++.
T Consensus        99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY  140 (347)
T PLN02796         99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY  140 (347)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence            4557899999999999999999988742     345556553

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=96.20  E-value=0.016  Score=58.72  Aligned_cols=34  Identities=29%  Similarity=0.249  Sum_probs=30.4

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      .-++-+.++||||+|||.+||++|-..+.||++.
T Consensus       181 kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~i  214 (596)
T COG0465         181 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI  214 (596)
T ss_pred             ccccceeEecCCCCCcHHHHHHHhcccCCCceec
Confidence            3477899999999999999999999999998763

>PRK04296 thymidine kinase; Provisional

Probab=96.20  E-value=0.0046  Score=53.62  Aligned_cols=26  Identities=19%  Similarity=-0.028  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|+.++++|+||+||||++..++.++
T Consensus         1 ~g~i~litG~~GsGKTT~~l~~~~~~   26 (190)
T PRK04296          1 MAKLEFIYGAMNSGKSTELLQRAYNY   26 (190)
T ss_pred             CcEEEEEECCCCCHHHHHHHHHHHHH
Confidence            47889999999999999999888876

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.20  E-value=0.0045  Score=52.75  Aligned_cols=24  Identities=29%  Similarity=0.342  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+.+.|+.
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G   48 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAG   48 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            688999999999999999999974

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.20  E-value=0.004  Score=50.52  Aligned_cols=23  Identities=26%  Similarity=0.244  Sum_probs=20.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHh
Q 023749           95 SVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +++|+|++|+||||+++.++..+
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHH
Confidence            37899999999999999998876

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=96.20  E-value=0.0043  Score=55.14  Aligned_cols=25  Identities=36%  Similarity=0.331  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRL   50 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999853

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.19  E-value=0.0044  Score=54.44  Aligned_cols=25  Identities=36%  Similarity=0.297  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999999853

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=96.19  E-value=0.0052  Score=52.97  Aligned_cols=48  Identities=23%  Similarity=0.308  Sum_probs=32.6

Q ss_pred             HHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCchHHHHHh
Q 023749           83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEAA  132 (278)
Q Consensus        83 ~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~li~~~~  132 (278)
                      ++.+|..  .+..++|.|++|+|||.+|..++.++   |  ..|++..+++.+..
T Consensus        39 ~~~~~~~--~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~   91 (178)
T PF01695_consen   39 AALEFIE--NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK   91 (178)
T ss_dssp             HHH-S-S--C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred             hcCCCcc--cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence            4445554  57899999999999999999998755   3  33566666665543

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>cd01394 radB RadB

Probab=96.19  E-value=0.0052  Score=53.81  Aligned_cols=38  Identities=24%  Similarity=0.216  Sum_probs=29.9

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCch
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS  126 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~  126 (278)
                      +-..|..+.|.|+|||||||+|..++...   |  ..|++++.
T Consensus        15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~   57 (218)
T cd01394          15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG   57 (218)
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence            45578999999999999999999998765   2  23666654

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=96.18  E-value=0.0043  Score=64.82  Aligned_cols=30  Identities=23%  Similarity=0.181  Sum_probs=26.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      .++|+||+|+|||++|+.||+.++.+++..
T Consensus       490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~i  519 (758)
T PRK11034        490 SFLFAGPTGVGKTEVTVQLSKALGIELLRF  519 (758)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCcEEe
Confidence            689999999999999999999999887543

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=96.18  E-value=0.0044  Score=55.21  Aligned_cols=26  Identities=31%  Similarity=0.315  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+..+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          27 SGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999999998643

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=96.18  E-value=0.0043  Score=54.48  Aligned_cols=25  Identities=28%  Similarity=0.368  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~   54 (228)
T cd03257          30 KGETLGLVGESGSGKSTLARAILGL   54 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5999999999999999999999853

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=96.18  E-value=0.0043  Score=55.11  Aligned_cols=25  Identities=32%  Similarity=0.365  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        25 KGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999999864

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2

Probab=96.17  E-value=0.0014  Score=54.49  Aligned_cols=51  Identities=16%  Similarity=0.221  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCHHHHHhh-hcCCCCCCC--hHHHHHHHH-HHhhhccc---c-CcEEEec
Q 023749          186 HGISLWIDVPPGMVARM-DHSGFPESE--VLPQLFALY-KEMRDGYA---T-ADVTVSL  236 (278)
Q Consensus       186 ~~~vV~L~a~~e~l~~R-~~r~rp~~~--~~~~l~~~~-~er~~~Y~---~-AD~vId~  236 (278)
                      ++++|||++|++++.+| .+|||+.+.  ..+.++.+. +....++.   . .-++||.
T Consensus        68 pdl~IYL~~~~e~~~~RI~kRgR~~E~~i~~~Yl~~L~~~~y~~~~~~~~~~~vl~id~  126 (146)
T PF01712_consen   68 PDLIIYLDASPETCLERIKKRGREEEKNIPLEYLERLHEEAYEDWLKKYDSTPVLVIDA  126 (146)
T ss_dssp             -SEEEEEE--HHHHHHHHHHCTTGGGTTS-HHHHHHHHHHHHCCHHSCCTTTTGCEEEE
T ss_pred             CCeEEEEeCCHHHHHHHHHHhCCchhcCCCHHHHHHHhHHHHHHHHHhCCCCceEEEEC
Confidence            57899999999999999 899998542  235555544 33334333   2 3357774

7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.17  E-value=0.0045  Score=54.89  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+..
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   58 (233)
T PRK11629         34 EGEMMAIVGSSGSGKSTLLHLLGGL   58 (233)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999999864

>PRK12377 putative replication protein; Provisional

Probab=96.16  E-value=0.0097  Score=54.12  Aligned_cols=39  Identities=26%  Similarity=0.301  Sum_probs=30.3

Q ss_pred             HHHHHHHhhhhccC--CcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           79 AVKKKAADISTELK--GTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        79 ~~~~~~~~~~~~~~--~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .++..+..++..+.  ...++|.|++|+|||+++..++..+
T Consensus        85 ~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l  125 (248)
T PRK12377         85 YALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRL  125 (248)
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            35555666664432  3689999999999999999999887

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.15  E-value=0.0046  Score=53.40  Aligned_cols=24  Identities=42%  Similarity=0.357  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|.++.|+|++||||||+.+.|+.
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          32 PGTLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999999999984

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=96.15  E-value=0.0045  Score=54.67  Aligned_cols=26  Identities=38%  Similarity=0.365  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999998643

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=96.15  E-value=0.0055  Score=50.84  Aligned_cols=24  Identities=38%  Similarity=0.337  Sum_probs=21.3

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHh
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ++|.++|+.+|||||+++.|...|
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999998766

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.14  E-value=0.0048  Score=53.22  Aligned_cols=24  Identities=38%  Similarity=0.375  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+.+.|+.
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G   47 (177)
T cd03222          24 EGEVIGIVGPNGTGKTTAVKILAG   47 (177)
T ss_pred             CCCEEEEECCCCChHHHHHHHHHc
Confidence            688999999999999999999975

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=96.14  E-value=0.0048  Score=55.00  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~   51 (242)
T PRK11124         27 QGETLVLLGPSGAGKSSLLRVLNLL   51 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999854

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=96.13  E-value=0.0047  Score=54.53  Aligned_cols=25  Identities=32%  Similarity=0.224  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   49 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGL   49 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999999854

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=96.13  E-value=0.005  Score=54.33  Aligned_cols=25  Identities=28%  Similarity=0.414  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl   59 (228)
T PRK10584         35 RGETIALIGESGSGKSTLLAILAGL   59 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999999854

>PRK08181 transposase; Validated

Probab=96.12  E-value=0.012  Score=54.14  Aligned_cols=43  Identities=26%  Similarity=0.333  Sum_probs=32.2

Q ss_pred             hhhhccCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCchHHHH
Q 023749           86 DISTELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFE  130 (278)
Q Consensus        86 ~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~li~~  130 (278)
                      +|..  .+..++|+|++|+|||.++..++..+   |  ..|++..+++.+
T Consensus       101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~  148 (269)
T PRK08181        101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK  148 (269)
T ss_pred             HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence            5654  57789999999999999999998644   4  335566555544

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.12  E-value=0.0049  Score=55.11  Aligned_cols=26  Identities=27%  Similarity=0.303  Sum_probs=23.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         28 GGAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999999998643

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=96.12  E-value=0.0049  Score=54.29  Aligned_cols=25  Identities=16%  Similarity=0.149  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|.++.|+|++||||||+.+.|+.-
T Consensus        12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl   36 (213)
T PRK15177         12 YHEHIGILAAPGSGKTTLTRLLCGL   36 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999999853

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=96.12  E-value=0.0052  Score=52.30  Aligned_cols=25  Identities=24%  Similarity=0.393  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~   51 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTGD   51 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999999753

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK06526 transposase; Provisional

Probab=96.11  E-value=0.0073  Score=55.06  Aligned_cols=31  Identities=29%  Similarity=0.211  Sum_probs=25.4

Q ss_pred             HhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .+|..  .+..++|+|++|+|||+++..|+..+
T Consensus        92 ~~fi~--~~~nlll~Gp~GtGKThLa~al~~~a  122 (254)
T PRK06526         92 LDFVT--GKENVVFLGPPGTGKTHLAIGLGIRA  122 (254)
T ss_pred             Cchhh--cCceEEEEeCCCCchHHHHHHHHHHH
Confidence            44443  46789999999999999999998754

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=96.11  E-value=0.0071  Score=54.71  Aligned_cols=35  Identities=29%  Similarity=0.249  Sum_probs=27.1

Q ss_pred             HHHHhhhhc--cCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           82 KKAADISTE--LKGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        82 ~~~~~~~~~--~~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      ++..+.+..  -...+|+|.|++|+||||+|+.+++.
T Consensus         6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~   42 (287)
T PF00931_consen    6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARD   42 (287)
T ss_dssp             HHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred             HHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccc
Confidence            344444433  35678999999999999999999977

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=96.11  E-value=0.005  Score=55.09  Aligned_cols=26  Identities=23%  Similarity=0.199  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         28 PGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999999998643

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.11  E-value=0.0051  Score=53.11  Aligned_cols=26  Identities=19%  Similarity=0.342  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999999997643

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.11  E-value=0.005  Score=55.87  Aligned_cols=24  Identities=29%  Similarity=0.391  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|-.+.|+|++||||||+-+.+|-
T Consensus        28 ~GEfvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          28 KGEFVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999999999985

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=96.10  E-value=0.005  Score=55.70  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAGF   50 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999999864

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.09  E-value=0.0052  Score=55.17  Aligned_cols=24  Identities=29%  Similarity=0.336  Sum_probs=22.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+-..++-
T Consensus        30 ~Ge~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          30 AGEFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            588999999999999999999875

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=96.09  E-value=0.0053  Score=54.30  Aligned_cols=25  Identities=24%  Similarity=0.263  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~   56 (225)
T PRK10247         32 AGEFKLITGPSGCGKSTLLKIVASL   56 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999999853

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.09  E-value=0.0047  Score=53.83  Aligned_cols=23  Identities=43%  Similarity=0.375  Sum_probs=21.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      | ++.|+|++||||||+.+.|+..
T Consensus        26 g-~~~i~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264          26 G-MYGLLGPNGAGKTTLMRILATL   48 (211)
T ss_pred             C-cEEEECCCCCCHHHHHHHHhCC
Confidence            7 8999999999999999999853

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.09  E-value=0.0054  Score=53.47  Aligned_cols=24  Identities=17%  Similarity=0.146  Sum_probs=21.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhC
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      .|+|+|++||||||+.+.|...+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            589999999999999998887664

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=96.08  E-value=0.0089  Score=62.20  Aligned_cols=35  Identities=23%  Similarity=0.209  Sum_probs=28.9

Q ss_pred             HHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        83 ~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +..+++..-...+++|+|+||+|||++++.||+++
T Consensus       193 ~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~  227 (731)
T TIGR02639       193 RTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI  227 (731)
T ss_pred             HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            45555544566789999999999999999999987

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.08  E-value=0.0055  Score=51.77  Aligned_cols=26  Identities=23%  Similarity=0.287  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999999997543

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=96.08  E-value=0.0052  Score=55.12  Aligned_cols=25  Identities=16%  Similarity=0.186  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         31 QNQVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999999999864

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=96.08  E-value=0.0053  Score=53.68  Aligned_cols=25  Identities=36%  Similarity=0.283  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+.-
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (218)
T cd03266          30 PGEVTGLLGPNGAGKTTTLRMLAGL   54 (218)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999999853

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.08  E-value=0.0054  Score=60.77  Aligned_cols=26  Identities=23%  Similarity=0.347  Sum_probs=23.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      ..++|.|+||+||||+|+.+|+.++.
T Consensus        37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962         37 HAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            45899999999999999999999875

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=96.08  E-value=0.0052  Score=54.31  Aligned_cols=26  Identities=35%  Similarity=0.322  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus         5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   30 (223)
T TIGR03771         5 KGELLGLLGPNGAGKTTLLRAILGLI   30 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999999998643

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.08  E-value=0.0061  Score=52.58  Aligned_cols=27  Identities=26%  Similarity=0.039  Sum_probs=23.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      ....|.|+|++||||||+.+.|...|.
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHh
Confidence            456889999999999999999997774

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=96.07  E-value=0.0051  Score=54.30  Aligned_cols=26  Identities=19%  Similarity=0.272  Sum_probs=23.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|.++.|+|++||||||+.+.|+..+
T Consensus        32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~   57 (226)
T cd03234          32 SGQVMAILGSSGSGKTTLLDAISGRV   57 (226)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCcc
Confidence            68899999999999999999998644

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.06  E-value=0.027  Score=58.42  Aligned_cols=33  Identities=24%  Similarity=0.292  Sum_probs=29.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      +..-|+|.||||+|||-+||++|.++.+.|++.
T Consensus       704 kRSGILLYGPPGTGKTLlAKAVATEcsL~FlSV  736 (953)
T KOG0736|consen  704 KRSGILLYGPPGTGKTLLAKAVATECSLNFLSV  736 (953)
T ss_pred             ccceeEEECCCCCchHHHHHHHHhhceeeEEee
Confidence            356699999999999999999999999999874

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=96.06  E-value=0.0055  Score=53.26  Aligned_cols=25  Identities=32%  Similarity=0.228  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl   49 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGL   49 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999999753

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>CHL00206 ycf2 Ycf2; Provisional

Probab=96.06  E-value=0.0052  Score=68.93  Aligned_cols=41  Identities=12%  Similarity=0.158  Sum_probs=33.6

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceec--CchHHH
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVF  129 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD--~D~li~  129 (278)
                      +.-.++-|+|+||||+|||.+||+||...++|++.  ..+++.
T Consensus      1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206       1626 ALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred             CCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence            33457889999999999999999999999999865  344443

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.05  E-value=0.0054  Score=54.91  Aligned_cols=26  Identities=19%  Similarity=0.217  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+..+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         28 DNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccC
Confidence            58899999999999999999998653

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=96.05  E-value=0.0063  Score=47.50  Aligned_cols=22  Identities=23%  Similarity=0.259  Sum_probs=19.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|+++|.+||||||+.+.|...
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~   22 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGG   22 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999764

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=96.05  E-value=0.0055  Score=54.58  Aligned_cols=26  Identities=31%  Similarity=0.213  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+..+
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   53 (241)
T PRK10895         28 SGEIVGLLGPNGAGKTTTFYMVVGIV   53 (241)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999998643

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=96.04  E-value=0.0056  Score=55.36  Aligned_cols=26  Identities=15%  Similarity=0.157  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|..+.|+|++||||||+.+.|+..+
T Consensus        38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         38 KNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999999998643

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=96.04  E-value=0.0055  Score=54.30  Aligned_cols=26  Identities=23%  Similarity=0.222  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+..+
T Consensus        11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770        11 RGEVLALVGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999999998643

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=96.04  E-value=0.0061  Score=51.67  Aligned_cols=25  Identities=20%  Similarity=0.397  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+..
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~   51 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGL   51 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            5889999999999999999999864

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.03  E-value=0.0058  Score=52.27  Aligned_cols=26  Identities=23%  Similarity=0.186  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999999998643

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=96.03  E-value=0.0057  Score=54.43  Aligned_cols=26  Identities=19%  Similarity=0.301  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+..+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493         26 QGEVVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999998643

>PRK10908 cell division protein FtsE; Provisional

Probab=96.03  E-value=0.0058  Score=53.72  Aligned_cols=25  Identities=32%  Similarity=0.426  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~   51 (222)
T PRK10908         27 PGEMAFLTGHSGAGKSTLLKLICGI   51 (222)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999753

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=96.03  E-value=0.0091  Score=54.15  Aligned_cols=42  Identities=17%  Similarity=0.178  Sum_probs=32.9

Q ss_pred             cHHHHHHHHhhhhcc--CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           77 SFAVKKKAADISTEL--KGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        77 ~~~~~~~~~~~~~~~--~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      ...+.+...++...+  .+..|+++|++||||||+.+.|.+.+.
T Consensus       109 ~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~  152 (270)
T PF00437_consen  109 SGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIP  152 (270)
T ss_dssp             THHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred             chhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcc
Confidence            344555666666655  588999999999999999999988763

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK14974 cell division protein FtsY; Provisional

Probab=96.02  E-value=0.0098  Score=56.46  Aligned_cols=36  Identities=28%  Similarity=0.247  Sum_probs=27.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCchH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSL  127 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~l  127 (278)
                      .+..|+|+|++|+||||++..||..+   |..  ++++|.+
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~  179 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF  179 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence            36789999999999999888887655   433  4666643

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=96.02  E-value=0.0057  Score=54.88  Aligned_cols=26  Identities=31%  Similarity=0.286  Sum_probs=23.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+..+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        28 PGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999998644

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.01  E-value=0.0059  Score=55.09  Aligned_cols=26  Identities=15%  Similarity=0.134  Sum_probs=23.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         37 ENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            58999999999999999999998654

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=96.01  E-value=0.006  Score=54.21  Aligned_cols=26  Identities=19%  Similarity=0.304  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+..+
T Consensus        10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   35 (230)
T TIGR01184        10 QGEFISLIGHSGCGKSTLLNLISGLA   35 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999999998543

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=96.01  E-value=0.006  Score=53.77  Aligned_cols=26  Identities=35%  Similarity=0.336  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|..+.|+|++||||||+.+.|+..+
T Consensus        28 ~G~~~~i~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254          28 PGETVAIVGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            68899999999999999999998644

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=96.01  E-value=0.0063  Score=51.95  Aligned_cols=25  Identities=40%  Similarity=0.317  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~   48 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGL   48 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999999753

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.00  E-value=0.0064  Score=51.23  Aligned_cols=24  Identities=38%  Similarity=0.427  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+.+.|+.
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G   48 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSG   48 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999999999975

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=96.00  E-value=0.0049  Score=56.09  Aligned_cols=38  Identities=26%  Similarity=0.209  Sum_probs=31.0

Q ss_pred             HHHhhh-hccCCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           83 KAADIS-TELKGTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        83 ~~~~~~-~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      |+.+.. +--.|.++.|+|++|+||||+++.++..+...
T Consensus         5 ~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~   43 (249)
T cd01128           5 RVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKN   43 (249)
T ss_pred             hheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence            444444 66689999999999999999999999876543

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=96.00  E-value=0.0062  Score=52.66  Aligned_cols=25  Identities=32%  Similarity=0.339  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (198)
T TIGR01189        25 AGEALQVTGPNGIGKTTLLRILAGL   49 (198)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999753

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=96.00  E-value=0.0046  Score=55.81  Aligned_cols=22  Identities=27%  Similarity=0.243  Sum_probs=19.1

Q ss_pred             EEccCCCcHHHHHHHHHHHhCC
Q 023749           98 LVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        98 L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      ++||+||||||+++.+++-+..
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~   22 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLES   22 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHh
Confidence            6899999999999999998743

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=95.99  E-value=0.0059  Score=54.12  Aligned_cols=25  Identities=28%  Similarity=0.373  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|.++.|+|++||||||+.+.|+..
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   48 (232)
T PRK10771         24 RGERVAILGPSGAGKSTLLNLIAGF   48 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999764

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.99  E-value=0.0064  Score=52.74  Aligned_cols=25  Identities=40%  Similarity=0.383  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~   50 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGL   50 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999999753

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=95.99  E-value=0.012  Score=54.03  Aligned_cols=41  Identities=17%  Similarity=0.113  Sum_probs=30.7

Q ss_pred             cHHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           77 SFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ...+++....+...-....++|+|++|+||||+++.+++.+
T Consensus        22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l   62 (319)
T PRK00440         22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL   62 (319)
T ss_pred             cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34455555555544344568999999999999999999987

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=95.99  E-value=0.0052  Score=54.95  Aligned_cols=35  Identities=17%  Similarity=0.094  Sum_probs=27.2

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF  129 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~  129 (278)
                      +..++|.|.||+||||+|+.|+.  ...+++.|.-..
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~   46 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSK   46 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccch
Confidence            46799999999999999999963  355666666433

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=95.99  E-value=0.006  Score=54.77  Aligned_cols=25  Identities=24%  Similarity=0.336  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (252)
T TIGR03005        25 AGEKVALIGPSGSGKSTILRILMTL   49 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999864

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=95.99  E-value=0.0067  Score=51.35  Aligned_cols=26  Identities=31%  Similarity=0.333  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        27 ~G~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          27 PGEKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            69999999999999999999997643

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=95.98  E-value=0.0061  Score=54.98  Aligned_cols=26  Identities=31%  Similarity=0.282  Sum_probs=23.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (258)
T PRK11701         31 PGEVLGIVGESGSGKTTLLNALSARL   56 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            69999999999999999999998644

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.98  E-value=0.0061  Score=54.69  Aligned_cols=25  Identities=16%  Similarity=0.127  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|.++.|+|++||||||+.+.|+..
T Consensus        29 ~Ge~~~l~G~nGsGKSTLl~~l~G~   53 (253)
T PRK14267         29 QNGVFALMGPSGCGKSTLLRTFNRL   53 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999999999999999864

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=95.98  E-value=0.0089  Score=52.29  Aligned_cols=34  Identities=18%  Similarity=0.050  Sum_probs=28.1

Q ss_pred             HhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      .+++..=..++|.|+|++||||||+.+.+.+.++
T Consensus        14 ~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        14 RERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             HHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4555555678999999999999999999988765

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=95.98  E-value=0.0063  Score=54.27  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (242)
T cd03295          26 KGEFLVLIGPSGSGKTTTMKMINRLI   51 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999999998643

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=95.97  E-value=0.0064  Score=53.24  Aligned_cols=25  Identities=32%  Similarity=0.367  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~i~G~   53 (220)
T cd03245          29 AGEKVAIIGRVGSGKSTLLKLLAGL   53 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            6999999999999999999999754

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=95.97  E-value=0.0084  Score=44.24  Aligned_cols=29  Identities=28%  Similarity=0.192  Sum_probs=23.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHh---CCceec
Q 023749           95 SVFLVGMNNAIKTHLGKFLADAL---RYYYFD  123 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD  123 (278)
                      .|++.|..|+||||++..|+..+   |++.+-
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~   32 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLL   32 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            37888999999999999999887   555433

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.97  E-value=0.0064  Score=53.34  Aligned_cols=25  Identities=36%  Similarity=0.403  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~i~G~   60 (214)
T PRK13543         36 AGEALLVQGDNGAGKTTLLRVLAGL   60 (214)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999753

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=95.97  E-value=0.0058  Score=54.82  Aligned_cols=25  Identities=32%  Similarity=0.224  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (255)
T PRK11300         30 EQEIVSLIGPNGAGKTTVFNCLTGF   54 (255)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999864

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.97  E-value=0.0063  Score=54.57  Aligned_cols=25  Identities=16%  Similarity=0.129  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14255         30 QNEITALIGPSGCGKSTYLRTLNRM   54 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999999863

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=95.97  E-value=0.0065  Score=52.94  Aligned_cols=25  Identities=24%  Similarity=0.295  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|.++.|+|++||||||+.+.|+..
T Consensus        23 ~Ge~~~l~G~nGsGKSTLl~~l~gl   47 (211)
T cd03298          23 QGEITAIVGPSGSGKSTLLNLIAGF   47 (211)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999754

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.97  E-value=0.0063  Score=54.48  Aligned_cols=25  Identities=20%  Similarity=0.179  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|.++.|+|++||||||+.+.|+..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14262         28 KNQITAIIGPSGCGKTTLLRSINRM   52 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999999953

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=95.96  E-value=0.0063  Score=53.90  Aligned_cols=25  Identities=36%  Similarity=0.473  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        47 ~Ge~~~i~G~nGsGKSTLl~~l~G~   71 (224)
T cd03220          47 RGERIGLIGRNGAGKSTLLRLLAGI   71 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999853

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13768 GTPase; Provisional

Probab=95.96  E-value=0.0079  Score=54.63  Aligned_cols=34  Identities=35%  Similarity=0.371  Sum_probs=26.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCch
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDS  126 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~  126 (278)
                      .+.|++.|++|+||||++..++..+   |.+  ++|.|.
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~   40 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP   40 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence            4689999999999999999888766   333  556654

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=95.96  E-value=0.0078  Score=52.28  Aligned_cols=38  Identities=24%  Similarity=0.246  Sum_probs=30.3

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCch
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS  126 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~  126 (278)
                      +-.+|..+.|+|+||||||+++..++...   |  ..|+|++.
T Consensus         8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~   50 (209)
T TIGR02237         8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG   50 (209)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            44578999999999999999999988643   3  45677764

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=95.96  E-value=0.0065  Score=54.38  Aligned_cols=25  Identities=24%  Similarity=0.208  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (247)
T TIGR00972        26 KNQVTALIGPSGCGKSTLLRSLNRM   50 (247)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999999854

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=95.95  E-value=0.0066  Score=52.32  Aligned_cols=24  Identities=17%  Similarity=0.019  Sum_probs=21.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+.+.+.-
T Consensus        20 ~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          20 LNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhh
Confidence            588999999999999999998853

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=95.95  E-value=0.0057  Score=53.30  Aligned_cols=26  Identities=27%  Similarity=0.259  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (202)
T cd03233          32 PGEMVLVLGRPGSGCSTLLKALANRT   57 (202)
T ss_pred             CCcEEEEECCCCCCHHHHHHHhcccC
Confidence            68899999999999999999998643

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=95.95  E-value=0.0066  Score=53.11  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~   47 (213)
T TIGR01277        23 DGEIVAIMGPSGAGKSTLLNLIAGF   47 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            6999999999999999999999854

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=95.95  E-value=0.0066  Score=53.68  Aligned_cols=26  Identities=27%  Similarity=0.342  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|..+.|+|++||||||+.+.|+..+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (234)
T cd03251          27 AGETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999999998644

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.95  E-value=0.007  Score=57.76  Aligned_cols=26  Identities=27%  Similarity=0.395  Sum_probs=23.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      ..++|+|++|+||||+|+.+|+.++.
T Consensus        39 h~~L~~Gp~G~GKTtla~~la~~l~c   64 (363)
T PRK14961         39 HAWLLSGTRGVGKTTIARLLAKSLNC   64 (363)
T ss_pred             eEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            35789999999999999999999874

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.95  E-value=0.0068  Score=52.92  Aligned_cols=25  Identities=32%  Similarity=0.426  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~   51 (207)
T PRK13539         27 AGEALVLTGPNGSGKTTLLRLIAGL   51 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999764

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=95.94  E-value=0.0066  Score=53.85  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (237)
T cd03252          27 PGEVVGIVGRSGSGKSTLTKLIQRFY   52 (237)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            68999999999999999999998643

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=95.94  E-value=0.0065  Score=54.79  Aligned_cols=25  Identities=12%  Similarity=0.111  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~laGl   53 (258)
T PRK14241         29 PRSVTAFIGPSGCGKSTVLRTLNRM   53 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999999999999999864

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=95.94  E-value=0.0072  Score=55.61  Aligned_cols=36  Identities=28%  Similarity=0.267  Sum_probs=28.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCchH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSL  127 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~l  127 (278)
                      .++.|+|+|++|+||||++..||..+   |..  ++++|.+
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~  111 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF  111 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence            35789999999999999999998776   433  4777753

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=95.94  E-value=0.0068  Score=57.97  Aligned_cols=29  Identities=21%  Similarity=0.152  Sum_probs=26.1

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      ..|..|.|+|.+||||||+++.|.++|.-
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~   31 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLSE   31 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence            46889999999999999999999998863

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.93  E-value=0.0067  Score=54.43  Aligned_cols=26  Identities=8%  Similarity=0.111  Sum_probs=23.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         29 ENSVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            68999999999999999999998754

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=95.93  E-value=0.0067  Score=54.78  Aligned_cols=26  Identities=31%  Similarity=0.314  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|.++.|+|++||||||+.+.|+..+
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~   49 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVL   49 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999999998643

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.92  E-value=0.0069  Score=54.29  Aligned_cols=25  Identities=16%  Similarity=0.146  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+..
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   53 (251)
T PRK14251         29 EKELTALIGPSGCGKSTFLRCLNRM   53 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhc
Confidence            6889999999999999999999864

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=95.92  E-value=0.0076  Score=51.61  Aligned_cols=26  Identities=19%  Similarity=0.163  Sum_probs=22.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      .++|+|++|||||++|..++...+-+
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~~~~   26 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAELGGP   26 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            37899999999999999999876633

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=95.92  E-value=0.0071  Score=52.49  Aligned_cols=25  Identities=32%  Similarity=0.251  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.++..
T Consensus        30 ~G~~~~i~G~nG~GKSTLl~~i~G~   54 (204)
T cd03250          30 KGELVAIVGPVGSGKSSLLSALLGE   54 (204)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCc
Confidence            6999999999999999999999753

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=95.92  E-value=0.0065  Score=57.68  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=22.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|-.++|.||+||||||+-+.+|-
T Consensus        28 ~Gef~vllGPSGcGKSTlLr~IAG   51 (338)
T COG3839          28 DGEFVVLLGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            478899999999999999999984

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=95.92  E-value=0.0071  Score=53.00  Aligned_cols=25  Identities=28%  Similarity=0.171  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~G~   53 (221)
T cd03244          29 PGEKVGIVGRTGSGKSSLLLALFRL   53 (221)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999999853

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=95.91  E-value=0.0062  Score=55.24  Aligned_cols=25  Identities=32%  Similarity=0.341  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   60 (265)
T PRK10575         36 AGKVTGLIGHNGSGKSTLLKMLGRH   60 (265)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            5899999999999999999999854

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=95.91  E-value=0.0069  Score=55.06  Aligned_cols=26  Identities=31%  Similarity=0.298  Sum_probs=23.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+..+
T Consensus        37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~   62 (257)
T PRK11247         37 AGQFVAVVGRSGCGKSTLLRLLAGLE   62 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999999998643

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=95.91  E-value=0.0071  Score=53.70  Aligned_cols=26  Identities=27%  Similarity=0.322  Sum_probs=23.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   53 (238)
T cd03249          28 PGKTVALVGSSGCGKSTVVSLLERFY   53 (238)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence            68999999999999999999998643

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=95.90  E-value=0.051  Score=52.70  Aligned_cols=38  Identities=21%  Similarity=0.068  Sum_probs=30.1

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhC-------CceecCchHH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV  128 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg-------~~~iD~D~li  128 (278)
                      .++++|.|+||-|+||||.-..||.++.       ..++.+|.+.
T Consensus       201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYR  245 (407)
T COG1419         201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYR  245 (407)
T ss_pred             ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccch
Confidence            3689999999999999987777777664       4467888764

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=95.90  E-value=0.0087  Score=55.70  Aligned_cols=34  Identities=21%  Similarity=-0.074  Sum_probs=27.7

Q ss_pred             HHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        84 ~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      -.+...+-.+..|.|+|.|||||||+.+.+...+
T Consensus        95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l  128 (290)
T PRK10463         95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL  128 (290)
T ss_pred             HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3444455678899999999999999998888775

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=95.90  E-value=0.0072  Score=49.97  Aligned_cols=25  Identities=40%  Similarity=0.436  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~   49 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGE   49 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            6889999999999999999999753

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.90  E-value=0.0071  Score=54.92  Aligned_cols=25  Identities=16%  Similarity=0.150  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   70 (268)
T PRK14248         46 KHAVTALIGPSGCGKSTFLRSINRM   70 (268)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999999863

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=95.89  E-value=0.0078  Score=55.55  Aligned_cols=36  Identities=25%  Similarity=0.204  Sum_probs=28.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh----C-C--ceecCchH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL----R-Y--YYFDSDSL  127 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L----g-~--~~iD~D~l  127 (278)
                      .+.+|+|+|+.|+||||++..||..+    | .  .+++.|..
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~  235 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY  235 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence            46689999999999999999998765    3 2  25677763

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.88  E-value=0.0071  Score=59.94  Aligned_cols=28  Identities=25%  Similarity=0.355  Sum_probs=24.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      +..++|+|++|+||||+|+.||+.++..
T Consensus        40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce   67 (484)
T PRK14956         40 GHAYIFFGPRGVGKTTIARILAKRLNCE   67 (484)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence            4458999999999999999999999864

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=95.88  E-value=0.25  Score=43.86  Aligned_cols=55  Identities=22%  Similarity=0.240  Sum_probs=37.1

Q ss_pred             ccHHHHHHHHhhhhccC--CcEEEEEccCCCcHHHHHHHHHHHh-----C--CceecCchHHHH
Q 023749           76 PSFAVKKKAADISTELK--GTSVFLVGMNNAIKTHLGKFLADAL-----R--YYYFDSDSLVFE  130 (278)
Q Consensus        76 ~~~~~~~~~~~~~~~~~--~~~I~L~G~~GSGKSTlAk~LAe~L-----g--~~~iD~D~li~~  130 (278)
                      ........+..++....  ...++|.|++|+|||.+.+.++.++     +  +.+++.+++..+
T Consensus        15 ~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~   78 (219)
T PF00308_consen   15 SNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE   78 (219)
T ss_dssp             TTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH
Confidence            34445555666665432  2468999999999999999998754     2  346666665543

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.88  E-value=0.0075  Score=58.87  Aligned_cols=33  Identities=30%  Similarity=0.322  Sum_probs=30.2

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      |...+|+|.||.|||||-+|+-||+-|+.||.=
T Consensus       224 LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaI  256 (564)
T KOG0745|consen  224 LEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAI  256 (564)
T ss_pred             eecccEEEECCCCCchhHHHHHHHHHhCCCeEE
Confidence            567899999999999999999999999999753

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=95.88  E-value=0.0075  Score=53.12  Aligned_cols=26  Identities=23%  Similarity=0.264  Sum_probs=23.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   64 (226)
T cd03248          39 PGEVTALVGPSGSGKSTVVALLENFY   64 (226)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            68999999999999999999998643

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13531 regulatory ATPase RavA; Provisional

Probab=95.88  E-value=0.0067  Score=60.18  Aligned_cols=30  Identities=33%  Similarity=0.471  Sum_probs=27.2

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      -.+.+..|+|.|+||+|||++|+.|++..+
T Consensus        35 aalag~hVLL~GpPGTGKT~LAraLa~~~~   64 (498)
T PRK13531         35 AALSGESVFLLGPPGIAKSLIARRLKFAFQ   64 (498)
T ss_pred             HHccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence            457899999999999999999999999765

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=95.87  E-value=0.0075  Score=53.05  Aligned_cols=26  Identities=35%  Similarity=0.249  Sum_probs=23.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+..+
T Consensus        33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   58 (224)
T TIGR02324        33 AGECVALSGPSGAGKSTLLKSLYANY   58 (224)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999998643

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=95.87  E-value=0.0074  Score=53.42  Aligned_cols=26  Identities=23%  Similarity=0.289  Sum_probs=23.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~   51 (236)
T cd03253          26 AGKKVAIVGPSGSGKSTILRLLFRFY   51 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999999998643

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=95.87  E-value=0.0071  Score=55.05  Aligned_cols=26  Identities=19%  Similarity=0.330  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|.++.|+|++||||||+.+.|+..+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (269)
T PRK11831         32 RGKITAIMGPSGIGKTTLLRLIGGQI   57 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999999998643

>PRK10865 protein disaggregation chaperone; Provisional

Probab=95.87  E-value=0.0099  Score=62.99  Aligned_cols=38  Identities=16%  Similarity=0.149  Sum_probs=31.2

Q ss_pred             HHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        80 ~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .-++..+++..-...+++|+|+||+|||++++.||..+
T Consensus       186 ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i  223 (857)
T PRK10865        186 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI  223 (857)
T ss_pred             HHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence            34556666655566789999999999999999999987

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=95.86  E-value=0.0073  Score=54.06  Aligned_cols=24  Identities=17%  Similarity=0.153  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|.++.|+|++||||||+.+.|+.
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G   53 (252)
T PRK14239         30 PNEITALIGPSGSGKSTLLRSINR   53 (252)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999999975

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=95.86  E-value=0.0078  Score=52.33  Aligned_cols=25  Identities=28%  Similarity=0.170  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        33 ~G~~~~i~G~nGsGKSTLl~~l~Gl   57 (207)
T cd03369          33 AGEKIGIVGRTGAGKSTLILALFRF   57 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999999753

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=95.86  E-value=0.0067  Score=60.30  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+++.|..
T Consensus       360 ~G~~vaIvG~SGsGKSTLl~lL~g  383 (529)
T TIGR02868       360 PGERVAILGPSGSGKSTLLMLLTG  383 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            699999999999999999999964

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.86  E-value=0.0065  Score=57.97  Aligned_cols=42  Identities=21%  Similarity=0.221  Sum_probs=33.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC--chHHHHHhC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG  133 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~--D~li~~~~g  133 (278)
                      .++.|++.||||+|||-+|+++|++.|..|+..  ..+..+.+|
T Consensus       126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfg  169 (386)
T KOG0737|consen  126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFG  169 (386)
T ss_pred             CCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHH
Confidence            366799999999999999999999999998764  334444443

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.85  E-value=0.0077  Score=53.92  Aligned_cols=25  Identities=12%  Similarity=0.173  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+.-
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (246)
T PRK14269         27 QNKITALIGASGCGKSTFLRCFNRM   51 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999999864

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.84  E-value=0.0078  Score=53.98  Aligned_cols=25  Identities=12%  Similarity=0.135  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        30 ~Ge~~~I~G~nGsGKSTLl~~i~G~   54 (251)
T PRK14244         30 KREVTAFIGPSGCGKSTFLRCFNRM   54 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999999999864

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=95.84  E-value=0.0079  Score=52.31  Aligned_cols=25  Identities=40%  Similarity=0.349  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~   50 (204)
T PRK13538         26 AGELVQIEGPNGAGKTSLLRILAGL   50 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999999764

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.84  E-value=0.0077  Score=54.77  Aligned_cols=25  Identities=28%  Similarity=0.404  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl   58 (269)
T PRK13648         34 KGQWTSIVGHNGSGKSTIAKLMIGI   58 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999999864

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=95.83  E-value=0.0075  Score=54.97  Aligned_cols=25  Identities=36%  Similarity=0.329  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|.++.|+|++||||||+.+.|+..
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   56 (272)
T PRK15056         32 GGSIAALVGVNGSGKSTLFKALMGF   56 (272)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999864

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.83  E-value=0.0076  Score=55.44  Aligned_cols=26  Identities=12%  Similarity=0.215  Sum_probs=23.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+..+
T Consensus        36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   61 (289)
T PRK13645         36 KNKVTCVIGTTGSGKSTMIQLTNGLI   61 (289)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999999998643

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.83  E-value=0.0072  Score=55.00  Aligned_cols=26  Identities=31%  Similarity=0.161  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (271)
T PRK13638         26 LSPVTGLVGANGCGKSTLFMNLSGLL   51 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            58899999999999999999998643

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.83  E-value=0.0077  Score=54.07  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+.+.|+.
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14261         31 KNRVTALIGPSGCGKSTLLRCFNR   54 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            588999999999999999999985

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=95.82  E-value=0.008  Score=53.61  Aligned_cols=25  Identities=40%  Similarity=0.340  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl   70 (236)
T cd03267          46 KGEIVGFIGPNGAGKTTTLKILSGL   70 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999853

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=95.81  E-value=0.0082  Score=58.65  Aligned_cols=37  Identities=16%  Similarity=-0.022  Sum_probs=28.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLV  128 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li  128 (278)
                      .+.+|.|.|++||||||+++.|...+.     ...++.|++.
T Consensus       211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY  252 (460)
T PLN03046        211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY  252 (460)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence            457888999999999999999987663     3345666654

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=95.81  E-value=0.01  Score=55.34  Aligned_cols=26  Identities=23%  Similarity=0.312  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .+..|+++|++||||||+.+.|...+
T Consensus       131 ~~~~ilI~G~tGSGKTTll~al~~~i  156 (299)
T TIGR02782       131 ARKNILVVGGTGSGKTTLANALLAEI  156 (299)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998876

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=95.81  E-value=0.007  Score=59.36  Aligned_cols=36  Identities=19%  Similarity=0.288  Sum_probs=28.6

Q ss_pred             cHHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           77 SFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +..|++|-.+=+     .-|++.|+||+||||+|++||+-+
T Consensus       252 ~dkl~eRL~era-----eGILIAG~PGaGKsTFaqAlAefy  287 (604)
T COG1855         252 SDKLKERLEERA-----EGILIAGAPGAGKSTFAQALAEFY  287 (604)
T ss_pred             CHHHHHHHHhhh-----cceEEecCCCCChhHHHHHHHHHH
Confidence            466777655532     358999999999999999999976

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.81  E-value=0.0079  Score=54.80  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   62 (269)
T PRK14259         38 RGKVTALIGPSGCGKSTVLRSLNRM   62 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999999864

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=95.81  E-value=0.0082  Score=54.59  Aligned_cols=26  Identities=15%  Similarity=0.124  Sum_probs=23.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|.++.|+|++||||||+.+.|+..+
T Consensus        44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   69 (267)
T PRK14235         44 EKTVTAFIGPSGCGKSTFLRCLNRMN   69 (267)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            68999999999999999999998754

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.81  E-value=0.0082  Score=53.72  Aligned_cols=26  Identities=19%  Similarity=0.124  Sum_probs=23.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|.++.|+|++||||||+.+.|+..+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (249)
T PRK14253         28 ARQVTALIGPSGCGKSTLLRCLNRMN   53 (249)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            58899999999999999999998643

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=95.81  E-value=0.0081  Score=54.15  Aligned_cols=26  Identities=12%  Similarity=0.161  Sum_probs=23.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+..+
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~   55 (257)
T PRK10619         30 AGDVISIIGSSGSGKSTFLRCINFLE   55 (257)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999998654

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.81  E-value=0.0081  Score=53.85  Aligned_cols=25  Identities=12%  Similarity=0.211  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14245         28 EKSVVAFIGPSGCGKSTFLRLFNRM   52 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhh
Confidence            5899999999999999999999853

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=95.81  E-value=0.008  Score=54.76  Aligned_cols=26  Identities=15%  Similarity=0.354  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+..+
T Consensus        49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~   74 (269)
T cd03294          49 EGEIFVIMGLSGSGKSTLLRCINRLI   74 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999999998643

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=95.80  E-value=0.0074  Score=54.05  Aligned_cols=24  Identities=33%  Similarity=0.423  Sum_probs=22.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+.+.|+.
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~i~G   55 (252)
T CHL00131         32 KGEIHAIMGPNGSGKSTLSKVIAG   55 (252)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcC
Confidence            689999999999999999999985

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=95.80  E-value=0.0084  Score=59.93  Aligned_cols=28  Identities=21%  Similarity=0.304  Sum_probs=25.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      +..++|+|++|+||||+|+.+|+.++..
T Consensus        43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~   70 (507)
T PRK06645         43 AGGYLLTGIRGVGKTTSARIIAKAVNCS   70 (507)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            4578999999999999999999999864

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.80  E-value=0.085  Score=54.32  Aligned_cols=26  Identities=27%  Similarity=0.402  Sum_probs=23.8

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      ..++|+|++|+||||+|+.|++.|++
T Consensus        39 HA~LFtGP~GvGKTTLAriLAkaLnC   64 (700)
T PRK12323         39 HAYLFTGTRGVGKTTLSRILAKSLNC   64 (700)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            35788999999999999999999987

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.79  E-value=0.0081  Score=54.73  Aligned_cols=26  Identities=31%  Similarity=0.474  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|.++.|+|++||||||+.+.|+..+
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (271)
T PRK13632         34 EGEYVAILGHNGSGKSTISKILTGLL   59 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999999998643

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=95.79  E-value=0.0083  Score=50.58  Aligned_cols=23  Identities=39%  Similarity=0.345  Sum_probs=20.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHh
Q 023749           95 SVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|.|+|++||||||++..|.+.+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999876

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=95.78  E-value=0.0084  Score=54.90  Aligned_cols=36  Identities=31%  Similarity=0.317  Sum_probs=29.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh----CCceecCchH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL----RYYYFDSDSL  127 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L----g~~~iD~D~l  127 (278)
                      +|..+.|+||.||||||+-|.|+.-+    |-.++|.-++
T Consensus        27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i   66 (258)
T COG1120          27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI   66 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCch
Confidence            58999999999999999999999855    4456665443

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=95.78  E-value=0.0091  Score=62.10  Aligned_cols=35  Identities=23%  Similarity=0.275  Sum_probs=29.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCch
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS  126 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~  126 (278)
                      ....++|.|+||+||||+|+.+++.++..++..+.
T Consensus        51 ~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna   85 (725)
T PRK13341         51 RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA   85 (725)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence            34578999999999999999999998877765543

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.77  E-value=0.0086  Score=53.82  Aligned_cols=26  Identities=19%  Similarity=0.153  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+..+
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (254)
T PRK14273         32 KNSITALIGPSGCGKSTFLRTLNRMN   57 (254)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999999998643

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=95.77  E-value=0.0085  Score=54.46  Aligned_cols=26  Identities=38%  Similarity=0.347  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+..+
T Consensus        25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~   50 (255)
T cd03236          25 EGQVLGLVGPNGIGKSTALKILAGKL   50 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            69999999999999999999997643

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=95.77  E-value=0.0086  Score=54.15  Aligned_cols=25  Identities=28%  Similarity=0.313  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.++..
T Consensus        29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl   53 (251)
T PRK09544         29 PGKILTLLGPNGAGKSTLVRVVLGL   53 (251)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999854

>TIGR00101 ureG urease accessory protein UreG

Probab=95.77  E-value=0.0096  Score=52.16  Aligned_cols=26  Identities=31%  Similarity=0.190  Sum_probs=22.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      +..|.|+|++||||||+.+.+.+.+.
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~   26 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALR   26 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence            35799999999999999999988753

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=95.76  E-value=0.0086  Score=51.85  Aligned_cols=26  Identities=27%  Similarity=0.200  Sum_probs=23.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|.++.|+|++||||||+.+.|+..+
T Consensus        34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          34 PGELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999999998644

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=95.76  E-value=0.0089  Score=52.40  Aligned_cols=25  Identities=20%  Similarity=0.183  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|.++.|+|++||||||+.+.|+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~i~G~   50 (218)
T cd03290          26 TGQLTMIVGQVGCGKSSLLLAILGE   50 (218)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999999854

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.76  E-value=0.0082  Score=54.84  Aligned_cols=26  Identities=15%  Similarity=0.261  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+..+
T Consensus        32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~   57 (280)
T PRK13649         32 DGSYTAFIGHTGSGKSTIMQLLNGLH   57 (280)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999999998643

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=95.76  E-value=0.016  Score=55.14  Aligned_cols=27  Identities=22%  Similarity=0.155  Sum_probs=23.8

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      -.+..++|.|++|+|||++++.+++.+
T Consensus        53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l   79 (394)
T PRK00411         53 SRPLNVLIYGPPGTGKTTTVKKVFEEL   79 (394)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            345789999999999999999999876

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=95.75  E-value=0.0087  Score=53.57  Aligned_cols=25  Identities=16%  Similarity=0.163  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14240         28 ENQVTALIGPSGCGKSTFLRTLNRM   52 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999999999999999863

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.75  E-value=0.08  Score=45.46  Aligned_cols=39  Identities=13%  Similarity=0.123  Sum_probs=28.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh--CCceecCchHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEA  131 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L--g~~~iD~D~li~~~  131 (278)
                      ++.-++.|+.||||||+-..+-..+  +..+++.|.+..+.
T Consensus         2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i   42 (187)
T COG4185           2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQI   42 (187)
T ss_pred             ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhc
Confidence            3456777999999999876543333  57789999887554

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=95.75  E-value=0.0079  Score=53.64  Aligned_cols=25  Identities=28%  Similarity=0.296  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (248)
T PRK09580         26 PGEVHAIMGPNGSGKSTLSATLAGR   50 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            5899999999999999999999864

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=95.75  E-value=0.0088  Score=53.88  Aligned_cols=25  Identities=20%  Similarity=0.131  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+..
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   52 (254)
T PRK10418         28 RGRVLALVGGSGSGKSLTCAAALGI   52 (254)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999999864

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=95.74  E-value=0.009  Score=54.32  Aligned_cols=26  Identities=19%  Similarity=0.110  Sum_probs=23.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+..+
T Consensus        45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         45 KNKITALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            68999999999999999999998754

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.74  E-value=0.0097  Score=57.29  Aligned_cols=36  Identities=25%  Similarity=0.193  Sum_probs=28.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh----C---CceecCchH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL----R---YYYFDSDSL  127 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L----g---~~~iD~D~l  127 (278)
                      .+.+|+|+|++|+||||++..||..+    |   .-++..|.+
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~  178 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY  178 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            47899999999999999999999753    3   235666665

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=95.74  E-value=0.0087  Score=54.10  Aligned_cols=26  Identities=27%  Similarity=0.361  Sum_probs=23.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+..+
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   54 (262)
T PRK09984         29 HGEMVALLGPSGSGKSTLLRHLSGLI   54 (262)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccC
Confidence            68999999999999999999998654

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.74  E-value=0.0091  Score=53.56  Aligned_cols=26  Identities=15%  Similarity=0.100  Sum_probs=23.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+..+
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14249         29 ERQITAIIGPSGCGKSTLLRALNRMN   54 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999999998754

>PRK06921 hypothetical protein; Provisional

Probab=95.74  E-value=0.015  Score=53.37  Aligned_cols=39  Identities=26%  Similarity=0.288  Sum_probs=30.5

Q ss_pred             HHHHHHHhhhhcc------CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           79 AVKKKAADISTEL------KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        79 ~~~~~~~~~~~~~------~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .++..+.++....      .+..++|.|++|+|||.++..++..+
T Consensus        97 ~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia~~l  141 (266)
T PRK06921         97 DAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAANEL  141 (266)
T ss_pred             HHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            3455566666533      46789999999999999999998865

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=95.74  E-value=0.0087  Score=54.49  Aligned_cols=25  Identities=28%  Similarity=0.452  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   61 (268)
T PRK10419         37 SGETVALLGRSGCGKSTLARLLVGL   61 (268)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999853

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.73  E-value=0.0092  Score=53.52  Aligned_cols=25  Identities=16%  Similarity=0.173  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~G~   53 (251)
T PRK14270         29 ENKITALIGPSGCGKSTFLRCLNRM   53 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999999864

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.73  E-value=0.009  Score=53.94  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl   61 (258)
T PRK14268         37 KNSVTALIGPSGCGKSTFIRCLNRM   61 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999999853

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=95.73  E-value=0.0085  Score=62.35  Aligned_cols=34  Identities=32%  Similarity=0.306  Sum_probs=27.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCcee--cCchHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLV  128 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~i--D~D~li  128 (278)
                      .++|+||+|+|||++|+.||+.++.+++  |+..+.
T Consensus       486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~  521 (731)
T TIGR02639       486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYM  521 (731)
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhh
Confidence            4789999999999999999999987654  444443

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=95.73  E-value=0.009  Score=54.47  Aligned_cols=26  Identities=15%  Similarity=0.143  Sum_probs=23.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~   74 (271)
T PRK14238         49 ENEVTAIIGPSGCGKSTYIKTLNRMV   74 (271)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            68999999999999999999998754

>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]

Probab=95.73  E-value=0.024  Score=50.02  Aligned_cols=24  Identities=13%  Similarity=0.072  Sum_probs=19.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhC
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      ..+|.|..++||||+-+.++.+..
T Consensus        24 ~~~iEGNIa~GKsTfl~~~~~~t~   47 (244)
T KOG4235|consen   24 LSIIEGNIAVGKSTFLNFFLNKTY   47 (244)
T ss_pred             eEEEecccccchHHHHHHHHhccC
Confidence            334889999999999998877654

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=95.72  E-value=0.0082  Score=53.30  Aligned_cols=25  Identities=40%  Similarity=0.381  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~   54 (237)
T PRK11614         30 QGEIVTLIGANGAGKTTLLGTLCGD   54 (237)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCC
Confidence            6889999999999999999999753

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=95.72  E-value=0.0098  Score=46.65  Aligned_cols=21  Identities=29%  Similarity=0.276  Sum_probs=19.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+-+.|..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999999974

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=95.72  E-value=0.013  Score=47.03  Aligned_cols=31  Identities=26%  Similarity=0.291  Sum_probs=25.6

Q ss_pred             EEEEccCCCcHHHHHHHHHHHh---CCc--eecCch
Q 023749           96 VFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDS  126 (278)
Q Consensus        96 I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~  126 (278)
                      |++.|.+|+||||++..|+..+   |.+  ++|+|.
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~   37 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP   37 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence            8899999999999999998876   544  467764

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=95.71  E-value=0.0097  Score=51.68  Aligned_cols=25  Identities=32%  Similarity=0.364  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (201)
T cd03231          25 AGEALQVTGPNGSGKTTLLRILAGL   49 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999999753

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=95.71  E-value=0.0095  Score=54.08  Aligned_cols=25  Identities=12%  Similarity=0.149  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|.++.|+|++||||||+.+.|+.-
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   59 (264)
T PRK14243         35 KNQITAFIGPSGCGKSTILRCFNRL   59 (264)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999999853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	278
3nwj_A	250	Crystal Structure Of Shikimate Kinase From Arabidop		1e-23
2pt5_A	168	Crystal Structure Of Shikimate Kinase (Aq_2177) Fro		3e-06
1shk_A	173	The Three-dimensional Structure Of Shikimate Kinase		1e-05
1kag_A	173	Crystal Structure Of The Escherichia Coli Shikimate		1e-05
3vaa_A	199	1.7 Angstrom Resolution Crystal Structure Of Shikim		2e-05
3trf_A	185	Structure Of A Shikimate Kinase (Arok) From Coxiell		3e-05
1e6c_A	173	K15m Mutant Of Shikimate Kinase From Erwinia Chrysa		7e-05

>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis Thaliana (Atsk2) Length = 250

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 15/195 (7%)
Query: 80  VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAK 139
           +KKKA ++   L G S++LVGM  + KT +GK +A +L Y +FD D+L+ +A  G S A+
Sbjct: 35  LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAE 94
Query: 140 AFRESDEKGYQQAETEVLKQLSSM-GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGM 198
            F    E  +++ ETE LK+LS M  ++VV  G GAV    N   +  GIS+W+DVP   
Sbjct: 95  IFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEA 154
Query: 199 VARM--------------DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLG 244
           +A                D SG   +  L +L  ++    + Y  A   VSL+ +  +LG
Sbjct: 155 LAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLG 214
Query: 245 YDDLDAVTTEDMTLE 259
           Y  +  +T  ++ +E
Sbjct: 215 YRSVSDLTPAEIAIE 229

>pdb|2PT5|A Chain A, Crystal Structure Of Shikimate Kinase (Aq_2177) From Aquifex Aeolicus Vf5 Length = 168

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 9/149 (6%)
Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
           ++L+G   + K+ +G  L+ +L   ++D D  V +   G S  + F +  E  +++ E E
Sbjct: 3   IYLIGFXCSGKSTVGSLLSRSLNIPFYDVDEEV-QKREGLSIPQIFEKKGEAYFRKLEFE 61
Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVP-PGMVARMDHSGFPESEVL 213
           VLK LS    +V+  G G   +   L   +  G +++ID+P    + R   S   E  +L
Sbjct: 62  VLKDLSEKENVVISTGGGLGANEEALNFXKSRGTTVFIDIPFEVFLERCKDS--KERPLL 119
Query: 214 P----QLFALYKEMRDGYATADVTVSLQK 238
                ++  L++E R  Y+ AD+ V  +K
Sbjct: 120 KRPLDEIKNLFEERRKIYSKADIKVKGEK 148

>pdb|1SHK|A Chain A, The Three-dimensional Structure Of Shikimate Kinase From Erwinia Chrysanthemi Length = 173

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
           +F+VG     KT +G+ LA AL Y + D+D +  +   G + A         G+++ E+E
Sbjct: 5   IFMVGARGCGKTTVGRELARALGYEFVDTD-IFMQHTSGMTVADVVAAEGWPGFRRRESE 63
Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVP 195
            L+ +++  R VV  G G V    N   +R HG  +++  P
Sbjct: 64  ALQAVATPNR-VVATGGGMVLLEQNRQFMRAHGTVVYLFAP 103

>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase I (Arok) Length = 173

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 26/168 (15%)
Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
           ++FLVG   A K+ +G+ LA  L   ++DSD  + E   G      F    E+G++  E 
Sbjct: 6   NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEI-EKRTGADVGWVFDLEGEEGFRDREE 64
Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVP-PGMVARMD--------H 204
           +V+ +L+    +V+  G G+V+S      L   G+ ++++      +AR          H
Sbjct: 65  KVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLH 124
Query: 205 SGFPESEVLPQLFA----LYKEMRDGYATADVTV-----SLQKVASQL 243
              P  EVL  L      LY+E+      ADVT+     S + VA+Q+
Sbjct: 125 VETPPREVLEALANERNPLYEEI------ADVTIRTDDQSAKVVANQI 166

>pdb|3VAA|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Shikimate Kinase From Bacteroides Thetaiotaomicron Length = 199

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
           +FL G   A KT LGK  A  L   + D D  + E    ++  + F E  E G+++ E  
Sbjct: 28  IFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYI-EERFHKTVGELFTERGEAGFRELERN 86
Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALL-RHGISLWIDVPPGMVAR 201
           +L +++    +V+  G GA     N+  + R G +++++V P ++ R
Sbjct: 87  MLHEVAEFENVVISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFR 133

>pdb|3TRF|A Chain A, Structure Of A Shikimate Kinase (Arok) From Coxiella Burnetii Length = 185

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 94  TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAE 153
           T+++L+G+  A KT +G  LA   +   +DSD  + E   G   A  F    E G+++ E
Sbjct: 6   TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEI-EKRTGADIAWIFEMEGEAGFRRRE 64
Query: 154 TEVLKQLSSMGRLVVCAGNGAVQSSAN 180
            E+++ L  +  +++  G G V    N
Sbjct: 65  REMIEALCKLDNIILATGGGVVLDEKN 91

>pdb|1E6C|A Chain A, K15m Mutant Of Shikimate Kinase From Erwinia Chrysanthemi Length = 173

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
           +F+VG      T +G+ LA AL Y + D+D +  +   G + A         G+++ E+E
Sbjct: 5   IFMVGARGCGMTTVGRELARALGYEFVDTD-IFMQHTSGMTVADVVAAEGWPGFRRRESE 63
Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVP 195
            L+ +++  R VV  G G V    N   +R HG  +++  P
Sbjct: 64  ALQAVATPNR-VVATGGGMVLLEQNRQFMRAHGTVVYLFAP 103

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	278
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	7e-50
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	1e-16
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	1e-16
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	2e-16
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	7e-16
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	2e-15
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	1e-14
1via_A	175	Shikimate kinase; structural genomics, transferase	5e-12
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	4e-05
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	6e-05

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} Length = 250

 Score =  164 bits (416), Expect = 7e-50
 Identities = 67/226 (29%), Positives = 114/226 (50%), Gaps = 15/226 (6%)

Query: 50  RKPRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHL 109
           R   ++ ++ +    + ++     ++    +KKKA ++   L G S++LVGM  + KT +
Sbjct: 5   RLRSVSDKNSSALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTV 64

Query: 110 GKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSM-GRLVV 168
           GK +A +L Y +FD D+L+ +A  G S A+ F    E  +++ ETE LK+LS M  ++VV
Sbjct: 65  GKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVV 124

Query: 169 CAGNGAVQSSANLALLRHGISLWIDVPPGMVAR--------------MDHSGFPESEVLP 214
             G GAV    N   +  GIS+W+DVP   +A                D SG   +  L 
Sbjct: 125 STGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALN 184

Query: 215 QLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEV 260
           +L  ++    + Y  A   VSL+ +  +LGY  +  +T  ++ +E 
Sbjct: 185 RLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEA 230

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Length = 199

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 11/150 (7%)

Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
           +FL G   A KT LGK  A  L   + D D  + E    ++  + F E  E G+++ E  
Sbjct: 28  IFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYI-EERFHKTVGELFTERGEAGFRELERN 86

Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPG-MVARMDHS-------- 205
           +L +++    +V+  G GA     N+  +   G +++++V P  +  R+  +        
Sbjct: 87  MLHEVAEFENVVISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAKQQRPILQ 146

Query: 206 GFPESEVLPQLFALYKEMRDGYATADVTVS 235
           G  + E++  +    ++    Y  A    +
Sbjct: 147 GKEDDELMDFIIQALEKRAPFYTQAQYIFN 176

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Length = 184

 Score = 74.9 bits (185), Expect = 1e-16
 Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 24/166 (14%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
              LVG+  + K+ +G+ LA AL     D+D  + E   G S A  F    E+ +++ E 
Sbjct: 4   KAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAI-EQRTGRSIADIFATDGEQEFRRIEE 62

Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPG-MVARMDHS-------G 206
           +V++   +    V+  G GAV S    A L     +++++     V R   +       G
Sbjct: 63  DVVRAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAG 122

Query: 207 FPESEVLPQLFA----LYKEMRDGYATADVTV-----SLQKVASQL 243
              +E    L A    LY+        A + V     +   V   +
Sbjct: 123 PDRAEKYRALMAKRAPLYRR------VATMRVDTNRRNPGAVVRHI 162

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Length = 173

 Score = 74.5 bits (184), Expect = 2e-16
 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 14/162 (8%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
           ++FLVG   A K+ +G+ LA  L   ++DSD  + E   G      F    E+G++  E 
Sbjct: 6   NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEI-EKRTGADVGWVFDLEGEEGFRDREE 64

Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPG-MVARMDHSG-----F 207
           +V+ +L+    +V+  G G+V+S      L   G+ ++++      +AR           
Sbjct: 65  KVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLH 124

Query: 208 PESEVLPQLFALYKEMRDGYA-TADVTV-----SLQKVASQL 243
            E+     L AL  E    Y   ADVT+     S + VA+Q+
Sbjct: 125 VETPPREVLEALANERNPLYEEIADVTIRTDDQSAKVVANQI 166

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Length = 185

 Score = 73.0 bits (180), Expect = 7e-16
 Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 2/103 (1%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
           +++L+G+  A KT +G  LA   +   +DSD  + E   G   A  F    E G+++ E 
Sbjct: 7   NIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEI-EKRTGADIAWIFEMEGEAGFRRRER 65

Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPP 196
           E+++ L  +  +++  G G V    N   +   G+ +++    
Sbjct: 66  EMIEALCKLDNIILATGGGVVLDEKNRQQISETGVVIYLTASI 108

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} Length = 168

 Score = 71.4 bits (176), Expect = 2e-15
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 13/148 (8%)

Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
           ++L+G   + K+ +G  L+ +L   ++D D  V +   G S  + F +  E  +++ E E
Sbjct: 3   IYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEV-QKREGLSIPQIFEKKGEAYFRKLEFE 61

Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPG-MVARMDHSG------F 207
           VLK LS    +V+  G G   +   L  ++  G +++ID+P    + R   S        
Sbjct: 62  VLKDLSEKENVVISTGGGLGANEEALNFMKSRGTTVFIDIPFEVFLERCKDSKERPLLKR 121

Query: 208 PESEVLPQLFALYKEMRDGYATADVTVS 235
           P  E    +  L++E R  Y+ AD+ V 
Sbjct: 122 PLDE----IKNLFEERRKIYSKADIKVK 145

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Length = 173

 Score = 69.1 bits (170), Expect = 1e-14
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 3/103 (2%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
            +F+VG      T +G+ LA AL Y + D+D  + +   G + A         G+++ E+
Sbjct: 4   PIFMVGARGCGMTTVGRELARALGYEFVDTDIFM-QHTSGMTVADVVAAEGWPGFRRRES 62

Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPP 196
           E L+ +++    VV  G G V    N   +R HG  +++  P 
Sbjct: 63  EALQAVAT-PNRVVATGGGMVLLEQNRQFMRAHGTVVYLFAPA 104

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Length = 175

 Score = 62.2 bits (152), Expect = 5e-12
 Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
           ++  +G   + K+ L + LA  L   + DSD L+ E    +  ++ F +  E  +++ E 
Sbjct: 6   NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLI-EQKFNQKVSEIFEQKRENFFREQEQ 64

Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPP 196
           ++    SS  +  +  G G V    N++ L   G  +++    
Sbjct: 65  KMADFFSSCEKACIATGGGFV----NVSNLEKAGFCIYLKADF 103

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Length = 168

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
            + L+G   + K+ L + L  AL+    D+D ++     G S  + F E  E  ++  E 
Sbjct: 9   HLVLIGFMGSGKSSLAQELGLALKLEVLDTDMII-SERVGLSVREIFEELGEDNFRMFEK 67

Query: 155 EVLKQLSSMGRLVVCA-GNGAVQSSANLALLRHGISLWIDVPP 196
            ++ +L ++    V + G G V    +  L   G + ++ +  
Sbjct: 68  NLIDELKTLKTPHVISTGGGIV---MHENLKGLGTTFYLKMDF 107

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 3e-06
 Identities = 47/361 (13%), Positives = 88/361 (24%), Gaps = 141/361 (39%)

Query: 22  LKFDPPFSLLHSQSYAP------IRTSLQYSIISRK-PR--------------------- 53
            + DP ++     S         I+  L+  + S+                         
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 54  ---ITTR--SIADDTTSNTVTKVAAEDPS-----------FA--VKKKAADISTELKGTS 95
              +TTR   + D  ++ T T ++ +  S               +  +  D+  E+  T+
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 96  VFLVGM-----------------------NNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132
              + +                          I++ L        R  +     L     
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR---LSV--- 380

Query: 133 GGESAAKAFRES------------DEKGYQQAETEVLKQL--SSMGRLVVCAGNGAVQSS 178
                   F  S             +         V+ +L   S+            +  
Sbjct: 381 --------FPPSAHIPTILLSLIWFDVIKSDVM-VVVNKLHKYSL----------VEKQP 421

Query: 179 ANLALLRHGISLWIDVPPGMVARMDHSGFPESEVLPQLF---ALYKEMRDGYATADVTVS 235
               +    I L + V       + H    +   +P+ F    L     D Y        
Sbjct: 422 KESTISIPSIYLELKVKLENEYAL-HRSIVDHYNIPKTFDSDDLIPPYLDQY-------- 472

Query: 236 LQKVASQLGYDDLDAVTTEDMT-----------LEVK-------WLYNASISDPTSRLLG 277
                S +G+   +    E MT           LE K       W  + SI +   +L  
Sbjct: 473 ---FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529

Query: 278 Y 278
           Y
Sbjct: 530 Y 530

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 4e-06
 Identities = 40/276 (14%), Positives = 80/276 (28%), Gaps = 77/276 (27%)

Query: 31  LHSQSYAPIRTSLQYSIISRKPRITTRSIAD--DTTSNTV---TK--VAAEDPSFAVKKK 83
           +   +Y  + + ++     R+P + TR   +  D   N      K  V+   P   +++ 
Sbjct: 86  VLRINYKFLMSPIKTE--QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 84  AADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE----SAA 138
                 EL+   +V + G+  + KT +     D            V      +    +  
Sbjct: 144 L----LELRPAKNVLIDGVLGSGKTWV---ALDVCL------SYKVQCKMDFKIFWLNL- 189

Query: 139 KAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLAL--------LR----- 185
                        +   VL+ L  +   +          S+N+ L        LR     
Sbjct: 190 ---------KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 186 --HGISLWI--DV-PPGMVARMDHSGFPESEVLPQLFALYKEM--RDGYATADVTVSLQK 238
             +   L +  +V         + S     ++L         +  R    T  ++ +   
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLS----CKIL---------LTTRFKQVTDFLSAATTT 287

Query: 239 VASQLGYDDLDAVTTEDMTLEV--KWLYNASISD-P 271
             S    D      T D    +  K+L +    D P
Sbjct: 288 HISL---DHHSMTLTPDEVKSLLLKYL-DCRPQDLP 319

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Length = 200

 Score = 42.4 bits (99), Expect = 4e-05
 Identities = 22/165 (13%), Positives = 52/165 (31%), Gaps = 12/165 (7%)

Query: 88  STELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-SAAKAFRESDE 146
            T      V ++G++ + KT +   +AD     + ++D+                 + D 
Sbjct: 24  MTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDR 83

Query: 147 KGYQQAETEVLKQLSSMGRLVV--CAGNGAVQSSANLALLRHGISLWIDVPPG-----MV 199
             + ++  E +   +  G   +  C+                   L +D P       M 
Sbjct: 84  WPWLRSLAEWMDARADAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMS 143

Query: 200 ARMDHSGFPESEVLPQLFALYKEMRDGYA--TADVTVSLQKVASQ 242
            R  H  F  + +L    A  + +    +    D+    +++  +
Sbjct: 144 KREGH--FMPASLLQSQLATLEALEPDESGIVLDLRQPPEQLIER 186

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Length = 175

 Score = 41.6 bits (97), Expect = 6e-05
 Identities = 27/168 (16%), Positives = 61/168 (36%), Gaps = 17/168 (10%)

Query: 88  STELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-SAAKAFRESDE 146
           +T        L+G++ + K+ +   +A  L   + D D L       + ++ +   + D 
Sbjct: 3   TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDR 62

Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHG----ISLWIDVPPG----- 197
           K + QA  +    +    ++ +   +   +      LLR G      +++          
Sbjct: 63  KPWLQALNDAAFAMQRTNKVSLIVCSALKK--HYRDLLREGNPNLSFIYLKGDFDVIESR 120

Query: 198 MVARMDHSGFPESEVLPQLFALYKEMRDGYA---TADVTVSLQKVASQ 242
           + AR  H  F ++++L   F   +E           D+   L+ V + 
Sbjct: 121 LKARKGH--FFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVAS 166

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	278
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.97
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.95
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.95
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.93
1via_A	175	Shikimate kinase; structural genomics, transferase	99.92
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.91
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.91
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.91
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.9
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.83
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	99.81
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.77
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.76
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.74
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.73
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.72
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.72
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.71
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.71
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.7
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.7
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.7
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.69
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.68
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.68
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.67
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.67
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.67
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.67
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.66
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.66
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.64
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.64
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.64
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.63
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.63
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.62
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.61
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.6
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.6
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.59
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.59
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.59
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.59
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.57
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.57
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	99.57
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.56
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.55
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.53
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.53
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.52
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.52
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.52
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.51
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	99.51
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.51
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	99.51
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	99.5
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.5
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.5
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.5
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.49
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.48
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.48
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.47
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.47
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.47
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.44
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.43
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	99.43
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.43
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	99.4
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.37
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.36
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.32
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.32
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.32
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	99.26
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.25
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.22
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.21
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	99.19
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	99.19
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	99.18
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.18
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.17
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.16
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.12
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.11
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	99.09
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	99.05
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.04
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.02
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	99.01
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.99
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	98.99
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.98
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	98.92
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.91
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.91
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	98.89
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.85
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.82
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.78
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	98.77
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.75
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.74
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.68
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.63
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.61
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	98.58
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.58
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	98.54
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	98.53
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	98.42
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.42
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.41
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.32
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.27
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.13
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	98.1
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.1
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.0
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	97.94
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.92
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.86
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.83
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.83
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.78
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.66
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	97.63
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.59
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.59
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.59
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.59
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.55
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.55
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.54
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.54
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.52
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	97.51
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.5
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	97.5
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.46
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.46
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.46
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.45
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.44
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	97.39
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.38
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.33
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.3
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.28
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.27
3bos_A	242	Putative DNA replication factor; P-loop containing	97.25
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.25
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.24
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.22
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.21
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.2
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.19
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.18
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.17
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.16
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.16
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.13
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.12
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.1
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.08
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.08
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.08
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.08
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.04
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.02
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.01
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.01
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.0
3co5_A	143	Putative two-component system transcriptional RES	96.98
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.97
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.97
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.91
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.88
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.86
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.81
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.8
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.79
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.78
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.77
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.73
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.73
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.73
2chq_A	319	Replication factor C small subunit; DNA-binding pr	96.69
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.69
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.67
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.67
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.64
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.63
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.62
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.62
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.61
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.6
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.59
3pvs_A	447	Replication-associated recombination protein A; ma	96.57
2qgz_A	308	Helicase loader, putative primosome component; str	96.56
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.56
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.53
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.53
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.52
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.52
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.51
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.51
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.46
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.44
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.43
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	96.43
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.42
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.39
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.37
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.34
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.32
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.32
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.32
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.31
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.29
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.29
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.28
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.28
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.28
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.28
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.28
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.27
1g6h_A	257	High-affinity branched-chain amino acid transport	96.27
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.25
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.25
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.22
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.22
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.22
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.21
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.21
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.21
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	96.19
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.19
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.17
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	96.15
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.15
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.14
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.14
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.14
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.13
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.13
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.12
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.12
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.11
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.08
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.07
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.06
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.05
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.05
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.02
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.98
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	95.98
2og2_A	359	Putative signal recognition particle receptor; nuc	95.95
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.95
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.91
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.91
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	95.87
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.87
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	95.85
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.84
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	95.84
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.83
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	95.79
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	95.78
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.77
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.76
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.75
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.75
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.74
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	95.73
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.73
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.72
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	95.72
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.7
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.67
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.67
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	95.65
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.63
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.62
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.61
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	95.59
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	95.58
2fna_A	357	Conserved hypothetical protein; structural genomic	95.53
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.52
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	95.51
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.5
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.47
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	95.46
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	95.45
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.43
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	95.43
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.38
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.38
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.3
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.29
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.27
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.26
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.26
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.25
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	95.25
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	95.25
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	95.24
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.24
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	95.24
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.23
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.16
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	95.16
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.15
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.15
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.15
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.13
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	95.11
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	95.09
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.07
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.03
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.02
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.02
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	94.96
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	94.96
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	94.93
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.93
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	94.92
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.9
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	94.85
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	94.84
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	94.83
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	94.82
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	94.77
2ged_A	193	SR-beta, signal recognition particle receptor beta	94.76
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	94.71
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	94.7
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	94.67
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.65
1nrj_B	218	SR-beta, signal recognition particle receptor beta	94.65
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	94.61
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	94.61
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	94.58
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.58
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	94.56
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	94.55
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	94.55
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	94.54
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	94.53
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	94.52
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	94.52
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	94.52
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	94.5
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	94.5
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	94.48
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	94.46
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	94.44
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	94.44
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	94.42
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	94.42
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	94.42
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.4
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	94.39
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	94.38
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	94.38
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.38
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	94.37
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	94.35
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	94.34
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	94.34
2z43_A	324	DNA repair and recombination protein RADA; archaea	94.34
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.34
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	94.33
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	94.32
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	94.29
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	94.29
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	94.28
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	94.25
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	94.24
1u94_A	356	RECA protein, recombinase A; homologous recombinat	94.23
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	94.21
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	94.2
3ice_A	422	Transcription termination factor RHO; transcriptio	94.18
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	94.18
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	94.18
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.18
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	94.17
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	94.16
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	94.16
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	94.15
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	94.13
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	94.12
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	94.11
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.1
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	94.1
2r6a_A	454	DNAB helicase, replicative helicase; replication,	94.1
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	94.09
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	94.07
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	94.06
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	94.05
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	94.04
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	94.03
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	94.01
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	94.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	93.99
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	93.99
1xp8_A	366	RECA protein, recombinase A; recombination, radior	93.98
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	93.98
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	93.98
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	93.98
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	93.96
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	93.9
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	93.9
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	93.86
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	93.85
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	93.84
2xxa_A	433	Signal recognition particle protein; protein trans	93.83
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	93.79
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	93.79
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	93.77
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	93.75
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	93.75
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	93.74
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	93.73
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	93.68
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	93.67
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	93.66
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	93.66
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	93.65
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	93.65
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	93.64
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	93.64
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	93.61
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	93.61
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	93.58
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	93.57
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	93.53
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	93.5
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	93.49
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	93.47
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	93.47
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	93.45
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	93.45
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	93.42
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	93.42
2fh5_B	214	SR-beta, signal recognition particle receptor beta	93.41
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	93.41
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	93.4
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	93.4
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	93.4
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	93.37
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	93.34
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	93.33
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	93.31
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	93.24
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	93.2
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	93.2
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	93.19
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	93.19
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	93.17
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	93.16
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	93.16
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	93.14
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	93.14
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	93.11
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	93.11
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	93.07
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	93.07
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	93.04
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	93.02
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	93.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	92.97
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	92.95
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	92.91
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	92.9
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	92.88
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	92.86
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	92.84
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	92.82
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	92.78
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	92.76
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	92.71
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	92.7
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	92.67
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	92.62
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	92.61
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	92.52
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	92.51
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	92.48
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	92.47
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	92.47
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	92.4
3llu_A	196	RAS-related GTP-binding protein C; structural geno	92.39
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	92.25
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	92.16
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	92.11

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.97  E-value=3.9e-30  Score=231.48  Aligned_cols=192  Identities=33%  Similarity=0.542  Sum_probs=168.7

Q ss_pred             ccHHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh-CCCChHHHHHhhchhHhHHHHH
Q 023749           76 PSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGESAAKAFRESDEKGYQQAET  154 (278)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~-g~~~i~ei~~~~ge~~fr~~e~  154 (278)
                      ....+++...+|.+.++|..|+|+|++||||||+++.||+.+|++++|+|.+++... | +++.++|...|+..|++.|.
T Consensus        31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g-~~i~~i~~~~ge~~fr~~e~  109 (250)
T 3nwj_A           31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKG-TSVAEIFEHFGESVFREKET  109 (250)
T ss_dssp             -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTT-SCHHHHHHHHCHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcC-ccHHHHHHHhCcHHHHHHHH
Confidence            346788888888898999999999999999999999999999999999999999988 6 89999999999999999999


Q ss_pred             HHHHHHHcC-CCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hc---CCCCCCC----------hHHHHHHH
Q 023749          155 EVLKQLSSM-GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DH---SGFPESE----------VLPQLFAL  219 (278)
Q Consensus       155 ~vl~~l~~~-~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~---r~rp~~~----------~~~~l~~~  219 (278)
                      .++.++... .+.||++|+|++.++.++..++.+++|||++|++++.+| .+   +.||...          ..+.+..+
T Consensus       110 ~~l~~l~~~~~~~Via~GgG~v~~~~~~~~l~~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l  189 (250)
T 3nwj_A          110 EALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTI  189 (250)
T ss_dssp             HHHHHHHHHCSSEEEECCGGGGGSHHHHHHHTTSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCcEEecCCCeecCHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHH
Confidence            999888765 689999999999999999888888999999999999999 43   3455211          24678899


Q ss_pred             HHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          220 YKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       220 ~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                      +++|.+.|..||++|++++++.+.+++||+++++++++++|++++...+
T Consensus       190 ~~eR~~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~  238 (250)
T 3nwj_A          190 WDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYL  238 (250)
T ss_dssp             HHHHHHHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999989999999999999999999999999998765

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=1.3e-26  Score=199.25  Aligned_cols=164  Identities=21%  Similarity=0.294  Sum_probs=144.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG  171 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g  171 (278)
                      +++.|+|+|++||||||+|+.|++.+|++++|.|+++++..| .++.++|...|+..|+..+..++..+....++||++|
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g-~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~g  102 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH-KTVGELFTERGEAGFRELERNMLHEVAEFENVVISTG  102 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEECC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC-CcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcEEECC
Confidence            578999999999999999999999999999999999999888 8889999999999999999999999887788999999


Q ss_pred             CceeechhHHHhhh-CCcEEEEEcCHHHHHhh-h-c-CCCCC---CCh---HHHHHHHHHHhhhccccCcEEEecCcccc
Q 023749          172 NGAVQSSANLALLR-HGISLWIDVPPGMVARM-D-H-SGFPE---SEV---LPQLFALYKEMRDGYATADVTVSLQKVAS  241 (278)
Q Consensus       172 ~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~-~-r~rp~---~~~---~~~l~~~~~er~~~Y~~AD~vId~~~va~  241 (278)
                      +|.+....+++.++ .+.+|||++|++++.+| . . +.||.   .+.   .+.+..+|++|.+.|..||++||      
T Consensus       103 gg~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~y~~ad~~Id------  176 (199)
T 3vaa_A          103 GGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAPFYTQAQYIFN------  176 (199)
T ss_dssp             TTGGGSTTHHHHHHHHSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHHHHTTSSEEEE------
T ss_pred             CcEEccHHHHHHHHcCCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHhhCCEEEE------
Confidence            99988888887776 78999999999999999 4 3 34552   222   46688899999999988999998      


Q ss_pred             cccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          242 QLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       242 ~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                            |+++++++++++|.+.+.+.+
T Consensus       177 ------t~~~s~ee~~~~I~~~l~~~l  197 (199)
T 3vaa_A          177 ------ADELEDRWQIESSVQRLQELL  197 (199)
T ss_dssp             ------CCCCSSHHHHHHHHHHHHHHT
T ss_pred             ------CCCCCHHHHHHHHHHHHHHHh
Confidence                  578899999999999998765

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.95  E-value=1.6e-26  Score=195.13  Aligned_cols=166  Identities=20%  Similarity=0.314  Sum_probs=141.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN  172 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~  172 (278)
                      ++.|+|+|++||||||+|+.||+++|++++|+|.++++..| .++.+++...|+..|+..+..++..+....++|+++|+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~gg   83 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG-ADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGG   83 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEECCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC-CChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcEEecCC
Confidence            67899999999999999999999999999999999999888 78889999999999999999999998877788999999


Q ss_pred             ceeechhHHHhhh-CCcEEEEEcCHHHHHhhh--c--CCCCCC-C--hHHHHHHHHHHhhhcccc-CcEEEecCcccccc
Q 023749          173 GAVQSSANLALLR-HGISLWIDVPPGMVARMD--H--SGFPES-E--VLPQLFALYKEMRDGYAT-ADVTVSLQKVASQL  243 (278)
Q Consensus       173 g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R~--~--r~rp~~-~--~~~~l~~~~~er~~~Y~~-AD~vId~~~va~~~  243 (278)
                      +++.++.+++.++ .+++|||++|++++.+|-  .  +.||.. +  ..+.+..++.+|.+.|+. +|++||        
T Consensus        84 ~~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~y~~~ad~~Id--------  155 (185)
T 3trf_A           84 GVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQAMADLVYP--------  155 (185)
T ss_dssp             TGGGSHHHHHHHHHHEEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEE--------
T ss_pred             ceecCHHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCEEEE--------
Confidence            9999888888776 679999999999999992  2  235532 2  346788899999999984 999998        


Q ss_pred             cccCCCCCCHHHHHHHHHHHhhhcCCCC
Q 023749          244 GYDDLDAVTTEDMTLEVKWLYNASISDP  271 (278)
Q Consensus       244 ~~~Dts~~tpeeva~~I~~~i~~~~~~~  271 (278)
                          |++.++++++++|.+++.+.+++.
T Consensus       156 ----t~~~~~~e~~~~I~~~l~~~~~~~  179 (185)
T 3trf_A          156 ----TDDLNPRQLATQILVDIKQTYSDL  179 (185)
T ss_dssp             ----CTTCCHHHHHHHHHHHSCC-----
T ss_pred             ----CCCCCHHHHHHHHHHHHHHHhhhh
Confidence                577899999999999999887653

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.93  E-value=8.4e-25  Score=184.67  Aligned_cols=164  Identities=20%  Similarity=0.238  Sum_probs=136.0

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN  172 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~  172 (278)
                      +++|+|+|+|||||||+|+.|++++|++++|+|.++++..| ..+.++|...|+..|+..+..++..+....++|+.+|+
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g~   80 (184)
T 2iyv_A            2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG-RSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGG   80 (184)
T ss_dssp             CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS-SCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC-CCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecCC
Confidence            56799999999999999999999999999999999998888 77778888788889998888888877766678888888


Q ss_pred             ceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcC-CCCC---CChHHHHHHHHHHhhhccc-cCcEEEecCccccccccc
Q 023749          173 GAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPE---SEVLPQLFALYKEMRDGYA-TADVTVSLQKVASQLGYD  246 (278)
Q Consensus       173 g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r-~rp~---~~~~~~l~~~~~er~~~Y~-~AD~vId~~~va~~~~~~  246 (278)
                      ++++++.+++.++.+.+|||++|++++.+| ..| +++.   .+..+.+..++.+|.+.|. .+|++||           
T Consensus        81 ~~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~Id-----------  149 (184)
T 2iyv_A           81 GAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVD-----------  149 (184)
T ss_dssp             TGGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHHHCSEEEE-----------
T ss_pred             cEEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHHhccCCEEEE-----------
Confidence            888887777766667999999999999999 444 3442   2345678888888888886 5899998           


Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCC
Q 023749          247 DLDAVTTEDMTLEVKWLYNASIS  269 (278)
Q Consensus       247 Dts~~tpeeva~~I~~~i~~~~~  269 (278)
                       |++.++++++++|.+++....+
T Consensus       150 -t~~~s~ee~~~~I~~~l~~~~~  171 (184)
T 2iyv_A          150 -TNRRNPGAVVRHILSRLQVPSP  171 (184)
T ss_dssp             -CSSSCHHHHHHHHHTTSCCCCT
T ss_pred             -CCCCCHHHHHHHHHHHHhhcCc
Confidence             5668999999999998865443

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.92  E-value=2.2e-24  Score=181.12  Aligned_cols=157  Identities=19%  Similarity=0.325  Sum_probs=131.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g  173 (278)
                      ++|+|+|+|||||||+|+.||+++|++++|+|.++++..| .++.+++...|+..|++.+..++..+....++||++|++
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~   83 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN-QKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG   83 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT-SCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC-CCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCC
Confidence            4799999999999999999999999999999999988888 788888888888899988888888887667789988888


Q ss_pred             eeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcC---CCCCCChHHHHHHHHHHhhhccc-cCcEEEecCcccccccccC
Q 023749          174 AVQSSANLALLR-HGISLWIDVPPGMVARM-DHS---GFPESEVLPQLFALYKEMRDGYA-TADVTVSLQKVASQLGYDD  247 (278)
Q Consensus       174 ~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r---~rp~~~~~~~l~~~~~er~~~Y~-~AD~vId~~~va~~~~~~D  247 (278)
                      ++.+ .+   ++ .+++|||++|++++.+| ..|   .||.....+.+..+|.+|.+.|. .++++||            
T Consensus        84 ~~~~-~~---l~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r~~~y~~~~~~~Id------------  147 (175)
T 1via_A           84 FVNV-SN---LEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKANFILN------------  147 (175)
T ss_dssp             GGGS-TT---GGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHHHHHCSEEEE------------
T ss_pred             Eehh-hH---HhcCCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHhcCCEEEE------------
Confidence            7776 44   54 67999999999999999 333   56643326778889999999887 4899998            


Q ss_pred             CCCCCHHHHHHHHHHHhhhc
Q 023749          248 LDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       248 ts~~tpeeva~~I~~~i~~~  267 (278)
                      |++.++++++++|.+.+..-
T Consensus       148 t~~~~~eev~~~I~~~l~~~  167 (175)
T 1via_A          148 IENKNIDELLSEIKKVIKEG  167 (175)
T ss_dssp             CTTCCHHHHHHHHHHHHC--
T ss_pred             CCCCCHHHHHHHHHHHHHhc
Confidence            67789999999999998643

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.91  E-value=5.1e-24  Score=177.57  Aligned_cols=152  Identities=20%  Similarity=0.327  Sum_probs=124.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCE-EEEeCC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL-VVCAGN  172 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~-VI~~g~  172 (278)
                      .+|+|+|++||||||+|+.||++||++++|+|.++++..| ..+.+++..+|+..|++.+.+++..+...+++ |+++|+
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~g~   86 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG-LSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTGG   86 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEECCG
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC-CCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEECCC
Confidence            5899999999999999999999999999999999998888 78888998889999998888888888766777 888877


Q ss_pred             ceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcC---CCCCC-ChHHHHHHHHHHhhhcccc-CcEEEecCcccccccc
Q 023749          173 GAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS---GFPES-EVLPQLFALYKEMRDGYAT-ADVTVSLQKVASQLGY  245 (278)
Q Consensus       173 g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r---~rp~~-~~~~~l~~~~~er~~~Y~~-AD~vId~~~va~~~~~  245 (278)
                      +++.. .+   |+ .+.+|||++|++++.+| ..|   +|+.. + .+.+...+.+|.+.|.. +|++||+         
T Consensus        87 g~~~~-~~---l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~-~~~~~~~~~~r~~~~~~~a~~~Id~---------  152 (168)
T 1zuh_A           87 GIVMH-EN---LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNN-LTQAKELFEKRQALYEKNASFIIDA---------  152 (168)
T ss_dssp             GGGGC-GG---GTTSEEEEEEECCHHHHHHHHCC--------CCT-THHHHHHHHHHHHHHHHTCSEEEEG---------
T ss_pred             CEech-hH---HhcCCEEEEEECCHHHHHHHHhccCCCCCCCccC-HHHHHHHHHHHHHHHHHHCCEEEEC---------
Confidence            77665 33   55 67999999999999999 443   34421 2 46788888888888874 9999984         


Q ss_pred             cCCCCCCHHHHHHHHHHHh
Q 023749          246 DDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       246 ~Dts~~tpeeva~~I~~~i  264 (278)
                         ++ ++++++++|.+++
T Consensus       153 ---~~-~~e~~~~~I~~~l  167 (168)
T 1zuh_A          153 ---RG-GLNNSLKQVLQFI  167 (168)
T ss_dssp             ---GG-CHHHHHHHHHHC-
T ss_pred             ---CC-CHHHHHHHHHHHh
Confidence               56 9999999998765

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.91  E-value=1.3e-23  Score=175.22  Aligned_cols=162  Identities=23%  Similarity=0.360  Sum_probs=128.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG  171 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g  171 (278)
                      +++.|+|+|++||||||+++.|++.+|++++|.|.++++..+ ..+..+|...|+..|+..+..++..+....+.++.+|
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~-~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~~~~   81 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG-ADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATG   81 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC-cCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEEECC
Confidence            467899999999999999999999999999999999888777 7778888878888898887778888776677888887


Q ss_pred             CceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcC-CCCC---CCh-HHHHHHHHHHhhhccc-cCcEEEecCcccccc
Q 023749          172 NGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPE---SEV-LPQLFALYKEMRDGYA-TADVTVSLQKVASQL  243 (278)
Q Consensus       172 ~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r-~rp~---~~~-~~~l~~~~~er~~~Y~-~AD~vId~~~va~~~  243 (278)
                      ++.+..+.+++.++ .+++|||++|++++.+| ..| .+|.   .+. .+.+..++.+|.+.|. .+|++||        
T Consensus        82 ~~~~~~~~~~~~l~~~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~id--------  153 (173)
T 1kag_A           82 GGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIR--------  153 (173)
T ss_dssp             TTGGGSHHHHHHHHHHSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHHCSEEC---------
T ss_pred             CeEEecHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhCCEEEE--------
Confidence            66666666776666 68999999999999999 433 3442   233 6788889999999887 5899988        


Q ss_pred             cccCCCCCCHHHHHHHHHHHhhh
Q 023749          244 GYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       244 ~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                          |++.++++++++|.+++..
T Consensus       154 ----~~~~~~~~~~~~i~~~l~~  172 (173)
T 1kag_A          154 ----TDDQSAKVVANQIIHMLES  172 (173)
T ss_dssp             --------CHHHHHHHHHHHHC-
T ss_pred             ----CCCCCHHHHHHHHHHHHHh
Confidence                5678999999999998864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.91  E-value=2.4e-23  Score=173.27  Aligned_cols=160  Identities=22%  Similarity=0.315  Sum_probs=131.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN  172 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~  172 (278)
                      .+.|+|+|++||||||+|+.|++.+|++++|+|.++++..| ..+.+++...|+..|+..+..++..+. ..++||++|+
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi~~g~   79 (173)
T 1e6c_A            2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSG-MTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATGG   79 (173)
T ss_dssp             CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECCT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhC-CCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEEECCC
Confidence            36799999999999999999999999999999999988877 777788877788888888888887776 5678888887


Q ss_pred             ceeechhHHHhhh-CCcEEEEEcCHHHHHhh-h--cC--CCCCCC---hHHHHHHHHHHhhhccccCcEEEecCcccccc
Q 023749          173 GAVQSSANLALLR-HGISLWIDVPPGMVARM-D--HS--GFPESE---VLPQLFALYKEMRDGYATADVTVSLQKVASQL  243 (278)
Q Consensus       173 g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~--~r--~rp~~~---~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~  243 (278)
                      +.+..+.+++.++ .+++|||++|++++.+| .  .|  .++...   ..+.+..+|.++.+.|..+|++||        
T Consensus        80 ~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id--------  151 (173)
T 1e6c_A           80 GMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVV--------  151 (173)
T ss_dssp             TGGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCSEEE--------
T ss_pred             cEEeCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHhCcEEEE--------
Confidence            7777777777665 68999999999999999 6  66  344322   234577788888777766899998        


Q ss_pred             cccCCCCCCHHHHHHHHHHHhhh
Q 023749          244 GYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       244 ~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                          +++.++++++++|.+++..
T Consensus       152 ----~~~~~~~~~~~~i~~~l~~  170 (173)
T 1e6c_A          152 ----DATQPPAAIVCELMQTMRL  170 (173)
T ss_dssp             ----ETTSCHHHHHHHHHHHTTC
T ss_pred             ----CCCCCHHHHHHHHHHHhcc
Confidence                4668999999999988753

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.90  E-value=4.9e-23  Score=170.86  Aligned_cols=159  Identities=25%  Similarity=0.419  Sum_probs=129.3

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g  173 (278)
                      |.|+|+|++||||||+|+.|++.+|++++|+|.+.++..| ..+.+++...|+..|+..+..++..+...+.+||++|++
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~   79 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREG-LSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGG   79 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcC-CCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCC
Confidence            5799999999999999999999999999999999988888 778888888888888888888888877567788887766


Q ss_pred             eeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcC-CCCCC-ChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCC
Q 023749          174 AVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPES-EVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLD  249 (278)
Q Consensus       174 ~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r-~rp~~-~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts  249 (278)
                      ....+.+++.++ .+++|||++|++++.+| ..| .|+.. +..+.+...|.++.+.|..+|++| +            +
T Consensus        80 ~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i-~------------~  146 (168)
T 2pt5_A           80 LGANEEALNFMKSRGTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFEERRKIYSKADIKV-K------------G  146 (168)
T ss_dssp             HHTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHHHHHHHHTTSSEEE-E------------C
T ss_pred             EeCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHHHhCCEEE-C------------C
Confidence            566666666666 68999999999999999 433 35431 234567777887777675689988 4            4


Q ss_pred             CCCHHHHHHHHHHHhhh
Q 023749          250 AVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       250 ~~tpeeva~~I~~~i~~  266 (278)
                      ..++++++++|.+++.+
T Consensus       147 ~~~~~~~~~~i~~~l~~  163 (168)
T 2pt5_A          147 EKPPEEVVKEILLSLEG  163 (168)
T ss_dssp             SSCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            58999999999999875

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.83  E-value=3.4e-20  Score=160.98  Aligned_cols=158  Identities=15%  Similarity=0.103  Sum_probs=109.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC--CCChHHHHHhhchhH--hH-----------------
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKG--YQ-----------------  150 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g--~~~i~ei~~~~ge~~--fr-----------------  150 (278)
                      +.+.|.|.|++||||||+|+.||++||++|+| +++++....  +.+ .+.|...++..  |+                 
T Consensus         5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~   82 (201)
T 3fdi_A            5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYS-KEVLERFDEKPMNFAFIPVPAGGTTISLEQDI   82 (201)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCC-HHHHHHHhhhchhHHHHHhccccccccccHHH
Confidence            45789999999999999999999999999999 777665432  134 24555555543  22                 


Q ss_pred             -HHHHHHHHHHH--cCCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh--hcCCCCCCChHHHHHHHHHHhhh
Q 023749          151 -QAETEVLKQLS--SMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM--DHSGFPESEVLPQLFALYKEMRD  225 (278)
Q Consensus       151 -~~e~~vl~~l~--~~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R--~~r~rp~~~~~~~l~~~~~er~~  225 (278)
                       ..+.+++.+++  ..+++|+...++.++.+.+    ++++.|||++|++++.+|  ...+++.++..+.+.++..+|.+
T Consensus        83 ~~~~~~~i~~la~~~~~~~Vi~Gr~g~~vl~~~----~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~~~d~~R~~  158 (201)
T 3fdi_A           83 AIRQFNFIRKKANEEKESFVIVGRCAEEILSDN----PNMISAFILGDKDTKTKRVMEREGVDEKTALNMMKKMDKMRKV  158 (201)
T ss_dssp             HHHHHHHHHHHHHTSCCCEEEESTTHHHHTTTC----TTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCEEEEECCcchhcCCC----CCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence             46778888898  7778888643332221211    146899999999999999  33456655566778777788877


Q ss_pred             cccc-----------CcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          226 GYAT-----------ADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       226 ~Y~~-----------AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                      +|+.           +|++||            |+.++++++++.|++++...
T Consensus       159 ~y~~~~~~~~~~~~~~dl~Id------------t~~l~~eevv~~I~~~i~~~  199 (201)
T 3fdi_A          159 YHNFYCESKWGDSRTYDICIK------------IGKVDVDTATDMIIKYIDSR  199 (201)
T ss_dssp             HHHHHCSSCTTBGGGCSEEEE------------ESSSCHHHHHHHHHHHHHTC
T ss_pred             HHHHHhCCCCCCcccCCEEEE------------CCCCCHHHHHHHHHHHHHHh
Confidence            7653           689998            78999999999999998764

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=99.81  E-value=7.1e-20  Score=161.92  Aligned_cols=157  Identities=17%  Similarity=0.211  Sum_probs=112.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH--hCCCChHHHHHhhchh-----------------------
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA--AGGESAAKAFRESDEK-----------------------  147 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~--~g~~~i~ei~~~~ge~-----------------------  147 (278)
                      .++|.|.|++||||||+|+.||++||++++|.|.+.+..  .| .+. +.+...++.                       
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g-~~~-~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~   91 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSA-VGE-QFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP   91 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC--------------------------------------
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcC-CCH-HHHHHHHhhccccHHHHHhccccccccccccc
Confidence            468999999999999999999999999999965543321  22 221 222222211                       


Q ss_pred             --------HhHHHHHHHHHHHHcCCCEEEE-eCCceeec--hhHHHhhhCCcEEEEEcCHHHHHhh--hcCCCCCCChHH
Q 023749          148 --------GYQQAETEVLKQLSSMGRLVVC-AGNGAVQS--SANLALLRHGISLWIDVPPGMVARM--DHSGFPESEVLP  214 (278)
Q Consensus       148 --------~fr~~e~~vl~~l~~~~~~VI~-~g~g~v~~--~~~~~~L~~~~vV~L~a~~e~l~~R--~~r~rp~~~~~~  214 (278)
                              .....+.+++.+++..+++||. +|+++++.  +.+    +++++|||++|++++.+|  +..+++.++..+
T Consensus        92 ~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg~vl~~~~~~----~~~~~VfL~A~~e~r~~Ri~~~~~~~~~~a~~  167 (223)
T 3hdt_A           92 NDKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGYVLDQDEDI----ERLIRIFVYTDKVKKVQRVMEVDCIDEERAKR  167 (223)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHSCEEEESTTHHHHHHHCTTC----CEEEEEEEECCHHHHHHHHHHHHTCCHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcchhcccccCC----CCeEEEEEECCHHHHHHHHHHhcCCCHHHHHH
Confidence                    1123455677888877788887 66565552  211    236899999999999999  444666556677


Q ss_pred             HHHHHHHHhhhccc-----------cCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          215 QLFALYKEMRDGYA-----------TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       215 ~l~~~~~er~~~Y~-----------~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                      .+.+.+++|.++|+           .+|++||            |+.++++++++.|.+++...
T Consensus       168 ~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~Id------------T~~l~~eevv~~I~~~i~~~  219 (223)
T 3hdt_A          168 RIKKIEKERKEYYKYFTGSEWHSMKNYDLPIN------------TTKLTLEETAELIKAYIRLK  219 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEE------------CTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCcccCeEEEE------------CCCCCHHHHHHHHHHHHHHh
Confidence            88888899998886           6899998            78999999999999999753

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.77  E-value=2.6e-17  Score=137.42  Aligned_cols=154  Identities=13%  Similarity=0.112  Sum_probs=105.1

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHH-----H-HhCCCChHHHHHhhchhHhHHHHHHHHHHHH-cC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF-----E-AAGGESAAKAFRESDEKGYQQAETEVLKQLS-SM  163 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~-----~-~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~-~~  163 (278)
                      .+|..|+|+|++||||||+++.|++.+|++++|.|.+.+     + ..| ..+.+   ..+...++.++.. +..+. ..
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g-~~~~~---~~~~~~~~~~~~~-~~~~~~~~   80 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASG-EPLND---DDRKPWLQALNDA-AFAMQRTN   80 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTT-CCCCH---HHHHHHHHHHHHH-HHHHHHHC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcC-cCCCc---cccccHHHHHHHH-HHHHHhcC
Confidence            457899999999999999999999999999999998742     2 234 33222   2234455555543 33333 33


Q ss_pred             CCEEEEeCCceeechhHHHhhh-C--C-cEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhc-cc-cCcEEEec
Q 023749          164 GRLVVCAGNGAVQSSANLALLR-H--G-ISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDG-YA-TADVTVSL  236 (278)
Q Consensus       164 ~~~VI~~g~g~v~~~~~~~~L~-~--~-~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~-Y~-~AD~vId~  236 (278)
                      ..+|++++.   ..+.+++.++ .  + .+|||++|++++.+| ..|+....+ ...+..++.++.+. |. .+|++|| 
T Consensus        81 ~~~vi~~~~---~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Id-  155 (175)
T 1knq_A           81 KVSLIVCSA---LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFK-TQMLVTQFETLQEPGADETDVLVVD-  155 (175)
T ss_dssp             SEEEEECCC---CSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCCC-HHHHHHHHHHCCCCCTTCTTEEEEE-
T ss_pred             CcEEEEeCc---hHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCCCc-hHHHHHHHHhhhCcccCCCCeEEEe-
Confidence            446666542   3455666665 2  3 699999999999999 555422212 34566666665555 55 5899998 


Q ss_pred             CcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          237 QKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       237 ~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                                 ++ .++++++++|.+++..
T Consensus       156 -----------~~-~~~~~~~~~i~~~l~~  173 (175)
T 1knq_A          156 -----------ID-QPLEGVVASTIEVIKK  173 (175)
T ss_dssp             -----------CS-SCHHHHHHHHHHHHHC
T ss_pred             -----------CC-CCHHHHHHHHHHHHhc
Confidence                       34 7999999999998853

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.76  E-value=1.5e-17  Score=136.73  Aligned_cols=156  Identities=17%  Similarity=0.149  Sum_probs=99.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-----CC----hHHHHHhhchhHhHHHHHHHHHHHHcCC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ES----AAKAFRESDEKGYQQAETEVLKQLSSMG  164 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-----~~----i~ei~~~~ge~~fr~~e~~vl~~l~~~~  164 (278)
                      +.|+|+|+|||||||+|+.| +.+|+++++.|+++++....     ..    ...++...++..+.......+..  ..+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~   78 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGT--SNH   78 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS--CCC
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh--cCC
Confidence            68999999999999999999 99999999999988775420     01    11222223444454433332211  334


Q ss_pred             CEEEEeCCceeechhHHHhhh-----CCcEEEEEcCHHHHHhh-hcCCCCCC-ChHHHHHHHHHH-----hhhccccCcE
Q 023749          165 RLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHSGFPES-EVLPQLFALYKE-----MRDGYATADV  232 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~~~~~L~-----~~~vV~L~a~~e~l~~R-~~r~rp~~-~~~~~l~~~~~e-----r~~~Y~~AD~  232 (278)
                      ..||.+|  . ....+++.++     ..++|||++|++++.+| ..|+++.. ...+.+.+.+..     ....+..||+
T Consensus        79 ~~vi~dg--~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ad~  155 (179)
T 3lw7_A           79 DLVVFDG--V-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVIAMADY  155 (179)
T ss_dssp             SCEEEEC--C-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHHHHTCSE
T ss_pred             CeEEEeC--C-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhHHHhCCE
Confidence            4566655  2 4455555443     33799999999999999 66766421 223344333311     1122336999


Q ss_pred             EEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          233 TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       233 vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                      +|++            ++ ++++++++|.+++...+
T Consensus       156 vId~------------~~-~~~~~~~~i~~~l~~~l  178 (179)
T 3lw7_A          156 IITN------------DS-NYEEFKRRCEEVTDRVL  178 (179)
T ss_dssp             EEEC------------CS-CHHHHHHHHHHHHHHHC
T ss_pred             EEEC------------CC-CHHHHHHHHHHHHHHHh
Confidence            9984            34 99999999999987654

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.74  E-value=9.1e-17  Score=137.78  Aligned_cols=156  Identities=11%  Similarity=0.043  Sum_probs=109.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH------HhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE------AAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR  165 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~------~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~  165 (278)
                      +|..|+|+|++||||||+++.|++.+|+.+++.|.+...      ..| ..+.+   ......+...+..+...+.....
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g-~~~~~---~~~~~~~~~~~~~~~~~~~~g~~  103 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRG-IPLTD---EDRWPWLRSLAEWMDARADAGVS  103 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTT-CCCCH---HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcC-CCCCC---cccccHHHHHHHHHHHHHhcCCC
Confidence            588999999999999999999999999999999987421      223 22211   11223445555554444444456


Q ss_pred             EEEEeCCceeechhHHHhhh----CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccc-cCcEEEecCcc
Q 023749          166 LVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYA-TADVTVSLQKV  239 (278)
Q Consensus       166 ~VI~~g~g~v~~~~~~~~L~----~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~-~AD~vId~~~v  239 (278)
                      .|++++   ...+..++.++    ...+|||++|++++.+| ..|+.... ..+.+..+++++.+.|. .++++||    
T Consensus       104 viid~~---~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~-~~~~l~~~~~~~~~~~~~~~~~~Id----  175 (200)
T 4eun_A          104 TIITCS---ALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFM-PASLLQSQLATLEALEPDESGIVLD----  175 (200)
T ss_dssp             EEEEEC---CCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSS-CGGGHHHHHHHCCCCCTTSCEEEEE----
T ss_pred             EEEEch---hhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCC-CHHHHHHHHHHhCCCCCCCCeEEEE----
Confidence            677654   23455555554    24789999999999999 55533222 24567888899888887 4899998    


Q ss_pred             cccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          240 ASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       240 a~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                              ++ .++++++++|.+++....
T Consensus       176 --------~~-~~~~e~~~~I~~~l~~~~  195 (200)
T 4eun_A          176 --------LR-QPPEQLIERALTWLDIAP  195 (200)
T ss_dssp             --------TT-SCHHHHHHHHHHHHCCCG
T ss_pred             --------CC-CCHHHHHHHHHHHHHhcc
Confidence                    33 499999999999997543

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.73  E-value=1.6e-17  Score=138.68  Aligned_cols=155  Identities=10%  Similarity=-0.009  Sum_probs=96.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceec--CchHHHHHhCC-------CChHHHHHhhchhHhHHHHHHH---HHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAAGG-------ESAAKAFRESDEKGYQQAETEV---LKQ  159 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD--~D~li~~~~g~-------~~i~ei~~~~ge~~fr~~e~~v---l~~  159 (278)
                      +++.|+|+|+|||||||+|+.|++.++.++++  .|.+++...+.       .++.+.+...++..|+..+..+   +..
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA   81 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence            57899999999999999999999999988765  78777654331       0111111122344566555433   344


Q ss_pred             HHcCCCEEEEeCCceee-----chhHHHhhh-CC-cEEEEEcCHHHHHhh-hcCC-CCCCChHHHHHHHHHHhhhccccC
Q 023749          160 LSSMGRLVVCAGNGAVQ-----SSANLALLR-HG-ISLWIDVPPGMVARM-DHSG-FPESEVLPQLFALYKEMRDGYATA  230 (278)
Q Consensus       160 l~~~~~~VI~~g~g~v~-----~~~~~~~L~-~~-~vV~L~a~~e~l~~R-~~r~-rp~~~~~~~l~~~~~er~~~Y~~A  230 (278)
                      +...+..||.++  .+.     .+.+++.++ .+ .+|||++|++++.+| ..|+ ++..    ....+++. ...|..+
T Consensus        82 ~~~~g~~vi~~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~~~~~~----~~~~~~~~-~~~~~~~  154 (178)
T 1qhx_A           82 MARAGARIIIDD--VFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDRVAG----MAAKQAYV-VHEGVEY  154 (178)
T ss_dssp             HHHTTCEEEEEE--CCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSSCTT----HHHHHTTG-GGTTCCC
T ss_pred             HHhcCCeEEEEe--ccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhCCcccc----hhhhhchh-hccCCCC
Confidence            444444444332  221     123344454 34 579999999999999 5443 3322    11222222 1223458


Q ss_pred             cEEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749          231 DVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN  265 (278)
Q Consensus       231 D~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~  265 (278)
                      |++||            |++.+|++++++|.+.+.
T Consensus       155 d~~id------------t~~~~~~~~~~~I~~~l~  177 (178)
T 1qhx_A          155 DVEVD------------TTHKESIECAWAIAAHVV  177 (178)
T ss_dssp             SEEEE------------TTSSCHHHHHHHHHTTCC
T ss_pred             cEEEE------------CCCCCHHHHHHHHHHHhc
Confidence            99998            788999999999987653

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.72  E-value=2.1e-18  Score=146.39  Aligned_cols=154  Identities=17%  Similarity=0.191  Sum_probs=94.2

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHH-hCCceecCchHHHHHhCCCChHHHHHhhchhHhH--HHHHHHHH---HHH-cC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADA-LRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ--QAETEVLK---QLS-SM  163 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~-Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr--~~e~~vl~---~l~-~~  163 (278)
                      .++++|+|+|+|||||||+|+.|++. +|++++|+|+++++........+.+    +..|.  ..+..++.   .+. ..
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~~~~~~~~~----~~~~~~r~~~~~~~~~l~~~~~~~   83 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTEL----DTHIIEEKDEDRLLDFMEPIMVSR   83 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC----------CCCCCHHHHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhhhhhHHHHh----hhcccCCCCHHHHHHHHHHHHhcc
Confidence            35789999999999999999999999 7999999999988742101111111    11121  11222222   222 22


Q ss_pred             CCEEEEeCCceeechhHHHhhh---CCcEEEEEcCHHHHHhh-hcCCCCCCChHHH-----HHHHHHHhhhccccCcEEE
Q 023749          164 GRLVVCAGNGAVQSSANLALLR---HGISLWIDVPPGMVARM-DHSGFPESEVLPQ-----LFALYKEMRDGYATADVTV  234 (278)
Q Consensus       164 ~~~VI~~g~g~v~~~~~~~~L~---~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~-----l~~~~~er~~~Y~~AD~vI  234 (278)
                      +..|+.        ..+...++   .+.+|||++|++++.+| ..|++........     +..++.+|.+.|. +|++|
T Consensus        84 g~~vi~--------~~~~~~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~q~~~~l~~~~~~~y~-~~~vi  154 (184)
T 1y63_A           84 GNHVVD--------YHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYE-DDIVL  154 (184)
T ss_dssp             SEEEEE--------CSCCTTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC-GGGEE
T ss_pred             CCEEEe--------CchHhhhhhccCCEEEEEECCHHHHHHHHHhCCCChhhhHhhHHHHHHHHHHHHHHHHhc-cCcEE
Confidence            222222        11222232   56899999999999999 5554331111112     3444678888886 68888


Q ss_pred             ecCcccccccccCCCCCCHHHH---HHHHHHHhhhcCC
Q 023749          235 SLQKVASQLGYDDLDAVTTEDM---TLEVKWLYNASIS  269 (278)
Q Consensus       235 d~~~va~~~~~~Dts~~tpeev---a~~I~~~i~~~~~  269 (278)
                      +            |++.+++++   +++|.+.+.....
T Consensus       155 ~------------~n~~~~~~~~~~v~~i~~~l~~~~~  180 (184)
T 1y63_A          155 V------------RENDTLEQMAATVEEIRERVEVLKV  180 (184)
T ss_dssp             E------------EECSSHHHHHHHHHHHHHHHHHHC-
T ss_pred             E------------CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            7            346799999   7777777765543

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.72  E-value=1.8e-16  Score=130.83  Aligned_cols=146  Identities=14%  Similarity=0.278  Sum_probs=100.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCC-
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN-  172 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~-  172 (278)
                      +.|+|+|+|||||||+|+.|++.+|++++|.|.+......   +..+|.        .     ...+.. +..|+.... 
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~---~~~~~~--------~-----~~~l~~-~~~vi~dr~~   64 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSG---NEKLFE--------H-----FNKLAD-EDNVIIDRFV   64 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTC---HHHHHH--------H-----HHHHTT-CCSEEEESCH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhH---HHHHHH--------H-----HHHHHh-CCCeEEeeee
Confidence            4799999999999999999999999999999988765331   222221        1     112222 223333210 


Q ss_pred             ------------ceeechhHHHhhh-----CCcEEEEEcCHHHHHhh-hcCCCCCCC--hHHHHHHHHHHhhhccccCcE
Q 023749          173 ------------GAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHSGFPESE--VLPQLFALYKEMRDGYATADV  232 (278)
Q Consensus       173 ------------g~v~~~~~~~~L~-----~~~vV~L~a~~e~l~~R-~~r~rp~~~--~~~~l~~~~~er~~~Y~~AD~  232 (278)
                                  .......++..+.     .+++|||++|++++.+| ..|+++..+  ..+.+.+.|+++.+.|..+++
T Consensus        65 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (173)
T 3kb2_A           65 YSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILELYREVMSNAGLHTY  144 (173)
T ss_dssp             HHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHHTCSSCEE
T ss_pred             cchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHhhcCCCEE
Confidence                        0111223333332     56899999999999999 555555433  345677788888888877888


Q ss_pred             EEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          233 TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       233 vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                      +||            ++++++++++++|.+.++...
T Consensus       145 ~id------------~~~~~~~ev~~~I~~~~~~~~  168 (173)
T 3kb2_A          145 SWD------------TGQWSSDEIAKDIIFLVELEH  168 (173)
T ss_dssp             EEE------------TTTSCHHHHHHHHHHHHHHGG
T ss_pred             EEE------------CCCCCHHHHHHHHHHHHhCCC
Confidence            998            567899999999999998754

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.71  E-value=5.5e-17  Score=136.15  Aligned_cols=159  Identities=14%  Similarity=0.201  Sum_probs=99.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh-CCC----ChHHHHHhhchhHhHHHHHHHHHHHHc--CC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGE----SAAKAFRESDEKGYQQAETEVLKQLSS--MG  164 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~-g~~----~i~ei~~~~ge~~fr~~e~~vl~~l~~--~~  164 (278)
                      +++.|+|+|++||||||+|+.|++.+|++++|.|+++++.. ++.    .+.+++.. |...+.+....++.....  .+
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~i~~~~~   83 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKN-GEIVPSIVTVKLLKNAIDANQG   83 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTSTT
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhcCC
Confidence            35689999999999999999999999999999999877653 212    23344432 333334444444444332  23


Q ss_pred             CEEEEeCCceeechhHHHhh----h----CCcEEEEEcCHHHHHhh-hcC----CCCCCC---hHHHHHHHHHHhhhc--
Q 023749          165 RLVVCAGNGAVQSSANLALL----R----HGISLWIDVPPGMVARM-DHS----GFPESE---VLPQLFALYKEMRDG--  226 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~~~~~L----~----~~~vV~L~a~~e~l~~R-~~r----~rp~~~---~~~~l~~~~~er~~~--  226 (278)
                      ..+|..|  .+....++..+    .    .+++|||++|++++.+| ..|    +++...   ....+..+++++.+.  
T Consensus        84 ~~vi~d~--~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~  161 (194)
T 1qf9_A           84 KNFLVDG--FPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVID  161 (194)
T ss_dssp             CCEEEET--CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHH
T ss_pred             CCEEEeC--cCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHH
Confidence            3444443  22233333222    2    35799999999999999 333    233222   223344455555443  


Q ss_pred             -cccCc--EEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          227 -YATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       227 -Y~~AD--~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                       |+.+|  ++||+            + .++++++++|.+++.+
T Consensus       162 ~~~~~~~~~~id~------------~-~~~~~~~~~i~~~l~~  191 (194)
T 1qf9_A          162 HYNKFDKVKIIPA------------N-RDVNEVYNDVENLFKS  191 (194)
T ss_dssp             HHHHTTCEEEEEC------------S-SCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCEEEEEC------------C-CCHHHHHHHHHHHHHH
Confidence             34577  67773            3 8999999999999875

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.71  E-value=8.6e-17  Score=137.55  Aligned_cols=158  Identities=15%  Similarity=0.096  Sum_probs=99.1

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH-hCC----CChHHHHHhhchhHhHHHHHHHHHHHHc--
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGG----ESAAKAFRESDEKGYQQAETEVLKQLSS--  162 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~-~g~----~~i~ei~~~~ge~~fr~~e~~vl~~l~~--  162 (278)
                      ...++.|+|+|+|||||||+|+.|++.+|++++++|+++++. .++    ..+.+++. .|+..|++....++.+...  
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~   95 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLD-AGDLVPSDLTNELVDDRLNNP   95 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTSG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHH-cCCcccHHHHHHHHHHHHhcc
Confidence            357889999999999999999999999999999999988763 221    12333333 2433455444444444332  


Q ss_pred             --CCCEEEEeCCceeechh---HH-Hhhh-----CCcEEEEEcCHHHHHhh-hcCCCCCCChHHH----HHHHHHHhhh-
Q 023749          163 --MGRLVVCAGNGAVQSSA---NL-ALLR-----HGISLWIDVPPGMVARM-DHSGFPESEVLPQ----LFALYKEMRD-  225 (278)
Q Consensus       163 --~~~~VI~~g~g~v~~~~---~~-~~L~-----~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~----l~~~~~er~~-  225 (278)
                        ...+|+ .|.  .....   .+ ..+.     .+++|||++|++++.+| ..|+++... .+.    +...+..+.+ 
T Consensus        96 ~~~~~vIl-dg~--~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~-~e~~~~r~~~~~~~~~~~  171 (201)
T 2cdn_A           96 DAANGFIL-DGY--PRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDT-DDVILNRMKVYRDETAPL  171 (201)
T ss_dssp             GGTTCEEE-ESC--CCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCS-HHHHHHHHHHHHHHTTTH
T ss_pred             cCCCeEEE-ECC--CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHhhHHH
Confidence              223333 321  11111   11 1232     46899999999999999 666665322 222    3333344333 


Q ss_pred             --ccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749          226 --GYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN  265 (278)
Q Consensus       226 --~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~  265 (278)
                        .|..++++||+             +.++++++++|.+.+.
T Consensus       172 ~~~~~~~~~~Id~-------------~~~~eev~~~I~~~l~  200 (201)
T 2cdn_A          172 LEYYRDQLKTVDA-------------VGTMDEVFARALRALG  200 (201)
T ss_dssp             HHHTTTTEEEEEC-------------CSCHHHHHHHHHHHTT
T ss_pred             HHHhcCcEEEEeC-------------CCCHHHHHHHHHHHHc
Confidence              23346778873             4799999999998874

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.70  E-value=5.3e-17  Score=137.15  Aligned_cols=161  Identities=13%  Similarity=0.170  Sum_probs=99.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh-CC----CChHHHHHhhchhHhHHHHHHHHHH----HHc
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GG----ESAAKAFRESDEKGYQQAETEVLKQ----LSS  162 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~-g~----~~i~ei~~~~ge~~fr~~e~~vl~~----l~~  162 (278)
                      +++.|+|+|+|||||||+|+.|++.+|++++|.|++++... ++    ..+.+++. .|+..+.+.....+.+    ...
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~   86 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIME-KGQLVPLETVLDMLRDAMVAKVN   86 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHhccc
Confidence            57899999999999999999999999999999999887632 10    23344443 2443333332222222    222


Q ss_pred             CCCEEEEeCCceeechhHHHh----hh-CCcEEEEEcCHHHHHhh-hcC----CCCCCC---hHHHHHHHHHHhhhc---
Q 023749          163 MGRLVVCAGNGAVQSSANLAL----LR-HGISLWIDVPPGMVARM-DHS----GFPESE---VLPQLFALYKEMRDG---  226 (278)
Q Consensus       163 ~~~~VI~~g~g~v~~~~~~~~----L~-~~~vV~L~a~~e~l~~R-~~r----~rp~~~---~~~~l~~~~~er~~~---  226 (278)
                      .+..||..|.  .......+.    +. .+++|||++|++++.+| ..|    ++....   ....+..++.++.+.   
T Consensus        87 ~~~~vi~d~~--~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  164 (196)
T 2c95_A           87 TSKGFLIDGY--PREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAF  164 (196)
T ss_dssp             TCSCEEEESC--CCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHH
T ss_pred             cCCcEEEeCC--CCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            2334444431  222222222    23 67899999999999999 333    222211   223455556665553   


Q ss_pred             cccCcE--EEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          227 YATADV--TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       227 Y~~AD~--vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                      |..++.  +||            + +.++++++++|.+++.+.+
T Consensus       165 ~~~~~~~~~Id------------~-~~~~e~v~~~i~~~l~~~~  195 (196)
T 2c95_A          165 YEKRGIVRKVN------------A-EGSVDSVFSQVCTHLDALL  195 (196)
T ss_dssp             HHHHTCEEEEE------------C-CSCHHHHHHHHHHHHHHHC
T ss_pred             HHhcCcEEEEE------------C-CCCHHHHHHHHHHHHHHhc
Confidence            444553  466            2 4899999999999987654

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.70  E-value=1.2e-16  Score=134.33  Aligned_cols=156  Identities=17%  Similarity=0.162  Sum_probs=99.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH-hCC----CChHHHHHhhchhHhHHHHHHHHHHHHcCCCE
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGG----ESAAKAFRESDEKGYQQAETEVLKQLSSMGRL  166 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~-~g~----~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~  166 (278)
                      +|+.|+|+|+|||||||+|+.|++.+|++++++|+++++. .++    ..+.+++.. |+..++.....++...... + 
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~l~~-~-   79 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMER-GDLVPDDLILELIREELAE-R-   79 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHCCS-E-
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHhcC-C-
Confidence            5789999999999999999999999999999999888764 221    233444543 4444555555555555433 2 


Q ss_pred             EEEeCCceeechhHHH----hhh-----CCcEEEEEcCHHHHHhh-hcC----CCCCCCh---HHHHHHHHHHhhh---c
Q 023749          167 VVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM-DHS----GFPESEV---LPQLFALYKEMRD---G  226 (278)
Q Consensus       167 VI~~g~g~v~~~~~~~----~L~-----~~~vV~L~a~~e~l~~R-~~r----~rp~~~~---~~~l~~~~~er~~---~  226 (278)
                      +|..|  ......+..    .+.     .+.+|||++|++++.+| ..|    +++....   ...+...+.++.+   .
T Consensus        80 ~i~dg--~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~  157 (186)
T 3cm0_A           80 VIFDG--FPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGY  157 (186)
T ss_dssp             EEEES--CCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            44443  222222221    222     35799999999999999 433    4543221   1233444444333   3


Q ss_pred             cccC--cEEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749          227 YATA--DVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN  265 (278)
Q Consensus       227 Y~~A--D~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~  265 (278)
                      |+.+  +++||+             +.++++++++|.+.+.
T Consensus       158 ~~~~~~~~~id~-------------~~~~~~v~~~i~~~l~  185 (186)
T 3cm0_A          158 YEARGVLKRVDG-------------LGTPDEVYARIRAALG  185 (186)
T ss_dssp             HHHTTCEEEEEC-------------CSCHHHHHHHHHHHHT
T ss_pred             HHhcCcEEEEEC-------------CCCHHHHHHHHHHHhc
Confidence            4434  467772             4799999999998763

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.70  E-value=1.9e-17  Score=139.08  Aligned_cols=149  Identities=19%  Similarity=0.222  Sum_probs=97.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHH--HHHH---HHHHHcCCCE
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQA--ETEV---LKQLSSMGRL  166 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~--e~~v---l~~l~~~~~~  166 (278)
                      +++.|+|+|+|||||||+++.|++.+|++++++|+++++...       +...++..++..  +..+   +......+..
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   82 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQL-------YDGYDEEYDCPILDEDRVVDELDNQMREGGV   82 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTC-------EEEEETTTTEEEECHHHHHHHHHHHHHHCCE
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcch-------hhhhhhhhcCccCChHHHHHHHHHHHhcCCE
Confidence            467899999999999999999999999999999998876521       111222222110  1111   2222222444


Q ss_pred             EEEeCCceeechhHHHhhh---CCcEEEEEcCHHHHHhh-hcCCCCCCC-----hHHHHHHHHHHhhhccccCcEEEecC
Q 023749          167 VVCAGNGAVQSSANLALLR---HGISLWIDVPPGMVARM-DHSGFPESE-----VLPQLFALYKEMRDGYATADVTVSLQ  237 (278)
Q Consensus       167 VI~~g~g~v~~~~~~~~L~---~~~vV~L~a~~e~l~~R-~~r~rp~~~-----~~~~l~~~~~er~~~Y~~AD~vId~~  237 (278)
                      |+...        +...++   .+.+|||++|++++.+| ..|++....     ..+.+..++.+|.+.|. +|++|+  
T Consensus        83 vv~~~--------~~~~~~~~~~~~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~~i~--  151 (180)
T 3iij_A           83 IVDYH--------GCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYK-EEIVHQ--  151 (180)
T ss_dssp             EEECS--------CCTTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC-GGGEEE--
T ss_pred             EEEec--------hhhhcchhcCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CCeEEE--
Confidence            54321        111222   57899999999999999 655543111     12345677888888887 688888  


Q ss_pred             cccccccccCCCCCCHHHH---HHHHHHHhhhcC
Q 023749          238 KVASQLGYDDLDAVTTEDM---TLEVKWLYNASI  268 (278)
Q Consensus       238 ~va~~~~~~Dts~~tpeev---a~~I~~~i~~~~  268 (278)
                                |++.+++++   +++|++++.+..
T Consensus       152 ----------~~~~~~~ev~~~v~~i~~~l~~~~  175 (180)
T 3iij_A          152 ----------LPSNKPEELENNVDQILKWIEQWI  175 (180)
T ss_dssp             ----------EECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------cCCCCHHHHHHHHHHHHHHHHHHH
Confidence                      567999999   677777766543

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.69  E-value=1.4e-16  Score=134.86  Aligned_cols=160  Identities=14%  Similarity=0.102  Sum_probs=98.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh--C---CCChHHHHHhhchhHhHHHHHHHHH----HHHc
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--G---GESAAKAFRESDEKGYQQAETEVLK----QLSS  162 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~--g---~~~i~ei~~~~ge~~fr~~e~~vl~----~l~~  162 (278)
                      +++.|+|+|+|||||||+|+.|++.+|++++|+|+++++..  +   +..+.+++. .|+..+.+.....+.    ....
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~   89 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIME-RGDLVPSGIVLELLKEAMVASLG   89 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhcccc
Confidence            46799999999999999999999999999999999876644  1   022334443 233333322222222    2222


Q ss_pred             CCCEEEEeCCceeechhHHHhh-----hCCcEEEEEcCHHHHHhh-hcCCCCCC-------ChHHHHHHHHHHhhh---c
Q 023749          163 MGRLVVCAGNGAVQSSANLALL-----RHGISLWIDVPPGMVARM-DHSGFPES-------EVLPQLFALYKEMRD---G  226 (278)
Q Consensus       163 ~~~~VI~~g~g~v~~~~~~~~L-----~~~~vV~L~a~~e~l~~R-~~r~rp~~-------~~~~~l~~~~~er~~---~  226 (278)
                      .+..||..|  .+....++..+     ..+++|||++|++++.+| ..|+.+..       .....+..++.++.+   .
T Consensus        90 ~~~~vi~dg--~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  167 (199)
T 2bwj_A           90 DTRGFLIDG--YPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAY  167 (199)
T ss_dssp             SCSCEEEET--CCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCccEEEeC--CCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            334455443  33333333222     257899999999999999 55543211       111223334555543   4


Q ss_pred             ccc-Cc-EEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          227 YAT-AD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       227 Y~~-AD-~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                      |.. ++ ++||             ++.++++++++|.+++...
T Consensus       168 ~~~~~~~~~id-------------~~~~~e~v~~~i~~~l~~~  197 (199)
T 2bwj_A          168 YETKTQLHKIN-------------AEGTPEDVFLQLCTAIDSI  197 (199)
T ss_dssp             HHHHSEEEEEE-------------TTSCHHHHHHHHHHHHHHH
T ss_pred             HHhcCCEEEEE-------------CCCCHHHHHHHHHHHHHHh
Confidence            543 34 5676             3579999999999998754

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.68  E-value=1.7e-16  Score=132.84  Aligned_cols=153  Identities=12%  Similarity=0.162  Sum_probs=90.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCcee-cCchHHHHHhCCCChHHHHHhhchhHhH------HHHHHHHHHHHc-C
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-DSDSLVFEAAGGESAAKAFRESDEKGYQ------QAETEVLKQLSS-M  163 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i-D~D~li~~~~g~~~i~ei~~~~ge~~fr------~~e~~vl~~l~~-~  163 (278)
                      +++.|+|+|+|||||||+|+.|++.+|++++ |.+.+     | ..+.+++. .|...|+      +....++..+.. .
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~-----g-~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~l~~~   76 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEM-----G-QALRKLTP-GFSGDPQEHPMWIPLMLDALQYASREA   76 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHH-----H-HHHHHTST-TCCSCGGGSTTHHHHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhh-----H-HHHHHhCc-cccchhhhhHHHHHHHHHHHHHHHHhC
Confidence            5789999999999999999999999999998 53221     1 12222222 2222222      212233444333 2


Q ss_pred             CCEEEEeCCceeec----hhHHHhhh-CCc---EEEEEcCHHHHHhh-hcCC-CCCCChHHHHHHHHHHhhhccccCcEE
Q 023749          164 GRLVVCAGNGAVQS----SANLALLR-HGI---SLWIDVPPGMVARM-DHSG-FPESEVLPQLFALYKEMRDGYATADVT  233 (278)
Q Consensus       164 ~~~VI~~g~g~v~~----~~~~~~L~-~~~---vV~L~a~~e~l~~R-~~r~-rp~~~~~~~l~~~~~er~~~Y~~AD~v  233 (278)
                      +..||..+  ....    ...++.++ .+.   .|||++|++++.+| ..|+ ++..  .+.+..+++++.+. ..++ +
T Consensus        77 g~~vi~d~--~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~~~--~~~~~~~~~~~~~~-~~~~-~  150 (183)
T 2vli_A           77 AGPLIVPV--SISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQVN--VGTVEDRLNELRGE-QFQT-H  150 (183)
T ss_dssp             SSCEEEEE--CCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----CC--HHHHHHHHHHHTSG-GGCS-E
T ss_pred             CCcEEEee--eccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccchh--HHHHHHHHHhhccc-ccce-E
Confidence            44455332  1111    22333444 444   39999999999999 5443 4422  35676777776654 4355 7


Q ss_pred             EecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749          234 VSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS  269 (278)
Q Consensus       234 Id~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~  269 (278)
                      ||            +++.++++++++|.+++...+.
T Consensus       151 Id------------~~~~~~~~~~~~I~~~l~~~~~  174 (183)
T 2vli_A          151 ID------------TAGLGTQQVAEQIAAQVGLTLA  174 (183)
T ss_dssp             EE------------CTTCCHHHHHHHHHHHHTCCCC
T ss_pred             ee------------CCCCCHHHHHHHHHHHHHHhcC
Confidence            77            5678999999999999988774

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.68  E-value=3e-16  Score=140.49  Aligned_cols=156  Identities=10%  Similarity=0.048  Sum_probs=104.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH---hCCcee--cCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCE
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA---LRYYYF--DSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL  166 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~---Lg~~~i--D~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~  166 (278)
                      .++.|+|+|+|||||||+|+.|++.   +|++++  +.|.+.+...+       |...++..++..+...+...... ..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~-------~~~~~e~~~~~~~~~~i~~~l~~-~~   74 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV-------WKEKYEEFIKKSTYRLIDSALKN-YW   74 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS-------CCGGGHHHHHHHHHHHHHHHHTT-SE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHhhC-CE
Confidence            3678999999999999999999998   799988  88887654332       23345566666655556655544 45


Q ss_pred             EEEeCCceeechhHHHhh----h----CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHh---hhcc--ccCcE
Q 023749          167 VVCAGNGAVQSSANLALL----R----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEM---RDGY--ATADV  232 (278)
Q Consensus       167 VI~~g~g~v~~~~~~~~L----~----~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er---~~~Y--~~AD~  232 (278)
                      ||..+  .......+..+    +    .+.+|||++|++++.+| ..|+++..  .+.+..++..+   .+.|  ..+++
T Consensus        75 vIiD~--~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~--~~~l~~~~~~~e~~~~~~~~~~~~~  150 (260)
T 3a4m_A           75 VIVDD--TNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIP--NEVIKKMYEKFDEPGKKYKWDEPFL  150 (260)
T ss_dssp             EEECS--CCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCSSC--HHHHHHHHHHCCCTTSSCGGGCCSE
T ss_pred             EEEeC--CcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCCCC--HHHHHHHHHHhcCccccCCCCCCEE
Confidence            55443  22233333322    1    25799999999999999 66665422  34455544433   3334  35788


Q ss_pred             EEecCcccccccccCCCC-CCHHHHHHHHHHHhhhcCCCC
Q 023749          233 TVSLQKVASQLGYDDLDA-VTTEDMTLEVKWLYNASISDP  271 (278)
Q Consensus       233 vId~~~va~~~~~~Dts~-~tpeeva~~I~~~i~~~~~~~  271 (278)
                      +||.            ++ .++++++++|.+.+.....++
T Consensus       151 ~Id~------------~~~~~~~ei~~~I~~~l~~~~~~~  178 (260)
T 3a4m_A          151 IIDT------------TKDIDFNEIAKKLIEKSKEIPKFY  178 (260)
T ss_dssp             EEET------------TSCCCHHHHHHHHHHHHTSCCCC-
T ss_pred             EEeC------------CCCCCHHHHHHHHHhcccCCCCcc
Confidence            9984            44 689999999999998765543

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.67  E-value=1.9e-17  Score=143.07  Aligned_cols=155  Identities=18%  Similarity=0.157  Sum_probs=97.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH------hC-CCChHHH-------HH----------hhchh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AG-GESAAKA-------FR----------ESDEK  147 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~------~g-~~~i~ei-------~~----------~~ge~  147 (278)
                      +++.|+|+|++||||||+|+.|++.+|++++|+|.+++..      .| ...+.++       |.          ..|+.
T Consensus         2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~~   81 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNED   81 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETTEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCCcc
Confidence            4678999999999999999999999999999999998652      12 1233333       21          12332


Q ss_pred             HhHHHH------------------HHHH---HHHHcCCCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-h-
Q 023749          148 GYQQAE------------------TEVL---KQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-D-  203 (278)
Q Consensus       148 ~fr~~e------------------~~vl---~~l~~~~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~-  203 (278)
                      .++.++                  ..+.   ..+...+.+|+. |...     ....++ .+++|||++|++++.+| . 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi~-g~~~-----~~~~~~~~~~vi~l~a~~e~~~~R~~~  155 (219)
T 2h92_A           82 VTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMD-GRDI-----GTVVLPDADLKVYMIASVEERAERRYK  155 (219)
T ss_dssp             CGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEEE-ESSC-----CCCCCTTCSEEEEEECCHHHHHHHHHH
T ss_pred             chhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEEE-cCCc-----cceecCCCCEEEEEECCHHHHHHHHHH
Confidence            222110                  0010   112233334443 2110     011234 57899999999999998 2 


Q ss_pred             ---cCCCCCCChHHHHHHHHHHhh---------hccccCc-EEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          204 ---HSGFPESEVLPQLFALYKEMR---------DGYATAD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       204 ---~r~rp~~~~~~~l~~~~~er~---------~~Y~~AD-~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                         .|++.  ...+.+.+.+.+|.         +.|..+| ++||            |+++++++++++|.+++..
T Consensus       156 ~~~~r~~~--~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id------------~~~~~~ee~~~~I~~~l~~  217 (219)
T 2h92_A          156 DNQLRGIE--SNFEDLKRDIEARDQYDMNREISPLRKADDAVTLD------------TTGKSIEEVTDEILAMVSQ  217 (219)
T ss_dssp             HHHHTTCC--CCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEE------------CTTCCHHHHHHHHHHHHHT
T ss_pred             HHHhcCcc--cCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEE------------CCCCCHHHHHHHHHHHHhc
Confidence               34442  12455666666554         6666666 8998            5678999999999998864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.67  E-value=5.1e-16  Score=132.78  Aligned_cols=148  Identities=15%  Similarity=0.136  Sum_probs=98.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH------HhCCCChHHHHHhhchhHhHHHHHHHHHHH-HcCCC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE------AAGGESAAKAFRESDEKGYQQAETEVLKQL-SSMGR  165 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~------~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l-~~~~~  165 (278)
                      ++.|+|+|++||||||+|+.|++.+|++++|.|.+...      ..| ....+   ......++.     +... .....
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g-~~~~~---~~~~~~~~~-----l~~~~~~~~~   88 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEG-IPLTD---DDRWPWLAA-----IGERLASREP   88 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHT-CCCCH---HHHHHHHHH-----HHHHHTSSSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcC-CCCCc---hhhHHHHHH-----HHHHHhcCCC
Confidence            56899999999999999999999999999999987522      112 11111   011122222     2222 23344


Q ss_pred             EEEEeCCceeechhHHHhhh-----CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccc-cCcEEEecCc
Q 023749          166 LVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYA-TADVTVSLQK  238 (278)
Q Consensus       166 ~VI~~g~g~v~~~~~~~~L~-----~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~-~AD~vId~~~  238 (278)
                      +|++++.   .....++.+.     ...+|||++|++++.+| ..|+....+ .+.+..+++.+.+.|. .++++||+  
T Consensus        89 vivd~~~---~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Id~--  162 (202)
T 3t61_A           89 VVVSCSA---LKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMP-SSLLQTQLETLEDPRGEVRTVAVDV--  162 (202)
T ss_dssp             CEEECCC---CSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCC-HHHHHHHHHHCCCCTTSTTEEEEES--
T ss_pred             EEEECCC---CCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCC-HHHHHHHHHhcCCCCCCCCeEEEeC--
Confidence            5555332   2344444443     24899999999999999 444321112 4667777887777665 57889983  


Q ss_pred             ccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          239 VASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       239 va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                                + .++++++++|.+++.+
T Consensus       163 ----------~-~~~~e~~~~I~~~l~~  179 (202)
T 3t61_A          163 ----------A-QPLAEIVREALAGLAR  179 (202)
T ss_dssp             ----------S-SCHHHHHHHHHHHHHH
T ss_pred             ----------C-CCHHHHHHHHHHHHHH
Confidence                      4 8999999999999864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.67  E-value=3.5e-16  Score=135.94  Aligned_cols=109  Identities=14%  Similarity=0.157  Sum_probs=73.4

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH------hCCCChHHHHHhhchhHhHHHHHHHHHHHHcC
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESAAKAFRESDEKGYQQAETEVLKQLSSM  163 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~------~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~  163 (278)
                      ..+++.|+|+|+|||||||+|+.||+.+|++++++|+++++.      .| ..+.+++.. |+..+++....++......
T Consensus         2 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g-~~i~~~~~~-g~~~~~~~~~~~i~~~l~~   79 (217)
T 3be4_A            2 NSKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIG-LEAKSIIES-GNFVGDEIVLGLVKEKFDL   79 (217)
T ss_dssp             GGGCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CC-HHHHHHHHH-TCCCCHHHHHHHHHHHHHT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHH-HHHHHHHHC-CCcCCHHHHHHHHHHHHhc
Confidence            345789999999999999999999999999999999998865      23 445555543 5445566555555443221


Q ss_pred             ---CCEEEEeCCceeec---hhHHH-hhh-----CCcEEEEEcCHHHHHhh
Q 023749          164 ---GRLVVCAGNGAVQS---SANLA-LLR-----HGISLWIDVPPGMVARM  202 (278)
Q Consensus       164 ---~~~VI~~g~g~v~~---~~~~~-~L~-----~~~vV~L~a~~e~l~~R  202 (278)
                         +..+|..|  +...   ...+. .+.     .+++|||++|++++.+|
T Consensus        80 ~~~~~~~i~dg--~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R  128 (217)
T 3be4_A           80 GVCVNGFVLDG--FPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIER  128 (217)
T ss_dssp             TTTTTCEEEES--CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHH
T ss_pred             cccCCCEEEeC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence               22333333  2111   11222 221     35899999999999999

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.67  E-value=9.8e-16  Score=128.67  Aligned_cols=159  Identities=14%  Similarity=0.164  Sum_probs=96.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC--CC----ChHHHHHhhchhHhHHHHHHHHH----HH-
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GE----SAAKAFRESDEKGYQQAETEVLK----QL-  160 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g--~~----~i~ei~~~~ge~~fr~~e~~vl~----~l-  160 (278)
                      +++.|+|+|+|||||||+|+.|++.+|+++++.|+++++...  +.    .+.+++. .|+..+.+....++.    .. 
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~   80 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK-EGKIVPVEITISLLKREMDQTM   80 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHHhhh
Confidence            578899999999999999999999999999999999876531  11    1223332 343333332222221    11 


Q ss_pred             H--cCCCEEEEeCCceeechhHHH----hhh----CCcEEEEEcCHHHHHhh-hcC----CCCCCCh---HHHHHHHHHH
Q 023749          161 S--SMGRLVVCAGNGAVQSSANLA----LLR----HGISLWIDVPPGMVARM-DHS----GFPESEV---LPQLFALYKE  222 (278)
Q Consensus       161 ~--~~~~~VI~~g~g~v~~~~~~~----~L~----~~~vV~L~a~~e~l~~R-~~r----~rp~~~~---~~~l~~~~~e  222 (278)
                      .  ..+..||..|  .+....+++    .+.    .+++|||++|++++.+| ..|    +|+....   ...+...+..
T Consensus        81 ~~~~~~~~vi~dg--~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~  158 (196)
T 1tev_A           81 AANAQKNKFLIDG--FPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQS  158 (196)
T ss_dssp             HHCTTCCEEEEES--CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHH
T ss_pred             ccccCCCeEEEeC--CCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHh
Confidence            1  1234455433  333333322    111    35799999999999999 332    4553321   1233334444


Q ss_pred             hhh---ccc-cCcE-EEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          223 MRD---GYA-TADV-TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       223 r~~---~Y~-~AD~-vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                      +.+   .|. .+++ +||            ++ .++++++++|.+.+.+
T Consensus       159 ~~~~~~~y~~~~~~~~id------------~~-~~~~~v~~~i~~~l~~  194 (196)
T 1tev_A          159 TKPIIDLYEEMGKVKKID------------AS-KSVDEVFDEVVQIFDK  194 (196)
T ss_dssp             HHHHHHHHHHTTCEEEEE------------TT-SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCEEEEE------------CC-CCHHHHHHHHHHHHHh
Confidence            443   455 4665 777            34 8999999999998865

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.66  E-value=7.8e-16  Score=133.66  Aligned_cols=159  Identities=13%  Similarity=0.132  Sum_probs=99.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH------hCCCChHHHHHhhchh----HhHH-HHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESAAKAFRESDEK----GYQQ-AETEVLKQL  160 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~------~g~~~i~ei~~~~ge~----~fr~-~e~~vl~~l  160 (278)
                      .++.|+|+|+|||||||+|+.|++.+|++++++|+++++.      .| ..+.+++.. |+.    .+.. ++..+....
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g-~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~   81 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENG-KRAKEFMEK-GQLVPDEIVVNMVKERLRQPD   81 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHH-HHHHHHHHT-TCCCCHHHHHHHHHHHHHSHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchh-HHHHHHHHc-CCcCCHHHHHHHHHHHHhhcc
Confidence            4678999999999999999999999999999999988762      22 233444432 221    1222 222222222


Q ss_pred             HcCCCEEEEeCCceeechhHHHhhh-----CCcEEEEEcCHHHHHhh-hcCC------C----------------C----
Q 023749          161 SSMGRLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHSG------F----------------P----  208 (278)
Q Consensus       161 ~~~~~~VI~~g~g~v~~~~~~~~L~-----~~~vV~L~a~~e~l~~R-~~r~------r----------------p----  208 (278)
                      ...+.+|+ .|  +.....+...+.     .+++|||++|++++.+| ..|.      +                +    
T Consensus        82 ~~~~~~vi-dg--~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r  158 (222)
T 1zak_A           82 AQENGWLL-DG--YPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQR  158 (222)
T ss_dssp             HHHTCEEE-ES--CCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCC
T ss_pred             ccCCcEEE-EC--CCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccC
Confidence            22345666 44  333333333343     37899999999999999 3221      1                0    


Q ss_pred             CCC----hHHHHHHHHHHhhh---ccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          209 ESE----VLPQLFALYKEMRD---GYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       209 ~~~----~~~~l~~~~~er~~---~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                      ..+    +...+...+.++.+   .|....++||            + +.++++++++|.+.+...+
T Consensus       159 ~~d~~~~i~~Rl~~~~~~~~~l~~~y~~~~~~Id------------~-~~~~~ev~~~I~~~l~~~l  212 (222)
T 1zak_A          159 FDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQ------------G-DATVDAVFAKIDELLGSIL  212 (222)
T ss_dssp             TTCCTTHHHHHHHHHHHHHHHHHHTTCCCEEEEE------------C-SSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcEEEEE------------C-CCCHHHHHHHHHHHHHhhc
Confidence            011    22233355565555   4444456666            3 6899999999999987654

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.66  E-value=5.2e-17  Score=138.86  Aligned_cols=160  Identities=13%  Similarity=0.118  Sum_probs=97.3

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC--CCChHHHHHhhchhHhH---HHHHH-------------
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKGYQ---QAETE-------------  155 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g--~~~i~ei~~~~ge~~fr---~~e~~-------------  155 (278)
                      ++|+|+|++||||||+++.|++ +|++++++|++.++.+.  ...+.+++...|+..|+   ..+..             
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   80 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL   80 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence            4799999999999999999999 99999999999876542  12233444444433221   00000             


Q ss_pred             --------------HHHHHHc-CC-CEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHH
Q 023749          156 --------------VLKQLSS-MG-RLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPESEVLPQLFA  218 (278)
Q Consensus       156 --------------vl~~l~~-~~-~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~  218 (278)
                                    +...+.. .+ ..||..+.  .+.+.++..+ .+.+|||++|++++.+| ..|++.    .+.+.+
T Consensus        81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~--~l~~~~~~~~-~~~~i~l~~~~e~~~~Rl~~R~~~----~~~~~~  153 (204)
T 2if2_A           81 RKLEEITHRALYKEIEKITKNLSEDTLFILEAS--LLVEKGTYKN-YDKLIVVYAPYEVCKERAIKRGMS----EEDFER  153 (204)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECS--CSTTTTCGGG-SSEEEEECCCHHHHHHHHHHTCCC----HHHHHH
T ss_pred             HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEcc--ccccCCchhh-CCEEEEEECCHHHHHHHHHHcCCC----HHHHHH
Confidence                          0011111 11 34444432  2222222111 67899999999999999 555432    233444


Q ss_pred             HHHHhhh---ccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCCCCccc
Q 023749          219 LYKEMRD---GYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASISDPTSR  274 (278)
Q Consensus       219 ~~~er~~---~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~~~~~~  274 (278)
                      .+..+.+   .+..||++||+            + .++++++++|.+++.+...||.-|
T Consensus       154 ~~~~~~~~~~~~~~ad~vId~------------~-~~~~~~~~~i~~~l~~~~~~~~~~  199 (204)
T 2if2_A          154 RWKKQMPIEEKVKYADYVIDN------------S-GSIEETYKQVKKVYEELTRDPLEH  199 (204)
T ss_dssp             HHTTSCCHHHHGGGCSEECCC------------S-SCHHHHHHHHHHHHHTTCC-----
T ss_pred             HHHhCCChhHHHhcCCEEEEC------------C-CCHHHHHHHHHHHHHHHhcChhhh
Confidence            4433332   22358988873            3 699999999999999999999765

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.64  E-value=2.2e-15  Score=126.60  Aligned_cols=160  Identities=17%  Similarity=0.154  Sum_probs=94.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHh---CCceecCchHHHHHhCCCChHHHHHhhchh------HhHHHHH-----HHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFEAAGGESAAKAFRESDEK------GYQQAET-----EVLKQ  159 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD~D~li~~~~g~~~i~ei~~~~ge~------~fr~~e~-----~vl~~  159 (278)
                      +.|+|+|++||||||+|+.|++.+   |++++++|.......| ..+.+++.. |+.      .|...+.     .++..
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~-~~i~~~~~~-g~~~~~~~~~~~~~~~~~~l~~~i~~   78 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVG-EVLREILLT-EELDERTELLLFEASRSKLIEEKIIP   78 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHH-HHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchH-HHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999998   9999998742211111 112233321 210      1111111     11222


Q ss_pred             HHcCCCEEEEe----------CCceeechhHHH----hh----hCCcEEEEEcCHHHHHhh-hcCCCCC-CChHHHHHHH
Q 023749          160 LSSMGRLVVCA----------GNGAVQSSANLA----LL----RHGISLWIDVPPGMVARM-DHSGFPE-SEVLPQLFAL  219 (278)
Q Consensus       160 l~~~~~~VI~~----------g~g~v~~~~~~~----~L----~~~~vV~L~a~~e~l~~R-~~r~rp~-~~~~~~l~~~  219 (278)
                      ....+..|+..          |.+.......+.    .+    ..+++|||++|++++.+| .+|++.. .+..+.+...
T Consensus        79 ~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~  158 (195)
T 2pbr_A           79 DLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRFENKEFLEKVRKG  158 (195)
T ss_dssp             HHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred             HHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCccchHHHHHHHHHH
Confidence            23345566665          322222222211    12    257899999999999999 5555432 1122333344


Q ss_pred             HHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749          220 YKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS  269 (278)
Q Consensus       220 ~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~  269 (278)
                      |.++...| .+.++||+             +.++++++++|.+.+.+.++
T Consensus       159 ~~~~~~~~-~~~~~Id~-------------~~~~~~~~~~i~~~l~~~l~  194 (195)
T 2pbr_A          159 FLELAKEE-ENVVVIDA-------------SGEEEEVFKEILRALSGVLR  194 (195)
T ss_dssp             HHHHHHHS-TTEEEEET-------------TSCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhhC-CCEEEEEC-------------CCCHHHHHHHHHHHHHHHhC
Confidence            55443333 24478873             57999999999999987765

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.64  E-value=4.7e-15  Score=124.28  Aligned_cols=158  Identities=12%  Similarity=0.084  Sum_probs=93.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHHHHHh---CCC--ChHHHHHhhchhHhHHHHHHH---HH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAA---GGE--SAAKAFRESDEKGYQQAETEV---LK  158 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li~~~~---g~~--~i~ei~~~~ge~~fr~~e~~v---l~  158 (278)
                      +++.|+|+|+|||||||+|+.|++.+|     +++++.|+++++..   | .  +..+++. .....++..+..+   +.
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~i~   79 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEEN-LVSDRDQMRK-MDPETQKRIQKMAGRKIA   79 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTT-SCSSGGGGSS-CCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccC-CCCCHHHHhc-CCHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999     99999988766542   2 1  2222211 1112223333222   33


Q ss_pred             HHHcCCCEEEEeCCceeechhHH------Hhh---hCCcEEEEEcCHHHHHh-h-hc--CCCCCCChH-----HHHHHHH
Q 023749          159 QLSSMGRLVVCAGNGAVQSSANL------ALL---RHGISLWIDVPPGMVAR-M-DH--SGFPESEVL-----PQLFALY  220 (278)
Q Consensus       159 ~l~~~~~~VI~~g~g~v~~~~~~------~~L---~~~~vV~L~a~~e~l~~-R-~~--r~rp~~~~~-----~~l~~~~  220 (278)
                      .+...+. ||.+|.+.......+      ..+   ..+++|||++|++++.+ | ..  |+++.....     ..+...+
T Consensus        80 ~~~~~~~-viid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~~~~~~~~~~~  158 (192)
T 1kht_A           80 EMAKESP-VAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCA  158 (192)
T ss_dssp             HHHTTSC-EEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHHH
T ss_pred             hhccCCe-EEEccceeccccccccccCcHHHHhccCCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHHHHHHHHHHHH
Confidence            3333444 444565543322211      222   25789999999999996 7 54  776643321     1233334


Q ss_pred             HHhhhccccCc-EEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749          221 KEMRDGYATAD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       221 ~er~~~Y~~AD-~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i  264 (278)
                      .++...|..+. .+|++            ...++++++++|.+.+
T Consensus       159 ~~~~~~~~~~~~~~i~~------------~~~~~e~~~~~i~~~i  191 (192)
T 1kht_A          159 AMSYGVLTGATVKIVQN------------RNGLLDQAVEELTNVL  191 (192)
T ss_dssp             HHHHHHHHCCEEEEEEC------------CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcEEEEeC------------CCCCHHHHHHHHHHHh
Confidence            44444443333 34442            3356999999998876

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.64  E-value=2.7e-15  Score=126.32  Aligned_cols=154  Identities=12%  Similarity=0.044  Sum_probs=88.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHH-------HHHHHHHcCC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET-------EVLKQLSSMG  164 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~-------~vl~~l~~~~  164 (278)
                      +++.|+|+|+|||||||+|+.|++.+|+++++.|.+.+...+ .     +...+..+++..+.       ..+......+
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g   77 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFD-G-----LGWSDREWSRRVGATAIMMLYHTAATILQSG   77 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHH-H-----HCCCSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHH-h-----cCccchHHHHHhhHHHHHHHHHHHHHHHhCC
Confidence            578999999999999999999999999999999998766543 0     01111122222211       1122222233


Q ss_pred             CEEEEeCCceeechh---HHHhhh-----CCcEEEEEcCHHHHHhh-hcC----CCCCC----ChHH--HHHHHHHHhhh
Q 023749          165 RLVVCAGNGAVQSSA---NLALLR-----HGISLWIDVPPGMVARM-DHS----GFPES----EVLP--QLFALYKEMRD  225 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~---~~~~L~-----~~~vV~L~a~~e~l~~R-~~r----~rp~~----~~~~--~l~~~~~er~~  225 (278)
                      ..||..+..  ....   .+..+.     ..++|||++|++++.+| ..|    .||..    +...  .+...++.+.+
T Consensus        78 ~~vi~d~~~--~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~  155 (193)
T 2rhm_A           78 QSLIMESNF--RVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPP  155 (193)
T ss_dssp             CCEEEEECC--CHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHHHHHSCCCCC
T ss_pred             CeEEEecCC--CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhhHHHHhcCCC
Confidence            334433322  1111   121133     13789999999999999 333    24411    2222  24445555555


Q ss_pred             ccc-cCcEEEecCcccccccccCCCCC---CHHHHHHHHHHHhh
Q 023749          226 GYA-TADVTVSLQKVASQLGYDDLDAV---TTEDMTLEVKWLYN  265 (278)
Q Consensus       226 ~Y~-~AD~vId~~~va~~~~~~Dts~~---tpeeva~~I~~~i~  265 (278)
                      +|. .++++||+            ++.   ..+++++.|.+.+.
T Consensus       156 ~~~~~~~~~Idt------------~~~~~~~~~~i~~~i~~~l~  187 (193)
T 2rhm_A          156 LPLGGPLLTVDT------------TFPEQIDMNAIVQWVRQHLQ  187 (193)
T ss_dssp             CCCCSCEEEEEC------------SSGGGCCHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEeC------------CCCcccCHHHHHHHHHHHHH
Confidence            665 57888884            443   55677777666654

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.63  E-value=1.4e-15  Score=132.69  Aligned_cols=110  Identities=10%  Similarity=0.065  Sum_probs=71.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh-CC----CChHHHHHhhchhHhHHHHHHHH-HHHHc--C
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GG----ESAAKAFRESDEKGYQQAETEVL-KQLSS--M  163 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~-g~----~~i~ei~~~~ge~~fr~~e~~vl-~~l~~--~  163 (278)
                      +++.|+|+|++||||||+|+.|++.+|++++++|++++... ++    ..+.+++.. |+..+++.....+ ..+..  .
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~~~   84 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQ-GKLIPDDVMTRLALHELKNLTQ   84 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHTCTT
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHhcccC
Confidence            46789999999999999999999999999999999887643 11    223344432 4434444433333 34432  3


Q ss_pred             CCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh
Q 023749          164 GRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM  202 (278)
Q Consensus       164 ~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R  202 (278)
                      ..+|++...+.+.....+..+. .+++|||++|++++.+|
T Consensus        85 ~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R  124 (227)
T 1zd8_A           85 YSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQR  124 (227)
T ss_dssp             SCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHH
T ss_pred             CCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHH
Confidence            4455543332221122233223 67999999999999999

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.63  E-value=2.7e-15  Score=130.03  Aligned_cols=107  Identities=12%  Similarity=0.135  Sum_probs=69.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH-hCC----CChHHHHHhhchhHhHHHHHHHHHHHHc----
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGG----ESAAKAFRESDEKGYQQAETEVLKQLSS----  162 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~-~g~----~~i~ei~~~~ge~~fr~~e~~vl~~l~~----  162 (278)
                      .++.|+|+|+|||||||+|+.|++.+|++++++|+++++. .++    ..+.+++. .|+..+++....++.....    
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~l~~~l~~~~~   81 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMD-QGGLVSDDIMVNMIKDELTNNPA   81 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHCGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHHhccc
Confidence            4789999999999999999999999999999999998764 221    22334443 2433444444444444332    


Q ss_pred             -CCCEEEEeCCceeechhHHH----hhh-----CCcEEEEEcCHHHHHhh
Q 023749          163 -MGRLVVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM  202 (278)
Q Consensus       163 -~~~~VI~~g~g~v~~~~~~~----~L~-----~~~vV~L~a~~e~l~~R  202 (278)
                       ...+|+ .|  +.....+..    .+.     .+++|||++|++++.+|
T Consensus        82 ~~~~~i~-dg--~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R  128 (220)
T 1aky_A           82 CKNGFIL-DG--FPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVAR  128 (220)
T ss_dssp             GGSCEEE-ES--CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHH
T ss_pred             cCCCeEE-eC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence             233344 33  221111111    221     35899999999999999

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.62  E-value=1.3e-15  Score=135.86  Aligned_cols=39  Identities=26%  Similarity=0.249  Sum_probs=36.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE  130 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~  130 (278)
                      ++..|.|+|++||||||+++.|+++||+.++|+|.+++.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~   64 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV   64 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence            478999999999999999999999999999999998844

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.61  E-value=5.9e-15  Score=127.29  Aligned_cols=147  Identities=12%  Similarity=0.084  Sum_probs=94.0

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHh---------------HHHHH-HH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGY---------------QQAET-EV  156 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~f---------------r~~e~-~v  156 (278)
                      -++|.|+|++||||||+|+.|++.+|++++|+|.+.++.++ ..+.+++..+|+..|               .+.+. ..
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~-~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~~~   90 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLE-EVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENLKK   90 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH-HTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHH-HHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHHHH
Confidence            35799999999999999999999999999999999888775 345556666665433               11110 11


Q ss_pred             HH-------------HHHcCCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHh
Q 023749          157 LK-------------QLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEM  223 (278)
Q Consensus       157 l~-------------~l~~~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er  223 (278)
                      ++             .+......|+..+  ..+.+.++.. ..+.+|||++|++++.+|-        ...++..++   
T Consensus        91 l~~i~hP~i~~~~~~~~~~~~~~vv~d~--pll~e~~~~~-~~d~vi~v~a~~e~r~~Rl--------i~~q~~~~~---  156 (192)
T 2grj_A           91 LELLVHPLMKKRVQEIINKTSGLIVIEA--ALLKRMGLDQ-LCDHVITVVASRETILKRN--------READRRLKF---  156 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCEEEEEEC--TTTTTTTGGG-GCSEEEEEECCHHHHHHHC--------SSHHHHHTT---
T ss_pred             HHhhhCHHHHHHHHHHHHHcCCEEEEEE--eceeecChHH-hCCEEEEEECCHHHHHHHH--------HHhcCCchh---
Confidence            11             1212233344332  1222222211 1678999999999999983        011221111   


Q ss_pred             hhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          224 RDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       224 ~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                      .+.++.||++|+|             +.+++++.++|.+++...
T Consensus       157 ~~~~~~AD~vI~n-------------~~~~~~l~~~v~~~~~~l  187 (192)
T 2grj_A          157 QEDIVPQGIVVAN-------------NSTLEDLEKKVEEVMKLV  187 (192)
T ss_dssp             CTTCCCCSEEEEC-------------SSCHHHHHHHHHHHHHHH
T ss_pred             hhHHhcCCEEEEC-------------CCCHHHHHHHHHHHHHHH
Confidence            2223479999995             369999999998887643

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.60  E-value=1.1e-14  Score=127.76  Aligned_cols=110  Identities=13%  Similarity=0.136  Sum_probs=70.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh------CCCChHHHHHhhchhHhHHHHHHHHHHHHcCC-
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA------GGESAAKAFRESDEKGYQQAETEVLKQLSSMG-  164 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~------g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~-  164 (278)
                      .++.|+|+|++||||||+|+.||+++|++++++|+++++..      | ..+.+++. .|+..+.+....++....... 
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g-~~i~~~~~-~g~~~~~~~~~~~i~~~l~~~~   92 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELG-KKLKATMD-AGKLVSDEMVLELIEKNLETPP   92 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHH-HHHHHHHH-TTCCCCHHHHHHHHHHHHTSGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhH-HHHHHHHH-CCCcCCHHHHHHHHHHHHhccc
Confidence            46789999999999999999999999999999999887632      2 22334443 233344555445554433221 


Q ss_pred             --CEEEEeCCceeechhHHH----hhh-----CCcEEEEEcCHHHHHhh-hcC
Q 023749          165 --RLVVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM-DHS  205 (278)
Q Consensus       165 --~~VI~~g~g~v~~~~~~~----~L~-----~~~vV~L~a~~e~l~~R-~~r  205 (278)
                        ..+|..|  +.......+    .+.     .+++|||++|++++.+| ..|
T Consensus        93 ~~~g~ildg--~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R  143 (233)
T 1ak2_A           93 CKNGFLLDG--FPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGR  143 (233)
T ss_dssp             GTTCEEEES--CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTC
T ss_pred             ccCcEEEeC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence              1233333  111111111    221     57899999999999999 443

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.60  E-value=8.4e-15  Score=125.38  Aligned_cols=151  Identities=16%  Similarity=0.114  Sum_probs=91.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC--CCChHHHHHhhchhHhHH--------------------
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKGYQQ--------------------  151 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g--~~~i~ei~~~~ge~~fr~--------------------  151 (278)
                      ..|.|+|++||||||+++.|++ +|++++|+|.+.++...  ...+.+++...|+..|+.                    
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   81 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK   81 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence            4799999999999999999998 99999999998766432  122344444444433221                    


Q ss_pred             --HHH--------HHHHHHHc-CCCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcC-CCCCCChHHHHH
Q 023749          152 --AET--------EVLKQLSS-MGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPESEVLPQLF  217 (278)
Q Consensus       152 --~e~--------~vl~~l~~-~~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~l~  217 (278)
                        .+.        .+...+.. .+..||..+.  .+.+..  ..+ .+.+|||++|++++.+| ..| +++    .+.+.
T Consensus        82 ~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~--~l~e~~--~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~----~e~~~  153 (206)
T 1jjv_A           82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVVP--LLIENK--LTALCDRILVVDVSPQTQLARSAQRDNNN----FEQIQ  153 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSSEEEEECT--TTTTTT--CGGGCSEEEEEECCHHHHHHHHC-----C----HHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHhcCCCEEEEEec--hhhhcC--cHhhCCEEEEEECCHHHHHHHHHHcCCCC----HHHHH
Confidence              000        00011111 1223443221  111221  223 67899999999999999 444 332    23444


Q ss_pred             HHHH---HhhhccccCcEEEecCcccccccccCCCCCCHH----HHHHHHHHHhhh
Q 023749          218 ALYK---EMRDGYATADVTVSLQKVASQLGYDDLDAVTTE----DMTLEVKWLYNA  266 (278)
Q Consensus       218 ~~~~---er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpe----eva~~I~~~i~~  266 (278)
                      +.+.   .+.+.|+.||++|++            ++ +++    +++++|.+++..
T Consensus       154 ~r~~~q~~~~~~~~~ad~vIdn------------~~-~~~~~~~~~~~~i~~~~~~  196 (206)
T 1jjv_A          154 RIMNSQVSQQERLKWADDVINN------------DA-ELAQNLPHLQQKVLELHQF  196 (206)
T ss_dssp             HHHHHSCCHHHHHHHCSEEEEC------------CS-CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCChHHHHHhCCEEEEC------------CC-CccccHHHHHHHHHHHHHH
Confidence            4444   244556679999984            45 999    999999888764

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.59  E-value=1.5e-14  Score=123.43  Aligned_cols=161  Identities=12%  Similarity=0.141  Sum_probs=94.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh--CCCChH----HHHHhhchhHhHHHHHHHHH----H-H
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--GGESAA----KAFRESDEKGYQQAETEVLK----Q-L  160 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~--g~~~i~----ei~~~~ge~~fr~~e~~vl~----~-l  160 (278)
                      .++.|+|+|++||||||+|+.|++.+|++++|+|+++++..  ++..+.    +++. .|+..+.+.....+.    . +
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~i~~~l   92 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIK-EGQIVPQEITLALLRNAISDNV   92 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHhhh
Confidence            45689999999999999999999999999999999887652  223322    2332 233333333222222    2 2


Q ss_pred             HcCCCEEEEeCCceeec-hhHHH-hhh-CCcEEEEEcCHHHHHhh-hcC----CCCCCChHHHHHH----HHHHhhhc--
Q 023749          161 SSMGRLVVCAGNGAVQS-SANLA-LLR-HGISLWIDVPPGMVARM-DHS----GFPESEVLPQLFA----LYKEMRDG--  226 (278)
Q Consensus       161 ~~~~~~VI~~g~g~v~~-~~~~~-~L~-~~~vV~L~a~~e~l~~R-~~r----~rp~~~~~~~l~~----~~~er~~~--  226 (278)
                      ......++..|...-.. ...++ .+. .+++|||++|++++.+| ..|    ++... ..+.+.+    .++.+.+.  
T Consensus        93 ~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~-~~e~~~~r~~~~~~~~~~~~~  171 (203)
T 1ukz_A           93 KANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDD-NIESIKKRFNTFKETSMPVIE  171 (203)
T ss_dssp             HTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTC-SHHHHHHHHHHHHHTTHHHHH
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCCCC-CHHHHHHHHHHHHHhhHHHHH
Confidence            22223344333211011 11111 122 57899999999999999 333    34322 2333322    23333333  


Q ss_pred             -cccCcEE--EecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          227 -YATADVT--VSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       227 -Y~~AD~v--Id~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                       |+.++.+  ||            + +.++++++++|.+.+.+.
T Consensus       172 ~~~~~~~vi~id------------~-~~~~e~v~~~i~~~l~~~  202 (203)
T 1ukz_A          172 YFETKSKVVRVR------------C-DRSVEDVYKDVQDAIRDS  202 (203)
T ss_dssp             HHHTTTCEEEEE------------C-SSCHHHHHHHHHHHHHHH
T ss_pred             HHHhcCcEEEEE------------C-CCCHHHHHHHHHHHHhcc
Confidence             3456654  45            2 489999999999998754

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.59  E-value=8.3e-16  Score=135.19  Aligned_cols=156  Identities=13%  Similarity=0.159  Sum_probs=95.8

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH------hCCCCh------HHHHH----------------
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESA------AKAFR----------------  142 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~------~g~~~i------~ei~~----------------  142 (278)
                      ..+.+|.|+|++||||||+++.|++.||++++|+|.+.+..      .| .+.      .+...                
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i   92 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQ-LGVEEVEALLALLDQHPISFGRSETGDQLV   92 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTT-CCTTCHHHHHHHHHHSCCEEEEETTTEEEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccC-CCcccHHHHHHHHHhccccccccCCccceE
Confidence            46789999999999999999999999999999999988653      23 221      11110                


Q ss_pred             -hhchhHhHHHH---------------------HHHHHHHHcCCCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHH
Q 023749          143 -ESDEKGYQQAE---------------------TEVLKQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMV  199 (278)
Q Consensus       143 -~~ge~~fr~~e---------------------~~vl~~l~~~~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l  199 (278)
                       ..|+..++.++                     ......++..+.+|+ .|...     ....++ .+++|||++|++++
T Consensus        93 ~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~-~g~~~-----~~~~l~~~d~vi~L~a~~e~~  166 (236)
T 1q3t_A           93 FVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVM-DGRDI-----GTVVLPQAELKIFLVASVDER  166 (236)
T ss_dssp             EETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEE-ECSSC-----SSSSGGGCSEEEEEECCHHHH
T ss_pred             eECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEE-ECCcc-----hhhhccCCCEEEEEECCHHHH
Confidence             11221111000                     001112233333444 23211     001233 67899999999999


Q ss_pred             Hhh-h----cCCCCCCChHHHHHHHHHHhh---------hccccCc-EEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749          200 ARM-D----HSGFPESEVLPQLFALYKEMR---------DGYATAD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       200 ~~R-~----~r~rp~~~~~~~l~~~~~er~---------~~Y~~AD-~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i  264 (278)
                      .+| .    .|++..  ..+.+.+.+.+|+         ++|..+| ++||            ++++++++++++|.+++
T Consensus       167 ~~R~~~~~~~R~~~~--~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId------------~~~~s~eev~~~I~~~l  232 (236)
T 1q3t_A          167 AERRYKENIAKGIET--DLETLKKEIAARDYKDSHRETSPLKQAEDAVYLD------------TTGLNIQEVVEKIKAEA  232 (236)
T ss_dssp             HHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEE------------CSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCC--CHHHHHHHHHHHhhhhhhcccccccccCCEEEEc------------CCCCCHHHHHHHHHHHH
Confidence            988 2    344321  2344555555542         4555555 8888            56789999999999998


Q ss_pred             hhc
Q 023749          265 NAS  267 (278)
Q Consensus       265 ~~~  267 (278)
                      ...
T Consensus       233 ~~~  235 (236)
T 1q3t_A          233 EKR  235 (236)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            754

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.59  E-value=2.9e-14  Score=121.26  Aligned_cols=148  Identities=16%  Similarity=0.125  Sum_probs=94.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh------CCCC------hHHHHHh----------------hc
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA------GGES------AAKAFRE----------------SD  145 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~------g~~~------i~ei~~~----------------~g  145 (278)
                      +.|.|+|++||||||+|+.|++.+|++++|.|.+.+...      | .+      +.++...                .|
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   81 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAG-VDPGDEEGLLALLEGLGVRLLAQAEGNRVLADG   81 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHT-CCTTCHHHHHHHHHHTTCEEECCTTCCEEEETT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcC-CCCCCHHHHHHHHHhCceeeeecCCCceEEECC
Confidence            489999999999999999999999999999999886542      3 21      1111111                12


Q ss_pred             hhHhHHHHH------------------HHHH---HHHcCCCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-
Q 023749          146 EKGYQQAET------------------EVLK---QLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-  202 (278)
Q Consensus       146 e~~fr~~e~------------------~vl~---~l~~~~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-  202 (278)
                      +..|+..+.                  .+..   ++.  +.+|+. |..  ..   ...++ .+++|||++|++++.+| 
T Consensus        82 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~-g~~--~~---~~~~~~~d~~i~l~a~~e~~~~R~  153 (208)
T 3ake_A           82 EDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAE-GRD--MG---TAVFPEAAHKFYLTASPEVRAWRR  153 (208)
T ss_dssp             EECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEE-ESS--CC---CCCCTTCSEEEEEECCHHHHHHHH
T ss_pred             eeCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEE-ccc--ee---EEEecCCcEEEEEECCHHHHHHHH
Confidence            222221111                  1111   111  334432 221  11   01123 57899999999999999 


Q ss_pred             hcCCCCCCChHHHHHHHHHHhhhcc----c-cCc-EEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749          203 DHSGFPESEVLPQLFALYKEMRDGY----A-TAD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN  265 (278)
Q Consensus       203 ~~r~rp~~~~~~~l~~~~~er~~~Y----~-~AD-~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~  265 (278)
                      ..|..  .+ .+.+.+.+.+|.+.|    . .+| ++||            ++++++++++++|.+++.
T Consensus       154 ~~r~~--~~-~~~~~~~~~~R~~~~~~~~~~~ad~~~Id------------~~~~~~ee~~~~I~~~~~  207 (208)
T 3ake_A          154 ARERP--QA-YEEVLRDLLRRDERDKAQSAPAPDALVLD------------TGGMTLDEVVAWVLAHIR  207 (208)
T ss_dssp             HHTSS--SC-HHHHHHHHHHHHHTC--CCCCCTTCEEEE------------TTTSCHHHHHHHHHHHHH
T ss_pred             Hhhcc--cC-HHHHHHHHHHHHHHHhhcccCCCCEEEEE------------CCCCCHHHHHHHHHHHHh
Confidence            44432  22 356777777777766    4 477 8888            567899999999998875

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.59  E-value=4.8e-15  Score=129.94  Aligned_cols=157  Identities=17%  Similarity=0.142  Sum_probs=101.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh--CCCChHHHHHhhchhHhH----------------HH-HH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--GGESAAKAFRESDEKGYQ----------------QA-ET  154 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~--g~~~i~ei~~~~ge~~fr----------------~~-e~  154 (278)
                      -.|.|+|.+||||||+++.|++ +|++++|+|.+.++.+  |+..+.+++..+|+..|.                +- ..
T Consensus        10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~   88 (210)
T 4i1u_A           10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR   88 (210)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence            3689999999999999999988 9999999999988866  234566777777765542                00 00


Q ss_pred             HHHH-------------HHHc-CCCEEEEeCCceeech-hHHHhhhCCcEEEEEcCHHHHHhh-hcC-CCCCCChHHHHH
Q 023749          155 EVLK-------------QLSS-MGRLVVCAGNGAVQSS-ANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQLF  217 (278)
Q Consensus       155 ~vl~-------------~l~~-~~~~VI~~g~g~v~~~-~~~~~L~~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~l~  217 (278)
                      +.|+             .+.. ....|+...  .++.+ .++.. ..+.+||+++|++++.+| ..| +...++..+.+.
T Consensus        89 ~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~--pLL~E~~~~~~-~~D~vi~V~ap~e~r~~Rl~~Rdg~s~eea~~ri~  165 (210)
T 4i1u_A           89 RRLEAITHPLIRAETEREARDAQGPYVIFVV--PLLVESRNWKA-RCDRVLVVDCPVDTQIARVMQRNGFTREQVEAIIA  165 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC--TTCTTCHHHHH-HCSEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE--ecccccCCccc-cCCeEEEEECCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            1111             1111 122333221  13344 44432 168999999999999999 433 554433444444


Q ss_pred             HHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          218 ALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       218 ~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                      .++.. ...++.||++|+|            ++.+++++..+|.+++...
T Consensus       166 ~Q~~~-eek~~~AD~VIdN------------~~gsle~l~~qV~~l~~~~  202 (210)
T 4i1u_A          166 RQATR-EARLAAADDVIVN------------DAATPDALAVQVDALHQRY  202 (210)
T ss_dssp             HSCCH-HHHHHTCSEEEEC------------SSCCHHHHHHHHHHHHHHH
T ss_pred             HcCCh-HHHHHhCCEEEEC------------CCCCHHHHHHHHHHHHHHH
Confidence            44322 2233479999995            2159999999998887653

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.57  E-value=1.8e-15  Score=128.30  Aligned_cols=156  Identities=15%  Similarity=0.090  Sum_probs=93.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh-CCCChHHHHHhhchhHhH--------------------
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGESAAKAFRESDEKGYQ--------------------  150 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~-g~~~i~ei~~~~ge~~fr--------------------  150 (278)
                      +++.|+|+|++||||||+|+.|++. |++++|+|.+.++.. | .. .+++..+ +..|+                    
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~-~~-~~i~~~~-~~~~~~g~i~~~~l~~~~~~~~~~~   82 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAREN-KE-EELKRLF-PEAVVGGRLDRRALARLVFSDPERL   82 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHH-TH-HHHHHHC-GGGEETTEECHHHHHHHHTTSHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCC-hH-HHHHHHH-HHHHhCCCcCHHHHHHHHhCCHHHH
Confidence            4678999999999999999999997 999999999887655 4 22 2232222 11110                    


Q ss_pred             -HHHH--------HHHHHHHcC-CCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcCC-CCCCChHHHHHH
Q 023749          151 -QAET--------EVLKQLSSM-GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSG-FPESEVLPQLFA  218 (278)
Q Consensus       151 -~~e~--------~vl~~l~~~-~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r~-rp~~~~~~~l~~  218 (278)
                       .++.        ..+...... +.+||..+.  .+.+.++.. ..+.+|||++|++++.+| ..|+ ...    +.+..
T Consensus        83 ~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~--~l~~~~~~~-~~d~~i~l~~~~e~~~~R~~~R~~~~~----~~~~~  155 (203)
T 1uf9_A           83 KALEAVVHPEVRRLLMEELSRLEAPLVFLEIP--LLFEKGWEG-RLHGTLLVAAPLEERVRRVMARSGLSR----EEVLA  155 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCSEEEEECT--TTTTTTCGG-GSSEEEEECCCHHHHHHHHHTTTCCTT----HHHHH
T ss_pred             HHHHHHhChHHHHHHHHHhhhcCCCEEEEEec--ceeccCchh-hCCEEEEEECCHHHHHHHHHHcCCCCH----HHHHH
Confidence             0110        111111122 455655432  222222211 157899999999999999 5442 222    22333


Q ss_pred             HHHHhhhcc---ccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCCCC
Q 023749          219 LYKEMRDGY---ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASISDP  271 (278)
Q Consensus       219 ~~~er~~~Y---~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~~~  271 (278)
                      .+.++.+.+   ..+|++||+            ++ ++++++++|.+++....+.|
T Consensus       156 ~i~~~~~~~~~~~~ad~vId~------------~~-~~~~~~~~i~~~~~~~~~~~  198 (203)
T 1uf9_A          156 RERAQMPEEEKRKRATWVLEN------------TG-SLEDLERALKAVLAELTGGA  198 (203)
T ss_dssp             HHTTSCCHHHHHHHCSEEECC------------SS-HHHHHHHHHHHHHHSCCC--
T ss_pred             HHHHCCChhHHHHhCCEEEEC------------CC-CHHHHHHHHHHHHHHHHhhh
Confidence            333333222   358998883            44 99999999999998766544

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.57  E-value=2e-14  Score=121.68  Aligned_cols=157  Identities=14%  Similarity=0.091  Sum_probs=88.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCc----hHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEE
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSD----SLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC  169 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D----~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~  169 (278)
                      +.|+|+|++||||||+++.|++.+|+++++..    .+++..+.  .... ....-...|...+.+.+......+. +|.
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~-vi~   76 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYK--DLKK-TVFKMQIYMLTARSKQLKQAKNLEN-IIF   76 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTT--CHHH-HHHHHHHHHHHHHHHHHC------C-EEE
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHh--Cccc-cchhHHHHHHHHHHHHHHHhhccCC-EEE
Confidence            47999999999999999999999999887531    11222111  0000 0000000111111111212222233 443


Q ss_pred             eCC--------------ceeechh----------HHHhh-------h-CCcEEEEEcCHHHHHhh-hcCCCCCC-----C
Q 023749          170 AGN--------------GAVQSSA----------NLALL-------R-HGISLWIDVPPGMVARM-DHSGFPES-----E  211 (278)
Q Consensus       170 ~g~--------------g~v~~~~----------~~~~L-------~-~~~vV~L~a~~e~l~~R-~~r~rp~~-----~  211 (278)
                      ...              |.+....          ....+       . .+++|||++|++++.+| ..|+++..     +
T Consensus        77 d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r~~~~~~~~~  156 (205)
T 2jaq_A           77 DRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGRSEELLIGEE  156 (205)
T ss_dssp             ESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTCHHHHHSCHH
T ss_pred             EeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCChhhhcCcHH
Confidence            321              1111111          00111       2 56899999999999999 55666532     2


Q ss_pred             hHHHHHHHHHHhhhcc--ccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          212 VLPQLFALYKEMRDGY--ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       212 ~~~~l~~~~~er~~~Y--~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                      ..+.+..+|.++.+.|  ..++++||+            ++ ++++++++|.+.+.+.
T Consensus       157 ~~~~l~~~~~~~~~~~~~~~~~~~Id~------------~~-~~~~v~~~I~~~l~~~  201 (205)
T 2jaq_A          157 YWETLNKNYEEFYKQNVYDFPFFVVDA------------EL-DVKTQIELIMNKLNSI  201 (205)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSCEEEEET------------TS-CHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHccccCcEEEEEC------------CC-CHHHHHHHHHHHHHHh
Confidence            3355667777776767  358899984            34 9999999999998653

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=99.57  E-value=7.8e-15  Score=145.17  Aligned_cols=160  Identities=13%  Similarity=0.184  Sum_probs=90.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC------CceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR------YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR  165 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg------~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~  165 (278)
                      +|..|+|+|++||||||+++.|+..++      +.++|.|.+.+...+  .+. +-...++..++.+ ..+...+...++
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~--~l~-f~~~~r~~~~r~i-~~v~q~l~~~~~  443 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSS--ELG-FSKAHRDVNVRRI-GFVASEITKNRG  443 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTS--SCC-CSHHHHHHHHHHH-HHHHHHHHHTTC
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhcc--ccC-CCHHHHHHHHHHH-HHHHHHHHhcCC
Confidence            688999999999999999999999984      557999888654322  111 1011223334433 334455555567


Q ss_pred             EEEEeCCc--eeechhHHHhhh-CC--cEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc--cCcEEEecCc
Q 023749          166 LVVCAGNG--AVQSSANLALLR-HG--ISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--TADVTVSLQK  238 (278)
Q Consensus       166 ~VI~~g~g--~v~~~~~~~~L~-~~--~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~--~AD~vId~~~  238 (278)
                      .++.++.+  ......+++.++ .+  ++|||++|.+++.+|.+++.........+..++..|.++|.  .+|++||   
T Consensus       444 ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~l~~~~~~~~i~~l~~~r~~~e~P~~adl~Id---  520 (552)
T 3cr8_A          444 IAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTGVSDPYEVPETPELAID---  520 (552)
T ss_dssp             EEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC-----------------------------CCCCCCSSCSEEEC---
T ss_pred             EEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhccccccccccHhHHHHHHhccccccCCCCCCEEEE---
Confidence            77766532  122234455565 56  79999999999999944443222223457778888888774  5899987   


Q ss_pred             ccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          239 VASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       239 va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                               |++.++++++++|++.+.+.
T Consensus       521 ---------t~~~s~~e~v~~Il~~L~~~  540 (552)
T 3cr8_A          521 ---------TTGLAIDEAVQQILLKLEHE  540 (552)
T ss_dssp             ---------CSSCCHHHHHHHHHHHHHHH
T ss_pred             ---------CCCCCHHHHHHHHHHHHHhc
Confidence                     67899999999999999653

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.56  E-value=1.9e-14  Score=124.37  Aligned_cols=154  Identities=14%  Similarity=0.104  Sum_probs=93.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh--CCCChHHHHHhhchhHhH-------------------
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--GGESAAKAFRESDEKGYQ-------------------  150 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~--g~~~i~ei~~~~ge~~fr-------------------  150 (278)
                      .++.|+|+|++||||||+++.|++ +|++++|+|.+.++..  +...+.+++...|+..+.                   
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~   81 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE   81 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence            357899999999999999999998 9999999999887653  212334444444432221                   


Q ss_pred             ---HHHHH---HH-----HHHHc-CCCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcC-CCCCCChHHH
Q 023749          151 ---QAETE---VL-----KQLSS-MGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPESEVLPQ  215 (278)
Q Consensus       151 ---~~e~~---vl-----~~l~~-~~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~  215 (278)
                         ..+..   .+     ..+.. ....++..+ .. +.+.++  .. .+.+|||++|++++.+| ..| +..    .+.
T Consensus        82 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~-~~-l~~~~~--~~~~d~vi~l~~~~e~~~~Rl~~R~~~~----~~~  153 (218)
T 1vht_A           82 EKNWLNALLHPLIQQETQHQIQQATSPYVLWVV-PL-LVENSL--YKKANRVLVVDVSPETQLKRTMQRDDVT----REH  153 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TT-TTTTTG--GGGCSEEEEEECCHHHHHHHHHHHHTCC----HHH
T ss_pred             HHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEe-ee-eeccCc--cccCCEEEEEECCHHHHHHHHHHcCCCC----HHH
Confidence               00100   00     01111 123344322 11 112222  23 67999999999999999 444 222    234


Q ss_pred             HHHHHHHhhhcc---ccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          216 LFALYKEMRDGY---ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       216 l~~~~~er~~~Y---~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                      +.+.+..+.+.|   ..||++||+            ++ ++++++++|.+++...
T Consensus       154 ~~~~~~~~~~~~~~~~~ad~vId~------------~~-~~~~~~~~I~~~l~~~  195 (218)
T 1vht_A          154 VEQILAAQATREARLAVADDVIDN------------NG-APDAIASDVARLHAHY  195 (218)
T ss_dssp             HHHHHHHSCCHHHHHHHCSEEEEC------------SS-CTTSHHHHHHHHHHHH
T ss_pred             HHHHHHhcCChHHHHHhCCEEEEC------------CC-CHHHHHHHHHHHHHHH
Confidence            555555444333   358999984            44 8888888888877643

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.55  E-value=1.1e-13  Score=115.90  Aligned_cols=157  Identities=7%  Similarity=0.016  Sum_probs=91.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHHHHHhCCCCh---HHHHHhhc----hhHhHHHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESA---AKAFRESD----EKGYQQAETEVLKQLS  161 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li~~~~g~~~i---~ei~~~~g----e~~fr~~e~~vl~~l~  161 (278)
                      +.|+|+|+|||||||+|+.|+++++     +.+++.|+++.+..+...+   .+-|....    ...+...... +....
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~l   80 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKG-IAEEA   80 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHH-HHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHH-HHHHh
Confidence            4799999999999999999999998     8889888877654310110   11111110    0111111111 22332


Q ss_pred             --cCCCEEEEeCCceeech---------hHHHhhhCCcEEEEEcCHHHHHhh--hc--CCC-CCCCh-----HHHHHHHH
Q 023749          162 --SMGRLVVCAGNGAVQSS---------ANLALLRHGISLWIDVPPGMVARM--DH--SGF-PESEV-----LPQLFALY  220 (278)
Q Consensus       162 --~~~~~VI~~g~g~v~~~---------~~~~~L~~~~vV~L~a~~e~l~~R--~~--r~r-p~~~~-----~~~l~~~~  220 (278)
                        ..+..||..+.+.+...         .....+..+.+|||++|++++.+|  ..  |++ +..+.     ...+...|
T Consensus        81 ~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~~~~~~~~~~~~~~~~  160 (194)
T 1nks_A           81 RAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYA  160 (194)
T ss_dssp             HHTCSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHHHHHH
T ss_pred             hccCCCEEEECCchhhccccccccCCCHHHHHhcCCCEEEEEeCCHHHHHHHHHhhcccCCCCccCHHHHHHHHHHHHHH
Confidence              34556676654332221         111222367899999999998855  45  766 42221     12244556


Q ss_pred             HHhhhccccCc-EEE-ecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749          221 KEMRDGYATAD-VTV-SLQKVASQLGYDDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       221 ~er~~~Y~~AD-~vI-d~~~va~~~~~~Dts~~tpeeva~~I~~~i  264 (278)
                      .++...|..++ ++| |             .+.++++++++|.+++
T Consensus       161 ~~~~~~~~~~~~~~I~d-------------~~~~~e~v~~~I~~~l  193 (194)
T 1nks_A          161 ATASAVLAGSTVKVIVN-------------VEGDPSIAANEIIRSM  193 (194)
T ss_dssp             HHHHHHHHTCEEEEEEC-------------CSSCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcEEEEeC-------------CCCCHHHHHHHHHHHh
Confidence            66555453333 566 4             3479999999999876

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.53  E-value=2.7e-14  Score=118.50  Aligned_cols=157  Identities=11%  Similarity=0.105  Sum_probs=80.0

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH-HhCCceecCchHHHHHhCCCChH--HHHHhhchhHhHHHHHHHHHHHH---cCCCE
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD-ALRYYYFDSDSLVFEAAGGESAA--KAFRESDEKGYQQAETEVLKQLS---SMGRL  166 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe-~Lg~~~iD~D~li~~~~g~~~i~--ei~~~~ge~~fr~~e~~vl~~l~---~~~~~  166 (278)
                      ++.|+|+|+|||||||+|+.|++ .+|+.++++|.+.+...+ .+..  ..+...++..+.+....++....   ..+..
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~   80 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA-HEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKG   80 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTT-SCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCE
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhC-CCccchhhhchhhhhHHHHHHHHHHHHHHhhccCCCe
Confidence            56899999999999999999999 689999999988776655 2111  01222234445444444555555   44445


Q ss_pred             EEEeCCceeechhHHHhh----h-CC---cEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccccCcEEEecC
Q 023749          167 VVCAGNGAVQSSANLALL----R-HG---ISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQ  237 (278)
Q Consensus       167 VI~~g~g~v~~~~~~~~L----~-~~---~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~~AD~vId~~  237 (278)
                      ||..+.  ......++.+    + .+   .+|||++|++++.+| ..|+... ...+.+.++++..........++||  
T Consensus        81 vi~d~~--~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~-~~~~~i~~~~~~~~~~~~~~~~~id--  155 (181)
T 1ly1_A           81 VIISDT--NLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKA-VPIDVLRSMYKSMREYLGLPVYNGT--  155 (181)
T ss_dssp             EEECSC--CCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGGC-CCHHHHHHHHHHHHHHHTCCCC-----
T ss_pred             EEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccCC-CCHHHHHHHHHHhhccCCCCccccC--
Confidence            554432  2222222222    2 22   689999999999999 5554211 1234555554443332222235555  


Q ss_pred             cccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          238 KVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       238 ~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                                ++ . |+++...|...+..+
T Consensus       156 ----------~~-~-~~~v~~~i~~~l~~~  173 (181)
T 1ly1_A          156 ----------PG-K-PKAVIFDVDGTLAKM  173 (181)
T ss_dssp             ------------------------------
T ss_pred             ----------CC-C-Cceeeehhhhhhhcc
Confidence                      22 2 477777777666553

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.53  E-value=1.6e-13  Score=118.06  Aligned_cols=108  Identities=13%  Similarity=0.116  Sum_probs=65.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCC-----ChHHHHHhhchhHhHHHHHHHHHHHHc----CC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-----SAAKAFRESDEKGYQQAETEVLKQLSS----MG  164 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~-----~i~ei~~~~ge~~fr~~e~~vl~~l~~----~~  164 (278)
                      ++|+|+|+|||||||+|+.|++++|++++++|+++++.....     .+.+.+.. |..........++.....    ..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~l~~~~~~~   79 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQ-GNLVPDEVTIGIVHERLSKDDCQK   79 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcccCCC
Confidence            479999999999999999999999999999999887743211     12222222 211122222223322221    23


Q ss_pred             CEEEEeCCceeechhHHH----hhh-----CCcEEEEEcCHHHHHhh-hcC
Q 023749          165 RLVVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM-DHS  205 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~~~~----~L~-----~~~vV~L~a~~e~l~~R-~~r  205 (278)
                      .+|+ .|  .........    .+.     .+.+|||++|++++.+| ..|
T Consensus        80 ~~il-dg--~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  127 (216)
T 3fb4_A           80 GFLL-DG--FPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR  127 (216)
T ss_dssp             CEEE-ES--CCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred             cEEE-eC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence            3444 33  222222211    121     45899999999999999 444

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.52  E-value=7.2e-14  Score=121.97  Aligned_cols=109  Identities=13%  Similarity=0.125  Sum_probs=67.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh-CCC----ChHHHHHhhchhHhHHHHHHHHHHHHcC--CCE
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGE----SAAKAFRESDEKGYQQAETEVLKQLSSM--GRL  166 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~-g~~----~i~ei~~~~ge~~fr~~e~~vl~~l~~~--~~~  166 (278)
                      +.|+|+|+|||||||+|+.|++.+|++++++|+++++.. ++.    .+.+++. .|+..+.+....++......  +..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~i~~~l~~~~g~~   79 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFID-RGDLVPDDITIPMVLETLESKGKDG   79 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHCTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHH-cCCcCcHHHHHHHHHHHHhcccCCe
Confidence            479999999999999999999999999999999988763 211    1223332 23323333333333332222  333


Q ss_pred             EEEeCCceeechhHHHhh---------hCCcEEEEEcCHHHHHhh-hcC
Q 023749          167 VVCAGNGAVQSSANLALL---------RHGISLWIDVPPGMVARM-DHS  205 (278)
Q Consensus       167 VI~~g~g~v~~~~~~~~L---------~~~~vV~L~a~~e~l~~R-~~r  205 (278)
                      ||..|.  .........+         ..+++|||++|++++.+| ..|
T Consensus        80 vIlDg~--~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  126 (223)
T 2xb4_A           80 WLLDGF--PRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGR  126 (223)
T ss_dssp             EEEESC--CCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTB
T ss_pred             EEEeCC--cCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcc
Confidence            444432  2211111111         146899999999999999 443

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.52  E-value=2.5e-13  Score=117.31  Aligned_cols=105  Identities=13%  Similarity=0.159  Sum_probs=65.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH------hCCCChHHHHHhhchhHhHHHHHHHHHHHHcC---C
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESAAKAFRESDEKGYQQAETEVLKQLSSM---G  164 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~------~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~---~  164 (278)
                      +.|+|+|+|||||||+|+.|++.+|++++++|+++++.      .| ..+.+++.. |.....+....++......   .
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g-~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~~~   78 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELG-KQAKDIMDA-GKLVTDELVIALVKERIAQEDCR   78 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTT-GGGHHHHHH-TCCCCHHHHHHHHHHHHTSGGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHH-HHHHHHHHC-CCcCCHHHHHHHHHHHHhccccC
Confidence            47999999999999999999999999999999988773      22 344555543 2211122222222222211   1


Q ss_pred             CEEEEeCCceeechhHHHhhh-----CCcEEEEEcCHHHHHhh
Q 023749          165 RLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM  202 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~~~~~L~-----~~~vV~L~a~~e~l~~R  202 (278)
                      ..+|..|  +.....+...|.     .+++|||++|++++.+|
T Consensus        79 ~~~i~dg--~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R  119 (214)
T 1e4v_A           79 NGFLLDG--FPRTIPQADAMKEAGINVDYVLEFDVPDELIVDR  119 (214)
T ss_dssp             GCEEEES--CCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHH
T ss_pred             CCEEEeC--CCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence            2234343  222222223332     46899999999999999

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.52  E-value=2.4e-13  Score=117.07  Aligned_cols=108  Identities=15%  Similarity=0.160  Sum_probs=64.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCC-C----hHHHHHhhchhHhHHHHHHHHH-HHHc---CC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-S----AAKAFRESDEKGYQQAETEVLK-QLSS---MG  164 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~-~----i~ei~~~~ge~~fr~~e~~vl~-~l~~---~~  164 (278)
                      ++|+|+|+|||||||+|+.|++++|++++++|+++++..... .    +.+++.. |..........++. .+..   ..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~l~~~~~~~   79 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDK-GELVPDEVTIGIVKERLGKDDCER   79 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcccccC
Confidence            479999999999999999999999999999999887743211 1    2222221 21111222222222 2221   23


Q ss_pred             CEEEEeCCceeechhHHH----hhh-----CCcEEEEEcCHHHHHhh-hcC
Q 023749          165 RLVVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM-DHS  205 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~~~~----~L~-----~~~vV~L~a~~e~l~~R-~~r  205 (278)
                      .+|+. |  .........    .+.     .+.+|||++|++++.+| ..|
T Consensus        80 ~~ild-g--~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  127 (216)
T 3dl0_A           80 GFLLD-G--FPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR  127 (216)
T ss_dssp             CEEEE-S--CCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred             CEEEe-C--CCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence            34443 3  222211111    121     45899999999999999 444

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=99.51  E-value=1.2e-13  Score=121.52  Aligned_cols=158  Identities=12%  Similarity=0.082  Sum_probs=92.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHHHHHHH----HHHHc
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVL----KQLSS  162 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~e~~vl----~~l~~  162 (278)
                      ++++|+|+|+|||||+|+|+.|++++|++++++++++++.....+     +.+++. .|.....++-..++    .+...
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~-~G~lVpde~~~~lv~~~l~~~~~  106 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMME-RGELVPLEVVLALLKEAMIKLVD  106 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHh-cCCCCCHHHHHHHHHHHHhhccc
Confidence            577889999999999999999999999999999999877543122     122222 23221112211222    22222


Q ss_pred             CCCEEEEeCCceeechhHHHhhh-----CCcEEEEEcCHHHHHhh-hcC----CCCCCChHHHHHHH---HHH-h---hh
Q 023749          163 MGRLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHS----GFPESEVLPQLFAL---YKE-M---RD  225 (278)
Q Consensus       163 ~~~~VI~~g~g~v~~~~~~~~L~-----~~~vV~L~a~~e~l~~R-~~r----~rp~~~~~~~l~~~---~~e-r---~~  225 (278)
                      ....+|..  |++....+...|.     .+.+|+|++|.+++.+| ..|    +|+.+ ..+.+.+.   |.+ -   ..
T Consensus       107 ~~~g~ilD--GfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD-~~e~i~~Rl~~Y~~~t~pl~~  183 (217)
T 3umf_A          107 KNCHFLID--GYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDD-NEETIVKRFRTFNELTKPVIE  183 (217)
T ss_dssp             TCSEEEEE--TBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHH-HHHHHHHHHHHHHHHTHHHHH
T ss_pred             cccCcccc--cCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence            22223333  3443333333332     56899999999999999 444    23321 22333332   221 1   12


Q ss_pred             ccccCcE--EEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          226 GYATADV--TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       226 ~Y~~AD~--vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                      +|+....  .||             ...++++|.++|.+.+.+
T Consensus       184 ~Y~~~~~l~~Id-------------g~~~~eeV~~~I~~~l~k  213 (217)
T 3umf_A          184 HYKQQNKVITID-------------ASGTVDAIFDKVNHELQK  213 (217)
T ss_dssp             HHHTTTCEEEEE-------------TTSCHHHHHHHHHHHHHT
T ss_pred             HHHhcCCEEEEE-------------CCCCHHHHHHHHHHHHHH
Confidence            3543332  455             457999999999999875

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.51  E-value=1.3e-14  Score=128.88  Aligned_cols=160  Identities=15%  Similarity=0.085  Sum_probs=92.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCc----------eecCchHHHHHhCCCChHHHHHhhchhHhHH-------HHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYY----------YFDSDSLVFEAAGGESAAKAFRESDEKGYQQ-------AET  154 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~----------~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~-------~e~  154 (278)
                      .+.+|.|+|++||||||+|+.|++.+|++          ++++|++++.... ..+.  ....|...|..       .-.
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~-~~~~--~~~~g~~~f~~~~~~d~~~l~   97 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTS-EQKA--KALKGQFNFDHPDAFDNELIL   97 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCH-HHHH--HHHTTCSCTTSGGGBCHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccCh-hhhh--hhccCCCCCCCcchhhHHHHH
Confidence            45689999999999999999999999998          7999998742111 0010  11111111110       111


Q ss_pred             HHHHHHHc------------------------CCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcC----
Q 023749          155 EVLKQLSS------------------------MGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS----  205 (278)
Q Consensus       155 ~vl~~l~~------------------------~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r----  205 (278)
                      +.|..+..                        ....||..|.. +.....+.. ..+++|||++|++++.+| ..|    
T Consensus        98 ~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~-~~~~~~~~~-~~d~vi~l~~~~e~~~~R~~~R~~~~  175 (252)
T 1uj2_A           98 KTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGIL-AFYSQEVRD-LFQMKLFVDTDADTRLSRRVLRDISE  175 (252)
T ss_dssp             HHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTT-TTSSHHHHH-HCSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeec-cccCHHHHH-hcCeeEEEeCCHHHHHHHHHHHHHhh
Confidence            34455431                        12345554421 111222111 157999999999999999 333    


Q ss_pred             -CCCCCChHHHHHHHHHHhh---------hccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749          206 -GFPESEVLPQLFALYKEMR---------DGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS  269 (278)
Q Consensus       206 -~rp~~~~~~~l~~~~~er~---------~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~  269 (278)
                       ++..    +.+.+.+..+.         +.+..||++|+.        .+|+ +.++++++++|.+++.+..+
T Consensus       176 rg~~~----e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~--------~id~-~~s~e~v~~~I~~~l~~~~~  236 (252)
T 1uj2_A          176 RGRDL----EQILSQYITFVKPAFEEFCLPTKKYADVIIPR--------GADN-LVAINLIVQHIQDILNGGPS  236 (252)
T ss_dssp             SCCCH----HHHHHHHHHTHHHHHHHHTGGGGGGCSEEEET--------GGGC-HHHHHHHHHHHHHHHHC---
T ss_pred             hCCCH----HHHHHHHHHhccHHHHHHhhhhhhcCcEEEec--------CCCC-hhHHHHHHHHHHHHHccchh
Confidence             3322    23323222211         334469999942        2345 68999999999999987764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=99.51  E-value=2.7e-13  Score=118.17  Aligned_cols=106  Identities=17%  Similarity=0.145  Sum_probs=65.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-CC----hHHHHHhhchhHhHHHHHHHHHHHHcCCCEEE
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES----AAKAFRESDEKGYQQAETEVLKQLSSMGRLVV  168 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~~----i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI  168 (278)
                      |+|+|+|+|||||+|+|+.||+++|++++++++++++.... ..    +.++. ..|...-.++-..++.+.....+++|
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~-~~G~lvpd~iv~~lv~~~l~~~~~~i   79 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYM-ERGELVPDDLIIALIEEVFPKHGNVI   79 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHH-HHTCCCCHHHHHHHHHHHCCSSSCEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHH-hcCCcCCHHHHHHHHHHhhccCCceE
Confidence            68999999999999999999999999999999988764320 11    11111 12322222332333333333333333


Q ss_pred             EeCCceeechhHHHhh----h-----CCcEEEEEcCHHHHHhh
Q 023749          169 CAGNGAVQSSANLALL----R-----HGISLWIDVPPGMVARM  202 (278)
Q Consensus       169 ~~g~g~v~~~~~~~~L----~-----~~~vV~L~a~~e~l~~R  202 (278)
                      ..  |++....+.+.|    .     .+.+|+|++|.+++.+|
T Consensus        80 lD--GfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~R  120 (206)
T 3sr0_A           80 FD--GFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIER  120 (206)
T ss_dssp             EE--SCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHH
T ss_pred             ec--CCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHH
Confidence            33  333332222222    2     35799999999999999

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=99.50  E-value=2.8e-13  Score=120.43  Aligned_cols=158  Identities=22%  Similarity=0.257  Sum_probs=90.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh------CCCChH------HHHHhh---------------
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA------GGESAA------KAFRES---------------  144 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~------g~~~i~------ei~~~~---------------  144 (278)
                      +++.|+|.|++||||||+++.|++.+|++++|.|.+++...      | .++.      +.....               
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l   86 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAG-ADLTDPAAIEKAAADAEIGVGSDPDVDAAFL   86 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHT-CCTTCHHHHHHHHHTCCEEECCCTTSCCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcC-CCchhhHHHHHHHHhCCEEEeecCCCcEEEE
Confidence            46789999999999999999999999999999999876532      2 2211      111100               


Q ss_pred             -ch---hH---------------hHHHHH---HHHHHHHcC-CCEEEEeCC--ceeechhHHHhhhCCcEEEEEcCHHHH
Q 023749          145 -DE---KG---------------YQQAET---EVLKQLSSM-GRLVVCAGN--GAVQSSANLALLRHGISLWIDVPPGMV  199 (278)
Q Consensus       145 -ge---~~---------------fr~~e~---~vl~~l~~~-~~~VI~~g~--g~v~~~~~~~~L~~~~vV~L~a~~e~l  199 (278)
                       |+   ..               +.....   .....++.. +.+|+. |-  +.+..+.      .++.|||++|++++
T Consensus        87 ~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~-GRd~gt~V~pd------a~lkifl~A~~e~R  159 (233)
T 3r20_A           87 AGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVE-GRDIGTVVLPD------ADVKIFLTASAEER  159 (233)
T ss_dssp             TTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEE-ESSCCCCCCTT------CSEEEEEECCHHHH
T ss_pred             CCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEe-cccceeEEcCC------CCEEEEEECCHHHH
Confidence             00   00               011111   112334444 555553 32  2222111      46899999999999


Q ss_pred             Hhh--h---cCCCC--CCChHHHHHHHHHHhhhcc----ccCc--EEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          200 ARM--D---HSGFP--ESEVLPQLFALYKEMRDGY----ATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       200 ~~R--~---~r~rp--~~~~~~~l~~~~~er~~~Y----~~AD--~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                      .+|  +   .++..  .++..+.+.+.-..+...|    ..++  ++||            |++++++++++.|.+++..
T Consensus       160 a~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~ID------------Ts~l~iee~v~~I~~~i~~  227 (233)
T 3r20_A          160 ARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVD------------TSDMDQAQVIAHLLDLVTA  227 (233)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEE------------CTTSCHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEE------------CCCCCHHHHHHHHHHHHHH
Confidence            998  2   12222  2223333433322222222    1243  7776            8999999999999999987


Q ss_pred             cCC
Q 023749          267 SIS  269 (278)
Q Consensus       267 ~~~  269 (278)
                      .+.
T Consensus       228 ~~~  230 (233)
T 3r20_A          228 QAG  230 (233)
T ss_dssp             ---
T ss_pred             hhc
Confidence            654

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.50  E-value=7.3e-14  Score=119.41  Aligned_cols=164  Identities=14%  Similarity=0.143  Sum_probs=88.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH----HhCCCChHHHHHhhc---h---h-HhHHHHH---HHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE----AAGGESAAKAFRESD---E---K-GYQQAET---EVL  157 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~----~~g~~~i~ei~~~~g---e---~-~fr~~e~---~vl  157 (278)
                      +|+.|+|+|++||||||+++.|++.++..+++.+.+.+.    ..| ..+.++|...+   .   . .|.....   ..+
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i   86 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIG-KLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLI   86 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHH-HHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHH-HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999987666554332210    001 11222222110   0   0 0110000   122


Q ss_pred             HHHHcCCCEEEEeCCc---e-------eechhHHHhhh-----CCcEEEEEcCHHHHHhh-hcC-CCCCC-ChHHHHHHH
Q 023749          158 KQLSSMGRLVVCAGNG---A-------VQSSANLALLR-----HGISLWIDVPPGMVARM-DHS-GFPES-EVLPQLFAL  219 (278)
Q Consensus       158 ~~l~~~~~~VI~~g~g---~-------v~~~~~~~~L~-----~~~vV~L~a~~e~l~~R-~~r-~rp~~-~~~~~l~~~  219 (278)
                      ......+..||.....   .       ......+..+.     .+++|||++|++++.+| .++ .+... +..+.+...
T Consensus        87 ~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~~~~~~~~~~~~~~~~  166 (215)
T 1nn5_A           87 KEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRC  166 (215)
T ss_dssp             HHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----CTTCSHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccchHHHHHHHHHH
Confidence            3333345566655210   0       01122222222     47899999999999999 433 22221 122344455


Q ss_pred             HHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749          220 YKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS  269 (278)
Q Consensus       220 ~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~  269 (278)
                      |.++...+....++||+             +.++++++++|.+.+...+.
T Consensus       167 ~~~~~~~~~~~~~~Id~-------------~~~~e~~~~~i~~~l~~~l~  203 (215)
T 1nn5_A          167 FHQLMKDTTLNWKMVDA-------------SKSIEAVHEDIRVLSEDAIA  203 (215)
T ss_dssp             HHHHTTCTTSCEEEEET-------------TSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCEEEEEC-------------CCCHHHHHHHHHHHHHHHHh
Confidence            55544433223367773             57999999999998876553

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.50  E-value=8e-15  Score=126.81  Aligned_cols=38  Identities=26%  Similarity=0.290  Sum_probs=35.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE  130 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~  130 (278)
                      ++.|+|+|++||||||+++.|++.+|++++|+|+++++
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~   42 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRV   42 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeeh
Confidence            56899999999999999999999999999999998875

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.50  E-value=1.2e-13  Score=119.10  Aligned_cols=153  Identities=14%  Similarity=0.218  Sum_probs=94.2

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhC------CceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALR------YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG  164 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg------~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~  164 (278)
                      -+|+.|+|+|++||||||+++.|++.++      +.++|.|.+.+...+  .. .++...++..|+.+.. ++..+...+
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~--~~-~~~~~~r~~~~~~~~~-~~~~~l~~g   98 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNK--DL-GFSEADRNENIRRIAE-VAKLFADSN   98 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTT--TC-CSSHHHHHHHHHHHHH-HHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhcc--cc-CCCHHHHHHHHHHHHH-HHHHHHHCC
Confidence            4688999999999999999999999886      778887776533221  00 1122334455555443 233444455


Q ss_pred             CEEEEeCCceeechhHHHhhh--------------CCcEEEEEcCHHHHHhhhcCCCCCCChHHHHHH----HHHHhhhc
Q 023749          165 RLVVCAGNGAVQSSANLALLR--------------HGISLWIDVPPGMVARMDHSGFPESEVLPQLFA----LYKEMRDG  226 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~~~~~L~--------------~~~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~----~~~er~~~  226 (278)
                      ..||++.. . ....+++.++              .+++|||++|++++.+|..|  +   .....+.    .+..+...
T Consensus        99 ~~VI~d~~-~-~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r--~---~~~~~r~~~~~~~~~~~~~  171 (211)
T 1m7g_A           99 SIAITSFI-S-PYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPK--G---LYKKAREGVIKEFTGISAP  171 (211)
T ss_dssp             CEEEEECC-C-CCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTT--C---HHHHHHHTSSSSCBTTTBC
T ss_pred             CEEEEecC-C-ccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhH--H---HHHHHHhcchhhhhhhhhh
Confidence            66776532 1 1122332221              15799999999999998311  1   1111111    11123334


Q ss_pred             cc---cCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          227 YA---TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       227 Y~---~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                      |.   .++++||            ++++++++++++|.+.+..
T Consensus       172 y~~~~~~~~~ID------------t~~~s~eev~~~I~~~l~~  202 (211)
T 1m7g_A          172 YEAPANPEVHVK------------NYELPVQDAVKQIIDYLDT  202 (211)
T ss_dssp             CCCCSSCSEEEE------------CSSSCHHHHHHHHHHHHHH
T ss_pred             ccCCCCCeEEEE------------CCCCCHHHHHHHHHHHHHH
Confidence            44   3677877            6777999999999999975

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.49  E-value=2e-13  Score=123.73  Aligned_cols=153  Identities=15%  Similarity=0.075  Sum_probs=90.0

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC--CChHHHHHhhch----------------hHhHH---
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ESAAKAFRESDE----------------KGYQQ---  151 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~--~~i~ei~~~~ge----------------~~fr~---  151 (278)
                      ++.|+|+|++||||||+|+.|+ .+|++++|+|.+.++.+..  ....++....|.                ..|..   
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~~~  153 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQ  153 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCHHH
Confidence            5679999999999999999999 6999999999987654320  111111111111                11111   


Q ss_pred             ---HH-----------HHHHHHHHc-CCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcC-CCCCCChHH
Q 023749          152 ---AE-----------TEVLKQLSS-MGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLP  214 (278)
Q Consensus       152 ---~e-----------~~vl~~l~~-~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~  214 (278)
                         .+           ...+..+.. ....||..|.  .+.+.++.. ..+.+|||++|++++.+| ..| +++.    +
T Consensus       154 ~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~--~l~~~~~~~-~~d~vI~l~a~~ev~~~Rl~~R~g~s~----e  226 (281)
T 2f6r_A          154 MKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAA--MLLEAGWQS-MVHEVWTVVIPETEAVRRIVERDGLSE----A  226 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECT--TTTTTTGGG-GCSEEEEEECCHHHHHHHHHHHHCCCH----H
T ss_pred             HHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEec--hhhccchHH-hCCEEEEEcCCHHHHHHHHHHcCCCCH----H
Confidence               00           011122222 2346666654  222222211 157899999999999999 433 4432    2


Q ss_pred             HHHHHHHHhh---hccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          215 QLFALYKEMR---DGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       215 ~l~~~~~er~---~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                      .+.+.+....   ..+..||++|++            + .+++++.++|.+++..
T Consensus       227 ~~~~ri~~q~~~~~~~~~AD~vIdn------------~-~s~eel~~~I~~~l~~  268 (281)
T 2f6r_A          227 AAQSRLQSQMSGQQLVEQSNVVLST------------L-WESHVTQSQVEKAWNL  268 (281)
T ss_dssp             HHHHHHHTSCCHHHHHHTCSEEEEC------------S-SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHhhHhhCCEEEEC------------C-CCHHHHHHHHHHHHHH
Confidence            2322222221   112368999984            3 4999999999888764

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.48  E-value=1.4e-14  Score=122.29  Aligned_cols=156  Identities=19%  Similarity=0.191  Sum_probs=88.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCE
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL  166 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~  166 (278)
                      +|+.|+|+|++||||||+++.|++.++     +.++|.|.+.+...+.....   .......+..+. .+...+...+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~r~~~~~~~~-~~~~~~~~~g~~   87 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFT---REERLRHLKRIA-WIARLLARNGVI   87 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCC---HHHHHHHHHHHH-HHHHHHHTTTCE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCC---hhhHHHHHHHHH-HHHHHHHhCCCE
Confidence            678999999999999999999999885     35678777644332211100   011111222111 112223344555


Q ss_pred             EEEeCCceee---chhHHHhhh----CCcEEEEEcCHHHHHhh-hcCC--CCCCChHHHHHHHHHHhhhccc---cCcEE
Q 023749          167 VVCAGNGAVQ---SSANLALLR----HGISLWIDVPPGMVARM-DHSG--FPESEVLPQLFALYKEMRDGYA---TADVT  233 (278)
Q Consensus       167 VI~~g~g~v~---~~~~~~~L~----~~~vV~L~a~~e~l~~R-~~r~--rp~~~~~~~l~~~~~er~~~Y~---~AD~v  233 (278)
                      |+..+. ...   .+..++.++    .+++|||++|++++.+| .++.  +...+   .+..++..+.. |.   .++++
T Consensus        88 vi~d~~-~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~---~~~~~~~~~~~-y~~~~~~~~~  162 (186)
T 2yvu_A           88 VICSFV-SPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKG---ELENFTGITDP-YEPPENPQLV  162 (186)
T ss_dssp             EEEECC-CCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTT---CCSSCHHHHSC-CCCCSSCSEE
T ss_pred             EEEeCc-cccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhc---chhhhhhhhhc-ccCCCCCcEE
Confidence            565432 211   111222233    35799999999999999 3210  00000   01111223333 54   47888


Q ss_pred             EecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          234 VSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       234 Id~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                      ||            +++.++++++++|.+.+.+.+
T Consensus       163 Id------------~~~~~~~ev~~~I~~~l~~~~  185 (186)
T 2yvu_A          163 LD------------TESNTIEHNVSYLYSLVKAVI  185 (186)
T ss_dssp             EE------------TTTSCHHHHHHHHHHHHHHHC
T ss_pred             EE------------CCCCCHHHHHHHHHHHHHHhc
Confidence            88            567899999999999987654

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.48  E-value=1.8e-13  Score=116.19  Aligned_cols=159  Identities=11%  Similarity=0.098  Sum_probs=91.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh-CCceecCchHH-HHHhCCCChHHHHHhhchhHhHHH-H-----------HHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLV-FEAAGGESAAKAFRESDEKGYQQA-E-----------TEVL  157 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L-g~~~iD~D~li-~~~~g~~~i~ei~~~~ge~~fr~~-e-----------~~vl  157 (278)
                      +|+.|+|+|++||||||+++.|++.+ |+++++.+... ....| ..+.++|...+  .|... +           ...+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g-~~i~~~~~~~~--~~~~~~~~~l~~~~r~~~~~~i   79 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTG-KMIDDYLTRKK--TYNDHIVNLLFCANRWEFASFI   79 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHH-HHHHHHHTSSC--CCCHHHHHHHHHHHHHTTHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHH-HHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            58899999999999999999999998 68888765432 11112 22333332211  01000 0           0122


Q ss_pred             HHHHcCCCEEEEeCCce---------eechhHHHhh-----hCCcEEEEEcCHHHHHhhhcCC--CCC-CChHHHHHHHH
Q 023749          158 KQLSSMGRLVVCAGNGA---------VQSSANLALL-----RHGISLWIDVPPGMVARMDHSG--FPE-SEVLPQLFALY  220 (278)
Q Consensus       158 ~~l~~~~~~VI~~g~g~---------v~~~~~~~~L-----~~~~vV~L~a~~e~l~~R~~r~--rp~-~~~~~~l~~~~  220 (278)
                      ......+..||..+...         .........+     ..+++|||++|++++.+  .|+  +.. .+..+.+...|
T Consensus        80 ~~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~--~R~~d~~e~~~~~~rl~~~y  157 (204)
T 2v54_A           80 QEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR--NVGEEIYEDVTFQQKVLQEY  157 (204)
T ss_dssp             HHHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT--CCSSSTTCCSHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh--hcCcccccHHHHHHHHHHHH
Confidence            22233455666543110         0111122211     25789999999999887  232  111 13344566666


Q ss_pred             HHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          221 KEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       221 ~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                      .+....|....++||            + +.++++++++|.+.+.+.+
T Consensus       158 ~~~~~~~~~~~~~Id------------~-~~~~~~v~~~i~~~l~~~l  192 (204)
T 2v54_A          158 KKMIEEGDIHWQIIS------------S-EFEEDVKKELIKNIVIEAI  192 (204)
T ss_dssp             HHHHTTCSSCEEEEC------------T-TSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcEEEEE------------C-CCCHHHHHHHHHHHHHHHH
Confidence            665544433336776            2 5799999999999987655

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.47  E-value=1e-13  Score=138.90  Aligned_cols=156  Identities=18%  Similarity=0.255  Sum_probs=99.7

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh---CCceecCchHHHHHhCCCChHHHHH-hhchhHhHHHHHHHHHHHHcCCCE
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFEAAGGESAAKAFR-ESDEKGYQQAETEVLKQLSSMGRL  166 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD~D~li~~~~g~~~i~ei~~-~~ge~~fr~~e~~vl~~l~~~~~~  166 (278)
                      .+++.|+|+|+|||||||+|+.|++.|   |++++++|....+. + ......|. ..+++.|+.+. +++..+...+..
T Consensus        50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~-~-L~~~~~fs~~dree~~r~i~-eva~~~l~~G~i  126 (630)
T 1x6v_B           50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ-G-LNKNLGFSPEDREENVRRIA-EVAKLFADAGLV  126 (630)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT-T-TTTTCCSSHHHHHHHHHHHH-HHHHHHHHTTCE
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh-c-cCccccCChhhhHHHHHHHH-HHHHHHHhCCCE
Confidence            478899999999999999999999999   99987775332221 1 11111232 34666777653 344444455555


Q ss_pred             EEEeCCceee---chhHHHhhh-C---CcEEEEEcCHHHHHhhhcCC-----CCCCChHHHHHHHHHHhhhccc---cCc
Q 023749          167 VVCAGNGAVQ---SSANLALLR-H---GISLWIDVPPGMVARMDHSG-----FPESEVLPQLFALYKEMRDGYA---TAD  231 (278)
Q Consensus       167 VI~~g~g~v~---~~~~~~~L~-~---~~vV~L~a~~e~l~~R~~r~-----rp~~~~~~~l~~~~~er~~~Y~---~AD  231 (278)
                      |+... ....   .+..++.++ .   .++|||++|++++.+|..++     |.. .    + ..+..+...|.   .+|
T Consensus       127 VI~d~-~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~-~----~-~~~~~~~~~Ye~p~~~d  199 (630)
T 1x6v_B          127 CITSF-ISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAG-E----I-KGFTGIDSEYEKPEAPE  199 (630)
T ss_dssp             EEEEC-CCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC----------CBTTTBCCCCCSSCS
T ss_pred             EEEeC-chhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhh-h----H-HHHHHhhhhhcccCCCc
Confidence            66432 2222   122333343 2   35999999999999992221     111 0    1 12345566675   578


Q ss_pred             EEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          232 VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       232 ~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                      ++||            |++.|+++++++|++++...-
T Consensus       200 lvID------------ts~~s~eevv~~Il~~L~~~~  224 (630)
T 1x6v_B          200 LVLK------------TDSCDVNDCVQQVVELLQERD  224 (630)
T ss_dssp             EEEE------------TTSSCHHHHHHHHHHHHHHTT
T ss_pred             EEEE------------CCCCCHHHHHHHHHHHHHhcC
Confidence            8888            678899999999999997653

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.47  E-value=5.8e-13  Score=117.99  Aligned_cols=118  Identities=12%  Similarity=0.078  Sum_probs=69.0

Q ss_pred             HHHHhhhhcc-CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-CC----hHHHHHhhchhHhHHHHHH
Q 023749           82 KKAADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES----AAKAFRESDEKGYQQAETE  155 (278)
Q Consensus        82 ~~~~~~~~~~-~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~~----i~ei~~~~ge~~fr~~e~~  155 (278)
                      +-+.+..... .+++|+|+|+|||||||+|+.|++++|++++++|+++++.... ..    +.+++.. |.....+.-..
T Consensus        17 ~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~   95 (243)
T 3tlx_A           17 ELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINE-GKLVDDQMVLS   95 (243)
T ss_dssp             HHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHT-TCCCCHHHHHH
T ss_pred             HHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhc-CCCCcHHHHHH
Confidence            3334444323 6789999999999999999999999999999999998875421 11    1222221 21111111112


Q ss_pred             HHHHHHcC---CCEEEEeCCceeechhHHHh----hh-----CCcEEEEEcCHHHHHhh
Q 023749          156 VLKQLSSM---GRLVVCAGNGAVQSSANLAL----LR-----HGISLWIDVPPGMVARM  202 (278)
Q Consensus       156 vl~~l~~~---~~~VI~~g~g~v~~~~~~~~----L~-----~~~vV~L~a~~e~l~~R  202 (278)
                      ++......   ...+|..|  .+........    +.     .+.+|||++|++++.+|
T Consensus        96 ~~~~~l~~~~~~~~~ildg--~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~R  152 (243)
T 3tlx_A           96 LVDEKLKTPQCKKGFILDG--YPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNR  152 (243)
T ss_dssp             HHHHHTTSGGGSSEEEEES--CCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHH
T ss_pred             HHHHHHhcccccCCEEecC--CCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHH
Confidence            22222211   22334333  2222222111    21     46899999999999999

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.47  E-value=9.3e-14  Score=116.46  Aligned_cols=153  Identities=16%  Similarity=0.200  Sum_probs=86.3

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh---CCceecCchHHHH-HhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCE
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFE-AAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL  166 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD~D~li~~-~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~  166 (278)
                      -+|+.|+|+|++||||||+++.|++.+   |+++++.|..... ... .... +....++..|+..+.. ...+...+ .
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-~   78 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLN-KNLG-FSPEDREENVRRIAEV-AKLFADAG-L   78 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTT-TTCC-SSHHHHHHHHHHHHHH-HHHHHHTT-C
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHh-hccc-cccccHHHHHHHHHHH-HHHHHHCC-C
Confidence            368899999999999999999999998   9998855432221 111 0000 1112344556554431 11122333 3


Q ss_pred             EEEeCCceee---chhHHHhhh-CC---cEEEEEcCHHHHHhh-hcCC-----CCCCChHHHHHHHHHHhhhcc---ccC
Q 023749          167 VVCAGNGAVQ---SSANLALLR-HG---ISLWIDVPPGMVARM-DHSG-----FPESEVLPQLFALYKEMRDGY---ATA  230 (278)
Q Consensus       167 VI~~g~g~v~---~~~~~~~L~-~~---~vV~L~a~~e~l~~R-~~r~-----rp~~~~~~~l~~~~~er~~~Y---~~A  230 (278)
                      ++.++.-...   ...+++.++ .+   ++|||++|++++.+| .++.     ++.-...       ......|   +.|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a  151 (179)
T 2pez_A           79 VCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGF-------TGIDSEYEKPEAP  151 (179)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHHHHHTTSSCSC-------BTTTBCCCCCSSC
T ss_pred             EEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHHHHhccccccc-------ccCCccccCCCCC
Confidence            3333211111   112222332 33   789999999999999 3220     1100000       0011222   248


Q ss_pred             cEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          231 DVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       231 D~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                      |++|+            +++.++++++++|.+.+.+
T Consensus       152 d~vid------------~~~~~~~~~~~~i~~~l~~  175 (179)
T 2pez_A          152 ELVLK------------TDSCDVNDCVQQVVELLQE  175 (179)
T ss_dssp             SEEEE------------TTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEE------------CCCCCHHHHHHHHHHHHHH
Confidence            88888            4678999999999999864

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.44  E-value=6.5e-12  Score=106.66  Aligned_cols=29  Identities=21%  Similarity=0.326  Sum_probs=27.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      +|+.|+|+|+|||||||+|+.|++.++..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~   31 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELK   31 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence            57899999999999999999999999874

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.43  E-value=3.6e-13  Score=115.22  Aligned_cols=150  Identities=17%  Similarity=0.249  Sum_probs=89.1

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR  165 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~  165 (278)
                      -+|..|+|+|++||||||+++.|++.+   |..  ++|.|.+..........   ..+.....++... .+...+...+.
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~   98 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSF---KAEDRAENIRRVG-EVAKLFADAGI   98 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCS---SHHHHHHHHHHHH-HHHHHHHHTTC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCc---ChHHHHHHHHHHH-HHHHHHHhCCc
Confidence            368899999999999999999999999   666  89988775422110100   0111112222221 23333334455


Q ss_pred             EEEEeCCceeechhHHHhhh----C--CcEEEEEcCHHHHHhhh-c------C-CCCCCChHHHHHHHHHHhhhccc---
Q 023749          166 LVVCAGNGAVQSSANLALLR----H--GISLWIDVPPGMVARMD-H------S-GFPESEVLPQLFALYKEMRDGYA---  228 (278)
Q Consensus       166 ~VI~~g~g~v~~~~~~~~L~----~--~~vV~L~a~~e~l~~R~-~------r-~rp~~~~~~~l~~~~~er~~~Y~---  228 (278)
                      .++.+...  ..+..++.++    .  .++|||++|++++.+|. +      | +... . ...+       ...|.   
T Consensus        99 ~vi~~~~~--~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~-~-~~~~-------~~~~~~~~  167 (200)
T 3uie_A           99 ICIASLIS--PYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIK-G-FTGI-------DDPYEPPL  167 (200)
T ss_dssp             EEEEECCC--CCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSC-S-CBTT-------TBCCCCCS
T ss_pred             eEEEecCC--chHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCC-C-CCCC-------CCcCcCCC
Confidence            56654322  1233444332    1  25699999999999982 1      1 1110 0 0011       12243   


Q ss_pred             cCcEEEecCcccccccccCCCC-CCHHHHHHHHHHHhhhc
Q 023749          229 TADVTVSLQKVASQLGYDDLDA-VTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       229 ~AD~vId~~~va~~~~~~Dts~-~tpeeva~~I~~~i~~~  267 (278)
                      .++++||            |++ +|+++++++|++++...
T Consensus       168 ~~~~~id------------t~~~~~~~e~v~~i~~~l~~~  195 (200)
T 3uie_A          168 NCEISLG------------REGGTSPIEMAEKVVGYLDNK  195 (200)
T ss_dssp             SCSEEEC------------CSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEe------------cCCCCCHHHHHHHHHHHHHHc
Confidence            4778887            677 79999999999999754

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=99.43  E-value=6.7e-14  Score=139.08  Aligned_cols=159  Identities=16%  Similarity=0.193  Sum_probs=94.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC----C--ceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR----Y--YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR  165 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg----~--~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~  165 (278)
                      +++.|+|+|++||||||+|+.|+++|+    +  .++|.|.+.....+.....   .....+.++.+ ..++..+...+.
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~---~~er~~~i~ri-~~v~~~~~~~g~  470 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFT---REDRHTNIQRI-AFVATELTRAGA  470 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCS---HHHHHHHHHHH-HHHHHHHHHTTC
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCC---hhHHHHHHHHH-HHHHHHHHhCCC
Confidence            467899999999999999999999987    3  4667676655433211110   11112222222 124455555566


Q ss_pred             EEEEeCCceee--chhHHHhhh-CC--cEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc--cCcEEEecCc
Q 023749          166 LVVCAGNGAVQ--SSANLALLR-HG--ISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--TADVTVSLQK  238 (278)
Q Consensus       166 ~VI~~g~g~v~--~~~~~~~L~-~~--~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~--~AD~vId~~~  238 (278)
                      .||++.-....  ....++.++ .+  ++|||++|++++.+|..++.........+..++..+.++|.  .+|++||   
T Consensus       471 ~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l~~~~~~~~i~~~~~~r~~~~~p~~~dl~ID---  547 (573)
T 1m8p_A          471 AVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVD---  547 (573)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTBCCCCCSSCSEEEC---
T ss_pred             EEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccchhhhhHHHHHHHHhccccccccCCCCEEEE---
Confidence            67765211100  012233344 35  79999999999999932221000000012223345556554  5788887   


Q ss_pred             ccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          239 VASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       239 va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                               |+++|+++++++|++++.+
T Consensus       548 ---------ts~~s~eevv~~Il~~l~~  566 (573)
T 1m8p_A          548 ---------FSKQSVRSIVHEIILVLES  566 (573)
T ss_dssp             ---------TTTSCHHHHHHHHHHHHHH
T ss_pred             ---------CCCCCHHHHHHHHHHHHHh
Confidence                     7889999999999999975

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.43  E-value=1.3e-12  Score=111.59  Aligned_cols=157  Identities=18%  Similarity=0.249  Sum_probs=88.1

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHH------------HHhC---CCC---hHHHHHhhchhHhHHH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF------------EAAG---GES---AAKAFRESDEKGYQQA  152 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~------------~~~g---~~~---i~ei~~~~ge~~fr~~  152 (278)
                      .+|+.|+|+|++||||||+|+.|++.++.++++.|.+.+            +.+.   ..+   ...+|...+...++  
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   85 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMN--   85 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH--
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH--
Confidence            368899999999999999999999999888777643221            1111   000   11122211111111  


Q ss_pred             HHHHHHHHHcCCCEEEEeCCc---eeec-------hhHHHh----h-hCCcEEEEEcCHHHHHhh-hcC-CCCCC-ChHH
Q 023749          153 ETEVLKQLSSMGRLVVCAGNG---AVQS-------SANLAL----L-RHGISLWIDVPPGMVARM-DHS-GFPES-EVLP  214 (278)
Q Consensus       153 e~~vl~~l~~~~~~VI~~g~g---~v~~-------~~~~~~----L-~~~~vV~L~a~~e~l~~R-~~r-~rp~~-~~~~  214 (278)
                         .+......+..||..+..   .+..       ......    + ..+++|||++|++++.+| .++ .+... +...
T Consensus        86 ---~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~r~~~~~~~~  162 (212)
T 2wwf_A           86 ---EIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQK  162 (212)
T ss_dssp             ---HHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSSTTCSHHHHH
T ss_pred             ---HHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcccccHHHHHH
Confidence               122222234456654321   1110       111111    1 257899999999999999 433 33221 1122


Q ss_pred             HHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          215 QLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       215 ~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                      .+..+|.++..  ..++++||+             +.++++++++|.+.+.+.
T Consensus       163 ~~~~~~~~~~~--~~~~~~Id~-------------~~~~~~~~~~i~~~l~~~  200 (212)
T 2wwf_A          163 KIYETYKHFAH--EDYWINIDA-------------TRKIEDIHNDIVKEVTKI  200 (212)
T ss_dssp             HHHHHGGGGTT--CTTEEEEEC-------------SSCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhc--cCCEEEEEC-------------CCCHHHHHHHHHHHHHHh
Confidence            23333433322  246788883             379999999999999766

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.40  E-value=1.2e-12  Score=116.26  Aligned_cols=106  Identities=16%  Similarity=0.161  Sum_probs=68.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC-C----CChHHHHHhhchhHhHHHHHHHHHH-HHc---C
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-G----ESAAKAFRESDEKGYQQAETEVLKQ-LSS---M  163 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g-~----~~i~ei~~~~ge~~fr~~e~~vl~~-l~~---~  163 (278)
                      -+++.|+|+|||||||+|+.|++++|++++++++++++... +    ..+.+++. .|.....++...++.+ +..   .
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~-~G~lvpdei~~~ll~~~l~~~~~~   86 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMD-EGKLVPDSLIIGLVKERLKEADCA   86 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHSGGGT
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHh-hccccccHHHHHHHHHHHhCcccC
Confidence            46789999999999999999999999999999998877421 1    22333333 2443344444344433 322   2


Q ss_pred             CCEEEEeCCceeechhHHHhhh-----CCcEEEEEcCHHHHHhh
Q 023749          164 GRLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM  202 (278)
Q Consensus       164 ~~~VI~~g~g~v~~~~~~~~L~-----~~~vV~L~a~~e~l~~R  202 (278)
                      ..+|++   |++....+.+.|.     .+.+|||++|.+++.+|
T Consensus        87 ~g~ILD---GfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~R  127 (230)
T 3gmt_A           87 NGYLFD---GFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIER  127 (230)
T ss_dssp             TCEEEE---SCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHH
T ss_pred             CCeEec---CCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHH
Confidence            334443   3333333333343     46899999999999999

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.37  E-value=3.1e-12  Score=109.67  Aligned_cols=155  Identities=10%  Similarity=0.056  Sum_probs=85.7

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHHHhCC-----------------------ceecCchHHHHHhCCCChHHHHHhhch
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLADALRY-----------------------YYFDSDSLVFEAAGGESAAKAFRESDE  146 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~-----------------------~~iD~D~li~~~~g~~~i~ei~~~~ge  146 (278)
                      ..+|+.|+|+|+|||||||+++.|++.++-                       .+++.|.+.+....+..+ +.....+.
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   87 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFL-EFDKYANN   87 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEE-EEEEETTE
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCE-EeHHhCCC
Confidence            357899999999999999999999998842                       223333332221110100 00000011


Q ss_pred             hHhHHHHHHHHHHHHcCCCEEEEeCCceeechhHHHhhh---C--C-cEEEEE-cCHHHHHhh-hcCCCCCCChHHHHHH
Q 023749          147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLR---H--G-ISLWID-VPPGMVARM-DHSGFPESEVLPQLFA  218 (278)
Q Consensus       147 ~~fr~~e~~vl~~l~~~~~~VI~~g~g~v~~~~~~~~L~---~--~-~vV~L~-a~~e~l~~R-~~r~rp~~~~~~~l~~  218 (278)
                      .....  ...+..+...+..||..+     +......++   .  . ++|||+ +|++++.+| ..|++..   .+.+.+
T Consensus        88 ~~~~~--~~~i~~~l~~g~~vi~d~-----~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~---~~~i~~  157 (204)
T 2qor_A           88 FYGTL--KSEYDLAVGEGKICLFEM-----NINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEK---PEEINK  157 (204)
T ss_dssp             EEEEE--HHHHHHHHHTTCEEEEEC-----CHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSC---HHHHHH
T ss_pred             eecCC--HHHHHHHHHcCCeEEEEE-----CHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCC---HHHHHH
Confidence            00111  112333333344444332     112222222   2  3 789999 999999999 6666532   233332


Q ss_pred             -HHHHhhhc---c-ccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749          219 -LYKEMRDG---Y-ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS  269 (278)
Q Consensus       219 -~~~er~~~---Y-~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~  269 (278)
                       +...+.+.   | ..+|.+|++             + ++++++++|.+++.+.++
T Consensus       158 rl~~~~~~~~~~~~~~~d~vi~n-------------~-~~e~~~~~i~~~i~~~~~  199 (204)
T 2qor_A          158 RMQELTREMDEADKVGFNYFIVN-------------D-DLARTYAELREYLLGSYP  199 (204)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEC-------------S-SHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhhhccCcEEEEC-------------c-CHHHHHHHHHHHHHHHhh
Confidence             22222232   3 368998873             2 899999999999987764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.36  E-value=6.4e-12  Score=110.67  Aligned_cols=162  Identities=10%  Similarity=0.089  Sum_probs=87.1

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhC--CceecCch--------HHHHHhCCCChHHHHHhhchhH-hHHHHHHH---
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDS--------LVFEAAGGESAAKAFRESDEKG-YQQAETEV---  156 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg--~~~iD~D~--------li~~~~g~~~i~ei~~~~ge~~-fr~~e~~v---  156 (278)
                      -+|+.|+|.|++||||||+++.|++.++  +.++.+..        .+.+.+....   .+....+.. |.......   
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~~~~~~~~---~~~~~~~~ll~~a~r~~~~~~  100 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGN---DMDIRTEAMLFAASRREHLVL  100 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHHHHTTC------CCHHHHHHHHHHHHHHHCCC
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999996  45543311        1222111000   000000000 11100011   


Q ss_pred             -HHHHHcCCCEEEEe----------CCceeechhHHHh---h-----hCCcEEEEEcCHHHHHhh-hcCCCC----CCC-
Q 023749          157 -LKQLSSMGRLVVCA----------GNGAVQSSANLAL---L-----RHGISLWIDVPPGMVARM-DHSGFP----ESE-  211 (278)
Q Consensus       157 -l~~l~~~~~~VI~~----------g~g~v~~~~~~~~---L-----~~~~vV~L~a~~e~l~~R-~~r~rp----~~~-  211 (278)
                       +......+..||+.          |.+--+....+..   +     ..+++|||++|++++.+| ..|++.    ..+ 
T Consensus       101 ~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e~~~  180 (229)
T 4eaq_A          101 KVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQED  180 (229)
T ss_dssp             CCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCCHHH
T ss_pred             HHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchhhhh
Confidence             11222345567766          4322222222111   1     257899999999999999 555432    111 


Q ss_pred             --hHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          212 --VLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       212 --~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                        ..+.+...|.+....|...-.+||             .+.++|++.++|.+.+.+.+
T Consensus       181 ~~~~~rv~~~y~~l~~~~~~~~~vID-------------a~~s~eev~~~I~~~l~~~l  226 (229)
T 4eaq_A          181 LKFHEKVIEGYQEIIHNESQRFKSVN-------------ADQPLENVVEDTYQTIIKYL  226 (229)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTTEEEEE-------------TTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEe-------------CCCCHHHHHHHHHHHHHHHh
Confidence              122333445444433332335677             35799999999999998654

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.32  E-value=7.4e-12  Score=105.54  Aligned_cols=151  Identities=12%  Similarity=-0.006  Sum_probs=84.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCC-ceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRY-YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG  171 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~-~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g  171 (278)
                      |..|+|+|++||||||+++.|++.++. .+++.|.+.+....+..............+..++.. .......+..++..+
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~ild~   80 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL-TVNFLLAQNDVVLDY   80 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHH-HHHHHHTTCEEEEES
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHH-HHHHHhcCCcEEEee
Confidence            568999999999999999999998865 788888765432211111111000111223333222 222222333333333


Q ss_pred             CceeechhH----HHhhh------CCcEEEEEcCHHHHHhh-hcCCCC-CCChHHHHHHHHHHhhhccccCcEEEecCcc
Q 023749          172 NGAVQSSAN----LALLR------HGISLWIDVPPGMVARM-DHSGFP-ESEVLPQLFALYKEMRDGYATADVTVSLQKV  239 (278)
Q Consensus       172 ~g~v~~~~~----~~~L~------~~~vV~L~a~~e~l~~R-~~r~rp-~~~~~~~l~~~~~er~~~Y~~AD~vId~~~v  239 (278)
                         +..+..    .+.++      ...++||++|++++.+| ..|... .-+. ..+.. ++++...+..++.+|+    
T Consensus        81 ---~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~-~~~~~-~~~~~~~~~~~~~ii~----  151 (189)
T 2bdt_A           81 ---IAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGE-RCLEL-VEEFESKGIDERYFYN----  151 (189)
T ss_dssp             ---CCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CG-GGGHH-HHHHHHTTCCTTSEEE----
T ss_pred             ---ccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCH-HHHHH-HHHHhhcCCCccEEEe----
Confidence               122221    12221      12468999999999999 555432 1111 22334 5666666555667777    


Q ss_pred             cccccccCCCCC---CHHHHHHHHH
Q 023749          240 ASQLGYDDLDAV---TTEDMTLEVK  261 (278)
Q Consensus       240 a~~~~~~Dts~~---tpeeva~~I~  261 (278)
                              |+..   ++++++++|.
T Consensus       152 --------tsh~~~~~~e~~~~~i~  168 (189)
T 2bdt_A          152 --------TSHLQPTNLNDIVKNLK  168 (189)
T ss_dssp             --------CSSSCGGGHHHHHHHHH
T ss_pred             --------CCCCChhhHHHHHHHHh
Confidence                    5666   8999999998

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.32  E-value=7.5e-12  Score=107.13  Aligned_cols=163  Identities=13%  Similarity=0.066  Sum_probs=92.0

Q ss_pred             hhccC-CcEEEEEccCCCcHHHHHHHHHHHh-CCceecCchHHHHHhCCCCh-H------HHHHhhchhHhHHHHHHHHH
Q 023749           88 STELK-GTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGESA-A------KAFRESDEKGYQQAETEVLK  158 (278)
Q Consensus        88 ~~~~~-~~~I~L~G~~GSGKSTlAk~LAe~L-g~~~iD~D~li~~~~g~~~i-~------ei~~~~ge~~fr~~e~~vl~  158 (278)
                      .+.+. +..|+|+|++||||||+++.|++.+ ++.+++.|.++..... ... .      ++........+.+.-...+.
T Consensus        15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~   93 (207)
T 2qt1_A           15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESE-IETDKNGFLQYDVLEALNMEKMMSAISCWME   93 (207)
T ss_dssp             CCCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGG-SCBCTTSCBCCSSGGGBCHHHHHHHHHHHHH
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhH-hhccccCCChhHHHHHhHHHHHHHHHHHHHh
Confidence            34443 6689999999999999999999988 8999999987642211 000 0      00000000111111011122


Q ss_pred             HHH-----------cCCCEEEEeCCceeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHH----HHHH
Q 023749          159 QLS-----------SMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFPESEVLPQLF----ALYK  221 (278)
Q Consensus       159 ~l~-----------~~~~~VI~~g~g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~----~~~~  221 (278)
                      ...           .....||..|.  .... ...... .+.+|||++|++++.+| ..|++..++..+.+.    ..|.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~vi~eg~--~~~~-~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~~~  170 (207)
T 2qt1_A           94 SARHSVVSTDQESAEEIPILIIEGF--LLFN-YKPLDTIWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYL  170 (207)
T ss_dssp             HHTTSSCCC-----CCCCEEEEECT--TCTT-CGGGTTTCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHHHH
T ss_pred             CCCCCCcCCCeeecCCCCEEEEeeh--HHcC-cHHHHHhcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHHHH
Confidence            110           11345555552  2211 111122 57899999999999999 566654333222232    2333


Q ss_pred             Hhhhccc-cCcEE--EecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          222 EMRDGYA-TADVT--VSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       222 er~~~Y~-~AD~v--Id~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                      ++...|. .+|.+  ||+             +.+++++.++|.+.+.+.
T Consensus       171 ~~~~~~~~~~~~v~~Id~-------------~~~~eev~~~I~~~l~~~  206 (207)
T 2qt1_A          171 KYRQEMQDITWEVVYLDG-------------TKSEEDLFLQVYEDLIQE  206 (207)
T ss_dssp             HHHHHGGGCSSCCEEEET-------------TSCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhcCCeEEEecC-------------CCCHHHHHHHHHHHHHhh
Confidence            3333344 46655  663             479999999999998754

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.32  E-value=2.2e-12  Score=127.50  Aligned_cols=157  Identities=17%  Similarity=0.216  Sum_probs=92.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCC-----ceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCE
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRY-----YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL  166 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~-----~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~  166 (278)
                      .++.|+|+|++||||||+|+.|++.|+.     .++|.|.+.+...+.....   .......++.+. .+...+...+..
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~---~~er~~~l~~i~-~~~~~~l~~G~~  446 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFS---KEDRITNILRVG-FVASEIVKHNGV  446 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSS---HHHHHHHHHHHH-HHHHHHHHTTCE
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhccccccc---HHHHHHHHHHHH-HHHHHHHhCCCE
Confidence            3678999999999999999999999874     7889887765544311111   011111122211 123333344445


Q ss_pred             EEEeCCceeechhHHH----hhh-CC-cEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc--cCcEEEecCc
Q 023749          167 VVCAGNGAVQSSANLA----LLR-HG-ISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA--TADVTVSLQK  238 (278)
Q Consensus       167 VI~~g~g~v~~~~~~~----~L~-~~-~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~--~AD~vId~~~  238 (278)
                      ||..+.  ...+..++    .++ .+ ++|||++|++++.+|..|+....+....+..++..+.+++.  .+|++||   
T Consensus       447 VI~d~~--~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr~~~e~~~~adivID---  521 (546)
T 2gks_A          447 VICALV--SPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDDPYEPPVAPEVRVD---  521 (546)
T ss_dssp             EEEECC--CCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTTBCCCCCSSCSEEEE---
T ss_pred             EEEEcC--CCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhhhccccccCCcEEEE---
Confidence            554421  12222222    232 35 79999999999999932321001111234334444445443  5899998   


Q ss_pred             ccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          239 VASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       239 va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                               +++.|+++++++|.+++.+
T Consensus       522 ---------ts~~s~eev~~~I~~~L~~  540 (546)
T 2gks_A          522 ---------TTKLTPEESALKILEFLKK  540 (546)
T ss_dssp             ---------TTTSCHHHHHHHHHHHHHH
T ss_pred             ---------CCCCCHHHHHHHHHHHHHH
Confidence                     5678999999999999864

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=99.26  E-value=2e-12  Score=120.72  Aligned_cols=113  Identities=20%  Similarity=0.262  Sum_probs=85.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH--------------HHHHhCCC-----ChHHH-HHhhchhHhHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--------------VFEAAGGE-----SAAKA-FRESDEKGYQQ  151 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l--------------i~~~~g~~-----~i~ei-~~~~ge~~fr~  151 (278)
                      +++.|+|+||+||||||+|..||++++..+||+|.+              .++..| .     ++.+. ...++...|++
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~g-vphhlidi~~~~~e~~s~~~F~~  117 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGG-VPHHLLGEVDPARGELTPADFRS  117 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTT-CCEESSSCBCGGGCCCCHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcC-CCEeeccccCcccCccCHHHHHH
Confidence            456899999999999999999999999999999997              344433 2     33444 45667788999


Q ss_pred             HHHHHHHHHHcCCCEEEEeCCceeechhHHH---------------------hhh-CCcEEEEEcCHHHHHhh-hcC
Q 023749          152 AETEVLKQLSSMGRLVVCAGNGAVQSSANLA---------------------LLR-HGISLWIDVPPGMVARM-DHS  205 (278)
Q Consensus       152 ~e~~vl~~l~~~~~~VI~~g~g~v~~~~~~~---------------------~L~-~~~vV~L~a~~e~l~~R-~~r  205 (278)
                      .+..++.++...+..+|.+||+.++....+.                     .++ ..++|||+++.+++.+| +.|
T Consensus       118 ~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R  194 (339)
T 3a8t_A          118 LAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKR  194 (339)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHHHHhh
Confidence            8888898888778888889886433222211                     122 34789999999999999 554

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.25  E-value=2.1e-11  Score=102.47  Aligned_cols=159  Identities=16%  Similarity=0.088  Sum_probs=92.0

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCc--eecCchHHHHHhCCCChHHHHHhhchhH---hHHHHHHHHHHHHcCCC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYY--YFDSDSLVFEAAGGESAAKAFRESDEKG---YQQAETEVLKQLSSMGR  165 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~--~iD~D~li~~~~g~~~i~ei~~~~ge~~---fr~~e~~vl~~l~~~~~  165 (278)
                      -+|..|+|+|++||||||+++.|+..++..  +++.|++...... .....++.+.+...   +..+.. ........+.
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~-~~~~~~~~~~~~~~~~v~~~l~~-~~~~~~~~~~   84 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKH-GRIDPWLPQSHQQNRMIMQIAAD-VAGRYAKEGY   84 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCS-SCCCTTSSSHHHHHHHHHHHHHH-HHHHHHHTSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhc-ccccCCccchhhhhHHHHHHHHH-HHHHHhccCC
Confidence            358899999999999999999999876555  7888887543221 11111111111110   111100 0111122222


Q ss_pred             EEEEeCCceeechhHHHhh---h-CCcEEEEEcCHHHHHhh-hcCCCCC-CChHHHHHHHHHHhhhccccCcEEEecCcc
Q 023749          166 LVVCAGNGAVQSSANLALL---R-HGISLWIDVPPGMVARM-DHSGFPE-SEVLPQLFALYKEMRDGYATADVTVSLQKV  239 (278)
Q Consensus       166 ~VI~~g~g~v~~~~~~~~L---~-~~~vV~L~a~~e~l~~R-~~r~rp~-~~~~~~l~~~~~er~~~Y~~AD~vId~~~v  239 (278)
                      .++..+   +....+++.+   . ....+++.++.+++..| ..|+.+. .+ .+.+..+++.+.+.|..++++|+    
T Consensus        85 ~~~~~~---~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~lld-~~~~~~~~~~~~~l~~~~~~~i~----  156 (191)
T 1zp6_A           85 FVILDG---VVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSD-PLVVADLHSQFADLGAFEHHVLP----  156 (191)
T ss_dssp             EEEECS---CCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCC-HHHHHHHHHHTTCCGGGGGGEEE----
T ss_pred             eEEEec---cCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCccCC-HHHHHHHHHHHhccCcccccEEE----
Confidence            333221   1111122222   2 22579999999999999 4444332 12 34566677777776655667777    


Q ss_pred             cccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          240 ASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       240 a~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                              |++.++++++++|.+.+...
T Consensus       157 --------t~~~~~~~~~~~i~~~l~~~  176 (191)
T 1zp6_A          157 --------VSGKDTDQALQSAINALQSG  176 (191)
T ss_dssp             --------CTTCCTTTTTTTTHHHHHHT
T ss_pred             --------CCCCCHHHHHHHHHHHHHhh
Confidence                    56789999999999988643

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.22  E-value=5.8e-10  Score=97.40  Aligned_cols=161  Identities=18%  Similarity=0.166  Sum_probs=87.4

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhC---CceecCc--------hHHHHHhC-C----CCh-HH--HHHhhchhHhHH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSD--------SLVFEAAG-G----ESA-AK--AFRESDEKGYQQ  151 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg---~~~iD~D--------~li~~~~g-~----~~i-~e--i~~~~ge~~fr~  151 (278)
                      .+|+.|+|.|++||||||+++.|++.|+   +.++.+.        ..+++.+. +    .+. .+  +|..   ..+..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a---~R~~~   80 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFA---ARAQH   80 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHH---HHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHH---HHHHH
Confidence            5789999999999999999999999884   4443221        11222111 0    000 00  0000   01111


Q ss_pred             HHHHHHHHHHcCCCEEEEeCC----------ceeechhHH---Hh-----hhCCcEEEEEcCHHHHHhh-hcCC---CCC
Q 023749          152 AETEVLKQLSSMGRLVVCAGN----------GAVQSSANL---AL-----LRHGISLWIDVPPGMVARM-DHSG---FPE  209 (278)
Q Consensus       152 ~e~~vl~~l~~~~~~VI~~g~----------g~v~~~~~~---~~-----L~~~~vV~L~a~~e~l~~R-~~r~---rp~  209 (278)
                      .+. ++......+..||+...          +--.+....   ..     .+++++|||++|++++.+| ..|+   +.+
T Consensus        81 ~~~-~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E  159 (213)
T 4edh_A           81 LAG-VIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFE  159 (213)
T ss_dssp             HHH-THHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCTTT
T ss_pred             HHH-HHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCccc
Confidence            111 12222334667776531          000111111   11     1268999999999999999 5553   222


Q ss_pred             CC---hHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          210 SE---VLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       210 ~~---~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                      .+   ..+.+...|.+....|...-++||             .+.++|++.++|.+.+.+.+
T Consensus       160 ~~~~~~~~rv~~~y~~l~~~~~~~~~vID-------------a~~s~eeV~~~I~~~l~~~l  208 (213)
T 4edh_A          160 QEDRRFFEAVRQTYLQRAAQAPERYQVLD-------------AGLPLAEVQAGLDRLLPNLL  208 (213)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHCTTTEEEEE-------------TTSCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHCCCcEEEEe-------------CCCCHHHHHHHHHHHHHHHH
Confidence            21   223344445544333333346777             35799999999999887654

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.21  E-value=1e-10  Score=103.02  Aligned_cols=107  Identities=10%  Similarity=0.092  Sum_probs=62.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh-CCCCh----HHHHHhhchhHhHHHHHHHH-HHHHc--C
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGESA----AKAFRESDEKGYQQAETEVL-KQLSS--M  163 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~-g~~~i----~ei~~~~ge~~fr~~e~~vl-~~l~~--~  163 (278)
                      ++..|+|+|++||||||+++.|++++|+..++.++++.... .+..+    ..++. .+...+.....+.+ ..+..  .
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~v~~~l~~~l~~~~~  104 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIE-KSLLVPDHVITRLMMSELENRRG  104 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTCTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhcCC
Confidence            46799999999999999999999999999999888765422 10111    11221 12111121111222 22321  2


Q ss_pred             CCEEEEeCCceeechhHHHhh---h-CCcEEEEEcCHHHHHhh
Q 023749          164 GRLVVCAGNGAVQSSANLALL---R-HGISLWIDVPPGMVARM  202 (278)
Q Consensus       164 ~~~VI~~g~g~v~~~~~~~~L---~-~~~vV~L~a~~e~l~~R  202 (278)
                      ..+++ .|..  ........+   . .+++|||++|++++.+|
T Consensus       105 ~~~il-~g~~--~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r  144 (246)
T 2bbw_A          105 QHWLL-DGFP--RTLGQAEALDKICEVDLVISLNIPFETLKDR  144 (246)
T ss_dssp             SCEEE-ESCC--CSHHHHHHHHTTCCCCEEEEEECCHHHHHHH
T ss_pred             CeEEE-ECCC--CCHHHHHHHHhhcCCCEEEEEECCHHHHHHH
Confidence            23333 2311  111111222   2 57899999999999888

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=99.19  E-value=2.4e-10  Score=99.24  Aligned_cols=161  Identities=13%  Similarity=0.101  Sum_probs=81.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh--CCceecC----c----hHHHHHh-CCCChH---H--HHHhhchhHhHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDS----D----SLVFEAA-GGESAA---K--AFRESDEKGYQQAETE  155 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L--g~~~iD~----D----~li~~~~-g~~~i~---e--i~~~~ge~~fr~~e~~  155 (278)
                      +|+-|+|.|+.||||||+++.|++.|  |++++-+    +    ..+.+.+ ++..+.   +  +|...+   +...+..
T Consensus         1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R---~~~~~~~   77 (205)
T 4hlc_A            1 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASR---REHLVLK   77 (205)
T ss_dssp             -CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHH---HHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHH---HHHHHHH
Confidence            46789999999999999999999998  4554421    1    1122211 101100   0  011100   1111111


Q ss_pred             HHHHHHcCCCEEEEeCCc---ee-------echhH---HHh-----hhCCcEEEEEcCHHHHHhh-hcCCCCCC----Ch
Q 023749          156 VLKQLSSMGRLVVCAGNG---AV-------QSSAN---LAL-----LRHGISLWIDVPPGMVARM-DHSGFPES----EV  212 (278)
Q Consensus       156 vl~~l~~~~~~VI~~g~g---~v-------~~~~~---~~~-----L~~~~vV~L~a~~e~l~~R-~~r~rp~~----~~  212 (278)
                      +... ...+..||+...-   ..       .+...   +..     ++++++|||++|+++..+| .+|++..+    +.
T Consensus        78 i~p~-l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~~  156 (205)
T 4hlc_A           78 VIPA-LKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQED  156 (205)
T ss_dssp             HHHH-HHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHHH
T ss_pred             HHHH-HHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhccC
Confidence            2222 2346677765310   00       01111   111     1268999999999999999 66654321    11


Q ss_pred             HHHHHH---HHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749          213 LPQLFA---LYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS  269 (278)
Q Consensus       213 ~~~l~~---~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~  269 (278)
                      .+.+++   .|.+....+..-=.+||             .+.++|++.++|.+.+.+.+.
T Consensus       157 ~~f~~~v~~~Y~~l~~~~~~~~~~ID-------------a~~~~e~V~~~i~~~i~~~L~  203 (205)
T 4hlc_A          157 LKFHEKVIEGYQEIIHNESQRFKSVN-------------ADQPLENVVEDTYQTIIKYLE  203 (205)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEE-------------TTSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEE-------------CCCCHHHHHHHHHHHHHHHHh
Confidence            222222   33332211111124666             457999999999999887654

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=99.19  E-value=9.6e-11  Score=104.29  Aligned_cols=32  Identities=13%  Similarity=0.053  Sum_probs=28.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh-CCceec
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYFD  123 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L-g~~~iD  123 (278)
                      .++.|+|.|++||||||+++.|++.| ++.++.
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~   55 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP   55 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence            57899999999999999999999998 676664

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=99.18  E-value=6.5e-10  Score=98.75  Aligned_cols=164  Identities=16%  Similarity=0.224  Sum_probs=84.8

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC----hHHHHHhh------c--hh--HhHHHHHH-
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES----AAKAFRES------D--EK--GYQQAETE-  155 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~----i~ei~~~~------g--e~--~fr~~e~~-  155 (278)
                      .+|+.|+|.|++||||||+++.|++.|+...++.-.+.++..| ..    +.+++...      .  .+  .|.....+ 
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~-t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~  103 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGG-TLLAEKLRALVKEEHPGEELQDITELLLVYAARVQL  103 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS-SHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCC-CHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999884332220000000001 11    11111100      0  00  01111111 


Q ss_pred             ---HHHHHHcCCCEEEEeCC----------ceeechhHH---H--h---hhCCcEEEEEcCHHHHHhh-hcCC---CCCC
Q 023749          156 ---VLKQLSSMGRLVVCAGN----------GAVQSSANL---A--L---LRHGISLWIDVPPGMVARM-DHSG---FPES  210 (278)
Q Consensus       156 ---vl~~l~~~~~~VI~~g~----------g~v~~~~~~---~--~---L~~~~vV~L~a~~e~l~~R-~~r~---rp~~  210 (278)
                         ++......+..||+...          +--++....   .  .   ++++++|||++|++++.+| .+|+   +.+.
T Consensus       104 ~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~E~  183 (236)
T 3lv8_A          104 VENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIEK  183 (236)
T ss_dssp             HHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCTTTT
T ss_pred             HHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhh
Confidence               12222234667776521          000111111   1  1   1268999999999999999 5554   2222


Q ss_pred             C---hHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749          211 E---VLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS  269 (278)
Q Consensus       211 ~---~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~  269 (278)
                      +   ..+.+.+.|.+....+.. .++||             .+.++|++.++|.+.+.+.+.
T Consensus       184 ~~~~~~~rv~~~y~~la~~~~~-~~vID-------------a~~sieeV~~~I~~~l~~~l~  231 (236)
T 3lv8_A          184 MDISFFERARERYLELANSDDS-VVMID-------------AAQSIEQVTADIRRALQDWLS  231 (236)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCTT-EEEEE-------------TTSCHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHCCC-EEEEe-------------CCCCHHHHHHHHHHHHHHHHH
Confidence            2   223344444443332222 46777             357999999999999987663

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.18  E-value=9.2e-11  Score=105.75  Aligned_cols=111  Identities=11%  Similarity=0.112  Sum_probs=66.2

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh-CCceecCchHHHHHhCCCChH--HHHHhhchhHhHHHHHHHHHHHH---cCCCE
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGESAA--KAFRESDEKGYQQAETEVLKQLS---SMGRL  166 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L-g~~~iD~D~li~~~~g~~~i~--ei~~~~ge~~fr~~e~~vl~~l~---~~~~~  166 (278)
                      ++.|+|+|+|||||||+|+.|++++ |++++++|.+.+...+ ....  .-+...++..+.+.-...+....   ..+..
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~   80 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA-HEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKG   80 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTT-SCCCC---CCHHHHHHHHHHHHHHHHHHTTSCTTCCE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhcc-CCcccccccchhhhhHHHHHHHHHHHHHHhhccCCCE
Confidence            4689999999999999999999985 9999999977665543 2110  01111122223222223334444   33444


Q ss_pred             EEEeCCceeechhHHHhh----h-CC---cEEEEEcCHHHHHhh-hcCC
Q 023749          167 VVCAGNGAVQSSANLALL----R-HG---ISLWIDVPPGMVARM-DHSG  206 (278)
Q Consensus       167 VI~~g~g~v~~~~~~~~L----~-~~---~vV~L~a~~e~l~~R-~~r~  206 (278)
                      ||..+.  ......++.+    + .+   .+|||++|++++.+| ..|+
T Consensus        81 vi~d~~--~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~  127 (301)
T 1ltq_A           81 VIISDT--NLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG  127 (301)
T ss_dssp             EEECSC--CCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCG
T ss_pred             EEEeCC--CCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhcc
Confidence            554332  2222222212    2 22   689999999999999 5554

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.17  E-value=1.6e-10  Score=102.14  Aligned_cols=158  Identities=18%  Similarity=0.175  Sum_probs=81.6

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh-------CCceecCchHHHHHhCC---CChHHHHHhhc-----------hhHh
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL-------RYYYFDSDSLVFEAAGG---ESAAKAFRESD-----------EKGY  149 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L-------g~~~iD~D~li~~~~g~---~~i~ei~~~~g-----------e~~f  149 (278)
                      .+|+.|+|.|++||||||+++.|++.|       |+.++-+    ++..+.   ..+.+++....           ...+
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~   98 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----REPGGTRLGETLREILLNQPMDLETEALLMFAGRR   98 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cCCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            468999999999999999999999998       4443311    000000   01122221100           0111


Q ss_pred             HHHHHHHHHHHHcCCCEEEEeCC----------ceeechhHHH-----h---hhCCcEEEEEcCHHHHHhh-hcCC---C
Q 023749          150 QQAETEVLKQLSSMGRLVVCAGN----------GAVQSSANLA-----L---LRHGISLWIDVPPGMVARM-DHSG---F  207 (278)
Q Consensus       150 r~~e~~vl~~l~~~~~~VI~~g~----------g~v~~~~~~~-----~---L~~~~vV~L~a~~e~l~~R-~~r~---r  207 (278)
                      ...+. .+......+..||+...          +--.+.+...     .   ++++++|||++|++++.+| .+|+   +
T Consensus        99 ~~~~~-~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~dr  177 (227)
T 3v9p_A           99 EHLAL-VIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPDK  177 (227)
T ss_dssp             HHHHH-THHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC--
T ss_pred             HHHHH-HHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCccc
Confidence            11111 12222334667776531          0001111111     1   1268999999999999999 5553   2


Q ss_pred             CCCChHH---HHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          208 PESEVLP---QLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       208 p~~~~~~---~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                      .+.+..+   .+.+.|.+....|...-++||             .+.++|++.++|.+.+..
T Consensus       178 ~E~~~~ef~~rv~~~Y~~la~~~~~~~~vID-------------a~~s~eeV~~~I~~~l~~  226 (227)
T 3v9p_A          178 FESESDAFFARTRAEYLRRAQEAPHRFVIVD-------------SSEPIAQIRKQLEGVLAA  226 (227)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHCTTTEEEEE-------------TTSCHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhcCCEEEEe-------------CCCCHHHHHHHHHHHHHh
Confidence            2221123   333344443332322345777             358999999999998864

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.16  E-value=8.9e-11  Score=115.28  Aligned_cols=111  Identities=21%  Similarity=0.183  Sum_probs=68.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCcee-----cCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHH------
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-----DSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQL------  160 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i-----D~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l------  160 (278)
                      .+.+|+++|+|||||||+|+.|++.|++.++     +.|+++++..+.....++|...+++.|+..+..+...+      
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~~  113 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSY  113 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            3568999999999999999999999977664     55898888877333456777777777765444322211      


Q ss_pred             H--cCCCEEE-Ee-CCceeechhHHHhhh-CCc---EEEEEcC-HHHHHhh
Q 023749          161 S--SMGRLVV-CA-GNGAVQSSANLALLR-HGI---SLWIDVP-PGMVARM  202 (278)
Q Consensus       161 ~--~~~~~VI-~~-g~g~v~~~~~~~~L~-~~~---vV~L~a~-~e~l~~R  202 (278)
                      .  ..+..|| ++ +.+.......++.++ .+.   .|++.|+ ++.+.+|
T Consensus       114 L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~r  164 (520)
T 2axn_A          114 LAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASN  164 (520)
T ss_dssp             HHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHH
T ss_pred             HHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHH
Confidence            1  2344455 32 222222222333343 342   4555566 6666676

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=99.12  E-value=2.4e-09  Score=92.15  Aligned_cols=160  Identities=16%  Similarity=0.081  Sum_probs=81.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHh---CCceecC----c-hH---HHHHh--CCCCh-HHHHHhhchhHhHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYFDS----D-SL---VFEAA--GGESA-AKAFRESDEKGYQQAETEVLKQ  159 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD~----D-~l---i~~~~--g~~~i-~ei~~~~ge~~fr~~e~~vl~~  159 (278)
                      +.|+|.|+.||||||+++.|++.|   |++++-+    + .+   +.+..  +..+. .+.+-- - ....+.... +..
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~-~-a~r~~~~~~-I~~   77 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLF-L-ASRNLLVTE-IKQ   77 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHH-H-HHHHHHHHH-HHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHH-H-HHHHHHHHH-HHH
Confidence            468999999999999999999987   6665432    1 11   11110  00110 000000 0 000111112 222


Q ss_pred             HHcCCCEEEEeCC----------ceeechhHHHh--------hhCCcEEEEEcCHHHHHhh-hcCCCCCC-ChHHHHHHH
Q 023749          160 LSSMGRLVVCAGN----------GAVQSSANLAL--------LRHGISLWIDVPPGMVARM-DHSGFPES-EVLPQLFAL  219 (278)
Q Consensus       160 l~~~~~~VI~~g~----------g~v~~~~~~~~--------L~~~~vV~L~a~~e~l~~R-~~r~rp~~-~~~~~l~~~  219 (278)
                      ....+.+||+...          +.-........        +.++++|||++|+++..+| ..++|-.. +..+.+++.
T Consensus        78 ~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~e~~ef~~rv~~~  157 (197)
T 3hjn_A           78 YLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKREFLERVREG  157 (197)
T ss_dssp             HHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTTCCHHHHHHHHHH
T ss_pred             HHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCccccHHHHHHHHHH
Confidence            2345667776531          00011111111        1268999999999999999 54444322 222334444


Q ss_pred             HHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749          220 YKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS  269 (278)
Q Consensus       220 ~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~  269 (278)
                      |.+....+..-=.+||             .+.++|++.++|.+.+.+.++
T Consensus       158 y~~la~~~~~~~~~ID-------------a~~~~eeV~~~I~~~i~~rl~  194 (197)
T 3hjn_A          158 YLVLAREHPERIVVLD-------------GKRSIEEIHRDVVREVKRRWK  194 (197)
T ss_dssp             HHHHHHHCTTTEEEEE-------------TTSCHHHHHHHHHHHHSCC--
T ss_pred             HHHHHHhCCCCEEEEc-------------CCCCHHHHHHHHHHHHHHHhC
Confidence            4443222211124566             458999999999999987653

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.11  E-value=2.9e-10  Score=100.93  Aligned_cols=106  Identities=18%  Similarity=0.215  Sum_probs=67.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC--CceecCchHH---------HHHhCCCChHHHHHhhchhHhHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLV---------FEAAGGESAAKAFRESDEKGYQQAETEVLKQL  160 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg--~~~iD~D~li---------~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l  160 (278)
                      .++.|+|+|+|||||||+|+.|++.++  +.++|.|.+.         ....| ..+.+++..    .+......++..+
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g-~~~~~~~~~----~~~~~~~~~~~~~  105 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYG-KDSVEYTKD----FAGKMVESLVTKL  105 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCS-STTHHHHHH----HHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcC-chHHHHhhH----HHHHHHHHHHHHH
Confidence            477899999999999999999999997  6788998873         22334 444443332    1222333445555


Q ss_pred             HcC-CCEEEEeCCcee-echhHHHhhh-CCc---EEEEEcCHHHHHhh
Q 023749          161 SSM-GRLVVCAGNGAV-QSSANLALLR-HGI---SLWIDVPPGMVARM  202 (278)
Q Consensus       161 ~~~-~~~VI~~g~g~v-~~~~~~~~L~-~~~---vV~L~a~~e~l~~R  202 (278)
                      ... .++|++.+.+.. ........++ .+.   ++|+++|++++.+|
T Consensus       106 ~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R  153 (253)
T 2p5t_B          106 SSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLS  153 (253)
T ss_dssp             HHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHH
T ss_pred             HhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHH
Confidence            544 466776443322 2233344454 453   56889999999988

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=99.09  E-value=1.3e-10  Score=102.48  Aligned_cols=157  Identities=15%  Similarity=0.113  Sum_probs=75.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCC----ceec-C----chHHHHHhCCCChHHHHHhh------chh-HhHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRY----YYFD-S----DSLVFEAAGGESAAKAFRES------DEK-GYQQAETE  155 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~----~~iD-~----D~li~~~~g~~~i~ei~~~~------ge~-~fr~~e~~  155 (278)
                      +|+.|+|.|++||||||+++.|++.|+.    .++. +    +.-+-+     .+.+++...      -+. .|..-..+
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~-----~ir~~l~~~~~~~~~~e~llf~a~R~~   94 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNE-----SVRNLLFKAQGLDSLSELLFFIAMRRE   94 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHH-----HHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHH-----HHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence            5889999999999999999999998765    3322 1    111100     011111110      000 12111111


Q ss_pred             H----HHHHHcCCCEEEEeCC----------ceeechhHHH-----h--hhCCcEEEEEcCHHHHHhhhcCCCCCC---C
Q 023749          156 V----LKQLSSMGRLVVCAGN----------GAVQSSANLA-----L--LRHGISLWIDVPPGMVARMDHSGFPES---E  211 (278)
Q Consensus       156 v----l~~l~~~~~~VI~~g~----------g~v~~~~~~~-----~--L~~~~vV~L~a~~e~l~~R~~r~rp~~---~  211 (278)
                      .    +......+..||+...          +--.+.+...     .  .+++++|||++|+++..+|.+++|.+.   +
T Consensus        95 ~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri~rdr~E~~~~e  174 (223)
T 3ld9_A           95 HFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRSCKNGYEFADME  174 (223)
T ss_dssp             HHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC----------------CHH
T ss_pred             HHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHhccCccccchHH
Confidence            1    2222334667776531          0001111111     1  137899999999999999942333322   2


Q ss_pred             hHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          212 VLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       212 ~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                      ..+.+++.|.+....|....++||.             +.++|++ ++|.+.+.+.
T Consensus       175 ~~~rv~~~y~~la~~~~~~~~vIDa-------------~~sieeV-~~I~~~l~~~  216 (223)
T 3ld9_A          175 FYYRVRDGFYDIAKKNPHRCHVITD-------------KSETYDI-DDINFVHLEV  216 (223)
T ss_dssp             HHHHHHHHHHHHHHHCTTTEEEEES-------------SCSSSCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEcC-------------CCCHHHH-HHHHHHHHHH
Confidence            3344555666655444335678884             4677777 7777776643

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=99.05  E-value=1e-09  Score=95.84  Aligned_cols=158  Identities=16%  Similarity=0.192  Sum_probs=84.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh---CC-ceecC----chHHHHHhCCCChHHHHHhh--------ch--h--HhHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RY-YYFDS----DSLVFEAAGGESAAKAFRES--------DE--K--GYQQ  151 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~-~~iD~----D~li~~~~g~~~i~ei~~~~--------ge--~--~fr~  151 (278)
                      +|+.|+|.|++||||||+++.|++.|   |+ .++-+    +.-+    | ..+.+++...        ..  +  .|..
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~----g-~~ir~~l~~~~~~~~~~~~~~~e~lL~~A   76 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQL----A-EKLRSLLLDIKSVGDEVITDKAEVLMFYA   76 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHH----H-HHHHHHHHSTTTTTTCCCCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHH----H-HHHHHHHhcccccccccCChHHHHHHHHH
Confidence            58999999999999999999999988   44 22111    1111    0 0111222100        00  0  1111


Q ss_pred             HHHH----HHHHHHcCCCEEEEeCC----------ceeechhHH---H--h---hhCCcEEEEEcCHHHHHhh-hcCCC-
Q 023749          152 AETE----VLKQLSSMGRLVVCAGN----------GAVQSSANL---A--L---LRHGISLWIDVPPGMVARM-DHSGF-  207 (278)
Q Consensus       152 ~e~~----vl~~l~~~~~~VI~~g~----------g~v~~~~~~---~--~---L~~~~vV~L~a~~e~l~~R-~~r~r-  207 (278)
                      ...+    ++......+.+||+...          +--.+....   +  .   ++++++|||++|+++..+| .+|+. 
T Consensus        77 ~R~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~  156 (213)
T 4tmk_A           77 ARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGEL  156 (213)
T ss_dssp             HHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence            1111    12222345667777531          100111111   1  1   1268999999999999999 44432 


Q ss_pred             --CCCChHHH---HHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          208 --PESEVLPQ---LFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       208 --p~~~~~~~---l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                        .+.+..+.   +...|.+....+ ..-.+||             .+.++|++.++|.+.+.+.+
T Consensus       157 dr~E~~~~~f~~rv~~~y~~la~~~-~~~~vID-------------a~~s~eeV~~~I~~~l~~~l  208 (213)
T 4tmk_A          157 DRIEQESFDFFNRTRARYLELAAQD-KSIHTID-------------ATQPLEAVMDAIRTTVTHWV  208 (213)
T ss_dssp             CTTTTSCHHHHHHHHHHHHHHHHTC-TTEEEEE-------------TTSCHHHHHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHC-CcEEEEC-------------CCCCHHHHHHHHHHHHHHHH
Confidence              22222333   333444332211 1235666             46899999999999998765

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.04  E-value=6e-09  Score=88.10  Aligned_cols=66  Identities=12%  Similarity=0.061  Sum_probs=45.9

Q ss_pred             CcEEEEEc-CHHHHHhh-hcCCCCC-CChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHH
Q 023749          187 GISLWIDV-PPGMVARM-DHSGFPE-SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWL  263 (278)
Q Consensus       187 ~~vV~L~a-~~e~l~~R-~~r~rp~-~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~  263 (278)
                      ..+||+.. |++++.+| ..|++.. +.....+...+.+ ...+..+|++|+|             + +++++.+++.++
T Consensus       119 ~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~-~~~~~~~d~vi~n-------------~-~~~~~~~~l~~~  183 (205)
T 3tr0_A          119 ALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREE-MAHYKEFDYLVVN-------------D-NFDQAVQNLIHI  183 (205)
T ss_dssp             CEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHH-HTTGGGCSEEEEC-------------S-SHHHHHHHHHHH
T ss_pred             cEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HhcccCCCEEEEC-------------C-CHHHHHHHHHHH
Confidence            35677776 58999999 6665543 3445566665444 2344579999984             2 899999999999


Q ss_pred             hhhc
Q 023749          264 YNAS  267 (278)
Q Consensus       264 i~~~  267 (278)
                      +.++
T Consensus       184 i~~~  187 (205)
T 3tr0_A          184 ISAE  187 (205)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.02  E-value=1.3e-09  Score=104.02  Aligned_cols=126  Identities=16%  Similarity=0.108  Sum_probs=75.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG  171 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g  171 (278)
                      .+..|+|+|+|||||||+|+.|++.+|+.+++.|.+     +  .            |+.+...+...+.....+|+++.
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~-----~--~------------~~~~~~~~~~~l~~g~~vIiD~~  317 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-----G--S------------WQRCVSSCQAALRQGKRVVIDNT  317 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS-----C--S------------HHHHHHHHHHHHHTTCCEEEESC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH-----H--H------------HHHHHHHHHHHHhcCCcEEEeCC
Confidence            567999999999999999999999999999999886     1  1            12222233334444555666543


Q ss_pred             Cceeec-hhHHHhhh-CC---cEEEEEcCHHHHHhh-hcCCC---CC-CChHHHHHHHHHHhhhccc--cCcEEEec
Q 023749          172 NGAVQS-SANLALLR-HG---ISLWIDVPPGMVARM-DHSGF---PE-SEVLPQLFALYKEMRDGYA--TADVTVSL  236 (278)
Q Consensus       172 ~g~v~~-~~~~~~L~-~~---~vV~L~a~~e~l~~R-~~r~r---p~-~~~~~~l~~~~~er~~~Y~--~AD~vId~  236 (278)
                      ...... ...++.++ .+   .+|||++|.+++.+| ..|.+   .. ....+.+..++..+++.-.  .-|.++..
T Consensus       318 ~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~P~~~E~fd~v~~v  394 (416)
T 3zvl_A          318 NPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTLAEGFLEILEI  394 (416)
T ss_dssp             CCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCCCGGGTCSEEEEE
T ss_pred             CCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhcCCCCcccCCcEEEEE
Confidence            221111 11122232 22   689999999999999 33321   11 1123445555555444322  35666653

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=99.01  E-value=2.1e-09  Score=93.90  Aligned_cols=70  Identities=10%  Similarity=0.162  Sum_probs=36.6

Q ss_pred             CCcEEEEEcCHHHHHhh-hcCCCCCC-----ChHHHHHHHHHHhhhcc--c-cCc-EEEecCcccccccccCCCCCCHHH
Q 023749          186 HGISLWIDVPPGMVARM-DHSGFPES-----EVLPQLFALYKEMRDGY--A-TAD-VTVSLQKVASQLGYDDLDAVTTED  255 (278)
Q Consensus       186 ~~~vV~L~a~~e~l~~R-~~r~rp~~-----~~~~~l~~~~~er~~~Y--~-~AD-~vId~~~va~~~~~~Dts~~tpee  255 (278)
                      .+++|||++|++++.+| ..|+|+.+     +..+.++..|.++...|  . .++ ++||.             +.++|+
T Consensus       147 pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~-------------~~~~ee  213 (230)
T 2vp4_A          147 ADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDA-------------DLNLEN  213 (230)
T ss_dssp             CSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEEC-------------CC----
T ss_pred             CCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEEC-------------CCCHHH
Confidence            67899999999999999 65666522     23456777787765444  2 344 67873             579999


Q ss_pred             HHHHHHHHhhhcC
Q 023749          256 MTLEVKWLYNASI  268 (278)
Q Consensus       256 va~~I~~~i~~~~  268 (278)
                      +.++|.+.+...+
T Consensus       214 v~~~I~~~l~~~~  226 (230)
T 2vp4_A          214 IGTEYQRSESSIF  226 (230)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887544

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.99  E-value=2.1e-10  Score=102.16  Aligned_cols=108  Identities=9%  Similarity=0.003  Sum_probs=64.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH--H-hCC-CC--------------hHHHHH-hhchhHhHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE--A-AGG-ES--------------AAKAFR-ESDEKGYQQAET  154 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~--~-~g~-~~--------------i~ei~~-~~ge~~fr~~e~  154 (278)
                      +.|+|+|++||||||+|+.||+.+|+++++.|.+...  . .+. ..              ..+... ..+...|++...
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~   81 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI   81 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence            4789999999999999999999999999999987421  1 000 00              000111 234455666555


Q ss_pred             HHHHHHHcCCCEEEEeCCceeechhHHHh--hhCC---cEEEEEcCH-HHHHhh
Q 023749          155 EVLKQLSSMGRLVVCAGNGAVQSSANLAL--LRHG---ISLWIDVPP-GMVARM  202 (278)
Q Consensus       155 ~vl~~l~~~~~~VI~~g~g~v~~~~~~~~--L~~~---~vV~L~a~~-e~l~~R  202 (278)
                      ..+ ++...+..+|.+|+...........  +..+   .+|||++|. +++.+|
T Consensus        82 ~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~R  134 (253)
T 2ze6_A           82 FEV-DWRKSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTR  134 (253)
T ss_dssp             HHH-HTTTTSSEEEEEECCHHHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHH
T ss_pred             HHH-HHHhCCCCeEEeccHHHHHHHHHhcccccccCceEEEEecchhHHHHHHH
Confidence            555 5544444455444322111111111  0012   689999997 999998

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=98.99  E-value=2.5e-09  Score=93.77  Aligned_cols=161  Identities=11%  Similarity=0.102  Sum_probs=86.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCce--ec---CchHHHHHhCCCChHHHHHhhc-------hh-HhHHHHHH---
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYY--FD---SDSLVFEAAGGESAAKAFRESD-------EK-GYQQAETE---  155 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~--iD---~D~li~~~~g~~~i~ei~~~~g-------e~-~fr~~e~~---  155 (278)
                      +|+.|+|.|++||||||+++.|++.|+...  +.   .+.-+    | ..+.+++....       +. .|.....+   
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~~----g-~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~   78 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRI----G-GLINEYLTDDSFQLSDQAIHLLFSANRWEIVD   78 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSHH----H-HHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCChH----H-HHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            588999999999999999999999998632  11   01111    0 01112221100       00 11111111   


Q ss_pred             HHHHHHcCCCEEEEeCCc---ee------ech---hHHHhh-----hCCcEEEE-EcCHHHHHhh-hcC-CCCCC-ChHH
Q 023749          156 VLKQLSSMGRLVVCAGNG---AV------QSS---ANLALL-----RHGISLWI-DVPPGMVARM-DHS-GFPES-EVLP  214 (278)
Q Consensus       156 vl~~l~~~~~~VI~~g~g---~v------~~~---~~~~~L-----~~~~vV~L-~a~~e~l~~R-~~r-~rp~~-~~~~  214 (278)
                      .+......+.+||+...-   .+      .+.   .....+     +++++||| ++|+++..+| .++ .|.+. +..+
T Consensus        79 ~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~dr~E~~~f~~  158 (216)
T 3tmk_A           79 KIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQE  158 (216)
T ss_dssp             HHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSCCTTCCHHHHH
T ss_pred             HHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCcccccHHHHHH
Confidence            122222346677765310   00      000   111111     26899999 9999999999 433 23221 1223


Q ss_pred             HHHHHHHHhhhc---cc-cCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749          215 QLFALYKEMRDG---YA-TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS  269 (278)
Q Consensus       215 ~l~~~~~er~~~---Y~-~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~  269 (278)
                      .+++.|.+....   |. ..-.+||            +.+.++|+|.++|.+.+.+.++
T Consensus       159 rvr~~Y~~la~~~~~~~~~~~~vID------------~a~~s~eeV~~~I~~~i~~~l~  205 (216)
T 3tmk_A          159 KVKQTFMKLLDKEIRKGDESITIVD------------VTNKGIQEVEALIWQIVEPVLS  205 (216)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSEEEEE------------CTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCCEEEEe------------CCCCCHHHHHHHHHHHHHHHHh
Confidence            334444444332   11 1224555            5679999999999999987764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.98  E-value=7.5e-09  Score=93.97  Aligned_cols=108  Identities=15%  Similarity=0.132  Sum_probs=64.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh--CCceecCchHHHHHhCCCChHHHHHhhc-------hhHhHHHHHHHHHHHH-
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEAAGGESAAKAFRESD-------EKGYQQAETEVLKQLS-  161 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L--g~~~iD~D~li~~~~g~~~i~ei~~~~g-------e~~fr~~e~~vl~~l~-  161 (278)
                      .++.|+|+|+|||||||+++.|++.+  ++.+++.|.+.....+   ..++....+       ..++..+....+..+. 
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~  108 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPN---FDELVKLYEKDVVKHVTPYSNRMTEAIISRLSD  108 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchh---hHHHHHHccchhhhhhhHHHHHHHHHHHHHHHh
Confidence            47789999999999999999999999  8899999887543221   111111111       1233443334444444 


Q ss_pred             cCCCEEEEeCCceee-chhHHHhhh-CC---cEEEEEcCHHHH----Hhh
Q 023749          162 SMGRLVVCAGNGAVQ-SSANLALLR-HG---ISLWIDVPPGMV----ARM  202 (278)
Q Consensus       162 ~~~~~VI~~g~g~v~-~~~~~~~L~-~~---~vV~L~a~~e~l----~~R  202 (278)
                      ...++|++....... ....++.++ .+   .++++.+|++++    .+|
T Consensus       109 ~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~R  158 (287)
T 1gvn_B          109 QGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIER  158 (287)
T ss_dssp             HTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHH
Confidence            345555543221111 112223343 33   368999999999    777

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=98.92  E-value=2.5e-08  Score=87.33  Aligned_cols=30  Identities=13%  Similarity=0.101  Sum_probs=26.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh-CCce
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYY  121 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L-g~~~  121 (278)
                      +|+.|+|.|++||||||+++.|++.+ ++.+
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~   31 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence            47889999999999999999999999 5544

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.91  E-value=1.1e-09  Score=105.86  Aligned_cols=109  Identities=18%  Similarity=0.241  Sum_probs=67.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCch-----HHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHH-----
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS-----LVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLS-----  161 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~-----li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~-----  161 (278)
                      ++.+|+|+|+|||||||+|+.|++.+++.++++|.     +.++..|.....++|...|++.++..+..++..+.     
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~  117 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF  117 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            45689999999999999999999999887777665     55666652133467777787666655544332221     


Q ss_pred             ---cCCCEEEEeCCceeechhHHH----hhh-CC-cEEEEE---cCHHHHHhh
Q 023749          162 ---SMGRLVVCAGNGAVQSSANLA----LLR-HG-ISLWID---VPPGMVARM  202 (278)
Q Consensus       162 ---~~~~~VI~~g~g~v~~~~~~~----~L~-~~-~vV~L~---a~~e~l~~R  202 (278)
                         ..+..+|.....  .....++    .++ .+ .++||+   .+++.+.+|
T Consensus       118 l~~~~G~~vV~D~tn--~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r  168 (469)
T 1bif_A          118 LSEEGGHVAVFDATN--TTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAAN  168 (469)
T ss_dssp             HHTTCCSEEEEESCC--CSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHH
T ss_pred             HHhCCCCEEEEeCCC--CCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHH
Confidence               122223322211  1122222    233 34 578888   567888777

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.91  E-value=1.2e-08  Score=87.02  Aligned_cols=38  Identities=24%  Similarity=0.130  Sum_probs=33.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC--CceecCchHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLVF  129 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg--~~~iD~D~li~  129 (278)
                      +|..|.|+|++||||||+++.|+..++  +.+++.|..+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~   44 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK   44 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence            577899999999999999999999988  88998887653

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=98.89  E-value=7.3e-09  Score=101.55  Aligned_cols=35  Identities=17%  Similarity=0.215  Sum_probs=32.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCC-------ceecCch
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRY-------YYFDSDS  126 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~-------~~iD~D~  126 (278)
                      .+.+|+|+|++||||||+|+.||++|+.       .++|.|.
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            5689999999999999999999999997       6889887

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.85  E-value=3.6e-09  Score=91.07  Aligned_cols=66  Identities=17%  Similarity=0.160  Sum_probs=38.9

Q ss_pred             CcEEEEEcC-HHHHHhh-hcCCCCC-CChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHH
Q 023749          187 GISLWIDVP-PGMVARM-DHSGFPE-SEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWL  263 (278)
Q Consensus       187 ~~vV~L~a~-~e~l~~R-~~r~rp~-~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~  263 (278)
                      ..+||+..| .+++.+| ..|+... ++....+.....+. ..+..+|++|.|              -+.++++++|.++
T Consensus       121 ~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~-~~~~~~d~vivN--------------~~~~~~~~~l~~~  185 (208)
T 3tau_A          121 GIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEI-EMMASYDYAVVN--------------DVVANAVQKIKGI  185 (208)
T ss_dssp             SEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHHHH-HHGGGSSEEEEC--------------SSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HhhccCCEEEEC--------------cCHHHHHHHHHHH
Confidence            467888866 8888888 6665432 22334444443332 223468998874              2599999999998


Q ss_pred             hhhc
Q 023749          264 YNAS  267 (278)
Q Consensus       264 i~~~  267 (278)
                      +.+.
T Consensus       186 i~~~  189 (208)
T 3tau_A          186 VETE  189 (208)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8653

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.82  E-value=1.6e-08  Score=85.42  Aligned_cols=26  Identities=23%  Similarity=0.218  Sum_probs=24.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..|+|+|++||||||+++.|++.+
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            58899999999999999999999865

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.78  E-value=1.8e-08  Score=88.64  Aligned_cols=29  Identities=10%  Similarity=0.014  Sum_probs=26.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      +|..|.|+|++||||||+++.|+..+|..
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            57789999999999999999999988876

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=98.77  E-value=6.7e-09  Score=94.55  Aligned_cols=38  Identities=13%  Similarity=0.151  Sum_probs=30.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF  129 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li~  129 (278)
                      ++..|.|+|++||||||+++.|++.+|     ++++|+|++..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            356899999999999999999999888     78999999763

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.75  E-value=1.2e-08  Score=95.30  Aligned_cols=99  Identities=14%  Similarity=0.141  Sum_probs=63.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchH--HHHH------------hCCC-----ChHHHHHhhchhHhHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFEA------------AGGE-----SAAKAFRESDEKGYQQAET  154 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l--i~~~------------~g~~-----~i~ei~~~~ge~~fr~~e~  154 (278)
                      +.|+|+|++||||||+|+.||+.++..+++.|.+  ....            .+ .     ++.+.....+...|.....
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~-v~hhl~di~~~~~~~~~~dF~~~a~   86 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEG-IPHYMIDILPPDASFSAYEFKKRAE   86 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTT-CCEESSSCBCTTSCCCHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHH-HHHHHHHHhCCccccCHHHHHHHHH
Confidence            5899999999999999999999999999999987  2211            11 1     0111112234455766666


Q ss_pred             HHHHHHHcCCCEEEEeCCceeechhHHHhhhCCcEEEEE-cCHH
Q 023749          155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWID-VPPG  197 (278)
Q Consensus       155 ~vl~~l~~~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~-a~~e  197 (278)
                      ..+..+...+..+|.+||..+..    +.+..++.+|.+ ++++
T Consensus        87 ~~i~~i~~~g~~~IlvGGt~ly~----~~l~~~l~~~~~~~d~~  126 (340)
T 3d3q_A           87 KYIKDITRRGKVPIIAGGTGLYI----QSLLYNYAFEDESISED  126 (340)
T ss_dssp             HHHHHHHHTTCEEEEECCCHHHH----HHHHBCSCCC---CCHH
T ss_pred             HHHHHHHhCCCcEEEECChhhhH----HHHHhcccccCCCCChH
Confidence            66667665666777777654332    223344557888 8888

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.74  E-value=4.6e-09  Score=97.42  Aligned_cols=80  Identities=23%  Similarity=0.294  Sum_probs=60.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC--------------------hHHHHHhhchhHhHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES--------------------AAKAFRESDEKGYQQA  152 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~--------------------i~ei~~~~ge~~fr~~  152 (278)
                      ++.|+|+|++||||||+|+.||+++|+.+++.|.+.... | ++                    +.+.+..++...|++.
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~-~-~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~   82 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYR-G-MDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRAD   82 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBT-T-CCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhc-C-CCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHH
Confidence            458999999999999999999999999999999864211 1 11                    1223344566778888


Q ss_pred             HHHHHHHHHcCCCEEEEeCCce
Q 023749          153 ETEVLKQLSSMGRLVVCAGNGA  174 (278)
Q Consensus       153 e~~vl~~l~~~~~~VI~~g~g~  174 (278)
                      +..++.++...+..+|.+||+.
T Consensus        83 a~~~i~~i~~~g~~~IlvGGt~  104 (323)
T 3crm_A           83 ALAAMAKATARGRIPLLVGGTM  104 (323)
T ss_dssp             HHHHHHHHHHTTCEEEEEESCH
T ss_pred             HHHHHHHHHHcCCeEEEECCch
Confidence            8888888887777788887653

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.68  E-value=2.8e-08  Score=85.17  Aligned_cols=36  Identities=28%  Similarity=0.179  Sum_probs=29.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSL  127 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~l  127 (278)
                      +|..|.|+|++||||||+++.|+..+.     ..++..|..
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~   61 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF   61 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence            578999999999999999999999874     445665553

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.61  E-value=4.2e-08  Score=82.31  Aligned_cols=27  Identities=15%  Similarity=0.222  Sum_probs=25.1

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ++|+.|+|+|++||||||+++.|+..+
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            678999999999999999999999865

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=98.58  E-value=6.5e-09  Score=97.61  Aligned_cols=61  Identities=15%  Similarity=0.102  Sum_probs=55.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCce--------------------ecCchHHHHHhCCCChHHHHHhhchhHhHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYY--------------------FDSDSLVFEAAGGESAAKAFRESDEKGYQQAE  153 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~--------------------iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e  153 (278)
                      ..|+|+|++||||||+++.||+.++++|                    +|+|..+++..| +++.++|...|+ .|+..|
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g-~~i~~if~~~ge-~fr~~E  102 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQP-NKVAEMIENQGL-FKDHVE  102 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCH-HHHHHHHHTTTC-CGGGTT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhC-ccHHHHHHHhcc-cchHHH
Confidence            3599999999999999999999999999                    999999988887 889999999998 999887


Q ss_pred             HHH
Q 023749          154 TEV  156 (278)
Q Consensus       154 ~~v  156 (278)
                      ...
T Consensus       103 ~~~  105 (359)
T 2ga8_A          103 DVN  105 (359)
T ss_dssp             CTT
T ss_pred             hhh
Confidence            643

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.58  E-value=5.2e-08  Score=83.18  Aligned_cols=37  Identities=22%  Similarity=0.233  Sum_probs=29.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCchHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLV  128 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~li  128 (278)
                      .+..|.|+|++||||||+++.|+..+   |..  +++.|.+.
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~   62 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI   62 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence            46789999999999999999999876   544  34556543

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=98.54  E-value=9.1e-09  Score=87.53  Aligned_cols=26  Identities=27%  Similarity=0.272  Sum_probs=23.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      +.|+|+|++||||||+++.|++.++.
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            47999999999999999999999853

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=98.53  E-value=1e-07  Score=84.92  Aligned_cols=36  Identities=14%  Similarity=0.231  Sum_probs=31.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF  129 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~  129 (278)
                      +.|.|+|++||||||+++.|++.+|++++.....+.
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~   37 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIK   37 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHH
Confidence            479999999999999999999989999988766543

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=98.42  E-value=3.9e-06  Score=72.80  Aligned_cols=151  Identities=7%  Similarity=0.021  Sum_probs=79.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC---CceecCchHHHH-Hh---CCCChHHHHH-hhchhHhHH--------HHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLVFE-AA---GGESAAKAFR-ESDEKGYQQ--------AETE  155 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg---~~~iD~D~li~~-~~---g~~~i~ei~~-~~ge~~fr~--------~e~~  155 (278)
                      ..++|+|+|++||||+|+|+.|.+.+|   ++.+...+.+++ ..   | ....+.+. ..-.+.+|.        +...
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~g-l~~~~~l~~~~ykE~~R~~m~~~g~~~R~~   88 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHG-LNFQRLLDTSTYKEAFRKDMIRWGEEKRQA   88 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTT-CCCC-------CCSSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcC-CCchhhcchhhhHHHHHHHHHHHHHHHHhc
Confidence            345788999999999999999988885   677888776664 21   2 22222210 000011111        1000


Q ss_pred             ---HHHHHH-c--CCCEEEEeCCceeechhHHHhhh-C--C--cEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHh
Q 023749          156 ---VLKQLS-S--MGRLVVCAGNGAVQSSANLALLR-H--G--ISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEM  223 (278)
Q Consensus       156 ---vl~~l~-~--~~~~VI~~g~g~v~~~~~~~~L~-~--~--~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er  223 (278)
                         +...++ .  ....+|.+|   +-.....++++ .  .  .+|.+.++++++.+| -.+....++.  ..+  + .-
T Consensus        89 d~~~~~~~~~~~~~~~~vII~d---vR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~~~~Dd~--esE--~-gL  160 (202)
T 3ch4_B           89 DPGFFCRKIVEGISQPIWLVSD---TRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTPGVDDA--ESE--C-GL  160 (202)
T ss_dssp             CTTTTHHHHSBTCCCSEEEECC---CCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCCTTTTTS--HHH--H-TT
T ss_pred             CchHHHHHHHHhcCCCcEEEeC---CCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhcccccccc--ccc--c-CC
Confidence               001111 1  122344333   22344455554 1  2  469999999999999 2222211111  111  1 11


Q ss_pred             hhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749          224 RDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN  265 (278)
Q Consensus       224 ~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~  265 (278)
                      ... ..+|++|.|             +.|.+++..++.+++.
T Consensus       161 ~~~-~~~D~vI~N-------------dgt~eel~~~v~~ll~  188 (202)
T 3ch4_B          161 DNF-GDFDWVIEN-------------HGVEQRLEEQLENLIE  188 (202)
T ss_dssp             TTC-CCCSEEEEE-------------CSCHHHHHHHHHHHHH
T ss_pred             CCC-CcCCEEEEe-------------CCCHHHHHHHHHHHHH
Confidence            222 469999986             3488877777655543

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.42  E-value=6.3e-07  Score=77.72  Aligned_cols=64  Identities=14%  Similarity=0.064  Sum_probs=36.7

Q ss_pred             cEEEEEc-CHHHHHhh-hcCCCC-CCChHHHHHHHHHHhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749          188 ISLWIDV-PPGMVARM-DHSGFP-ESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       188 ~vV~L~a-~~e~l~~R-~~r~rp-~~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i  264 (278)
                      ..||+.. +.+++.+| ..|+.. .++....+..++.+.. .+..+|++|+|            +  +++++.+++.+++
T Consensus       142 ~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~-~~~~~d~vI~n------------~--~~e~~~~~l~~~i  206 (231)
T 3lnc_A          142 VSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEIS-HCEAYDYVIVN------------E--DIEETADRISNIL  206 (231)
T ss_dssp             EEEEEECSCHHHHHHC--------------CHHHHHHHHT-TGGGSSEEEEC------------S--SHHHHHHHHHHHH
T ss_pred             EEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh-hhcCCeEEEEC------------c--CHHHHHHHHHHHH
Confidence            4676655 78888888 555432 2333445555554432 23469999984            2  6999999999888


Q ss_pred             hh
Q 023749          265 NA  266 (278)
Q Consensus       265 ~~  266 (278)
                      ..
T Consensus       207 ~~  208 (231)
T 3lnc_A          207 RA  208 (231)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.41  E-value=6.2e-07  Score=81.83  Aligned_cols=37  Identities=14%  Similarity=0.094  Sum_probs=30.8

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhC-------CceecCchH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSL  127 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg-------~~~iD~D~l  127 (278)
                      -.|..|.|+|++||||||+++.|+..++       +.++++|..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            3577999999999999999999999876       556666654

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.32  E-value=1.1e-06  Score=75.22  Aligned_cols=24  Identities=21%  Similarity=0.170  Sum_probs=21.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHh
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +.|+|+||+||||||+.+.|.+.+
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            458999999999999999998875

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.27  E-value=1.8e-06  Score=79.82  Aligned_cols=50  Identities=10%  Similarity=0.052  Sum_probs=35.6

Q ss_pred             HHHHHHHHhhhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhC-------CceecCchH
Q 023749           78 FAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSL  127 (278)
Q Consensus        78 ~~~~~~~~~~~~~~---~~~~I~L~G~~GSGKSTlAk~LAe~Lg-------~~~iD~D~l  127 (278)
                      ..++.....|.+.-   .+..|.|+|++||||||+++.|+..++       ..+++.|.+
T Consensus        74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f  133 (321)
T 3tqc_A           74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF  133 (321)
T ss_dssp             HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence            34455555555543   233899999999999999999998875       334666664

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.13  E-value=8.5e-07  Score=87.26  Aligned_cols=77  Identities=23%  Similarity=0.163  Sum_probs=58.5

Q ss_pred             cccCCCcceecccccCCcccccccccc-----------CCcc----HHHHHHHHhhh------hccCCcEEEEEccCCCc
Q 023749           47 IISRKPRITTRSIADDTTSNTVTKVAA-----------EDPS----FAVKKKAADIS------TELKGTSVFLVGMNNAI  105 (278)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~----~~~~~~~~~~~------~~~~~~~I~L~G~~GSG  105 (278)
                      ...++++.+.++|.+|.+.+||+....           +|++    ..++++..+..      ..+.|..++|+|+||+|
T Consensus        41 ~~~~~e~~~~~~~l~~~~~lp~~~~~~~~~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtG  120 (543)
T 3m6a_A           41 PSSSAESSVIRNYIDWLVALPWTDETDDKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVG  120 (543)
T ss_dssp             SSSCTTTTHHHHHHHHHHHSCSSCCCCCCCCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSS
T ss_pred             CCCCchHhHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCC
Confidence            346779999999999999999976552           1221    34555543332      45578999999999999


Q ss_pred             HHHHHHHHHHHhCCceec
Q 023749          106 KTHLGKFLADALRYYYFD  123 (278)
Q Consensus       106 KSTlAk~LAe~Lg~~~iD  123 (278)
                      |||+++.++..++.+++.
T Consensus       121 KTtlar~ia~~l~~~~~~  138 (543)
T 3m6a_A          121 KTSLAKSIAKSLGRKFVR  138 (543)
T ss_dssp             HHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHhcCCCeEE
Confidence            999999999999877653

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=98.10  E-value=4.4e-06  Score=77.19  Aligned_cols=81  Identities=22%  Similarity=0.214  Sum_probs=52.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH--HHH------------HhCC----CChHHHHHhhchhHhHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFE------------AAGG----ESAAKAFRESDEKGYQQAE  153 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l--i~~------------~~g~----~~i~ei~~~~ge~~fr~~e  153 (278)
                      +++.|+|+||+||||||++..||+.++..+++.|..  ...            ..|-    .++.+.-..+....|.+.-
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a   81 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA   81 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH
Confidence            467899999999999999999999999999999875  211            1110    0001111122233455555


Q ss_pred             HHHHHHHHcCCCEEEEeCC
Q 023749          154 TEVLKQLSSMGRLVVCAGN  172 (278)
Q Consensus       154 ~~vl~~l~~~~~~VI~~g~  172 (278)
                      ...+.++...+...|.+||
T Consensus        82 ~~~i~~i~~~gk~pIlVGG  100 (322)
T 3exa_A           82 TPLITEIHERGRLPFLVGG  100 (322)
T ss_dssp             HHHHHHHHHTTCEEEEESC
T ss_pred             HHHHHHHHhCCCcEEEEcC
Confidence            5667777766666666775

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.10  E-value=2.5e-06  Score=78.42  Aligned_cols=27  Identities=15%  Similarity=0.017  Sum_probs=24.4

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      -.|..|.|+|++||||||+++.|+..+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            357899999999999999999999876

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.00  E-value=8.6e-06  Score=70.25  Aligned_cols=34  Identities=12%  Similarity=0.107  Sum_probs=26.8

Q ss_pred             HhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      .|-.+.++|+.|+|+|++||||||+.+.|.+.+.
T Consensus        11 ~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           11 RENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             -----CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3445667899999999999999999999998764

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=97.94  E-value=2.9e-05  Score=72.17  Aligned_cols=29  Identities=21%  Similarity=0.273  Sum_probs=26.4

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      .+++.|+|.|+.||||||+++.|++.|+.
T Consensus         5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            5 VTIVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            45789999999999999999999999865

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.92  E-value=1.1e-05  Score=74.38  Aligned_cols=37  Identities=27%  Similarity=0.219  Sum_probs=33.3

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l  127 (278)
                      -.++.|+|+||+||||||++..||+.++..+++.|..
T Consensus         8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   44 (316)
T 3foz_A            8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSA   44 (316)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence            3467899999999999999999999999999998874

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.86  E-value=2.2e-05  Score=66.72  Aligned_cols=26  Identities=31%  Similarity=0.156  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|+.++|+|++||||||+.+.|...+
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            57899999999999999999998765

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.83  E-value=1.8e-05  Score=75.33  Aligned_cols=80  Identities=15%  Similarity=0.210  Sum_probs=52.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH--HHHH------------hCC----CChHHHHHhhchhHhHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFEA------------AGG----ESAAKAFRESDEKGYQQAET  154 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l--i~~~------------~g~----~~i~ei~~~~ge~~fr~~e~  154 (278)
                      .+.|+|+||+||||||++..||+.++..+++.|..  ...+            .|-    .+..+.-..+....|.+...
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~   81 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECM   81 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHH
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHH
Confidence            45789999999999999999999999999998873  2111            110    00111111223345666656


Q ss_pred             HHHHHHHcCCCEEEEeCC
Q 023749          155 EVLKQLSSMGRLVVCAGN  172 (278)
Q Consensus       155 ~vl~~l~~~~~~VI~~g~  172 (278)
                      ..+.++...+...|.+||
T Consensus        82 ~~i~~i~~~g~~pilVGG   99 (409)
T 3eph_A           82 NAIEDIHRRGKIPIVVGG   99 (409)
T ss_dssp             HHHHHHHTTTCEEEEECS
T ss_pred             HHHHHHHhcCCCEEEECC
Confidence            677777776666666765

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.83  E-value=0.00037  Score=60.53  Aligned_cols=28  Identities=21%  Similarity=0.120  Sum_probs=24.8

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      -.|..++|+|++||||||+.+.|+..+.
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            4689999999999999999999998764

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.78  E-value=1.9e-05  Score=69.10  Aligned_cols=32  Identities=28%  Similarity=0.339  Sum_probs=28.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      ++.|+|+|+||+||||+++.++..++.+++..
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i   76 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI   76 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence            56799999999999999999999999877643

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.66  E-value=6.8e-05  Score=68.26  Aligned_cols=33  Identities=21%  Similarity=0.274  Sum_probs=29.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      .+..|+|.|+||+|||++|+.+|+.++.+++..
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v   82 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSV   82 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence            356899999999999999999999999988754

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=97.63  E-value=0.00021  Score=66.57  Aligned_cols=31  Identities=19%  Similarity=0.137  Sum_probs=27.4

Q ss_pred             ccCCcEEEEEccCCCcHHHHH-HHHHHHhCCc
Q 023749           90 ELKGTSVFLVGMNNAIKTHLG-KFLADALRYY  120 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlA-k~LAe~Lg~~  120 (278)
                      ..+++.|+|.|+.||||||++ +.|++.++..
T Consensus         9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~   40 (341)
T 1osn_A            9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAITP   40 (341)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred             cCCceEEEEeCCCCCCHHHHHHHHHHHHHhhC
Confidence            467889999999999999999 9999988643

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.59  E-value=8.2e-05  Score=61.54  Aligned_cols=41  Identities=20%  Similarity=0.163  Sum_probs=33.7

Q ss_pred             cHHHHHHHHhhhhcc---CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           77 SFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        77 ~~~~~~~~~~~~~~~---~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .....+.+.++...+   .|..++|+|++|+||||+++.++..+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            356667777777554   47899999999999999999999876

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.59  E-value=4e-05  Score=69.21  Aligned_cols=33  Identities=6%  Similarity=-0.114  Sum_probs=28.8

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D  125 (278)
                      +..++|.|+||+|||++|+.+|+.+|.+++..+
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~   68 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMS   68 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            457888899999999999999999999887543

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.59  E-value=0.00014  Score=60.25  Aligned_cols=35  Identities=20%  Similarity=0.058  Sum_probs=28.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV  128 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li  128 (278)
                      +|..+.|+|++||||||+++.+.  .|...++.|.+.
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~~   42 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFCR   42 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHHH
Confidence            58899999999999999999864  356666666554

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.59  E-value=0.00012  Score=66.18  Aligned_cols=43  Identities=21%  Similarity=0.202  Sum_probs=34.2

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc--hHHHHHhC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD--SLVFEAAG  133 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D--~li~~~~g  133 (278)
                      -.+..|+|+|+||+|||++|+.+|..++.+++..+  ++.....|
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g   91 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG   91 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHT
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcC
Confidence            35778999999999999999999999998876543  44444444

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.55  E-value=7.5e-05  Score=71.58  Aligned_cols=33  Identities=24%  Similarity=0.218  Sum_probs=30.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      .++-|+|.||||+|||++|+.+|..+|++|+..
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v  237 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV  237 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence            467799999999999999999999999998764

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.55  E-value=7.8e-05  Score=71.63  Aligned_cols=33  Identities=27%  Similarity=0.225  Sum_probs=30.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      .++-|+|.||||+|||++|+.+|..+|++|+..
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v  246 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS  246 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            468899999999999999999999999998754

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.00011  Score=70.63  Aligned_cols=33  Identities=15%  Similarity=0.119  Sum_probs=30.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      .++-|+|.||||+|||.+|+++|..+|++|+..
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v  246 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQTNATFLKL  246 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            478899999999999999999999999998754

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.54  E-value=0.00014  Score=64.76  Aligned_cols=32  Identities=19%  Similarity=0.247  Sum_probs=28.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      .+..|+|.|+||+||||+++.++..++.+++.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~   84 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFLN   84 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence            46799999999999999999999999988754

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.52  E-value=0.00015  Score=64.03  Aligned_cols=33  Identities=21%  Similarity=0.178  Sum_probs=29.8

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      -.+..|+|.|+||+|||++++.+|+.++.+++.
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~   81 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIR   81 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            357789999999999999999999999988764

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=97.51  E-value=5.2e-05  Score=72.98  Aligned_cols=36  Identities=14%  Similarity=0.287  Sum_probs=32.5

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCch
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS  126 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~  126 (278)
                      +.+..|+|+|+||+||||+|+.||+.++++++..|.
T Consensus        48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~   83 (444)
T 1g41_A           48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   83 (444)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred             cCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence            567889999999999999999999999999987653

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.50  E-value=0.00013  Score=69.53  Aligned_cols=33  Identities=21%  Similarity=0.210  Sum_probs=30.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      .++-|+|.||||+|||.+|+++|..+|++|+..
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v  213 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV  213 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence            467899999999999999999999999998764

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=97.50  E-value=0.00095  Score=62.89  Aligned_cols=28  Identities=18%  Similarity=0.066  Sum_probs=23.2

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      .+++.|+|.|+.||||||+++.|++.|+
T Consensus        47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           47 PTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4677899999999999999999999875

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.46  E-value=0.00017  Score=58.46  Aligned_cols=37  Identities=16%  Similarity=0.170  Sum_probs=28.6

Q ss_pred             HHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           81 KKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        81 ~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .++..+....-.+..++|+|++|+|||++++.+++.+
T Consensus        31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             HHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            3334444433456789999999999999999999987

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.46  E-value=6.9e-05  Score=69.21  Aligned_cols=34  Identities=26%  Similarity=0.310  Sum_probs=31.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D  125 (278)
                      .+..|+|.|+||+|||++|+.||+.++.+++..+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~   83 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD   83 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence            5678999999999999999999999999988654

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.46  E-value=8.3e-05  Score=64.60  Aligned_cols=32  Identities=22%  Similarity=0.221  Sum_probs=28.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      .+..|+|.|+||+|||++++.+++.++.+++.
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~   69 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLA   69 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            45679999999999999999999999988764

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.45  E-value=0.00013  Score=70.05  Aligned_cols=33  Identities=24%  Similarity=0.223  Sum_probs=30.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      .++-|+|.||||+|||.+|+.+|..++++|+..
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v  247 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRI  247 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence            468899999999999999999999999998754

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.44  E-value=0.00014  Score=59.04  Aligned_cols=35  Identities=23%  Similarity=0.157  Sum_probs=28.0

Q ss_pred             HHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           83 KAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        83 ~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +..+....-.+..|+|+|++|+|||++++.+++.+
T Consensus        33 ~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           33 RAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             HHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34444443457789999999999999999999987

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.00012  Score=70.90  Aligned_cols=33  Identities=15%  Similarity=0.145  Sum_probs=30.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      .++-|+|.||||+|||++|+.+|..+|++|+..
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v  274 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRV  274 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence            578899999999999999999999999998754

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.38  E-value=0.00018  Score=68.86  Aligned_cols=36  Identities=25%  Similarity=0.303  Sum_probs=30.9

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHhC--CceecC
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDS  124 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg--~~~iD~  124 (278)
                      +...+..|+|.|+||+|||++|+.+|+.+|  ++++..
T Consensus        59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~   96 (456)
T 2c9o_A           59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPM   96 (456)
T ss_dssp             TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred             CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence            444668899999999999999999999999  777654

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.33  E-value=7.4e-05  Score=65.54  Aligned_cols=32  Identities=31%  Similarity=0.328  Sum_probs=28.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      +..|+|+|+||+|||++|+.+++.++.+++..
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v   75 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSM   75 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            45689999999999999999999999887654

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.30  E-value=0.00013  Score=67.56  Aligned_cols=34  Identities=26%  Similarity=0.274  Sum_probs=30.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D  125 (278)
                      .+..|+|+|+||+|||++|+.||+.++.+++..+
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~  104 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD  104 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence            4668999999999999999999999998887644

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.28  E-value=0.00015  Score=64.23  Aligned_cols=33  Identities=15%  Similarity=0.284  Sum_probs=29.3

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      -.+..++|.|+||+|||++++.+++.++.+++.
T Consensus        48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~   80 (310)
T 1ofh_A           48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIK   80 (310)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            357789999999999999999999999987653

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.27  E-value=0.00042  Score=63.31  Aligned_cols=31  Identities=23%  Similarity=0.261  Sum_probs=27.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh-CCcee
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYF  122 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L-g~~~i  122 (278)
                      .++.|+|.|+||+|||++|+.+|..+ +.+++
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~   75 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFF   75 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence            34789999999999999999999999 77664

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.25  E-value=0.00035  Score=59.15  Aligned_cols=41  Identities=12%  Similarity=0.017  Sum_probs=31.7

Q ss_pred             HHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      ..+.+....+...-.+..++|+|++|+||||+++.+++.++
T Consensus        37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            34444455555444688999999999999999999998875

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.25  E-value=0.00019  Score=64.02  Aligned_cols=27  Identities=19%  Similarity=0.108  Sum_probs=24.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      .+..|+|+|+||+|||++|+.+++.++
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            455799999999999999999999883

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.24  E-value=0.00018  Score=63.50  Aligned_cols=33  Identities=24%  Similarity=0.248  Sum_probs=29.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      .+..++|+|++|+|||++|+.+++.++.+++..
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i   95 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   95 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            456899999999999999999999999987653

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.22  E-value=0.00014  Score=62.97  Aligned_cols=36  Identities=17%  Similarity=0.184  Sum_probs=31.2

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l  127 (278)
                      ..|+.|+|+|++|+||||+|..|+++.+ .+++.|..
T Consensus        32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~   67 (205)
T 2qmh_A           32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRV   67 (205)
T ss_dssp             ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEE
T ss_pred             ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchh
Confidence            4678899999999999999999998765 88887764

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.21  E-value=0.00039  Score=64.38  Aligned_cols=32  Identities=22%  Similarity=0.289  Sum_probs=28.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      +..|+|.|+||+|||++|+.+|..++.+++..
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v  115 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV  115 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            46799999999999999999999999988754

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.20  E-value=0.00038  Score=57.71  Aligned_cols=40  Identities=18%  Similarity=0.055  Sum_probs=30.7

Q ss_pred             HHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ...+++..++...-....++|+|++|+|||++++.+++.+
T Consensus        23 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           23 DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3445555555554455569999999999999999999986

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.19  E-value=0.00043  Score=64.04  Aligned_cols=32  Identities=25%  Similarity=0.353  Sum_probs=29.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      .+..|+|+|++|+|||++|+.+|+.++.+++.
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~  147 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFS  147 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence            46789999999999999999999999988764

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.18  E-value=0.00074  Score=62.97  Aligned_cols=32  Identities=25%  Similarity=0.303  Sum_probs=29.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      .+..|+|.|++|+|||++|+.+|..++.+++.
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~  178 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFN  178 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence            36799999999999999999999999988764

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.17  E-value=0.00032  Score=56.30  Aligned_cols=31  Identities=13%  Similarity=0.165  Sum_probs=26.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh---CCcee
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYF  122 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~~i  122 (278)
                      .+..|+|.|++|+|||++|+.+++..   +.+++
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v   56 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV   56 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE
Confidence            56789999999999999999999865   45554

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.16  E-value=0.00027  Score=57.61  Aligned_cols=26  Identities=23%  Similarity=0.294  Sum_probs=24.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .+..++|+|++|+||||+++.++..+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            88999999999999999999999877

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.16  E-value=0.00029  Score=68.30  Aligned_cols=32  Identities=25%  Similarity=0.312  Sum_probs=28.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      ++.|+|+|+||+|||++++.++..++.+|+..
T Consensus        49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~i   80 (476)
T 2ce7_A           49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHI   80 (476)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence            56799999999999999999999999998754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.13  E-value=0.00062  Score=57.02  Aligned_cols=39  Identities=26%  Similarity=0.192  Sum_probs=30.6

Q ss_pred             HHHHHHHhhhhcc----CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           79 AVKKKAADISTEL----KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        79 ~~~~~~~~~~~~~----~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .+.+.+..+....    .+..|+|.|++|+|||++++.++..+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3555666666544    22789999999999999999999877

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.12  E-value=0.00029  Score=63.07  Aligned_cols=31  Identities=26%  Similarity=0.284  Sum_probs=26.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      ++-++|+|+||+||||+++.||..++..++.
T Consensus        44 ~~GvlL~Gp~GtGKTtLakala~~~~~~~i~   74 (274)
T 2x8a_A           44 PAGVLLAGPPGCGKTLLAKAVANESGLNFIS   74 (274)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHcCCCEEE
Confidence            4459999999999999999999999876654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.10  E-value=0.00029  Score=59.19  Aligned_cols=28  Identities=21%  Similarity=0.169  Sum_probs=24.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCce
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYY  121 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~  121 (278)
                      +++.|+|++||||||+.+.|+..+++.+
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~~   28 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLGKRA   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence            4789999999999999999999887543

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.08  E-value=0.00035  Score=60.87  Aligned_cols=32  Identities=31%  Similarity=0.401  Sum_probs=27.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      ++.++|+|++|+||||+++.++..++..++..
T Consensus        49 ~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~   80 (254)
T 1ixz_A           49 PKGVLLVGPPGVGKTHLARAVAGEARVPFITA   80 (254)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            34599999999999999999999988776554

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.08  E-value=0.00079  Score=69.22  Aligned_cols=34  Identities=18%  Similarity=0.284  Sum_probs=30.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D  125 (278)
                      .++-|+|.||||+|||++|+.+|..+|.+++..+
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~  270 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN  270 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEE
Confidence            4678999999999999999999999999987643

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.08  E-value=0.00073  Score=61.14  Aligned_cols=34  Identities=12%  Similarity=0.064  Sum_probs=29.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D  125 (278)
                      ....|+|.|++|+|||++|+.+++.++.+++..+
T Consensus        54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~   87 (338)
T 3pfi_A           54 CLDHILFSGPAGLGKTTLANIISYEMSANIKTTA   87 (338)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence            4467999999999999999999999998876543

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.08  E-value=0.00067  Score=61.27  Aligned_cols=49  Identities=18%  Similarity=0.197  Sum_probs=35.2

Q ss_pred             HHHHHHhhhhcc--CCcEEEEEccCCCcHHHHHHHHHHHh---CCce--ecCchHH
Q 023749           80 VKKKAADISTEL--KGTSVFLVGMNNAIKTHLGKFLADAL---RYYY--FDSDSLV  128 (278)
Q Consensus        80 ~~~~~~~~~~~~--~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~~--iD~D~li  128 (278)
                      ....+..+....  .+..++|.|++|+||||+++.++..+   +.++  ++...+.
T Consensus        22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~   77 (324)
T 1l8q_A           22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA   77 (324)
T ss_dssp             HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred             HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence            344455555433  45789999999999999999999988   6665  4444443

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.04  E-value=0.00066  Score=65.28  Aligned_cols=48  Identities=15%  Similarity=0.128  Sum_probs=36.2

Q ss_pred             HHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh----------CCceecCc
Q 023749           78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL----------RYYYFDSD  125 (278)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L----------g~~~iD~D  125 (278)
                      ....++..+++.......++|+|+||+|||++++.|++.+          +.+++..|
T Consensus       186 ~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~  243 (468)
T 3pxg_A          186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD  243 (468)
T ss_dssp             HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred             HHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence            3344445666655667789999999999999999999997          66666554

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.02  E-value=0.0007  Score=65.77  Aligned_cols=32  Identities=22%  Similarity=0.244  Sum_probs=28.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      ...++|+|++|+||||+|+.+++.+|++++..
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~i  108 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ  108 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            47899999999999999999999999988653

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.01  E-value=0.00043  Score=63.40  Aligned_cols=29  Identities=28%  Similarity=0.250  Sum_probs=26.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCce
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYY  121 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~  121 (278)
                      ...++|+|++|+||||+++.++..++.++
T Consensus        51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~   79 (334)
T 1in4_A           51 LDHVLLAGPPGLGKTTLAHIIASELQTNI   79 (334)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            36799999999999999999999998764

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.01  E-value=0.00034  Score=63.40  Aligned_cols=37  Identities=14%  Similarity=0.102  Sum_probs=30.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC-------Ccee-cCchHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYF-DSDSLV  128 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg-------~~~i-D~D~li  128 (278)
                      .+..|.|+|++||||||+++.|++.++       ...+ ..|.++
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~   74 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   74 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence            567899999999999999999999875       2344 777754

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.00  E-value=0.00044  Score=58.69  Aligned_cols=27  Identities=22%  Similarity=0.283  Sum_probs=24.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      +|..+.|+|++||||||+.+.|+..+.
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            588999999999999999999998763

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.98  E-value=0.00028  Score=56.59  Aligned_cols=42  Identities=10%  Similarity=0.259  Sum_probs=31.0

Q ss_pred             HHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        79 ~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      .+++.+..++.  .+..|+|.|++|+|||++|+.++...+ +++.
T Consensus        15 ~l~~~~~~~~~--~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~   56 (143)
T 3co5_A           15 EMNREVEAAAK--RTSPVFLTGEAGSPFETVARYFHKNGT-PWVS   56 (143)
T ss_dssp             HHHHHHHHHHT--CSSCEEEEEETTCCHHHHHGGGCCTTS-CEEC
T ss_pred             HHHHHHHHHhC--CCCcEEEECCCCccHHHHHHHHHHhCC-CeEE
Confidence            44444444443  456799999999999999999998776 5543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.97  E-value=0.00043  Score=59.59  Aligned_cols=26  Identities=19%  Similarity=0.115  Sum_probs=24.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..++|+|++||||||+.+.|+..+
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            58899999999999999999999865

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.97  E-value=0.0011  Score=63.14  Aligned_cols=39  Identities=26%  Similarity=0.289  Sum_probs=29.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh-CCcee--cCchHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYF--DSDSLVFE  130 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L-g~~~i--D~D~li~~  130 (278)
                      .+..|+|.|+||+|||++|+.+|..+ +.+++  +..++...
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~  207 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK  207 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence            45789999999999999999999999 77764  44444433

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.91  E-value=0.0006  Score=60.41  Aligned_cols=31  Identities=32%  Similarity=0.431  Sum_probs=26.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      +.|+|+|++|+||||+++.++..++..++..
T Consensus        74 ~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~  104 (278)
T 1iy2_A           74 KGVLLVGPPGVGKTHLARAVAGEARVPFITA  104 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence            4599999999999999999999988776654

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.88  E-value=0.0011  Score=60.56  Aligned_cols=34  Identities=15%  Similarity=0.195  Sum_probs=28.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh-----------CCceecCc
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL-----------RYYYFDSD  125 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L-----------g~~~iD~D  125 (278)
                      .+..++|.|++|+||||+++.+++.+           +++++..+
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~   88 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN   88 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence            46689999999999999999999987           77766543

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.86  E-value=0.001  Score=67.40  Aligned_cols=49  Identities=14%  Similarity=0.116  Sum_probs=37.6

Q ss_pred             HHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh----------CCceecCch
Q 023749           78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL----------RYYYFDSDS  126 (278)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L----------g~~~iD~D~  126 (278)
                      ....++..+++..-....++|+|+||+|||++++.||+.+          +..++..|-
T Consensus       186 ~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~  244 (758)
T 3pxi_A          186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM  244 (758)
T ss_dssp             HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred             hHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence            4445556666655677789999999999999999999997          777776654

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.81  E-value=0.00059  Score=61.74  Aligned_cols=30  Identities=23%  Similarity=0.306  Sum_probs=27.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCcee
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i  122 (278)
                      +..++|.|+||+|||++++.+++.++.+++
T Consensus        46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~   75 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFH   75 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence            679999999999999999999999998764

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.80  E-value=0.00085  Score=61.24  Aligned_cols=31  Identities=26%  Similarity=0.319  Sum_probs=27.0

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      +...+..++|.|+||+|||++|+.+++.++.
T Consensus        66 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            3345679999999999999999999999984

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.79  E-value=0.0012  Score=57.48  Aligned_cols=43  Identities=9%  Similarity=0.029  Sum_probs=32.0

Q ss_pred             HHHHHhhhhccC-CcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           81 KKKAADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        81 ~~~~~~~~~~~~-~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      ......+...+. ...|+|.||||+||||+|..|++.++-..+.
T Consensus        45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~   88 (212)
T 1tue_A           45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   88 (212)
T ss_dssp             HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence            344455555443 3479999999999999999999998755443

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.78  E-value=0.00099  Score=62.68  Aligned_cols=32  Identities=19%  Similarity=0.052  Sum_probs=28.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      .|..|+|+|++||||||+++.|+..++..++.
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            57899999999999999999999988877665

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.77  E-value=0.00067  Score=60.73  Aligned_cols=31  Identities=23%  Similarity=0.154  Sum_probs=27.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCcee
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i  122 (278)
                      .+..++|+|++|+|||++|+.+++.++.+++
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~   67 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLR   67 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            4578999999999999999999999998864

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.73  E-value=0.0011  Score=64.55  Aligned_cols=32  Identities=31%  Similarity=0.401  Sum_probs=27.8

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      ++-|+|+|+||+||||+++.++..++.+++..
T Consensus        64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i~i   95 (499)
T 2dhr_A           64 PKGVLLVGPPGVGKTHLARAVAGEARVPFITA   95 (499)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            45699999999999999999999998777643

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.73  E-value=0.00098  Score=54.99  Aligned_cols=27  Identities=30%  Similarity=0.245  Sum_probs=24.8

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      -.|..+.|+|+.||||||+.+.|+..+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            468899999999999999999999876

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=96.69  E-value=0.0026  Score=56.36  Aligned_cols=40  Identities=18%  Similarity=0.055  Sum_probs=29.3

Q ss_pred             HHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ..+++....+...-....++|.|++|+|||++++.+++.+
T Consensus        23 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           23 DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             HHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence            4455555555433333459999999999999999999986

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.69  E-value=0.0022  Score=58.44  Aligned_cols=24  Identities=21%  Similarity=0.101  Sum_probs=21.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhC
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      +++|.|++|+||||+++.+++.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHc
Confidence            389999999999999999999863

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.67  E-value=0.0009  Score=60.80  Aligned_cols=26  Identities=23%  Similarity=0.399  Sum_probs=24.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .+..++|+|++|+||||+++.+++.+
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999988

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.67  E-value=0.003  Score=52.61  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=24.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      +..++|.|++|+||||+++.+++.++.
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            357999999999999999999998864

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.64  E-value=0.00098  Score=56.36  Aligned_cols=27  Identities=22%  Similarity=0.076  Sum_probs=24.0

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      -.|..+.|+|++||||||+++.|+..+
T Consensus        23 ~~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           23 ETQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            368899999999999999999998743

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.63  E-value=0.0015  Score=59.13  Aligned_cols=33  Identities=24%  Similarity=0.390  Sum_probs=28.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh------CCceecC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL------RYYYFDS  124 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L------g~~~iD~  124 (278)
                      .+..++|+|++|+||||+++.+++.+      ++.++..
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i   82 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI   82 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            46789999999999999999999988      7666543

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.62  E-value=0.0022  Score=58.44  Aligned_cols=28  Identities=18%  Similarity=0.053  Sum_probs=24.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHh----CCcee
Q 023749           95 SVFLVGMNNAIKTHLGKFLADAL----RYYYF  122 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~L----g~~~i  122 (278)
                      .++|+|++|+||||+++.+++.+    ++.++
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~   77 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFV   77 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEE
Confidence            89999999999999999999988    55554

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.62  E-value=0.0024  Score=60.91  Aligned_cols=49  Identities=16%  Similarity=0.165  Sum_probs=35.6

Q ss_pred             HHHHHHHhhhhccC-CcEEEEEccCCCcHHHHHHHHHHHh-----CCce--ecCchH
Q 023749           79 AVKKKAADISTELK-GTSVFLVGMNNAIKTHLGKFLADAL-----RYYY--FDSDSL  127 (278)
Q Consensus        79 ~~~~~~~~~~~~~~-~~~I~L~G~~GSGKSTlAk~LAe~L-----g~~~--iD~D~l  127 (278)
                      ..+..+..++..-. +..++|.|++|+||||+++.++..+     +.++  ++...+
T Consensus       115 ~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~  171 (440)
T 2z4s_A          115 FAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF  171 (440)
T ss_dssp             HHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred             HHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence            34555666664433 6789999999999999999999987     5554  454444

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.61  E-value=0.0014  Score=55.70  Aligned_cols=37  Identities=22%  Similarity=0.181  Sum_probs=31.9

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV  128 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li  128 (278)
                      ..|.-|+|+|++|+||||+|..|.+ .|+.++.-|.+.
T Consensus        14 v~G~gvli~G~SGaGKStlal~L~~-rG~~lvaDD~v~   50 (181)
T 3tqf_A           14 IDKMGVLITGEANIGKSELSLALID-RGHQLVCDDVID   50 (181)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHH-TTCEEEESSEEE
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHH-cCCeEecCCEEE
Confidence            4688999999999999999999987 599988766654

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.60  E-value=0.0012  Score=64.02  Aligned_cols=34  Identities=18%  Similarity=0.242  Sum_probs=30.1

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      -.+..|+|.|+||+|||++|+.++..++.+|+..
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~v  269 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI  269 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            3567899999999999999999999999888754

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.59  E-value=0.0015  Score=55.09  Aligned_cols=28  Identities=18%  Similarity=0.037  Sum_probs=24.2

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      --.|..++|+|++||||||+++.++..+
T Consensus        20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           20 IPQGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3468899999999999999999998543

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.57  E-value=0.0013  Score=63.10  Aligned_cols=32  Identities=22%  Similarity=0.076  Sum_probs=28.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D  125 (278)
                      ..++|.|+||+||||+|+.+++.++.+++..+
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~   82 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVERIS   82 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence            67999999999999999999999998876543

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.56  E-value=0.0023  Score=58.12  Aligned_cols=53  Identities=15%  Similarity=0.120  Sum_probs=37.4

Q ss_pred             HHHHHHHhhhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhC----Cce--ecCchHHHHH
Q 023749           79 AVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALR----YYY--FDSDSLVFEA  131 (278)
Q Consensus        79 ~~~~~~~~~~~~~---~~~~I~L~G~~GSGKSTlAk~LAe~Lg----~~~--iD~D~li~~~  131 (278)
                      .+...+.++....   .+..++|.|++|+|||++++.++..+.    .++  +....++.+.
T Consensus       135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l  196 (308)
T 2qgz_A          135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV  196 (308)
T ss_dssp             HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence            4555666777654   368999999999999999999998654    433  4544444433

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.56  E-value=0.0013  Score=55.70  Aligned_cols=25  Identities=32%  Similarity=0.304  Sum_probs=22.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      |.+|.|+|++||||||+.+.|+..+
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhc
Confidence            5689999999999999999999876

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.53  E-value=0.0021  Score=56.26  Aligned_cols=27  Identities=15%  Similarity=0.119  Sum_probs=24.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      .+..|+|+|++|+|||++|+.+++.++
T Consensus        28 ~~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            467899999999999999999998764

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.53  E-value=0.0018  Score=59.63  Aligned_cols=27  Identities=15%  Similarity=0.241  Sum_probs=25.5

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      -.+.+|+|.|+||+|||++++.+++.+
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            478899999999999999999999998

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.52  E-value=0.0013  Score=58.46  Aligned_cols=24  Identities=38%  Similarity=0.418  Sum_probs=22.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHh
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ..++|+|++|+|||++|+.+++.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            479999999999999999999987

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.52  E-value=0.0029  Score=65.08  Aligned_cols=34  Identities=21%  Similarity=0.243  Sum_probs=30.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D  125 (278)
                      .++.|+|.||||+|||.+|+.+|..++.+|+..+
T Consensus       510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~  543 (806)
T 3cf2_A          510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIK  543 (806)
T ss_dssp             CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECC
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHhCCceEEec
Confidence            3567999999999999999999999999998653

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.51  E-value=0.0012  Score=57.73  Aligned_cols=24  Identities=17%  Similarity=0.234  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+.+.|+.
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhc
Confidence            689999999999999999999974

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.51  E-value=0.0017  Score=59.49  Aligned_cols=26  Identities=27%  Similarity=0.248  Sum_probs=24.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.++.|+|++||||||+.+.|+.-+
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            68999999999999999999999866

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.46  E-value=0.0014  Score=56.92  Aligned_cols=24  Identities=29%  Similarity=0.288  Sum_probs=22.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|..+.|+|++||||||+.+.|+.
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~G   52 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGL   52 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            688999999999999999999974

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.44  E-value=0.0024  Score=57.64  Aligned_cols=38  Identities=13%  Similarity=-0.040  Sum_probs=27.3

Q ss_pred             HHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           81 KKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        81 ~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      ++........-....++|.|++|+||||+++.+++.++
T Consensus        46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            33333343322234599999999999999999999864

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=96.43  E-value=0.0034  Score=55.72  Aligned_cols=41  Identities=17%  Similarity=0.036  Sum_probs=30.0

Q ss_pred             HHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      ..+++....+...-....++|.|++|+||||+++.+++.++
T Consensus        31 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           31 EHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             HHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence            34444444444333444699999999999999999999863

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.42  E-value=0.0019  Score=54.29  Aligned_cols=37  Identities=19%  Similarity=0.056  Sum_probs=28.8

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHHHhC--CceecCch
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDS  126 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg--~~~iD~D~  126 (278)
                      --.|..++|+|++||||||+++.++...+  ..+++.+.
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~   55 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG   55 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence            34688999999999999999999987444  33566543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.39  E-value=0.0016  Score=57.03  Aligned_cols=24  Identities=29%  Similarity=0.235  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+.+.|+.
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G   53 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLA   53 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            688999999999999999999965

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.37  E-value=0.004  Score=56.38  Aligned_cols=40  Identities=15%  Similarity=0.072  Sum_probs=28.5

Q ss_pred             HHHHHHHHhhh-hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           78 FAVKKKAADIS-TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        78 ~~~~~~~~~~~-~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ..+.+....+. ..-....++|+|++|+||||+++.++..+
T Consensus        20 ~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           20 EELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             HHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34444444444 32233449999999999999999999965

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.34  E-value=0.0022  Score=57.02  Aligned_cols=28  Identities=14%  Similarity=0.074  Sum_probs=24.6

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .-+|..++|+|++||||||+.+.|+..+
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            3468899999999999999999998754

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.32  E-value=0.0027  Score=53.32  Aligned_cols=26  Identities=15%  Similarity=0.029  Sum_probs=22.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|+.++++|++|+||||++..++..+
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999996666554

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.32  E-value=0.0018  Score=57.79  Aligned_cols=24  Identities=33%  Similarity=0.444  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+.+.|+.
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~G   59 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTG   59 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhc
Confidence            589999999999999999999975

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.32  E-value=0.0022  Score=56.52  Aligned_cols=24  Identities=50%  Similarity=0.584  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+.+.|+.
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            688999999999999999999975

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.31  E-value=0.0025  Score=58.11  Aligned_cols=26  Identities=35%  Similarity=0.323  Sum_probs=23.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|..|.|+|++||||||+.+.|+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            57899999999999999999999765

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.29  E-value=0.0019  Score=56.90  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+.-
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999999753

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.29  E-value=0.0024  Score=54.44  Aligned_cols=27  Identities=22%  Similarity=0.101  Sum_probs=24.2

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      --.|..+.|+|++||||||+++.++..
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            346899999999999999999999984

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.28  E-value=0.002  Score=57.37  Aligned_cols=25  Identities=12%  Similarity=0.204  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+.-
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999999753

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.28  E-value=0.0029  Score=53.05  Aligned_cols=25  Identities=24%  Similarity=0.070  Sum_probs=22.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .+.|.|+|++||||||+...|+..|
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhh
Confidence            3578999999999999999999876

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.28  E-value=0.002  Score=56.46  Aligned_cols=25  Identities=36%  Similarity=0.340  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+.-
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999999753

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.28  E-value=0.002  Score=57.97  Aligned_cols=25  Identities=20%  Similarity=0.215  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+.-
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999999753

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.28  E-value=0.002  Score=56.02  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+.-
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999754

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.27  E-value=0.002  Score=56.99  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+.-
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999999753

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.25  E-value=0.0026  Score=57.86  Aligned_cols=26  Identities=35%  Similarity=0.325  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|.+|.|+|++||||||+.+.||..+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            47799999999999999999999865

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.25  E-value=0.002  Score=56.57  Aligned_cols=25  Identities=12%  Similarity=0.127  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+.-
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999999999753

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.22  E-value=0.0022  Score=57.26  Aligned_cols=25  Identities=20%  Similarity=0.263  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+.-
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence            6889999999999999999999753

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.22  E-value=0.0018  Score=54.91  Aligned_cols=28  Identities=14%  Similarity=0.204  Sum_probs=23.6

Q ss_pred             EEEEccCCCcHHHHHHHHHHHhCCc--eecC
Q 023749           96 VFLVGMNNAIKTHLGKFLADALRYY--YFDS  124 (278)
Q Consensus        96 I~L~G~~GSGKSTlAk~LAe~Lg~~--~iD~  124 (278)
                      |+|+|.+||||||+|..|+.. |.+  |+++
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT   31 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQVLYIAT   31 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence            789999999999999999977 754  4444

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.22  E-value=0.0027  Score=56.64  Aligned_cols=25  Identities=28%  Similarity=0.296  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+.-
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999999753

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.21  E-value=0.0022  Score=56.92  Aligned_cols=25  Identities=32%  Similarity=0.410  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+.-
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999999753

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.21  E-value=0.002  Score=55.72  Aligned_cols=25  Identities=36%  Similarity=0.274  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+.-
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999999753

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.21  E-value=0.0022  Score=57.32  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+.-
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999999999753

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.19  E-value=0.005  Score=54.56  Aligned_cols=38  Identities=21%  Similarity=0.190  Sum_probs=27.6

Q ss_pred             HHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           80 VKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        80 ~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +++....+...-....++|.|++|+||||+++.+++.+
T Consensus        29 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           29 TIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             HHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            33344444433333459999999999999999999986

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.19  E-value=0.0021  Score=55.32  Aligned_cols=25  Identities=32%  Similarity=0.154  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+..
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999999863

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.17  E-value=0.0033  Score=56.01  Aligned_cols=29  Identities=10%  Similarity=-0.001  Sum_probs=24.9

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +--.|..++|+|++|+||||+++.++..+
T Consensus        31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           31 GARGGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            33468999999999999999999998754

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=96.15  E-value=0.0063  Score=61.45  Aligned_cols=39  Identities=21%  Similarity=0.176  Sum_probs=31.4

Q ss_pred             HHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        79 ~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ...++..+++..-.+..++|+|+||+|||++++.|++.+
T Consensus       193 ~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          193 KELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             HHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            334445556555578899999999999999999999987

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.15  E-value=0.0042  Score=63.95  Aligned_cols=39  Identities=18%  Similarity=0.137  Sum_probs=30.6

Q ss_pred             HHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        79 ~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ....+..+++..-....++|+|+||+|||++++.|++.+
T Consensus       177 ~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          177 EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            444455555544456679999999999999999999988

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.14  E-value=0.0026  Score=56.54  Aligned_cols=25  Identities=28%  Similarity=0.272  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+.-
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999999999753

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.14  E-value=0.0032  Score=57.48  Aligned_cols=26  Identities=27%  Similarity=0.234  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .+..|+|+|++||||||+++.||..+
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            46789999999999999999999766

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.14  E-value=0.0026  Score=56.29  Aligned_cols=25  Identities=36%  Similarity=0.331  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+.-
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            6889999999999999999999753

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.13  E-value=0.0026  Score=56.60  Aligned_cols=25  Identities=20%  Similarity=0.335  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+.-
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            6889999999999999999999753

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.13  E-value=0.0032  Score=58.04  Aligned_cols=26  Identities=35%  Similarity=0.293  Sum_probs=23.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..|.|+|++||||||+.+.|+..+
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999765

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.12  E-value=0.002  Score=53.78  Aligned_cols=24  Identities=25%  Similarity=0.199  Sum_probs=21.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHh
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +.|.|+|++||||||+.+.|+..+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999998865

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.12  E-value=0.0031  Score=58.32  Aligned_cols=28  Identities=21%  Similarity=0.179  Sum_probs=24.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      +..+.|+|++||||||+++.|+..+...
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            7789999999999999999999876543

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.11  E-value=0.0027  Score=57.11  Aligned_cols=26  Identities=38%  Similarity=0.359  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+.-+
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            68899999999999999999997543

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.08  E-value=0.0041  Score=52.99  Aligned_cols=38  Identities=16%  Similarity=-0.004  Sum_probs=28.0

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh-----CCceecCch
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS  126 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L-----g~~~iD~D~  126 (278)
                      +--.|..++|+|++|+||||++..++...     +..+++.+.
T Consensus        19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~   61 (247)
T 2dr3_A           19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE   61 (247)
T ss_dssp             SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence            33478899999999999999988886543     233555543

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.07  E-value=0.0039  Score=56.47  Aligned_cols=35  Identities=23%  Similarity=0.190  Sum_probs=28.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh----CC--ceecCch
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL----RY--YYFDSDS  126 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L----g~--~~iD~D~  126 (278)
                      +|.+|+|+|++|+||||++..||..+    |.  .+++.|.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~  144 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT  144 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence            57899999999999999999998654    43  3566665

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.06  E-value=0.0029  Score=55.96  Aligned_cols=25  Identities=28%  Similarity=0.341  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+.-
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999999753

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.05  E-value=0.0043  Score=56.14  Aligned_cols=27  Identities=22%  Similarity=0.183  Sum_probs=24.5

Q ss_pred             hhccCCcEEEEEccCCCcHHHHHHHHH
Q 023749           88 STELKGTSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        88 ~~~~~~~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      ...+.|..+.|+|++|+||||+.+.|+
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             HhhccCcEEEEECCCCCCHHHHHHHHH
Confidence            356789999999999999999999998

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.05  E-value=0.005  Score=51.83  Aligned_cols=34  Identities=18%  Similarity=0.074  Sum_probs=26.5

Q ss_pred             HhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      ....+.-....|+|+|.+|+||||+...|+..+.
T Consensus        22 ~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           22 REALRESGTVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             HHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             HHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            3333333567899999999999999999998763

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.02  E-value=0.0048  Score=51.65  Aligned_cols=25  Identities=28%  Similarity=0.080  Sum_probs=22.2

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .+.|+|+|++||||||+.+.|...+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            4679999999999999999998764

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.98  E-value=0.011  Score=53.62  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=24.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      +..++|.|++|+||||+++.+++.++.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            346899999999999999999999875

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=95.98  E-value=0.0015  Score=60.47  Aligned_cols=28  Identities=18%  Similarity=0.066  Sum_probs=22.9

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      ..++.|+|.|+.||||||+++.|++.|+
T Consensus         2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            2 PTLLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3567899999999999999999999875

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.95  E-value=0.0042  Score=58.01  Aligned_cols=26  Identities=35%  Similarity=0.325  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|.+|.|+|++||||||+.+.||..+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            47799999999999999999999865

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.95  E-value=0.0049  Score=54.53  Aligned_cols=27  Identities=33%  Similarity=0.188  Sum_probs=24.0

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      -..|..+.|+|++||||||+++.++..
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            447999999999999999999999863

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.91  E-value=0.0078  Score=54.01  Aligned_cols=47  Identities=15%  Similarity=-0.004  Sum_probs=33.2

Q ss_pred             HHHHHHHHhhhhccC-CcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           78 FAVKKKAADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        78 ~~~~~~~~~~~~~~~-~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      ..+++....+...-. +..+++.|++|+|||++++.+++.++.+++..
T Consensus        32 ~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i   79 (324)
T 3u61_B           32 AFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFV   79 (324)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred             HHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            444455555543222 34566778899999999999999999887653

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.91  E-value=0.0048  Score=55.11  Aligned_cols=33  Identities=15%  Similarity=0.126  Sum_probs=28.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D  125 (278)
                      +..++|.|++|+||||+++.+++.+++.+++..
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~   63 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCR   63 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHcCcEEEEee
Confidence            489999999999999999999999887677653

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=95.87  E-value=0.0026  Score=57.39  Aligned_cols=26  Identities=23%  Similarity=0.141  Sum_probs=23.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      +..|+|.|++|+|||++|+.+++.++
T Consensus        45 ~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           45 IGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CceEEEECCCCccHHHHHHHHHHhCc
Confidence            34599999999999999999999886

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.87  E-value=0.0047  Score=54.26  Aligned_cols=23  Identities=22%  Similarity=0.219  Sum_probs=21.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      ..+.|+|++||||||+.+.|+.-
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            78899999999999999999753

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=95.85  E-value=0.0069  Score=54.73  Aligned_cols=37  Identities=14%  Similarity=0.169  Sum_probs=28.3

Q ss_pred             HHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        79 ~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .+++.+..+++  .+..|+|+|++|+|||++|+.++...
T Consensus        13 ~~~~~~~~~a~--~~~~vLi~Ge~GtGKt~lAr~i~~~~   49 (304)
T 1ojl_A           13 HLLNEIAMVAP--SDATVLIHGDSGTGKELVARALHACS   49 (304)
T ss_dssp             HHHHHHHHHCS--TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhC--CCCcEEEECCCCchHHHHHHHHHHhC
Confidence            34444444443  46789999999999999999999865

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.84  E-value=0.0048  Score=62.38  Aligned_cols=29  Identities=24%  Similarity=0.219  Sum_probs=26.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      .++|+|++|+|||++|+.|++.++.+++.
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~  518 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALGIELLR  518 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCEEE
Confidence            69999999999999999999999977653

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=95.84  E-value=0.0048  Score=57.68  Aligned_cols=25  Identities=32%  Similarity=0.442  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+--
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcC
Confidence            5889999999999999999999863

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.83  E-value=0.0032  Score=57.51  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+.-
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcC
Confidence            6899999999999999999999753

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=95.79  E-value=0.0044  Score=56.05  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+.-
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999999999753

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=95.78  E-value=0.0044  Score=55.26  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=22.2

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      |..+.|+|++||||||+.+.|+.-
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCC
Confidence            889999999999999999999753

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.77  E-value=0.0055  Score=59.76  Aligned_cols=26  Identities=27%  Similarity=0.222  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|.+|.|+|++||||||+.+.|+..+
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHh
Confidence            47799999999999999999999765

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.76  E-value=0.0048  Score=57.29  Aligned_cols=26  Identities=23%  Similarity=0.218  Sum_probs=23.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|..|+|+|++||||||+.+.|+..+
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            68899999999999999999998754

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.75  E-value=0.0055  Score=57.15  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+--
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            5889999999999999999999853

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.75  E-value=0.0055  Score=57.20  Aligned_cols=25  Identities=32%  Similarity=0.235  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+--
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHCC
Confidence            5889999999999999999999853

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.74  E-value=0.008  Score=49.22  Aligned_cols=26  Identities=23%  Similarity=0.249  Sum_probs=22.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      +...+|+|+.||||||+.++|.-.++
T Consensus        26 ~g~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           26 KGFTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence            44889999999999999999987665

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=95.73  E-value=0.0056  Score=57.68  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+--
T Consensus        28 ~Ge~~~llGpsGsGKSTLLr~iaGl   52 (381)
T 3rlf_A           28 EGEFVVFVGPSGCGKSTLLRMIAGL   52 (381)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHcC
Confidence            5889999999999999999999863

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.73  E-value=0.005  Score=55.58  Aligned_cols=27  Identities=22%  Similarity=0.245  Sum_probs=23.8

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..+.+..+.|+|++||||||+.+.|+.
T Consensus       165 ~~l~geiv~l~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          165 EYLKGKISTMAGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             HHHSSSEEEEECSTTSSHHHHHHHHST
T ss_pred             HHhcCCeEEEECCCCCcHHHHHHHhcc
Confidence            456789999999999999999999963

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.72  E-value=0.0063  Score=56.83  Aligned_cols=27  Identities=22%  Similarity=0.233  Sum_probs=23.9

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..+.|..++|+|++|+||||+.+.|+.
T Consensus       211 ~~~~G~~~~lvG~sG~GKSTLln~L~g  237 (358)
T 2rcn_A          211 EALTGRISIFAGQSGVGKSSLLNALLG  237 (358)
T ss_dssp             HHHTTSEEEEECCTTSSHHHHHHHHHC
T ss_pred             HhcCCCEEEEECCCCccHHHHHHHHhc
Confidence            445789999999999999999999964

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=95.72  E-value=0.0058  Score=57.14  Aligned_cols=25  Identities=24%  Similarity=0.210  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+--
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCchHHHHHHHHhcC
Confidence            5889999999999999999999853

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.70  E-value=0.0062  Score=56.86  Aligned_cols=27  Identities=15%  Similarity=0.071  Sum_probs=24.0

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      -+|..|+|+|++||||||+.+.|+..+
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            357899999999999999999998755

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.67  E-value=0.0061  Score=57.18  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+--
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHcC
Confidence            5889999999999999999999853

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.67  E-value=0.0062  Score=57.10  Aligned_cols=24  Identities=21%  Similarity=0.160  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+.+.|+-
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~G   76 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNL   76 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhc
Confidence            589999999999999999999975

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=95.65  E-value=0.0064  Score=57.01  Aligned_cols=25  Identities=24%  Similarity=0.297  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+--
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcC
Confidence            6889999999999999999999853

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.63  E-value=0.005  Score=57.27  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+--
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCccHHHHHHHHHcC
Confidence            5889999999999999999999853

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.62  E-value=0.0056  Score=58.93  Aligned_cols=26  Identities=31%  Similarity=0.388  Sum_probs=23.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|.++.|+|++||||||+.|.|+..+
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            79999999999999999999998743

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.61  E-value=0.012  Score=49.54  Aligned_cols=29  Identities=24%  Similarity=0.101  Sum_probs=24.5

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +.-....|+|+|.+|+||||+...|+..+
T Consensus        34 ~~~~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           34 NKHGVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             HHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            33356789999999999999999999875

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=95.59  E-value=0.0042  Score=60.49  Aligned_cols=29  Identities=34%  Similarity=0.464  Sum_probs=25.8

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      +.+..|+|.|+||+|||++|+.|+..++.
T Consensus        39 ~~~~~VLL~GpPGtGKT~LAraLa~~l~~   67 (500)
T 3nbx_X           39 LSGESVFLLGPPGIAKSLIARRLKFAFQN   67 (500)
T ss_dssp             HHTCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred             hcCCeeEeecCchHHHHHHHHHHHHHHhh
Confidence            45789999999999999999999998753

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=95.58  E-value=0.0079  Score=55.25  Aligned_cols=36  Identities=17%  Similarity=0.140  Sum_probs=30.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV  128 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li  128 (278)
                      .|+-|+|+|.+|+||||++..|.++ |+.++.-|.+.
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~  178 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVE  178 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEE
Confidence            5889999999999999999999874 99988766543

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.53  E-value=0.017  Score=51.56  Aligned_cols=31  Identities=19%  Similarity=0.298  Sum_probs=26.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCc--eecC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYY--YFDS  124 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~--~iD~  124 (278)
                      ..++|.|++|+||||+++.+++.++..  +++.
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~   63 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL   63 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence            699999999999999999999987643  4443

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.52  E-value=0.0084  Score=55.43  Aligned_cols=29  Identities=21%  Similarity=0.028  Sum_probs=25.4

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +--.|..+.|+|++||||||+++.++...
T Consensus       127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          127 GIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            33478899999999999999999999865

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=95.51  E-value=0.009  Score=52.09  Aligned_cols=27  Identities=26%  Similarity=-0.064  Sum_probs=23.4

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      -.|..++++|+||+||||.+-.++.++
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            358899999999999999998888766

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.50  E-value=0.0057  Score=56.60  Aligned_cols=36  Identities=28%  Similarity=0.228  Sum_probs=28.8

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHhCC--ceecC
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRY--YYFDS  124 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~--~~iD~  124 (278)
                      +-..+..++|.|+||+||||+|..++...|.  .|++.
T Consensus       119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            4446778899999999999999999976553  46666

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.47  E-value=0.0079  Score=56.76  Aligned_cols=24  Identities=25%  Similarity=0.203  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|..+.|+|++||||||+.+.|+.
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhC
Confidence            589999999999999999999975

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=95.46  E-value=0.0088  Score=54.79  Aligned_cols=35  Identities=26%  Similarity=0.247  Sum_probs=27.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh---CC--ceecCch
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDS  126 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~--~~iD~D~  126 (278)
                      .+.+|.|+|++|+||||++..||..+   |.  -++|.|.
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~  143 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT  143 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            36789999999999999999999766   32  2456664

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=95.45  E-value=0.011  Score=53.21  Aligned_cols=36  Identities=17%  Similarity=0.279  Sum_probs=27.0

Q ss_pred             HHhhhhcc-C-CcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           84 AADISTEL-K-GTSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        84 ~~~~~~~~-~-~~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      ...|+..- . ...|+|.||||+|||.+|+.||..++.
T Consensus        93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l  130 (267)
T 1u0j_A           93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            44454432 2 347999999999999999999987643

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.43  E-value=0.005  Score=57.28  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+--
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            5889999999999999999999853

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=95.43  E-value=0.01  Score=50.65  Aligned_cols=25  Identities=12%  Similarity=-0.007  Sum_probs=21.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .++.++++|+||||||++|..+...
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence            5678999999999999999886544

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.38  E-value=0.0095  Score=55.44  Aligned_cols=27  Identities=19%  Similarity=0.125  Sum_probs=23.3

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ..+..|+|+|++||||||+.+.++..+
T Consensus       121 ~~~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          121 VPRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            345599999999999999999998765

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.38  E-value=0.016  Score=55.56  Aligned_cols=35  Identities=29%  Similarity=0.260  Sum_probs=28.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCchH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSL  127 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~l  127 (278)
                      +.+|+++|++|+||||++..||..+   |..  ++++|..
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~  139 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW  139 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            6789999999999999999999766   443  4677754

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.30  E-value=0.0084  Score=57.39  Aligned_cols=35  Identities=26%  Similarity=0.203  Sum_probs=27.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCch
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDS  126 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~  126 (278)
                      .+.+|+++|++||||||++..||..+   |..  +++.|.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~  135 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV  135 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence            36789999999999999999999766   433  456664

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.29  E-value=0.01  Score=49.05  Aligned_cols=23  Identities=22%  Similarity=0.196  Sum_probs=20.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      ..|+|+|++||||||+.+.|+..
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            47899999999999999999763

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.27  E-value=0.01  Score=48.23  Aligned_cols=24  Identities=38%  Similarity=0.389  Sum_probs=21.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .+..|+|+|.+|+||||+.+.|..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~   26 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAG   26 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            356899999999999999999975

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.26  E-value=0.019  Score=53.02  Aligned_cols=25  Identities=24%  Similarity=0.207  Sum_probs=22.8

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +..|.|+|+|||||||+-..|...+
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            6789999999999999999998754

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.26  E-value=0.011  Score=52.73  Aligned_cols=24  Identities=21%  Similarity=0.213  Sum_probs=21.3

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHh
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ..+.|+|++||||||+.+.|+..+
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999998755

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.25  E-value=0.0068  Score=55.67  Aligned_cols=26  Identities=23%  Similarity=0.244  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|..++|+|++||||||+.+.|+..+
T Consensus       170 ~g~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          170 IGKNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999999998654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=95.25  E-value=0.011  Score=54.28  Aligned_cols=26  Identities=19%  Similarity=0.147  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|..+.|+|++||||||+.+.|+..+
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            57899999999999999999998654

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=95.25  E-value=0.014  Score=53.50  Aligned_cols=26  Identities=23%  Similarity=0.324  Sum_probs=23.1

Q ss_pred             CCcEEEE--EccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFL--VGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L--~G~~GSGKSTlAk~LAe~L  117 (278)
                      .+..++|  +|++|+||||+++.+++.+
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            4567888  9999999999999999876

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=95.24  E-value=0.0086  Score=59.21  Aligned_cols=28  Identities=29%  Similarity=0.403  Sum_probs=25.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      .+..++|+|++|+||||+++.++..+..
T Consensus        59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           59 QKRHVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence            4679999999999999999999997753

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.24  E-value=0.011  Score=46.36  Aligned_cols=22  Identities=32%  Similarity=0.261  Sum_probs=20.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +.|+++|.+|+||||+...|..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~   23 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLK   23 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4799999999999999999975

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=95.24  E-value=0.0055  Score=56.00  Aligned_cols=28  Identities=11%  Similarity=0.173  Sum_probs=24.2

Q ss_pred             hhccCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           88 STELKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        88 ~~~~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ...++|..+.|+|++|+||||+.+.|+.
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcc
Confidence            3455799999999999999999999953

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.23  E-value=0.0071  Score=57.75  Aligned_cols=34  Identities=24%  Similarity=0.292  Sum_probs=27.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhC-----CceecCch
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDS  126 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~  126 (278)
                      +.+|+|+|++|+||||++..||..+.     ..+++.|.
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~  137 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT  137 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence            35899999999999999999998762     44677764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.16  E-value=0.012  Score=48.71  Aligned_cols=23  Identities=22%  Similarity=0.196  Sum_probs=20.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      ..|+|+|++|+||||+.+.|+..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999999763

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=95.16  E-value=0.0063  Score=50.58  Aligned_cols=26  Identities=27%  Similarity=0.199  Sum_probs=22.5

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHH
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      +.-.+..|+|+|.+||||||+.+.|+
T Consensus        22 ~~~~~~~v~lvG~~g~GKSTLl~~l~   47 (210)
T 1pui_A           22 PSDTGIEVAFAGRSNAGKSSALNTLT   47 (210)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHh
Confidence            33467889999999999999999885

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.15  E-value=0.012  Score=46.06  Aligned_cols=23  Identities=22%  Similarity=0.198  Sum_probs=20.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      ..|+++|.+|+||||+...|...
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999999753

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.15  E-value=0.012  Score=59.61  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=22.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHh
Q 023749           95 SVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .++|+|++|+|||++|+.|++.+
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            69999999999999999999987

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.15  E-value=0.021  Score=52.63  Aligned_cols=34  Identities=18%  Similarity=0.068  Sum_probs=26.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCc
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSD  125 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D  125 (278)
                      ...+|+|+|.+|+||||+...|+..+   |..  +++.|
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D  116 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD  116 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence            34589999999999999999999876   433  45555

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.13  E-value=0.013  Score=49.92  Aligned_cols=27  Identities=26%  Similarity=0.215  Sum_probs=23.2

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      |-..|..++|.|.||+|||++|..++.
T Consensus        26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           26 GFPEGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            456789999999999999999987653

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=95.11  E-value=0.013  Score=52.79  Aligned_cols=26  Identities=31%  Similarity=0.231  Sum_probs=23.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ++..|.++|++|+||||++..||..+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999765

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=95.09  E-value=0.015  Score=49.33  Aligned_cols=27  Identities=15%  Similarity=-0.148  Sum_probs=23.9

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      -+|+.++++|++||||||.+-.++.++
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            357899999999999999999888876

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.07  E-value=0.014  Score=55.55  Aligned_cols=28  Identities=11%  Similarity=-0.052  Sum_probs=24.9

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      -.+..|+|+|+.||||||+.+.|...+.
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            4677899999999999999999988774

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.03  E-value=0.012  Score=47.17  Aligned_cols=22  Identities=23%  Similarity=0.218  Sum_probs=20.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+.+.|..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            5799999999999999999964

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.02  E-value=0.014  Score=45.86  Aligned_cols=23  Identities=17%  Similarity=0.157  Sum_probs=20.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ...|+|+|.+|+||||+...|..
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHc
Confidence            35799999999999999998875

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.02  E-value=0.015  Score=45.88  Aligned_cols=22  Identities=14%  Similarity=0.132  Sum_probs=20.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+.+.|..
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~   27 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCK   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            4799999999999999999975

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=94.96  E-value=0.015  Score=54.18  Aligned_cols=38  Identities=18%  Similarity=0.184  Sum_probs=29.6

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCch
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS  126 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~  126 (278)
                      +-..|..+.|.|+|||||||++..++..+   |  ..|++...
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~   99 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH   99 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence            55578999999999999999999998764   3  23566543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=94.96  E-value=0.013  Score=47.48  Aligned_cols=24  Identities=25%  Similarity=0.250  Sum_probs=21.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+.+.|..
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            446899999999999999999975

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=94.93  E-value=0.015  Score=45.67  Aligned_cols=24  Identities=21%  Similarity=0.111  Sum_probs=21.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +...|+++|.+|+||||+...|..
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~   26 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHh
Confidence            345799999999999999999975

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.93  E-value=0.014  Score=57.14  Aligned_cols=25  Identities=36%  Similarity=0.341  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|.++.|+|++||||||+.+.|+-.
T Consensus        46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           46 EGMVVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999999753

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=94.92  E-value=0.019  Score=52.29  Aligned_cols=28  Identities=11%  Similarity=-0.008  Sum_probs=24.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      +..++|.|++|+|||++|+.+|+.+...
T Consensus        24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~   51 (334)
T 1a5t_A           24 HHALLIQALPGMGDDALIYALSRYLLCQ   51 (334)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred             ceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence            3468999999999999999999998754

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=94.90  E-value=0.014  Score=57.48  Aligned_cols=26  Identities=23%  Similarity=0.405  Sum_probs=23.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+.-+
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999999997643

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=94.85  E-value=0.068  Score=48.39  Aligned_cols=67  Identities=15%  Similarity=0.114  Sum_probs=38.7

Q ss_pred             CCcEEEEEcC-HHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccc-cCcEEEecCcccccccccCCCCCCHHHHHHHHHH
Q 023749          186 HGISLWIDVP-PGMVARM-DHSGFPESEVLPQLFALYKEMRDGYA-TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKW  262 (278)
Q Consensus       186 ~~~vV~L~a~-~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~-~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~  262 (278)
                      ..++|||..| .+++.+| .+++  .++ .+.+.....+.+..|. ..|.+|.|              -+.++++++|.+
T Consensus       210 ~pi~IFI~PpS~e~L~~r~~~r~--~e~-~~~~~~r~~k~e~e~~~~fD~vIvN--------------ddle~a~~~l~~  272 (292)
T 3tvt_A          210 YPVAVFIKPKSVDSVMEMNRRMT--EEQ-AKKTYERAIKMEQEFGEYFTGVVQG--------------DTIEEIYSKVKS  272 (292)
T ss_dssp             CCEEEEECCSCHHHHHHTCTTSC--TTH-HHHHHHHHHHHHHHHTTTCSEEECC--------------SSHHHHHHHHHH
T ss_pred             cceEEEEECCCHHHHHHHHhCCC--chh-HHHHHHHHHHHHHhhhhhCCEEEEC--------------cCHHHHHHHHHH
Confidence            4578999874 5667776 3332  222 2222222211122233 46888864              368999999999


Q ss_pred             HhhhcCC
Q 023749          263 LYNASIS  269 (278)
Q Consensus       263 ~i~~~~~  269 (278)
                      +|.+.-.
T Consensus       273 iI~~e~~  279 (292)
T 3tvt_A          273 MIWSQSG  279 (292)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhhC
Confidence            9975543

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=94.84  E-value=0.014  Score=53.52  Aligned_cols=37  Identities=19%  Similarity=0.247  Sum_probs=31.0

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV  128 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li  128 (278)
                      ..|.-|+|+|.+|+||||+|-.|.+ .|+.++.-|.+.
T Consensus       145 ~~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~  181 (312)
T 1knx_A          145 VFGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIE  181 (312)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEE
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEE
Confidence            4688899999999999999999976 699888755543

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=94.83  E-value=0.016  Score=54.80  Aligned_cols=27  Identities=26%  Similarity=0.107  Sum_probs=23.0

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +--.|..+.|+|++||||||++..|+-
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~  200 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAV  200 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence            333688999999999999999997764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=94.82  E-value=0.013  Score=57.67  Aligned_cols=26  Identities=23%  Similarity=0.382  Sum_probs=23.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+.-+
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            68999999999999999999997643

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=94.77  E-value=0.02  Score=53.01  Aligned_cols=37  Identities=14%  Similarity=0.157  Sum_probs=28.9

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCc
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSD  125 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D  125 (278)
                      +-..|..+.|.|+|||||||++..++...   |  ..|++.+
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E   98 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE   98 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            44578999999999999999999998643   2  4466654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=94.76  E-value=0.022  Score=46.50  Aligned_cols=24  Identities=29%  Similarity=0.325  Sum_probs=21.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+...|..
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~   70 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTT   70 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            345899999999999999999975

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=94.71  E-value=0.015  Score=47.55  Aligned_cols=22  Identities=27%  Similarity=0.285  Sum_probs=19.8

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+.+.|+.
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4699999999999999999864

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=94.70  E-value=0.022  Score=45.53  Aligned_cols=24  Identities=21%  Similarity=0.163  Sum_probs=21.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +...|+|+|.+|+||||+...|..
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            466899999999999999999864

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=94.67  E-value=0.019  Score=45.21  Aligned_cols=23  Identities=13%  Similarity=0.147  Sum_probs=20.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ...|+++|.+|+||||+.+.|..
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            35799999999999999999975

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.65  E-value=0.026  Score=58.04  Aligned_cols=29  Identities=31%  Similarity=0.304  Sum_probs=25.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHh---CCcee
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYF  122 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~L---g~~~i  122 (278)
                      ..++|+|++|+|||++|+.|++.+   +.+++
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i  620 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMI  620 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEE
Confidence            379999999999999999999988   55543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.65  E-value=0.023  Score=47.42  Aligned_cols=26  Identities=27%  Similarity=0.269  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ....|+|+|++|+||||+...|....
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999998643

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=94.61  E-value=0.015  Score=56.75  Aligned_cols=26  Identities=19%  Similarity=0.066  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|..|+|+|++||||||+.+.|+..+
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            57789999999999999999998655

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.61  E-value=0.022  Score=44.85  Aligned_cols=22  Identities=14%  Similarity=0.125  Sum_probs=19.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999998865

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=94.58  E-value=0.02  Score=45.27  Aligned_cols=21  Identities=24%  Similarity=0.398  Sum_probs=19.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      ..|+|+|.+|+||||+.+.|.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            479999999999999999884

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.58  E-value=0.019  Score=55.66  Aligned_cols=23  Identities=22%  Similarity=0.203  Sum_probs=21.1

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFL  113 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~L  113 (278)
                      -+|..+.|+|++||||||+++.+
T Consensus        37 ~~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           37 PIGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHH
Confidence            37899999999999999999993

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=94.56  E-value=0.026  Score=51.14  Aligned_cols=30  Identities=13%  Similarity=-0.005  Sum_probs=26.1

Q ss_pred             hhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           88 STELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        88 ~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      -+-..|..++|.|.||+||||++..++...
T Consensus        63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           63 YGYKRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             SSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            356679999999999999999999998654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=94.55  E-value=0.022  Score=45.16  Aligned_cols=21  Identities=29%  Similarity=0.317  Sum_probs=19.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      ..|+|+|.+|+||||+...|.
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999999985

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=94.55  E-value=0.023  Score=44.82  Aligned_cols=24  Identities=17%  Similarity=0.115  Sum_probs=20.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      ...|+|+|.+|+||||+.+.|...
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            357999999999999999999753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=94.54  E-value=0.023  Score=45.38  Aligned_cols=23  Identities=22%  Similarity=0.140  Sum_probs=20.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ...|+|+|.+|+||||+...|..
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~   30 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVN   30 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHh
Confidence            35799999999999999998865

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.53  E-value=0.022  Score=44.94  Aligned_cols=22  Identities=18%  Similarity=0.089  Sum_probs=19.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+++|.+|+||||+...|..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            4799999999999999999864

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=94.52  E-value=0.022  Score=45.30  Aligned_cols=22  Identities=32%  Similarity=0.342  Sum_probs=19.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+.+.|..
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCccHHHHHHHHhc
Confidence            4799999999999999998863

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=94.52  E-value=0.024  Score=44.87  Aligned_cols=22  Identities=27%  Similarity=0.155  Sum_probs=20.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCE   28 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHc
Confidence            4799999999999999999975

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=94.52  E-value=0.023  Score=52.10  Aligned_cols=26  Identities=15%  Similarity=0.043  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .+..|.|+|++|+||||+...|+..+
T Consensus        55 ~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           55 NTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57789999999999999999998754

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=94.50  E-value=0.025  Score=52.33  Aligned_cols=33  Identities=12%  Similarity=0.043  Sum_probs=28.3

Q ss_pred             hhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           86 DISTELKGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        86 ~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      .+.+--+|.++.|+|++|+||||+.+.|+..+.
T Consensus        64 ~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           64 GLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             HHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             eeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            445555899999999999999999999998764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=94.50  E-value=0.024  Score=44.73  Aligned_cols=22  Identities=18%  Similarity=0.230  Sum_probs=19.8

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            4699999999999999999874

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=94.48  E-value=0.011  Score=58.49  Aligned_cols=29  Identities=10%  Similarity=0.324  Sum_probs=25.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      .|+|+|+||+|||++|+.+++.++...+.
T Consensus       329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~  357 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISRVAPRAVYT  357 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred             ceEEECCCchHHHHHHHHHHHhCCCceec
Confidence            79999999999999999999988755443

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=94.46  E-value=0.023  Score=54.27  Aligned_cols=34  Identities=21%  Similarity=0.088  Sum_probs=28.8

Q ss_pred             HhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      ..+.+--+|..+.|+|++||||||+.+.|+....
T Consensus       149 d~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          149 NALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             HHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             eeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            3455656899999999999999999999998663

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=94.44  E-value=0.025  Score=45.14  Aligned_cols=22  Identities=23%  Similarity=0.166  Sum_probs=20.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            4799999999999999999964

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=94.44  E-value=0.027  Score=44.61  Aligned_cols=23  Identities=22%  Similarity=0.254  Sum_probs=20.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ...|+|+|.+|+||||+...|..
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            45799999999999999999964

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=94.42  E-value=0.028  Score=48.44  Aligned_cols=34  Identities=29%  Similarity=0.346  Sum_probs=26.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh--CCc--eecCc
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL--RYY--YFDSD  125 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L--g~~--~iD~D  125 (278)
                      +...++++|.+|+||||++..|+..+  |..  .+|.|
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D   50 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD   50 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            45678889999999999999999766  433  46666

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=94.42  E-value=0.022  Score=55.73  Aligned_cols=25  Identities=40%  Similarity=0.420  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|.++.|+|+.||||||+.+.|+..
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl  335 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGV  335 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999999864

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=94.42  E-value=0.025  Score=45.97  Aligned_cols=26  Identities=19%  Similarity=0.202  Sum_probs=22.2

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +....|+++|.+|+||||+...|...
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcC
Confidence            34468999999999999999999753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.40  E-value=0.019  Score=56.29  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+..
T Consensus       293 ~Gei~~i~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          293 EGEIIGILGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999999763

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=94.38  E-value=0.026  Score=45.02  Aligned_cols=25  Identities=16%  Similarity=0.159  Sum_probs=21.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      ....|+|+|.+|+||||+...|...
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3458999999999999999999764

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=94.38  E-value=0.039  Score=52.47  Aligned_cols=23  Identities=35%  Similarity=0.407  Sum_probs=21.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHh
Q 023749           95 SVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .++|.|++||||||++..++..+
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999877

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.38  E-value=0.018  Score=56.46  Aligned_cols=25  Identities=32%  Similarity=0.276  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+..
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            5889999999999999999999753

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=94.37  E-value=0.019  Score=51.91  Aligned_cols=34  Identities=24%  Similarity=0.133  Sum_probs=27.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCch
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS  126 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~  126 (278)
                      +..|+++|++|+||||++..||..+   |  ..++|.|.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~  136 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV  136 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            6789999999999999999999766   3  33567663

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=94.35  E-value=0.027  Score=44.28  Aligned_cols=22  Identities=18%  Similarity=0.137  Sum_probs=20.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            4799999999999999999975

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=94.34  E-value=0.03  Score=45.60  Aligned_cols=24  Identities=21%  Similarity=0.145  Sum_probs=21.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+...|..
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            457899999999999999999864

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=94.34  E-value=0.019  Score=52.15  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      ..++|+|+.||||||+.+.|...
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cEEEEEecCCCCHHHHHHHHHhh
Confidence            47889999999999999999853

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=94.34  E-value=0.025  Score=51.34  Aligned_cols=29  Identities=21%  Similarity=0.013  Sum_probs=25.0

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +-..|..+.|.|+||+||||++..++...
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            34468899999999999999999998764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.34  E-value=0.023  Score=56.51  Aligned_cols=25  Identities=36%  Similarity=0.308  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+..
T Consensus       102 ~Gei~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          102 PGQVLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcC
Confidence            6999999999999999999999863

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=94.33  E-value=0.027  Score=45.38  Aligned_cols=22  Identities=18%  Similarity=0.096  Sum_probs=20.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999999975

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=94.32  E-value=0.024  Score=45.20  Aligned_cols=21  Identities=19%  Similarity=0.181  Sum_probs=19.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      ..|+|+|.+|+||||+...|.
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~   30 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFA   30 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            479999999999999999885

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=94.29  E-value=0.031  Score=44.02  Aligned_cols=22  Identities=27%  Similarity=0.286  Sum_probs=19.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|+++|.+|+||||+...|...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=94.29  E-value=0.021  Score=54.53  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=21.2

Q ss_pred             CCcE--EEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTS--VFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~--I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|..  +.|+|++||||||+.+.|+.
T Consensus        39 ~Gei~~vaLvG~nGaGKSTLln~L~G   64 (427)
T 2qag_B           39 QGFCFNILCVGETGLGKSTLMDTLFN   64 (427)
T ss_dssp             -CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhC
Confidence            5777  99999999999999999965

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=94.28  E-value=0.029  Score=44.69  Aligned_cols=23  Identities=13%  Similarity=0.104  Sum_probs=20.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      ..|+|+|.+|+||||+...|...
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            57999999999999999999753

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.25  E-value=0.016  Score=57.25  Aligned_cols=25  Identities=32%  Similarity=0.331  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+.-
T Consensus       380 ~G~~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          380 PGQKVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             TTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            5899999999999999999999753

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=94.24  E-value=0.029  Score=45.16  Aligned_cols=22  Identities=23%  Similarity=0.238  Sum_probs=20.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~   26 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQ   26 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999999975

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=94.23  E-value=0.031  Score=51.97  Aligned_cols=36  Identities=22%  Similarity=0.136  Sum_probs=29.2

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecC
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDS  124 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~  124 (278)
                      +-..|..+.|.|+||+||||+|..++...   |  ..|+|+
T Consensus        59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~   99 (356)
T 1u94_A           59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   99 (356)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            45578999999999999999999988653   3  446776

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=94.21  E-value=0.023  Score=45.70  Aligned_cols=24  Identities=21%  Similarity=0.083  Sum_probs=20.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+...|..
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHc
Confidence            345799999999999999999875

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=94.20  E-value=0.03  Score=45.32  Aligned_cols=24  Identities=17%  Similarity=0.141  Sum_probs=21.2

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      ...|+|+|.+|+||||+...|...
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            457999999999999999999764

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=94.18  E-value=0.04  Score=52.36  Aligned_cols=40  Identities=20%  Similarity=0.192  Sum_probs=32.7

Q ss_pred             HHHHHHHHhhh-hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           78 FAVKKKAADIS-TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        78 ~~~~~~~~~~~-~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ...=-|+.++. +--+|..+.|+|++|+||||+++.|+...
T Consensus       158 ~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          158 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             THHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             ccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            44555667666 66689999999999999999999998754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=94.18  E-value=0.031  Score=44.84  Aligned_cols=24  Identities=21%  Similarity=0.111  Sum_probs=21.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+...|..
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~   40 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMY   40 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhh
Confidence            446899999999999999999975

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=94.18  E-value=0.03  Score=45.52  Aligned_cols=23  Identities=26%  Similarity=0.265  Sum_probs=20.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ...|+|+|.+|+||||+.+.|..
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~   29 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAK   29 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHhc
Confidence            35799999999999999999976

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.18  E-value=0.022  Score=56.60  Aligned_cols=25  Identities=40%  Similarity=0.345  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+-.
T Consensus       116 ~Ge~~~LiG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          116 DGMVVGIVGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCC
Confidence            6889999999999999999999753

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=94.17  E-value=0.028  Score=51.58  Aligned_cols=27  Identities=19%  Similarity=-0.063  Sum_probs=23.8

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      --.|..+.|+|++||||||++..++..
T Consensus       119 l~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          119 IESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            336789999999999999999999876

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=94.16  E-value=0.029  Score=44.79  Aligned_cols=23  Identities=22%  Similarity=0.261  Sum_probs=20.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ...|+|+|.+|+||||+...|..
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHh
Confidence            35799999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=94.16  E-value=0.027  Score=56.06  Aligned_cols=25  Identities=40%  Similarity=0.420  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|+.||||||+.+.|+..
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~Gl  405 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLAGV  405 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999999863

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=94.15  E-value=0.031  Score=44.45  Aligned_cols=23  Identities=17%  Similarity=0.070  Sum_probs=20.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ...|+|+|.+|+||||+...|..
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            35799999999999999999974

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=94.13  E-value=0.03  Score=53.42  Aligned_cols=35  Identities=26%  Similarity=0.201  Sum_probs=27.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCch
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS  126 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~  126 (278)
                      .+.+|+++|++|+||||++..||..+   |  ..+++.|.
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~  136 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT  136 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence            47789999999999999999999876   3  23456664

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=94.12  E-value=0.014  Score=57.38  Aligned_cols=26  Identities=31%  Similarity=0.425  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+.-+
T Consensus       366 ~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          366 KGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            68999999999999999999996533

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=94.11  E-value=0.03  Score=45.23  Aligned_cols=22  Identities=23%  Similarity=0.256  Sum_probs=19.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3689999999999999999864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.10  E-value=0.032  Score=54.15  Aligned_cols=29  Identities=17%  Similarity=0.134  Sum_probs=25.0

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +--+|..+.|.|++||||||+++.++..+
T Consensus       277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          277 GFFKDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34478999999999999999999998654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=94.10  E-value=0.032  Score=44.97  Aligned_cols=22  Identities=14%  Similarity=0.160  Sum_probs=20.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+.+.|..
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~   32 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIE   32 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            4799999999999999999975

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=94.10  E-value=0.036  Score=52.78  Aligned_cols=29  Identities=10%  Similarity=0.055  Sum_probs=25.0

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +--.|..++|.|.||+||||++..++...
T Consensus       199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          199 GFQRSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             SBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            55578999999999999999999988643

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=94.09  E-value=0.028  Score=45.54  Aligned_cols=23  Identities=17%  Similarity=0.056  Sum_probs=20.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      ..|+|+|.+|+||||+.+.|...
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~   37 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSK   37 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHhh
Confidence            47999999999999999888654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=94.07  E-value=0.034  Score=44.98  Aligned_cols=25  Identities=28%  Similarity=0.182  Sum_probs=21.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      ....|+|+|.+|+||||+...|...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcC
Confidence            3458999999999999999998653

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=94.06  E-value=0.047  Score=53.85  Aligned_cols=27  Identities=26%  Similarity=0.121  Sum_probs=23.6

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +....++|+|+||+||||+.+.+...+
T Consensus       202 ~~~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          202 AGHRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             TTCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HhCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999998754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=94.05  E-value=0.031  Score=49.10  Aligned_cols=24  Identities=33%  Similarity=0.184  Sum_probs=21.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+...|..
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g   25 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTG   25 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhC
Confidence            346899999999999999999964

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=94.04  E-value=0.034  Score=44.80  Aligned_cols=25  Identities=20%  Similarity=0.139  Sum_probs=21.7

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .....|+|+|.+|+||||+...|..
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~   40 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQ   40 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            3456899999999999999999975

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=94.03  E-value=0.043  Score=53.38  Aligned_cols=24  Identities=17%  Similarity=0.140  Sum_probs=21.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ...+|.|+|+.|.||||+|+.++.
T Consensus       151 ~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          151 DSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            357899999999999999999995

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=94.01  E-value=0.035  Score=45.69  Aligned_cols=24  Identities=33%  Similarity=0.483  Sum_probs=20.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +...|+++|.+|+||||+.+.+..
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            345899999999999999999975

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=94.00  E-value=0.03  Score=50.47  Aligned_cols=28  Identities=11%  Similarity=-0.085  Sum_probs=24.3

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +-..|..+.|.|+||+|||+++..++..
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3446889999999999999999999865

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.99  E-value=0.035  Score=44.38  Aligned_cols=22  Identities=36%  Similarity=0.247  Sum_probs=20.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~   32 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKD   32 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            4799999999999999999965

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=93.99  E-value=0.034  Score=45.34  Aligned_cols=22  Identities=27%  Similarity=0.240  Sum_probs=20.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~   47 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTR   47 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhc
Confidence            4799999999999999999975

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=93.98  E-value=0.04  Score=51.42  Aligned_cols=38  Identities=16%  Similarity=0.163  Sum_probs=29.4

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCch
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS  126 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~  126 (278)
                      +...|..|.|.|+||+||||+|..++...   |  ..|++++.
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~  112 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH  112 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            45578999999999999999999888653   3  44666543

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=93.98  E-value=0.024  Score=53.90  Aligned_cols=24  Identities=17%  Similarity=0.079  Sum_probs=21.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .+..+.|+|++||||||+.+.|+.
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhC
Confidence            455899999999999999999975

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=93.98  E-value=0.019  Score=56.72  Aligned_cols=26  Identities=19%  Similarity=0.313  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+.-+
T Consensus       368 ~Ge~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          368 PGSLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            58999999999999999999997543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=93.98  E-value=0.036  Score=44.39  Aligned_cols=23  Identities=22%  Similarity=0.161  Sum_probs=20.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ...|+|+|.+|+||||+...|..
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~   34 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVK   34 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHc
Confidence            35799999999999999999865

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=93.96  E-value=0.031  Score=54.44  Aligned_cols=34  Identities=21%  Similarity=0.218  Sum_probs=26.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCch
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDS  126 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~  126 (278)
                      +.+|+|+|.+|+||||++..|+..+   |..  +++.|.
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~  139 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT  139 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence            4589999999999999999999765   543  466654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=93.90  E-value=0.033  Score=47.76  Aligned_cols=24  Identities=25%  Similarity=0.295  Sum_probs=21.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+...|..
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHcC
Confidence            456899999999999999999864

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.90  E-value=0.026  Score=45.40  Aligned_cols=23  Identities=26%  Similarity=0.332  Sum_probs=20.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      ....|+|+|.+|+||||+...|.
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CccEEEEECCCCCCHHHHHHHHh
Confidence            35689999999999999998874

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=93.86  E-value=0.039  Score=51.13  Aligned_cols=28  Identities=14%  Similarity=0.046  Sum_probs=24.5

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ...+.+++++|++||||||+.+.+...+
T Consensus        32 ~~~~~~~~i~G~~G~GKs~~~~~~~~~~   59 (392)
T 4ag6_A           32 DRTNSNWTILAKPGAGKSFTAKMLLLRE   59 (392)
T ss_dssp             TBCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccccCceEEEcCCCCCHHHHHHHHHHHH
Confidence            3578899999999999999999998654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=93.85  E-value=0.035  Score=45.52  Aligned_cols=25  Identities=24%  Similarity=0.159  Sum_probs=21.6

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .....|+|+|.+|+||||+...|..
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~   36 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMY   36 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHh
Confidence            3456899999999999999999875

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=93.84  E-value=0.046  Score=52.84  Aligned_cols=34  Identities=24%  Similarity=0.163  Sum_probs=29.3

Q ss_pred             HHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        84 ~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +..+.+.++|.++.|.|++|+||||+++.|+...
T Consensus       142 ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~  175 (473)
T 1sky_E          142 VDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNI  175 (473)
T ss_dssp             HHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred             HHHHhhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence            4556688899999999999999999999887654

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=93.83  E-value=0.037  Score=52.79  Aligned_cols=34  Identities=24%  Similarity=0.196  Sum_probs=27.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh----CCc--eecCch
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL----RYY--YFDSDS  126 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L----g~~--~iD~D~  126 (278)
                      +.+|+++|..|+||||++..||..+    |..  ++|+|.
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~  139 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV  139 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence            5689999999999999999999765    444  467774

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=93.79  E-value=0.04  Score=44.81  Aligned_cols=22  Identities=27%  Similarity=0.246  Sum_probs=20.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~   38 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFAD   38 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHc
Confidence            4799999999999999999975

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.79  E-value=0.042  Score=44.91  Aligned_cols=25  Identities=20%  Similarity=0.109  Sum_probs=21.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ...|+|+|.+|+||||+...|...-
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcCC
Confidence            3579999999999999999998653

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=93.77  E-value=0.038  Score=44.42  Aligned_cols=23  Identities=13%  Similarity=0.239  Sum_probs=20.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ...|+|+|.+|+||||+...|..
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            35799999999999999999874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=93.75  E-value=0.036  Score=55.20  Aligned_cols=25  Identities=36%  Similarity=0.391  Sum_probs=22.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|..+.|+|++||||||+.+.|+..
T Consensus       377 ~GEiv~iiG~NGsGKSTLlk~l~Gl  401 (608)
T 3j16_B          377 DSEILVMMGENGTGKTTLIKLLAGA  401 (608)
T ss_dssp             TTCEEEEESCTTSSHHHHHHHHHTS
T ss_pred             cceEEEEECCCCCcHHHHHHHHhcC
Confidence            3578999999999999999999763

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=93.75  E-value=0.035  Score=45.85  Aligned_cols=24  Identities=21%  Similarity=0.279  Sum_probs=21.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+...|..
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~   46 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVE   46 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHh
Confidence            456899999999999999999975

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=93.74  E-value=0.048  Score=43.61  Aligned_cols=24  Identities=21%  Similarity=-0.016  Sum_probs=21.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+...+..
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhc
Confidence            456899999999999999999875

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=93.73  E-value=0.041  Score=45.23  Aligned_cols=24  Identities=21%  Similarity=0.141  Sum_probs=20.8

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      ...|+|+|.+|+||||+...|...
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            357999999999999999999653

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=93.68  E-value=0.039  Score=44.95  Aligned_cols=24  Identities=42%  Similarity=0.517  Sum_probs=20.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+.+.|..
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~   38 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLAS   38 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhc
Confidence            346899999999999999999864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=93.67  E-value=0.039  Score=45.20  Aligned_cols=25  Identities=20%  Similarity=-0.036  Sum_probs=21.5

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .+...|+|+|.+|+||||+...+..
T Consensus        18 ~~~~ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           18 GPELKVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             CCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc
Confidence            4456899999999999999988765

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=93.66  E-value=0.041  Score=44.52  Aligned_cols=24  Identities=25%  Similarity=0.384  Sum_probs=21.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+++|.+|+||||+...|..
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhc
Confidence            456899999999999999999864

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.66  E-value=0.046  Score=44.55  Aligned_cols=23  Identities=17%  Similarity=0.121  Sum_probs=20.8

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ...|+|+|.+|+||||+...|..
T Consensus         8 ~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            8 DYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHc
Confidence            45899999999999999999975

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.65  E-value=0.046  Score=44.86  Aligned_cols=24  Identities=13%  Similarity=0.036  Sum_probs=21.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+...|..
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~   50 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLT   50 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            456899999999999999999976

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=93.65  E-value=0.043  Score=44.64  Aligned_cols=22  Identities=27%  Similarity=0.218  Sum_probs=20.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~   44 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYAD   44 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            4799999999999999999875

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=93.64  E-value=0.043  Score=44.96  Aligned_cols=23  Identities=17%  Similarity=0.111  Sum_probs=20.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ...|+|+|.+|+||||+...|..
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~   45 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQ   45 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhc
Confidence            35799999999999999999975

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=93.64  E-value=0.048  Score=47.34  Aligned_cols=27  Identities=11%  Similarity=-0.166  Sum_probs=23.6

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      -.|+..+++|++||||||.+-.++.++
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~   52 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRT   52 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            357889999999999999998888766

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=93.61  E-value=0.045  Score=44.35  Aligned_cols=24  Identities=17%  Similarity=0.230  Sum_probs=21.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+...|..
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~   37 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTD   37 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc
Confidence            346899999999999999999975

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=93.61  E-value=0.04  Score=45.72  Aligned_cols=24  Identities=33%  Similarity=0.401  Sum_probs=21.0

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      .+...|+|+|.+|+||||+.+.|.
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~   46 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLK   46 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHh
Confidence            445689999999999999999885

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=93.58  E-value=0.034  Score=44.54  Aligned_cols=24  Identities=13%  Similarity=-0.002  Sum_probs=21.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+...|..
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~   29 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLT   29 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            345799999999999999999976

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=93.57  E-value=0.046  Score=44.51  Aligned_cols=23  Identities=22%  Similarity=0.154  Sum_probs=20.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ...|+|+|.+|+||||+...|..
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            45899999999999999999865

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=93.53  E-value=0.03  Score=55.61  Aligned_cols=31  Identities=13%  Similarity=0.204  Sum_probs=25.1

Q ss_pred             HhhhhccCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           85 ADISTELKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..+...+.-..|+|+|++||||||+.+.|+.
T Consensus        37 ~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~G   67 (608)
T 3szr_A           37 LGVEQDLALPAIAVIGDQSSGKSSVLEALSG   67 (608)
T ss_dssp             HSCCSSCCCCCEECCCCTTSCHHHHHHHHHS
T ss_pred             CCCCCcccCCeEEEECCCCChHHHHHHHHhC
Confidence            3344456666799999999999999999975

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=93.50  E-value=0.044  Score=45.05  Aligned_cols=22  Identities=23%  Similarity=0.220  Sum_probs=19.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=93.49  E-value=0.048  Score=44.65  Aligned_cols=24  Identities=17%  Similarity=0.116  Sum_probs=21.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+...|..
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~   43 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLT   43 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHh
Confidence            345899999999999999998875

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=93.47  E-value=0.048  Score=44.95  Aligned_cols=24  Identities=21%  Similarity=0.145  Sum_probs=20.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+...|..
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~   50 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCK   50 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHh
Confidence            346899999999999999999975

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=93.47  E-value=0.048  Score=44.48  Aligned_cols=23  Identities=26%  Similarity=0.317  Sum_probs=20.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ...|+|+|.+|+||||+...|..
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHc
Confidence            35799999999999999999975

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=93.45  E-value=0.35  Score=43.56  Aligned_cols=24  Identities=13%  Similarity=0.187  Sum_probs=20.5

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      -.++.|+|+||   ||+|+.+.|-+.+
T Consensus       103 ~~~r~ivl~GP---gK~tl~~~L~~~~  126 (295)
T 1kjw_A          103 HYARPIIILGP---TKDRANDDLLSEF  126 (295)
T ss_dssp             CSCCCEEEEST---THHHHHHHHHHHC
T ss_pred             CCCCEEEEECC---CHHHHHHHHHhhC
Confidence            35788999998   7999999998865

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=93.45  E-value=0.049  Score=44.49  Aligned_cols=22  Identities=18%  Similarity=0.144  Sum_probs=20.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~   43 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTD   43 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhc
Confidence            4799999999999999999975

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=93.42  E-value=0.05  Score=44.48  Aligned_cols=24  Identities=25%  Similarity=0.188  Sum_probs=21.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+...|..
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~   45 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSK   45 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhc
Confidence            446899999999999999999975

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.42  E-value=0.049  Score=44.25  Aligned_cols=24  Identities=29%  Similarity=0.329  Sum_probs=21.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+...|..
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            466899999999999999999974

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=93.41  E-value=0.051  Score=45.14  Aligned_cols=25  Identities=28%  Similarity=0.244  Sum_probs=20.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      ....|+|+|.+|+||||+...|...
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3568999999999999999999763

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=93.41  E-value=0.054  Score=51.36  Aligned_cols=28  Identities=18%  Similarity=0.046  Sum_probs=24.6

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +-..|..++|+|.||+||||++..++..
T Consensus       196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~  223 (444)
T 2q6t_A          196 TLGPGSLNIIAARPAMGKTAFALTIAQN  223 (444)
T ss_dssp             CCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            5557889999999999999999998864

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=93.40  E-value=0.039  Score=44.95  Aligned_cols=24  Identities=21%  Similarity=0.243  Sum_probs=20.7

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      .....|+|+|.+|+||||+...|.
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~   38 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVK   38 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHh
Confidence            456689999999999999999885

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=93.40  E-value=0.045  Score=44.34  Aligned_cols=24  Identities=29%  Similarity=0.329  Sum_probs=20.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +...|+|+|.+|+||||+...|..
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~   43 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSM   43 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Confidence            356899999999999999999964

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=93.40  E-value=0.049  Score=45.65  Aligned_cols=23  Identities=26%  Similarity=0.265  Sum_probs=20.8

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ...|+|+|.+|+||||+.+.|..
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~   50 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAK   50 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Confidence            35799999999999999999976

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=93.37  E-value=0.05  Score=44.89  Aligned_cols=22  Identities=23%  Similarity=0.238  Sum_probs=20.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999999865

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=93.34  E-value=0.047  Score=44.94  Aligned_cols=23  Identities=30%  Similarity=0.348  Sum_probs=20.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      +...|+|+|.+|+||||+...|.
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CccEEEEECCCCCCHHHHHHHHH
Confidence            45689999999999999999884

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=93.33  E-value=0.055  Score=43.62  Aligned_cols=26  Identities=23%  Similarity=0.221  Sum_probs=21.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .+...+|+|+.||||||+..++.=.|
T Consensus        22 ~~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           22 KEGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34578899999999999999887555

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=93.31  E-value=0.052  Score=45.42  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=20.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+.+.|..
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~   48 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQ   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            4799999999999999999875

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=93.24  E-value=0.045  Score=53.08  Aligned_cols=24  Identities=29%  Similarity=0.088  Sum_probs=21.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHh
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ..+.|+|++||||||+.+.|+.-+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCC
Confidence            688999999999999999998755

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=93.20  E-value=0.055  Score=53.62  Aligned_cols=28  Identities=25%  Similarity=0.082  Sum_probs=23.4

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .+.+..+++.|++|+||||+...+...+
T Consensus       161 ~l~~~~~vi~G~pGTGKTt~l~~ll~~l  188 (608)
T 1w36_D          161 ALTRRISVISGGPGTGKTTTVAKLLAAL  188 (608)
T ss_dssp             HHTBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             HhcCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence            3578899999999999999888776554

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=93.20  E-value=0.053  Score=46.95  Aligned_cols=25  Identities=20%  Similarity=0.240  Sum_probs=21.3

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .....|+|+|.+|+||||+...|..
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~   44 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILR   44 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhC
Confidence            3456899999999999999999964

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=93.19  E-value=0.066  Score=49.48  Aligned_cols=29  Identities=21%  Similarity=-0.009  Sum_probs=25.6

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +...|..|+|.|.||+||||++..+|...
T Consensus        42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~   70 (338)
T 4a1f_A           42 GFNKGSLVIIGARPSMGKTSLMMNMVLSA   70 (338)
T ss_dssp             SBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            66678999999999999999999998753

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.19  E-value=0.057  Score=44.55  Aligned_cols=23  Identities=17%  Similarity=0.156  Sum_probs=20.8

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ...|+|+|.+|+||||+...|..
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            56899999999999999999874

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.17  E-value=0.056  Score=44.89  Aligned_cols=23  Identities=22%  Similarity=0.170  Sum_probs=20.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ...|+|+|.+|+||||+...|..
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHhc
Confidence            45899999999999999999975

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=93.16  E-value=0.041  Score=45.57  Aligned_cols=21  Identities=29%  Similarity=0.317  Sum_probs=19.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      ..|+|+|.+|+||||+.+.|.
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999884

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=93.16  E-value=0.049  Score=57.13  Aligned_cols=24  Identities=21%  Similarity=0.229  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|.++.|+|++||||||+.+.|+.
T Consensus       460 ~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          460 RARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            688999999999999999999984

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=93.14  E-value=0.054  Score=44.83  Aligned_cols=23  Identities=13%  Similarity=0.101  Sum_probs=20.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ...|+|+|.+|+||||+.+.|..
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            35799999999999999999863

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=93.14  E-value=0.048  Score=52.86  Aligned_cols=24  Identities=21%  Similarity=0.081  Sum_probs=21.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|.|+|++|+||||+++.++.
T Consensus       146 ~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          146 EPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Confidence            356899999999999999999863

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=93.11  E-value=0.052  Score=44.53  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=19.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999999853

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=93.11  E-value=0.058  Score=44.82  Aligned_cols=25  Identities=20%  Similarity=0.021  Sum_probs=21.0

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .....|+|+|.+|+||||+...+..
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHh
Confidence            3467899999999999999998875

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=93.07  E-value=0.057  Score=44.30  Aligned_cols=24  Identities=29%  Similarity=0.259  Sum_probs=20.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+...|..
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            456899999999999999998864

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=93.07  E-value=0.048  Score=49.12  Aligned_cols=22  Identities=23%  Similarity=0.119  Sum_probs=19.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|++|+||||+.+.|..
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHhC
Confidence            4579999999999999999853

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=93.04  E-value=0.06  Score=44.47  Aligned_cols=22  Identities=23%  Similarity=0.208  Sum_probs=20.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~   47 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSK   47 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999999976

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=93.02  E-value=0.065  Score=46.98  Aligned_cols=32  Identities=22%  Similarity=-0.085  Sum_probs=25.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHh---CCc--eecCch
Q 023749           95 SVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDS  126 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~  126 (278)
                      +|++.|.+|+||||++-.+|..+   |+.  +++.|.
T Consensus         8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~   44 (228)
T 2r8r_A            8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET   44 (228)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            58889999999999988888665   655  457763

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=93.00  E-value=0.063  Score=43.78  Aligned_cols=23  Identities=26%  Similarity=0.111  Sum_probs=20.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      ..|+|+|.+|+||||+...|...
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999999764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=92.97  E-value=0.035  Score=44.74  Aligned_cols=22  Identities=18%  Similarity=0.159  Sum_probs=10.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999998864

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=92.95  E-value=0.057  Score=45.71  Aligned_cols=24  Identities=17%  Similarity=0.279  Sum_probs=20.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+...|..
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            356899999999999999999854

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=92.91  E-value=0.055  Score=50.33  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=20.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      +...|+|.|.+||||||++|.+.
T Consensus        32 ~~~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           32 RLVKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CccEEEEECCCCCcHHHHHHHHH
Confidence            35689999999999999999984

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=92.90  E-value=0.061  Score=44.77  Aligned_cols=22  Identities=18%  Similarity=0.114  Sum_probs=19.8

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHhc
Confidence            4799999999999999999864

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=92.88  E-value=0.066  Score=44.40  Aligned_cols=22  Identities=23%  Similarity=0.150  Sum_probs=20.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus        30 ~ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           30 FKLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhh
Confidence            4799999999999999999964

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=92.86  E-value=0.12  Score=45.38  Aligned_cols=26  Identities=19%  Similarity=0.180  Sum_probs=22.3

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ......|+|+|.+|+||||+...|..
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g   48 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHC
Confidence            34566899999999999999999964

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=92.82  E-value=0.05  Score=44.29  Aligned_cols=24  Identities=29%  Similarity=0.335  Sum_probs=20.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+...|..
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~   43 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKP   43 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            346899999999999999998854

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=92.78  E-value=0.064  Score=44.93  Aligned_cols=24  Identities=38%  Similarity=0.382  Sum_probs=20.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+...|..
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            346899999999999999999864

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=92.76  E-value=0.077  Score=50.59  Aligned_cols=29  Identities=14%  Similarity=0.016  Sum_probs=25.4

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      |...|..|+|.|.||+||||++..+|...
T Consensus       193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~  221 (444)
T 3bgw_A          193 GYKRRNFVLIAARPSMGKTAFALKQAKNM  221 (444)
T ss_dssp             SBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence            55678999999999999999999888754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=92.71  E-value=0.068  Score=44.11  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      ..|+|+|.+|+||||+...+...
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999999753

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=92.70  E-value=0.072  Score=44.15  Aligned_cols=23  Identities=17%  Similarity=-0.044  Sum_probs=20.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ...|+|+|.+|+||||+...|..
T Consensus         9 ~~ki~i~G~~~~GKTsli~~l~~   31 (212)
T 2j0v_A            9 FIKCVTVGDGAVGKTCMLICYTS   31 (212)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            35799999999999999999875

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=92.67  E-value=0.12  Score=45.78  Aligned_cols=37  Identities=19%  Similarity=0.222  Sum_probs=27.4

Q ss_pred             HHHHHHHhhhh-----ccCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           79 AVKKKAADIST-----ELKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        79 ~~~~~~~~~~~-----~~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .+.++.+++..     .+....|+|+|.+|+||||+...|..
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g   46 (315)
T 1jwy_B            5 PVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVG   46 (315)
T ss_dssp             HHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHC
Confidence            34455555543     24556899999999999999999953

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=92.62  E-value=0.054  Score=43.98  Aligned_cols=22  Identities=32%  Similarity=0.353  Sum_probs=19.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      ...|+++|.+|+||||+...|.
T Consensus        22 ~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           22 KIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            5689999999999999999883

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=92.61  E-value=0.069  Score=46.90  Aligned_cols=22  Identities=36%  Similarity=0.369  Sum_probs=19.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +.|+|+|.+|+||||+...|..
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g   23 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTN   23 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            4799999999999999999964

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=92.52  E-value=0.079  Score=44.50  Aligned_cols=25  Identities=28%  Similarity=0.258  Sum_probs=21.1

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .....|+|+|.+|+||||+...|..
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~   49 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAK   49 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhc
Confidence            4457899999999999999999975

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=92.51  E-value=0.062  Score=57.98  Aligned_cols=26  Identities=27%  Similarity=0.307  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|...+
T Consensus       443 ~G~~vaivG~sGsGKSTll~ll~~~~  468 (1321)
T 4f4c_A          443 AGQTVALVGSSGCGKSTIISLLLRYY  468 (1321)
T ss_dssp             TTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred             CCcEEEEEecCCCcHHHHHHHhcccc
Confidence            69999999999999999999996543

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=92.48  E-value=0.041  Score=54.94  Aligned_cols=22  Identities=27%  Similarity=0.259  Sum_probs=19.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFL  113 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~L  113 (278)
                      .|..+.|+|++||||||+.+.+
T Consensus       347 ~Ge~vaIiGpnGsGKSTLl~~i  368 (670)
T 3ux8_A          347 LGTFVAVTGVSGSGKSTLVNEV  368 (670)
T ss_dssp             TTSEEEEECSTTSSHHHHHTTT
T ss_pred             CCCEEEEEeeCCCCHHHHHHHH
Confidence            5889999999999999999754

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=92.47  E-value=0.08  Score=49.89  Aligned_cols=24  Identities=21%  Similarity=0.223  Sum_probs=22.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ++..|.|+|++|+||||+-+.|..
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC
Confidence            477999999999999999999986

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=92.47  E-value=0.1  Score=46.15  Aligned_cols=29  Identities=21%  Similarity=0.209  Sum_probs=23.5

Q ss_pred             hhhccCC--cEEEEEccCCCcHHHHHHHHHH
Q 023749           87 ISTELKG--TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        87 ~~~~~~~--~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +...+..  ..|+++|.||+||||+...|..
T Consensus        91 L~~~l~~~~~~v~~vG~~~vGKSslin~l~~  121 (262)
T 3cnl_A           91 LKKLSFDRLARVLIVGVPNTGKSTIINKLKG  121 (262)
T ss_dssp             HHHHCCCTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             HHHHHHHhhhheEEeCCCCCCHHHHHHHHhc
Confidence            3444555  5899999999999999999974

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=92.40  E-value=0.049  Score=45.48  Aligned_cols=24  Identities=21%  Similarity=0.200  Sum_probs=21.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+...|..
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~   51 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCN   51 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTT
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhC
Confidence            456899999999999999998864

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=92.39  E-value=0.081  Score=43.48  Aligned_cols=24  Identities=17%  Similarity=0.358  Sum_probs=20.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....|+|+|.+|+||||+.+.+..
T Consensus        19 ~~~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           19 SKPRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             -CCEEEEEESTTSSHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            456899999999999999887754

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=92.25  E-value=0.088  Score=44.28  Aligned_cols=22  Identities=18%  Similarity=0.217  Sum_probs=20.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus        14 ~ki~v~G~~~vGKSsli~~l~~   35 (223)
T 3cpj_B           14 FKIVLIGDSGVGKSNLLSRFTK   35 (223)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhc
Confidence            4799999999999999999975

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=92.16  E-value=0.044  Score=57.44  Aligned_cols=24  Identities=25%  Similarity=0.295  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|.++.|+|++||||||+.+.|+.
T Consensus       698 ~GeivaIiGpNGSGKSTLLklLaG  721 (986)
T 2iw3_A          698 LSSRIAVIGPNGAGKSTLINVLTG  721 (986)
T ss_dssp             TTCEEEECSCCCHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999999999975

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=92.11  E-value=0.064  Score=48.23  Aligned_cols=25  Identities=24%  Similarity=0.065  Sum_probs=21.5

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .+...|.|+|.+|+||||+...|..
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g   30 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLG   30 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHC
Confidence            4455799999999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	278
d1viaa_	161	c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobact	7e-08
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	9e-06
d1kaga_	169	c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia	2e-05
d2iyva1	165	c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycoba	4e-05
d1e6ca_	170	c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chr	2e-04
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	5e-04
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	6e-04

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

 Score = 48.8 bits (115), Expect = 7e-08
 Identities = 24/159 (15%), Positives = 59/159 (37%), Gaps = 14/159 (8%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
           ++  +G   + K+ L + LA  L   + DSD L+ +    + +    ++ +    +Q + 
Sbjct: 2   NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQK 61

Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPG-MVARMDHSGFPESEVL 213
                 S     +   G     S+    L + G  +++      +  R+D     +  + 
Sbjct: 62  MADFFSSCEKACIATGGGFVNVSN----LEKAGFCIYLKADFEYLKKRLDKDEISKRPLF 117

Query: 214 ---PQLFALYKEMRDGY-ATADVTV-----SLQKVASQL 243
               +   LY E    Y   A+  +     ++ ++ S++
Sbjct: 118 YDEIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEI 156

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 43.0 bits (100), Expect = 9e-06
 Identities = 21/180 (11%), Positives = 49/180 (27%), Gaps = 14/180 (7%)

Query: 90  ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF-EAAGGESAAKAFRESDEKG 148
           +L G  + L G   + K+ + + LA+          S                 +S ++ 
Sbjct: 1   DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQN 60

Query: 149 ---YQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPP-GMVARMDH 204
               Q A     +       +++          A  AL R    + +       + R   
Sbjct: 61  RMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLD 120

Query: 205 SGFPESEVLPQLFALYKEMRDGYATADVTV-----SLQKVASQLGYDDLDAVTTEDMTLE 259
            G         +  L+ +  D  A     +        +         ++A+ +    ++
Sbjct: 121 RGGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSA----INALQSGRFRID 176

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 16/163 (9%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
           ++FLVG   A K+ +G+ LA  L   ++DSD  + +  G +       E +E    + E 
Sbjct: 4   NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEK 63

Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVA--------RMDHSG 206
            + +     G ++   G           L   G+ ++++               R     
Sbjct: 64  VINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHV 123

Query: 207 FPESEVLPQLFALYKEMRDGY-ATADVTV-----SLQKVASQL 243
                    L AL  E    Y   ADVT+     S + VA+Q+
Sbjct: 124 ETPPR--EVLEALANERNPLYEEIADVTIRTDDQSAKVVANQI 164

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 10/158 (6%)

Query: 96  VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE 155
             LVG+  + K+ +G+ LA AL     D+D  + +  G   A     + +++  +  E  
Sbjct: 4   AVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDV 63

Query: 156 VLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM----DHSGFPESE 211
           V   L+    ++   G          AL  H +          V R             +
Sbjct: 64  VRAALADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPD 123

Query: 212 VLPQLFALYKEMRDGYA-TADVTV-----SLQKVASQL 243
              +  AL  +    Y   A + V     +   V   +
Sbjct: 124 RAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHI 161

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 14/162 (8%)

Query: 95  SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET 154
            +F+VG      T +G+ LA AL Y + D+D  +   +G   A     E     +++ E+
Sbjct: 4   PIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPG-FRRRES 62

Query: 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDHSG-------- 206
           E L+ +++  R+V   G   +       +  HG  +++  P   +A    +         
Sbjct: 63  EALQAVATPNRVVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPT 122

Query: 207 FPESEVLPQLFALYKEMRDGYA-TADVTV----SLQKVASQL 243
                +  ++ A+ +E    Y   A   V        +  +L
Sbjct: 123 LTGRPIAEEMEAVLREREALYQDVAHYVVDATQPPAAIVCEL 164

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 24/167 (14%), Positives = 60/167 (35%), Gaps = 13/167 (7%)

Query: 88  STELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GESAAKAFRESDE 146
           +T        L+G++ + K+ +   +A  L   + D D L         ++ +   + D 
Sbjct: 1   TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDR 60

Query: 147 KGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLA--LLRHGISLWIDVPPGMV----- 199
           K + QA  +    +    ++ +   +   +   +L      +   +++     ++     
Sbjct: 61  KPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLK 120

Query: 200 ARMDHSGFPESEVLPQLFALYKEM---RDGYATADVTVSLQKVASQL 243
           AR  H  F ++++L   F   +E           D+   L+ V +  
Sbjct: 121 ARKGH--FFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVAST 165

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 37.3 bits (85), Expect = 6e-04
 Identities = 17/123 (13%), Positives = 43/123 (34%), Gaps = 7/123 (5%)

Query: 90  ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGY 149
           + KG ++ + G     KT + + +A  L  +       + +    E+      +++   +
Sbjct: 2   QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVK----ENHFYTEYDTELDTH 57

Query: 150 QQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISL--WIDVPPG-MVARMDHSG 206
              E +  + L  M  ++V  GN  V   ++         +   +      +  R+    
Sbjct: 58  IIEEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQ 117

Query: 207 FPE 209
           + E
Sbjct: 118 YSE 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	278
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.96
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.96
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.95
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.85
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.76
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.74
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.72
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.66
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.65
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.63
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.63
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.63
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.63
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.61
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.61
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.6
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.59
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.58
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.53
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.51
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.51
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.51
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.5
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.48
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.47
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.45
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.42
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.32
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.32
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.31
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.29
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.29
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	99.28
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.23
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	99.19
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	99.09
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.06
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	99.04
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	99.01
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	99.0
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.97
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	98.92
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.9
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	98.85
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	98.84
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.59
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.57
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.54
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.42
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.39
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	98.35
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	98.28
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	98.24
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	98.24
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	98.18
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	98.06
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	98.05
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.02
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.97
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.9
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.88
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.85
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.83
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.81
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.8
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.78
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.73
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.71
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.7
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.69
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.68
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.63
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.62
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.6
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.57
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.22
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.22
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.2
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.14
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	97.13
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.12
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.05
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.02
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.0
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.9
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.82
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.72
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.65
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.59
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.55
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.53
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.52
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.47
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.47
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.42
d1okkd2	207	GTPase domain of the signal recognition particle r	96.38
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.36
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.36
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.35
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.33
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.32
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.31
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.31
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.24
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.24
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.17
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.17
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.14
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.14
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.14
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.13
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.12
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.09
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.05
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.05
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.04
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.0
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.98
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.95
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	95.95
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.94
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.9
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.79
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.77
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	95.7
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.7
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.66
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	95.6
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	95.59
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.48
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.45
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.38
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.34
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.32
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.32
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.31
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	95.3
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.24
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.22
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.17
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.16
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.11
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.04
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	94.84
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.83
d2fh5b1	207	Signal recognition particle receptor beta-subunit	94.82
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.8
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	94.69
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.52
d1nrjb_	209	Signal recognition particle receptor beta-subunit	94.49
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	94.45
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.45
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	94.4
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.39
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	94.39
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	94.31
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.31
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	94.3
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	94.26
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	94.24
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	94.22
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.21
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	94.07
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.06
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	94.01
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	94.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.99
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	93.96
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.96
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	93.9
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	93.8
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	93.77
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	93.74
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	93.67
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	93.67
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	93.66
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.66
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	93.65
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	93.64
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.61
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	93.61
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	93.58
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	93.55
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	93.52
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	93.51
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	93.51
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	93.48
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.46
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	93.44
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.38
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	93.35
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	93.35
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	93.25
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	93.19
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	93.17
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.09
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	93.08
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	93.07
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	93.07
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	93.06
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	93.04
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	93.03
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	92.97
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	92.95
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.89
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	92.86
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.81
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	92.81
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.62
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	92.61
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	92.6
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.5
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	92.44
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.43
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	92.39
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	92.35
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	92.27
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	92.23
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	92.0
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	91.96
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	91.87
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.59
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	91.32
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	91.0
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	90.82
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	90.81
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	90.7
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	90.66
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	90.57
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	90.46
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	90.31
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	90.19
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	90.15
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	89.67
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	89.58
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	89.47
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	89.41
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	89.33
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	88.83
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	88.73
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	88.66
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	88.64
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	88.21
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	88.06
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	87.99
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	87.96
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	87.91
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	87.68
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	87.45
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	87.14
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	86.88
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	86.87
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	86.66
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	86.33
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	86.26
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	85.55
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	85.2
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	84.87
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	84.55
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	84.44
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	84.38
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	84.26
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.97
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	83.91
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	83.74
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	83.69
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	83.38
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	83.37
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.26
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	82.83
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	82.82
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	82.71
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	82.61
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.43
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	82.41
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	82.19
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	81.68
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	81.68
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	80.9
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	80.51
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	80.27

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=1.5e-29  Score=209.96  Aligned_cols=158  Identities=21%  Similarity=0.258  Sum_probs=137.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g  173 (278)
                      ++|+|+|+|||||||+|+.||++||++|+|+|.++++..| +++.+++...|+..|++.|..++..+...++.|+.+|++
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~g-~~i~~~~~~~g~~~~r~~e~~~~~~~~~~~~~vi~~gg~   80 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG-RSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGG   80 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS-SCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCTT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhhh-hhhhhhhhhhhHHHHHHHHhhhhhhcccccccccccccc
Confidence            3578889999999999999999999999999999999998 899999999999999999999888887777788989988


Q ss_pred             eeechhHHHhhhCCcEEEEEcCHHHHHhh-h-cCCCC---CCChHHHHHHHHHHhhhccc-cCcEEEecCcccccccccC
Q 023749          174 AVQSSANLALLRHGISLWIDVPPGMVARM-D-HSGFP---ESEVLPQLFALYKEMRDGYA-TADVTVSLQKVASQLGYDD  247 (278)
Q Consensus       174 ~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~-~r~rp---~~~~~~~l~~~~~er~~~Y~-~AD~vId~~~va~~~~~~D  247 (278)
                      .+..+.++..+..+.+|||+++++++.+| . ...||   ..+..+.+..++.+|.+.|+ .||++||            
T Consensus        81 ~~~~~~~~~~l~~~~~I~L~~~~~~~~~R~~~~~~Rpll~~~~~~e~~~~l~~eR~~~Y~~~ad~~Id------------  148 (165)
T d2iyva1          81 AVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVD------------  148 (165)
T ss_dssp             GGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHHHCSEEEE------------
T ss_pred             ccccccccccccccceeeeeccchhhhhcccccccchhccCccHHHHHHHHHHHHHHHHHhhCCEEEE------------
Confidence            88888888777788999999999999999 3 33454   23445778899999999998 5999998            


Q ss_pred             CCCCCHHHHHHHHHHHh
Q 023749          248 LDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       248 ts~~tpeeva~~I~~~i  264 (278)
                      |+++||+|++++|++.+
T Consensus       149 t~~~s~~ei~~~Ii~~L  165 (165)
T d2iyva1         149 TNRRNPGAVVRHILSRL  165 (165)
T ss_dssp             CSSSCHHHHHHHHHTTS
T ss_pred             CCCCCHHHHHHHHHhcC
Confidence            78999999999998653

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.96  E-value=8.1e-29  Score=205.46  Aligned_cols=155  Identities=19%  Similarity=0.320  Sum_probs=131.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g  173 (278)
                      ++|+|+|+|||||||+|+.||++||++|+|+|.++++..| +++.+++...|...|+..|..+++.+......|+++|++
T Consensus         1 k~I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~g-~~i~~~~~~~g~~~~r~~e~~v~~~l~~~~~~v~~~~g~   79 (161)
T d1viaa_           1 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN-QKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG   79 (161)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT-SCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHHh-hhhhhHHHhhhhccchhhhhhhchhhhhccccccccccc
Confidence            4699999999999999999999999999999999999998 999999999999999999999999888877888888876


Q ss_pred             eeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcC---CCCCCChHHHHHHHHHHhhhccc-cCcEEEecCcccccccccC
Q 023749          174 AVQSSANLALLR-HGISLWIDVPPGMVARM-DHS---GFPESEVLPQLFALYKEMRDGYA-TADVTVSLQKVASQLGYDD  247 (278)
Q Consensus       174 ~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r---~rp~~~~~~~l~~~~~er~~~Y~-~AD~vId~~~va~~~~~~D  247 (278)
                      .+.    ...++ .+++|||++|++++.+| .++   .||.......++.+|++|.+.|. .||++||            
T Consensus        80 ~~~----~~~l~~~~~vI~L~~s~~~l~~Rl~~~~~~~Rp~~~~~~~~~~l~~~r~~~Y~~~ad~~Id------------  143 (161)
T d1viaa_          80 FVN----VSNLEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKANFILN------------  143 (161)
T ss_dssp             GGG----STTGGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHHHHHCSEEEE------------
T ss_pred             hhh----HHHHHhCCeEEEeccchHHHHHHHccccccccccccCchHHHHHHHHHHHHHHhhCCEEEE------------
Confidence            553    22344 78999999999999999 332   35532224567788999999887 6999998            


Q ss_pred             CCCCCHHHHHHHHHHHhh
Q 023749          248 LDAVTTEDMTLEVKWLYN  265 (278)
Q Consensus       248 ts~~tpeeva~~I~~~i~  265 (278)
                      |+++||||++++|++.++
T Consensus       144 t~~~s~eei~~~I~~~i~  161 (161)
T d1viaa_         144 IENKNIDELLSEIKKVIK  161 (161)
T ss_dssp             CTTCCHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHhC
Confidence            788999999999999874

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.95  E-value=2.5e-27  Score=197.20  Aligned_cols=158  Identities=23%  Similarity=0.349  Sum_probs=133.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN  172 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~  172 (278)
                      .+.|+|+|+|||||||+|+.||++||++|+|+|.++++..| +++.+++...|+..|++.+..++..... .+.++++++
T Consensus         2 ~~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~~g-~~i~ei~~~~g~~~~~~~~~~~l~~~~~-~~~~~~~~~   79 (170)
T d1e6ca_           2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSG-MTVADVVAAEGWPGFRRRESEALQAVAT-PNRVVATGG   79 (170)
T ss_dssp             CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHHHHHHHCC-SSEEEECCT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhhhh-hhhhhhhcccchHHHHHHHHHHHHhhcc-ccceecccc
Confidence            46789999999999999999999999999999999999998 8999999999999999999888877654 557788888


Q ss_pred             ceeechhHHHhhh-CCcEEEEEcCHHHHHhh-h----cCCCCCC---ChHHHHHHHHHHhhhccc-cCcEEEecCccccc
Q 023749          173 GAVQSSANLALLR-HGISLWIDVPPGMVARM-D----HSGFPES---EVLPQLFALYKEMRDGYA-TADVTVSLQKVASQ  242 (278)
Q Consensus       173 g~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~----~r~rp~~---~~~~~l~~~~~er~~~Y~-~AD~vId~~~va~~  242 (278)
                      +.+..+.++++++ .+.+|||++|++++.+| .    ...|+..   ...+.++.++.+|.+.|+ .||++||       
T Consensus        80 ~~~~~~~~~~~l~~~~~~v~L~~~~e~l~~Rl~~~~~~~~r~~~~~~~~~~~~~~~~~er~~lY~~~a~~~Id-------  152 (170)
T d1e6ca_          80 GMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVVD-------  152 (170)
T ss_dssp             TGGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCSEEEE-------
T ss_pred             cchhhhHHHHhhhccceeEEEecCchhHHHHHhhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHcCCEEEc-------
Confidence            8888888888887 78999999999999998 2    2234432   234677888999999997 6999998       


Q ss_pred             ccccCCCCCCHHHHHHHHHHHhh
Q 023749          243 LGYDDLDAVTTEDMTLEVKWLYN  265 (278)
Q Consensus       243 ~~~~Dts~~tpeeva~~I~~~i~  265 (278)
                           | +.+|++++++|++.++
T Consensus       153 -----~-~~~~~eiv~~Ii~~Lr  169 (170)
T d1e6ca_         153 -----A-TQPPAAIVCELMQTMR  169 (170)
T ss_dssp             -----T-TSCHHHHHHHHHHHTT
T ss_pred             -----C-CCCHHHHHHHHHHHcC
Confidence                 3 4799999999998764

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=5.2e-21  Score=153.19  Aligned_cols=159  Identities=24%  Similarity=0.366  Sum_probs=105.3

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeCCc
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG  173 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g~g  173 (278)
                      +.|+|+|+|||||||+|+.||++||++++|.|.......+ ..........++....................++.....
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG-ADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGG   81 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhhc-ccccchhhhhhhhHHHHHHHHHHHhhccccceEeeccch
Confidence            5799999999999999999999999999999999888777 444444444454444444333222222333344443333


Q ss_pred             eeechhHHHhhh-CCcEEEEEcCHHHHHhh-hcC-C----CCCCChHHHHHHHHHHhhhccc-cCcEEEecCcccccccc
Q 023749          174 AVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-G----FPESEVLPQLFALYKEMRDGYA-TADVTVSLQKVASQLGY  245 (278)
Q Consensus       174 ~v~~~~~~~~L~-~~~vV~L~a~~e~l~~R-~~r-~----rp~~~~~~~l~~~~~er~~~Y~-~AD~vId~~~va~~~~~  245 (278)
                      ..........+. .+..+|+.+++.++..| ..+ .    +........+...+.+|.+.|. .+|++||          
T Consensus        82 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~d~~Id----------  151 (169)
T d1kaga_          82 SVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIR----------  151 (169)
T ss_dssp             GGGSHHHHHHHHHHSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHHCSEEC-----------
T ss_pred             hhhhhhhhHHhhhcceeeeccCcHHHhhhHhhhccccchhcccccchhHHHHHHHHhhhhhhccCCEEEE----------
Confidence            223222233333 67899999999999988 221 1    1123345677778888888887 6999987          


Q ss_pred             cCCCCCCHHHHHHHHHHHhh
Q 023749          246 DDLDAVTTEDMTLEVKWLYN  265 (278)
Q Consensus       246 ~Dts~~tpeeva~~I~~~i~  265 (278)
                        |+++||+|++++|+++|+
T Consensus       152 --t~~~s~ee~v~~Ii~~le  169 (169)
T d1kaga_         152 --TDDQSAKVVANQIIHMLE  169 (169)
T ss_dssp             ------CHHHHHHHHHHHHC
T ss_pred             --CCCCCHHHHHHHHHHHhC
Confidence              789999999999999874

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.76  E-value=7.2e-19  Score=143.52  Aligned_cols=161  Identities=14%  Similarity=0.030  Sum_probs=100.4

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHHHhCCcee--cCchHHHHHhCCCChHH---HHHhhchhHhHHHHHHHHHHHHcCC
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAGGESAAK---AFRESDEKGYQQAETEVLKQLSSMG  164 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i--D~D~li~~~~g~~~i~e---i~~~~ge~~fr~~e~~vl~~l~~~~  164 (278)
                      ++.|+.|+|+|+|||||||+|+.|++++|++++  |.|.+...... .....   .........+.... ..+.......
T Consensus         1 ~~~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   78 (176)
T d1zp6a1           1 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKH-GRIDPWLPQSHQQNRMIMQIAA-DVAGRYAKEG   78 (176)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCS-SCCCTTSSSHHHHHHHHHHHHH-HHHHHHHHTS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhc-CCcccccchhhhHHHHHHHHHH-HHHHHHHhcC
Confidence            478999999999999999999999999998876  45655443222 11100   11111111122221 2233333445


Q ss_pred             CEEEEeCCceeechhHHHhhh----CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccccCcEEEecCcc
Q 023749          165 RLVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKV  239 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~~~~~L~----~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~~AD~vId~~~v  239 (278)
                      ..||..+..   .......+.    ....|||+++++++.+| ..|+.+.....+.+..+++.....+..++.+||    
T Consensus        79 ~~vi~~~~~---~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~id----  151 (176)
T d1zp6a1          79 YFVILDGVV---RPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLP----  151 (176)
T ss_dssp             CEEEECSCC---CTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHHHHHHHHTTCCGGGGGGEEE----
T ss_pred             CCeEecccc---cHHHHHHHHhcccccccccCCCCHHHHHHHHHhCCCccccchhhHHHHHHHHhhcccccCEEEE----
Confidence            556654422   222222222    34679999999999999 777665433345555555554444445677887    


Q ss_pred             cccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          240 ASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       240 a~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                              |+++|+||++++|++.+++.
T Consensus       152 --------t~~~~~ee~~~~I~~~l~~~  171 (176)
T d1zp6a1         152 --------VSGKDTDQALQSAINALQSG  171 (176)
T ss_dssp             --------CTTCCTTTTTTTTHHHHHHT
T ss_pred             --------CCCCCHHHHHHHHHHHHHcC
Confidence                    78999999999999999764

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.74  E-value=9.7e-19  Score=142.74  Aligned_cols=154  Identities=16%  Similarity=0.146  Sum_probs=88.5

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHHHhCC-ceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHH---HHHHcCCC
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLADALRY-YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVL---KQLSSMGR  165 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~-~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl---~~l~~~~~  165 (278)
                      ..++++|+|+|+|||||||+|+.||+++++ .+++.|.+......  .........+..........++   ........
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   79 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHF--YTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRG   79 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTC--SCC------CCCCCHHHHHHHHHHHHHHHTSSS
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHHhh--hhhHHHhhcccchHHHHHHHHHHHHHhhhhhcc
Confidence            467899999999999999999999999975 55555555444322  1111111111111111111222   22222232


Q ss_pred             EEEEeCCceeechhHHHhhh---CCcEEEEEcCHHHHHhh-hcCCCCCCC-----hHHHHHHHHHHhhhccccCcEEEec
Q 023749          166 LVVCAGNGAVQSSANLALLR---HGISLWIDVPPGMVARM-DHSGFPESE-----VLPQLFALYKEMRDGYATADVTVSL  236 (278)
Q Consensus       166 ~VI~~g~g~v~~~~~~~~L~---~~~vV~L~a~~e~l~~R-~~r~rp~~~-----~~~~l~~~~~er~~~Y~~AD~vId~  236 (278)
                      .++..+       ..+..++   .+.+|||+||++++.+| ..|++....     ..+.+...+.++...|. ++++|+ 
T Consensus        80 ~~~~~~-------~~~~~~~~~~~~~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~e~~~~~~~~~~~~~~-~~~~i~-  150 (174)
T d1y63a_          80 NHVVDY-------HSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYE-DDIVLV-  150 (174)
T ss_dssp             EEEEEC-------SCCTTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC-GGGEEE-
T ss_pred             cccccH-------HHHHHHHHhcCceEEEEECCHHHHHHHHHhCCCcccccccchhhhhhhhhHHHHHHhhc-CCEEEE-
Confidence            233221       1222232   56789999999999999 666543110     11233445666766665 677777 


Q ss_pred             CcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749          237 QKVASQLGYDDLDAVTTEDMTLEVKWLYN  265 (278)
Q Consensus       237 ~~va~~~~~~Dts~~tpeeva~~I~~~i~  265 (278)
                                 +++.|+|++++.|.+++.
T Consensus       151 -----------~~~~t~ee~~~~V~~I~~  168 (174)
T d1y63a_         151 -----------RENDTLEQMAATVEEIRE  168 (174)
T ss_dssp             -----------EECSSHHHHHHHHHHHHH
T ss_pred             -----------CCCCCHHHHHHHHHHHHH
Confidence                       457899999888776654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=2.3e-17  Score=134.22  Aligned_cols=157  Identities=12%  Similarity=0.079  Sum_probs=93.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChH---HHHHhhchhHhHHHHHHHHHHHHcCCCEEE
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAA---KAFRESDEKGYQQAETEVLKQLSSMGRLVV  168 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~---ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI  168 (278)
                      .++.|+|+|+|||||||+|+.|++++|+++++.|.+...... ....   ++........+..+...+ .........++
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   82 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNI-EKMASGEPLNDDDRKPWLQALNDAA-FAMQRTNKVSL   82 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHH-HHHHTTCCCCHHHHHHHHHHHHHHH-HHHHHHCSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHHh-hhhccCcceehhhhHHHHHHHHHHH-HHHHhccCceE
Confidence            467899999999999999999999999999999987644321 0000   000011112222222222 22223344444


Q ss_pred             EeCCceeechhHHHhhh----CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhh-ccccCc-EEEecCcccc
Q 023749          169 CAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRD-GYATAD-VTVSLQKVAS  241 (278)
Q Consensus       169 ~~g~g~v~~~~~~~~L~----~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~-~Y~~AD-~vId~~~va~  241 (278)
                      ...++  .....+..++    ...+|||++|++++.+| ..|+.... ..+.+..+++..+. .+..++ ++||      
T Consensus        83 ~~~~~--~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~Rl~~R~~~~~-~~~~~~~~~~~~e~~~~~e~~~~~id------  153 (171)
T d1knqa_          83 IVCSA--LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF-KTQMLVTQFETLQEPGADETDVLVVD------  153 (171)
T ss_dssp             EECCC--CSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCC-CHHHHHHHHHHCCCCCTTCTTEEEEE------
T ss_pred             eeccc--hHHHHHHHHHHhCCCceEEeecCCHHHHHHHHHhCcCCCc-cHHHHHhhHHHhhCCCcccCCEEEEe------
Confidence            43322  1222333333    33789999999999999 55543222 23456666555443 333444 4566      


Q ss_pred             cccccCCCCCCHHHHHHHHHHHhhh
Q 023749          242 QLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       242 ~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                             .+.|+|+++++|++.+++
T Consensus       154 -------~~~~~e~v~~~i~~~lk~  171 (171)
T d1knqa_         154 -------IDQPLEGVVASTIEVIKK  171 (171)
T ss_dssp             -------CSSCHHHHHHHHHHHHHC
T ss_pred             -------CCCCHHHHHHHHHHHhcC
Confidence                   247999999999999864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.66  E-value=1.3e-16  Score=134.70  Aligned_cols=161  Identities=11%  Similarity=0.064  Sum_probs=96.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChH-HHHHh---hch----hHhHHHHHHHHHHHHcC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAA-KAFRE---SDE----KGYQQAETEVLKQLSSM  163 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~-ei~~~---~ge----~~fr~~e~~vl~~l~~~  163 (278)
                      +.++|+|+|+|||||||+|+.||+++|++++++++++++.....+.. ..+..   .|.    +....+....+... ..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~-~~   83 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNL-TQ   83 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH-TT
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhh-hh
Confidence            56899999999999999999999999999999999987644212211 11111   111    12222222222222 23


Q ss_pred             CCEEEEeCCceeechhHHHhhh----CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhcccc-CcE-EEec
Q 023749          164 GRLVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYAT-ADV-TVSL  236 (278)
Q Consensus       164 ~~~VI~~g~g~v~~~~~~~~L~----~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~~-AD~-vId~  236 (278)
                      .++|++   |++....+...|.    .+.+|||++|.+++.+| ..|........+.+..........|+. ..+ +|| 
T Consensus        84 ~~~ild---GfPr~~~q~~~l~~~~~~~~vi~L~v~~~~l~~R~~~r~e~~~kr~~~y~~~~~~v~~~Y~~~~~l~~id-  159 (189)
T d2ak3a1          84 YNWLLD---GFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTDRPETVVKRLKAYEAQTEPVLEYYRKKGVLETFS-  159 (189)
T ss_dssp             SCEEEE---SCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHTGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEE-
T ss_pred             cCcccc---cccchhhHHHHhhhcCcceEEEEEeccchhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEC-
Confidence            445553   3444444444453    46899999999999999 443211001112222333333445653 333 333 


Q ss_pred             CcccccccccCCCCCCHHHHHHHHHHHhhhcCCC
Q 023749          237 QKVASQLGYDDLDAVTTEDMTLEVKWLYNASISD  270 (278)
Q Consensus       237 ~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~~  270 (278)
                                   +..++++.++|.+++...+++
T Consensus       160 -------------g~~~~eV~~~I~~~i~~~l~~  180 (189)
T d2ak3a1         160 -------------GTETNKIWPHVYAFLQTKLPQ  180 (189)
T ss_dssp             -------------CSSHHHHHHHHHHHHHTTSCB
T ss_pred             -------------CCChHHHHHHHHHHHHHHhhc
Confidence                         346899999999999988873

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.65  E-value=3.2e-17  Score=132.97  Aligned_cols=157  Identities=16%  Similarity=0.116  Sum_probs=87.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchh--HhHHHHHHHHHHHHcCCCEEEEe
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEK--GYQQAETEVLKQLSSMGRLVVCA  170 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~--~fr~~e~~vl~~l~~~~~~VI~~  170 (278)
                      -+.|+|+|+|||||||+|+.||+++|+++++.|+.+++......    +......  .+.+.....+.........+...
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDG----YDEEYDCPILDEDRVVDELDNQMREGGVIVDY   79 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTTCBCC----CCSSSSCCCBCHHHHHHHHHHHHHHCCEEEEC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhccccc----hhHHhhhhhHHHHHHHHHhhhhhhcCCcccch
Confidence            46799999999999999999999999999999998876321000    0000000  01111112222222222223321


Q ss_pred             CCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcCCCCCC-----ChHHHHHHHHHHhhhccc-cCcEEEecCcccccc
Q 023749          171 GNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPES-----EVLPQLFALYKEMRDGYA-TADVTVSLQKVASQL  243 (278)
Q Consensus       171 g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r~rp~~-----~~~~~l~~~~~er~~~Y~-~AD~vId~~~va~~~  243 (278)
                      ....+. ..    ...+.+|||++|++++.+| ..|++...     ...+.+...+.++...|. .+++.+++       
T Consensus        80 ~~~~~~-~~----~~~~~~i~l~~~~~~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~i~~~~-------  147 (173)
T d1rkba_          80 HGCDFF-PE----RWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPS-------  147 (173)
T ss_dssp             SCCTTS-CG----GGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSCGGGEEEEEC-------
T ss_pred             hHHHHH-HH----hcCCCcceecCCHHHHHHHHHhcCCCcccccccchhhhHHHHHHHHHHHhhhccEEEECC-------
Confidence            111011 00    0156899999999999999 65554311     112334446677777776 35566653       


Q ss_pred             cccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749          244 GYDDLDAVTTEDMTLEVKWLYNASIS  269 (278)
Q Consensus       244 ~~~Dts~~tpeeva~~I~~~i~~~~~  269 (278)
                          ++..+.++.+++|++++.++++
T Consensus       148 ----~~~~~~~~~i~~Ii~~i~~~~k  169 (173)
T d1rkba_         148 ----NKPEELENNVDQILKWIEQWIK  169 (173)
T ss_dssp             ----SSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----CCHHHHHHHHHHHHHHHHHHHH
Confidence                1222344455666666665543

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.63  E-value=3.2e-15  Score=125.03  Aligned_cols=159  Identities=12%  Similarity=0.171  Sum_probs=90.7

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC-CCChHHHHHhhchh-Hh--HH-HHHHHHHHHHc--C
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GESAAKAFRESDEK-GY--QQ-AETEVLKQLSS--M  163 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g-~~~i~ei~~~~ge~-~f--r~-~e~~vl~~l~~--~  163 (278)
                      -+|++|+|+|+|||||||+|+.||+++|+.++++++++++... +......+...-.. .+  .. ....+...+..  .
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQG   83 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhhhhhc
Confidence            3678999999999999999999999999999999998866432 11222222111100 01  01 11111122222  2


Q ss_pred             CCEEEEeCCceeechhHHHhh----h----CCcEEEEEcCHHHHHhh-hcC----CCCCCChHHHHHHHHHH----h---
Q 023749          164 GRLVVCAGNGAVQSSANLALL----R----HGISLWIDVPPGMVARM-DHS----GFPESEVLPQLFALYKE----M---  223 (278)
Q Consensus       164 ~~~VI~~g~g~v~~~~~~~~L----~----~~~vV~L~a~~e~l~~R-~~r----~rp~~~~~~~l~~~~~e----r---  223 (278)
                      .+.|++ |  ++........+    .    .+++|||++|++++.+| ..+    .+..+ ..+.+.+.++.    .   
T Consensus        84 ~~~i~d-g--~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~~~~~~d-~~e~~~~Rl~~y~~~~~~~  159 (194)
T d1qf9a_          84 KNFLVD-G--FPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDD-NIESIKKRFNTFNVQTKLV  159 (194)
T ss_dssp             CCEEEE-T--CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTC-SHHHHHHHHHHHHHTHHHH
T ss_pred             CCeEEE-e--cchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhccccccccc-cHHHHHHHHHHHHHHHHHH
Confidence            334443 2  33333332222    1    34799999999999999 332    22222 23333322221    1   


Q ss_pred             hhcccc-CcE-EEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          224 RDGYAT-ADV-TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       224 ~~~Y~~-AD~-vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                      ..+|+. .++ +||             ++.+++++.++|.++|+.
T Consensus       160 ~~~y~~~~~~~~Id-------------~~~~ieeV~~~I~~ii~~  191 (194)
T d1qf9a_         160 IDHYNKFDKVKIIP-------------ANRDVNEVYNDVENLFKS  191 (194)
T ss_dssp             HHHHHHTTCEEEEE-------------CSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCEEEEE-------------CCCCHHHHHHHHHHHHHH
Confidence            123543 333 566             467999999999998875

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2e-16  Score=130.96  Aligned_cols=166  Identities=14%  Similarity=0.141  Sum_probs=83.2

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-CChHHHHHhhchhHhHHHHHHHHHHHHcCCCEE
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLV  167 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~V  167 (278)
                      ...+|++|+|+|+|||||||+|+.||+++++++++++.+..+.... ......+...+...+.......+.........+
T Consensus        15 ~~~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (195)
T d1x6va3          15 GGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVC   94 (195)
T ss_dssp             CSCCCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHhcCCcc
Confidence            4457899999999999999999999999999988887776554331 110000111111112222223344444444444


Q ss_pred             EEeCCce-eechhHHHhh-h-C---CcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHH--HHHHhhhccccCcEEEecCc
Q 023749          168 VCAGNGA-VQSSANLALL-R-H---GISLWIDVPPGMVARM-DHSGFPESEVLPQLFA--LYKEMRDGYATADVTVSLQK  238 (278)
Q Consensus       168 I~~g~g~-v~~~~~~~~L-~-~---~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~--~~~er~~~Y~~AD~vId~~~  238 (278)
                      +...... ......+..+ + .   ...+++.++.....+| .++ +...........  ....+...++.+|++||   
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~~~dl~Id---  170 (195)
T d1x6va3          95 ITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG-LYKKARAGEIKGFTGIDSEYEKPEAPELVLK---  170 (195)
T ss_dssp             EEECCCCCHHHHHHHHHHHHTTTCCEEEEEECC-------------------------------CCCCCSSCSEEEC---
T ss_pred             ccccccchHHHHHHHHHHHhccccccccccchhheeeehhhccch-hhhhhhhhhhhhhhhhccccCCCCCCCEEEE---
Confidence            4433222 2222222222 2 1   1345666666666665 222 111110011111  11122223347899988   


Q ss_pred             ccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          239 VASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       239 va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                               |+++|+||++++|++++.+.
T Consensus       171 ---------T~~~s~ee~~~~Il~~l~~~  190 (195)
T d1x6va3         171 ---------TDSCDVNDCVQQVVELLQER  190 (195)
T ss_dssp             ---------TTTSCHHHHHHHHHHHHHHT
T ss_pred             ---------CCCCCHHHHHHHHHHHHHHC
Confidence                     78999999999999999864

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.63  E-value=1.6e-15  Score=122.81  Aligned_cols=155  Identities=12%  Similarity=0.041  Sum_probs=85.3

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecC--chHHHHHhCC---CChHHHHHhhc-------hhHhHHHHHHHHH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAGG---ESAAKAFRESD-------EKGYQQAETEVLK  158 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~--D~li~~~~g~---~~i~ei~~~~g-------e~~fr~~e~~vl~  158 (278)
                      +..+.|+|+|+|||||||+|+.|++.+|.++++.  |.+.....+.   ......+....       ...++..-..++.
T Consensus         1 M~~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (178)
T d1qhxa_           1 MTTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVV   80 (178)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhccccccccchhHHhhhhcccchhHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999887654  4443322110   00000000000       0011111122333


Q ss_pred             HHHcCCCEEEEeCCceeechh-H----HHhhh--CCcEEEEEcCHHHHHhh-hcCC-CCCCChHHHHHHHHHHhhhcccc
Q 023749          159 QLSSMGRLVVCAGNGAVQSSA-N----LALLR--HGISLWIDVPPGMVARM-DHSG-FPESEVLPQLFALYKEMRDGYAT  229 (278)
Q Consensus       159 ~l~~~~~~VI~~g~g~v~~~~-~----~~~L~--~~~vV~L~a~~e~l~~R-~~r~-rp~~~~~~~l~~~~~er~~~Y~~  229 (278)
                      .+......++....  +.... .    +....  ....|||+||++++.+| ..|+ +.. +   .....++. ...+..
T Consensus        81 ~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~-~---~~~~~~~~-~~~~~~  153 (178)
T d1qhxa_          81 AMARAGARIIIDDV--FLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDRVA-G---MAAKQAYV-VHEGVE  153 (178)
T ss_dssp             HHHHTTCEEEEEEC--CTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSSCT-T---HHHHHTTG-GGTTCC
T ss_pred             HHHhhccceEEeee--ecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHHHhcCCcch-h---hhhhhhhh-hhcCCC
Confidence            34444444443221  11111 1    11222  23679999999999999 4443 321 2   22222222 222336


Q ss_pred             CcEEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749          230 ADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       230 AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i  264 (278)
                      +|++||            |+..||||++++|.+++
T Consensus       154 ~dl~ID------------ts~~s~ee~a~~I~~~v  176 (178)
T d1qhxa_         154 YDVEVD------------TTHKESIECAWAIAAHV  176 (178)
T ss_dssp             CSEEEE------------TTSSCHHHHHHHHHTTC
T ss_pred             CCEEEE------------CCCCCHHHHHHHHHHhc
Confidence            899998            79999999999998765

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.63  E-value=8.8e-16  Score=123.68  Aligned_cols=159  Identities=13%  Similarity=-0.024  Sum_probs=85.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCcee-cCchHHHHHhCCCChHHHHHhhch-hHhHHHHHHHHHHHHcCCCEEEEe
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF-DSDSLVFEAAGGESAAKAFRESDE-KGYQQAETEVLKQLSSMGRLVVCA  170 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i-D~D~li~~~~g~~~i~ei~~~~ge-~~fr~~e~~vl~~l~~~~~~VI~~  170 (278)
                      .+.|+|+|+|||||||+|+.|++.++..++ +.|.+.+...+ ............ ..+... ..........+..++..
T Consensus         2 ~klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iid   79 (176)
T d2bdta1           2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVG-GYRPPWESDELLALTWKNI-TDLTVNFLLAQNDVVLD   79 (176)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCT-TCCCGGGCHHHHHHHHHHH-HHHHHHHHHTTCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhc-cccchhHHHHHHHHHHHHH-HHHHHHHHhcCCCcccc
Confidence            367999999999999999999999988755 55554433222 111100000011 111111 12223333334444443


Q ss_pred             CCceeechhHH-Hhh-h--C---CcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhccccCcEEEecCccccc
Q 023749          171 GNGAVQSSANL-ALL-R--H---GISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQ  242 (278)
Q Consensus       171 g~g~v~~~~~~-~~L-~--~---~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~  242 (278)
                      +.........+ ..+ .  .   ..++||++|++++.+| ..|++........+ ..+.+..........+||       
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~-~~~~~~~~~~~~~~~~id-------  151 (176)
T d2bdta1          80 YIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCL-ELVEEFESKGIDERYFYN-------  151 (176)
T ss_dssp             SCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGG-HHHHHHHHTTCCTTSEEE-------
T ss_pred             cccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCchhhhHHHH-HHHHHHHhCCCCCeEEEE-------
Confidence            32111111111 111 1  2   2579999999999999 66654322111112 233333333334567777       


Q ss_pred             ccccCCCCCCHHHHHHHHHHHhhh
Q 023749          243 LGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       243 ~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                           |++.+|+++.+.|.+++..
T Consensus       152 -----~~~~~~~~~~~~I~~i~~~  170 (176)
T d2bdta1         152 -----TSHLQPTNLNDIVKNLKTN  170 (176)
T ss_dssp             -----CSSSCGGGHHHHHHHHHHC
T ss_pred             -----CCCCCHHHHHHHHHHHHhc
Confidence                 6889999999999888863

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.61  E-value=4.7e-15  Score=123.79  Aligned_cols=159  Identities=13%  Similarity=0.139  Sum_probs=90.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhch----hHhHH-HHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDE----KGYQQ-AETEVLKQLS  161 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge----~~fr~-~e~~vl~~l~  161 (278)
                      .|++|+|+|+|||||||+|+.||+++|++++++++++++......     +.+.+. .|.    ..... ..........
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~   80 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFME-KGQLVPDEIVVNMVKERLRQPDA   80 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHSHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHh-cCCcccceeehhhhhhHhhhccc
Confidence            478999999999999999999999999999999998876432111     111111 110    00000 0111111111


Q ss_pred             cCCCEEEEeCCceeechhHHHhhh-----CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHH---hhhccccCcE
Q 023749          162 SMGRLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKE---MRDGYATADV  232 (278)
Q Consensus       162 ~~~~~VI~~g~g~v~~~~~~~~L~-----~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~e---r~~~Y~~AD~  232 (278)
                      .....|++ |.  +........+.     .+.+|||++|++++.+| ..+..+ +.....+...++.   ....|+.--+
T Consensus        81 ~~~~~vid-~~--~~~~~q~~~l~~~~~~p~~~i~L~~~~e~l~~R~~~~~~~-e~~~~rl~~y~~~~~~l~~~y~~~~~  156 (189)
T d1zaka1          81 QENGWLLD-GY--PRSYSQAMALETLEIRPDTFILLDVPDELLVERVVFDDTE-EKVKLRLETYYQNIESLLSTYENIIV  156 (189)
T ss_dssp             HHTCEEEE-SC--CCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTTCCT-THHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred             ccCcEEee-cc--chhhHHHhhhhhcccccchheeechhhhhhhhhccccchH-HHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence            22344553 32  22222233332     46899999999999999 444322 1122233332222   2233432224


Q ss_pred             EEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          233 TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       233 vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                      +||             .+.++++++++|.+++...+
T Consensus       157 ~Id-------------~~~~idev~~~I~~~l~~il  179 (189)
T d1zaka1         157 KVQ-------------GDATVDAVFAKIDELLGSIL  179 (189)
T ss_dssp             EEE-------------CSSCHHHHHHHHHHHHHHHH
T ss_pred             EEE-------------CCCCHHHHHHHHHHHHHHHh
Confidence            555             35799999999999986554

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.61  E-value=9.1e-15  Score=121.01  Aligned_cols=155  Identities=14%  Similarity=0.065  Sum_probs=91.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHHHHHHHHHHHc---CCC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVLKQLSS---MGR  165 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~e~~vl~~l~~---~~~  165 (278)
                      ++|+|+|+|||||||+|+.||+++|+.++++++++.+......     +..++. .+.....+....++.....   ...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~   79 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLD-AGDLVPSDLTNELVDDRLNNPDAAN   79 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTSGGGTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHH-hhhhhhhHHHHHHHHHHhhCccccc
Confidence            5899999999999999999999999999999998876433111     112222 1222223333344444332   122


Q ss_pred             EEEEeCCceeechhHHHhh---------hCCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHH----hhh---ccc
Q 023749          166 LVVCAGNGAVQSSANLALL---------RHGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKE----MRD---GYA  228 (278)
Q Consensus       166 ~VI~~g~g~v~~~~~~~~L---------~~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~e----r~~---~Y~  228 (278)
                      .++..|.+  ........+         ..+++++|++|.+++.+| ..|++.... .+.+.+.++.    ..+   .|+
T Consensus        80 ~~i~d~~p--~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~r~~~~-~~~i~~rl~~y~~~~~~l~~~y~  156 (181)
T d2cdna1          80 GFILDGYP--RSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDT-DDVILNRMKVYRDETAPLLEYYR  156 (181)
T ss_dssp             CEEEESCC--CSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCS-HHHHHHHHHHHHHHTTTHHHHTT
T ss_pred             cEEecccc--cchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhcccccccch-hHHHHHHHHHHHHHHHHHHHHHh
Confidence            23333322  222222111         145799999999999999 555554332 2334332222    111   233


Q ss_pred             cCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749          229 TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN  265 (278)
Q Consensus       229 ~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~  265 (278)
                      .--.+||             .+.|+|||+++|++.+.
T Consensus       157 ~~~~~Id-------------~~~s~eeV~~~I~~~l~  180 (181)
T d2cdna1         157 DQLKTVD-------------AVGTMDEVFARALRALG  180 (181)
T ss_dssp             TTEEEEE-------------CCSCHHHHHHHHHHHTT
T ss_pred             cCeEEEE-------------CCCCHHHHHHHHHHHhC
Confidence            2234555             35699999999998875

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=3.9e-15  Score=123.06  Aligned_cols=152  Identities=13%  Similarity=0.180  Sum_probs=84.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-----CChHHHHHhhchhHhHHHHHHHHH-HHH---cCC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ESAAKAFRESDEKGYQQAETEVLK-QLS---SMG  164 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-----~~i~ei~~~~ge~~fr~~e~~vl~-~l~---~~~  164 (278)
                      |+|+|+|+|||||||+|+.||+++|+.++++++++++....     ..+.+.+.. |...-...-..++. .+.   ...
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~-g~~~~d~~v~~~~~~~~~~~~~~~   79 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDA-GKLVTDELVIALVKERIAQEDCRN   79 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHH-TCCCCHHHHHHHHHHHHTSGGGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHc-CCCCcchhHHHHHHHhhccccccc
Confidence            58999999999999999999999999999999988664310     223333332 21100111111111 111   112


Q ss_pred             CEEEEeCCceeechhHHHhh-----hCCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHH----hhhccc-c----
Q 023749          165 RLVVCAGNGAVQSSANLALL-----RHGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKE----MRDGYA-T----  229 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~~~~~L-----~~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~e----r~~~Y~-~----  229 (278)
                      ..+++ |.  +........+     +.+++|||++|++++.+| ..|..+. .....+.. |.+    ....|. .    
T Consensus        80 g~i~~-g~--pr~~~~~~~~~~~~~~~~~vi~L~~~~~~l~~R~~~~~~~e-~i~~r~~~-y~~~~~~v~~~y~~~~~~~  154 (179)
T d1e4va1          80 GFLLD-GF--PRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVKDDQEE-TVRKRLVE-YHQMTAPLIGYYSKEAEAG  154 (179)
T ss_dssp             CEEEE-SC--CCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTCSHH-HHHHHHHH-HHHHTTHHHHHHHHHHHHT
T ss_pred             ceeec-cc--ccchHHhhhhhhccCCceEEEEeccchhhhhhhhcccccHH-HHHHHHHH-HHHHHHHHHHHHHHhcccc
Confidence            34443 32  2222222222     157899999999999999 4443211 01111111 111    112232 1    


Q ss_pred             C--cEEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749          230 A--DVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       230 A--D~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i  264 (278)
                      .  -.+||             ++.++|+|.++|.+++
T Consensus       155 ~~~~~~ID-------------a~~~ieeV~~~I~~~l  178 (179)
T d1e4va1         155 NTKYAKVD-------------GTKPVAEVRADLEKIL  178 (179)
T ss_dssp             SCEEEEEE-------------TTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEE-------------CCCCHHHHHHHHHHHh
Confidence            1  13555             4689999999999876

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.59  E-value=1.1e-14  Score=121.45  Aligned_cols=163  Identities=14%  Similarity=0.172  Sum_probs=90.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh-CCCChHHHHH---hhchhHhHHHHHHHH-HHHH---cC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGESAAKAFR---ESDEKGYQQAETEVL-KQLS---SM  163 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~-g~~~i~ei~~---~~ge~~fr~~e~~vl-~~l~---~~  163 (278)
                      +|++|+|+|+|||||||+|+.||+++|+.++++++++++.. .+......+.   ..|.....+....++ ..+.   ..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~~~   81 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCK   81 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGGT
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhcccccc
Confidence            68899999999999999999999999999999988886532 1111111111   112111111111112 2222   22


Q ss_pred             CCEEEEeCCceeechh-HHH-hhh-----CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHH---HHH----hhhccc
Q 023749          164 GRLVVCAGNGAVQSSA-NLA-LLR-----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFAL---YKE----MRDGYA  228 (278)
Q Consensus       164 ~~~VI~~g~g~v~~~~-~~~-~L~-----~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~---~~e----r~~~Y~  228 (278)
                      ...|+ .|.+...... .+. .+.     ..++++|+++.+.+.+| ..|.....+..+.+.+.   |.+    ...+|.
T Consensus        82 ~g~ii-~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~~~d~~~e~i~~R~~~y~~~~~p~~~~y~  160 (190)
T d1ak2a1          82 NGFLL-DGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHSDDNKKALKIRLEAYHTQTTPLVEYYS  160 (190)
T ss_dssp             TCEEE-ESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Cceee-cccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444 3322111111 111 111     35789999999999999 54432222222333222   211    122344


Q ss_pred             c-Cc-EEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          229 T-AD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       229 ~-AD-~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                      . .. .+||            + +.|+|+|.++|.+.+.+.-
T Consensus       161 ~~~~~~~Id------------~-~~s~eeV~~~I~~~l~k~~  189 (190)
T d1ak2a1         161 KRGIHSAID------------A-SQTPDVVFASILAAFSKAT  189 (190)
T ss_dssp             HTTCEEEEE------------T-TSCHHHHHHHHHHHHHHHT
T ss_pred             hcCCEEEEE------------C-CCCHHHHHHHHHHHHHHhc
Confidence            2 22 2455            3 4699999999999997653

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=4.8e-14  Score=117.99  Aligned_cols=161  Identities=12%  Similarity=0.156  Sum_probs=92.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC--CChHHHHH---hhchh----H-hHHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ESAAKAFR---ESDEK----G-YQQAETEVLKQLS  161 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~--~~i~ei~~---~~ge~----~-fr~~e~~vl~~l~  161 (278)
                      +.++|+|+|+|||||||+|+.||+++|+.+++++++++.....  ..+.+.+.   ..+..    . .............
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVK   86 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHHhhhc
Confidence            3568999999999999999999999999999999988654321  12222221   11111    0 1111111112222


Q ss_pred             cCCCEEEEeCCceeechhHHHhh----h-CCcEEEEEcCHHHHHhh-hc----CCCCCCChHHHHHHHHHHh-------h
Q 023749          162 SMGRLVVCAGNGAVQSSANLALL----R-HGISLWIDVPPGMVARM-DH----SGFPESEVLPQLFALYKEM-------R  224 (278)
Q Consensus       162 ~~~~~VI~~g~g~v~~~~~~~~L----~-~~~vV~L~a~~e~l~~R-~~----r~rp~~~~~~~l~~~~~er-------~  224 (278)
                      .....++..|.  .....+...+    . .+.+++|++|.+++.+| ..    .+++... .+.+++.+++.       .
T Consensus        87 ~~~~~~vl~g~--p~~~~q~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~r~~~~-~e~~~~r~~~y~~~~~~l~  163 (196)
T d1ukza_          87 ANKHKFLIDGF--PRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDN-IESIKKRFNTFKETSMPVI  163 (196)
T ss_dssp             TTCCEEEEETC--CCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCS-HHHHHHHHHHHHHTTHHHH
T ss_pred             cCCCceeeecc--chhHHHHHHHHHhccccceeeccCCCHHHHHHHHHhccccccccchH-HHHHHHHHHHHHHHHHHHH
Confidence            23334444332  2222222222    2 57899999999999998 22    1344322 23343332221       1


Q ss_pred             hccccCc--EEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcC
Q 023749          225 DGYATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASI  268 (278)
Q Consensus       225 ~~Y~~AD--~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~  268 (278)
                      .+|+..+  +.||             .+.+++++.++|.+.+++.+
T Consensus       164 ~~y~~~~~~~~Id-------------~~~s~eeV~~~I~~~i~~~L  196 (196)
T d1ukza_         164 EYFETKSKVVRVR-------------CDRSVEDVYKDVQDAIRDSL  196 (196)
T ss_dssp             HHHHTTTCEEEEE-------------CSSCHHHHHHHHHHHHHHHC
T ss_pred             HHHHhcCCEEEEE-------------CCCCHHHHHHHHHHHHHhhC
Confidence            2344333  3555             35799999999999998753

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=1.5e-14  Score=120.08  Aligned_cols=158  Identities=11%  Similarity=0.092  Sum_probs=87.0

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHHHHHHHHHHHc----C
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVLKQLSS----M  163 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~e~~vl~~l~~----~  163 (278)
                      .++|+|+|+|||||||+|+.||+++|++++++++++++.....+     +.+.+..............+...+..    .
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACK   81 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCcccc
Confidence            46899999999999999999999999999999998876433111     22222221111111111122223322    2


Q ss_pred             CCEEEEeCCceeechhH---H-Hhhh-----CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhcccc-Cc-
Q 023749          164 GRLVVCAGNGAVQSSAN---L-ALLR-----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGYAT-AD-  231 (278)
Q Consensus       164 ~~~VI~~g~g~v~~~~~---~-~~L~-----~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y~~-AD-  231 (278)
                      ...|++ |.  +.....   + ..+.     .+++|||+++.+++.+| ..+..- ..-.+.+......-...|+. .. 
T Consensus        82 ~g~i~d-g~--p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~~~~-~~r~~~y~~~~~~v~~~y~~~~~~  157 (180)
T d1akya1          82 NGFILD-GF--PRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNADAL-KKRLAAYHAQTEPIVDFYKKTGIW  157 (180)
T ss_dssp             SCEEEE-SC--CCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSHHHH-HHHHHHHHHHTTHHHHHHHHHTCE
T ss_pred             CCEecc-Cc--cchhhhHHHHHhhHHHcCCCceeeeecccccchhhhcccccccc-cchHHHHHHHHHHHHHHHHhcCCE
Confidence            334443 32  222111   1 1221     56899999999999999 432100 00001111110001122331 12 


Q ss_pred             EEEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          232 VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       232 ~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                      .+||             .+.++++|.++|++.+.++
T Consensus       158 ~~Id-------------~~~~~eeV~~~I~~~l~k~  180 (180)
T d1akya1         158 AGVD-------------ASQPPATVWADILNKLGKN  180 (180)
T ss_dssp             EEEE-------------TTSCHHHHHHHHHHHHTCC
T ss_pred             EEEE-------------CCCCHHHHHHHHHHHHccC
Confidence            3456             4579999999999998754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.3e-13  Score=113.24  Aligned_cols=159  Identities=16%  Similarity=0.186  Sum_probs=90.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC--CC----hHHHHHhhc----hhHhHHHHHHHHHHHH-
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ES----AAKAFRESD----EKGYQQAETEVLKQLS-  161 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~--~~----i~ei~~~~g----e~~fr~~e~~vl~~l~-  161 (278)
                      |+.|+|.|+|||||||+|+.||+++|+.++++++++++....  ..    +.+.+....    +.....+...+..... 
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~   80 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA   80 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccchh
Confidence            578999999999999999999999999999999998764320  11    111221111    0111111111111111 


Q ss_pred             -cCCCEEEEeCCceeechhHHHhh----h----CCcEEEEEcCHHHHHhh-hc----CCCCCCChHHHHHHH---HHH--
Q 023749          162 -SMGRLVVCAGNGAVQSSANLALL----R----HGISLWIDVPPGMVARM-DH----SGFPESEVLPQLFAL---YKE--  222 (278)
Q Consensus       162 -~~~~~VI~~g~g~v~~~~~~~~L----~----~~~vV~L~a~~e~l~~R-~~----r~rp~~~~~~~l~~~---~~e--  222 (278)
                       .....++..|  .+........+    .    .+.+++++++.++..+| ..    .+|.... .+.+.+.   |.+  
T Consensus        81 ~~~~~~~~~~g--~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~r~~~~-~e~i~~r~~~y~~~~  157 (194)
T d1teva_          81 NAQKNKFLIDG--FPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDN-RESLEKRIQTYLQST  157 (194)
T ss_dssp             CTTCCEEEEES--CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCC-HHHHHHHHHHHHHHH
T ss_pred             hhcccceeecc--chhhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCCcccCCccc-hHHHHHHHHHHHHHH
Confidence             1233344333  33333322222    2    24689999999999887 32    2454432 3333332   222  


Q ss_pred             --hhhcccc-CcE-EEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          223 --MRDGYAT-ADV-TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       223 --r~~~Y~~-AD~-vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                        ....|+. ..+ +||             ++.|+++|.++|.+.+.++
T Consensus       158 ~~l~~~y~~~~~~~~ID-------------a~~s~eeV~~~I~~il~k~  193 (194)
T d1teva_         158 KPIIDLYEEMGKVKKID-------------ASKSVDEVFDEVVQIFDKE  193 (194)
T ss_dssp             HHHHHHHHHTTCEEEEE-------------TTSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCEEEEE-------------CCCCHHHHHHHHHHHHhcC
Confidence              1223543 233 456             3579999999999998764

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.51  E-value=9.4e-14  Score=114.05  Aligned_cols=158  Identities=15%  Similarity=0.172  Sum_probs=85.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHHHHHHH-HHHHc---CC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETEVL-KQLSS---MG  164 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~e~~vl-~~l~~---~~  164 (278)
                      |+|+|+|+|||||||+|+.||+++|++++++++++++.....+     +.+.+.. |...........+ ..+..   ..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   79 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDR-GDLVPDEVTIGIVRERLSKDDCQN   79 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhhccCChhhHHHHHHHHc-CCeeccchHHHHHHHHhhchhhhc
Confidence            5799999999999999999999999999999998876432011     1111111 1111111111111 12111   12


Q ss_pred             CEEEEeCCceeech-hHHH-hhh-----CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhh---hcccc-CcE
Q 023749          165 RLVVCAGNGAVQSS-ANLA-LLR-----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMR---DGYAT-ADV  232 (278)
Q Consensus       165 ~~VI~~g~g~v~~~-~~~~-~L~-----~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~---~~Y~~-AD~  232 (278)
                      ..++ .+....... .... ...     .++++||+++.+.+.+| ..+.-+ +.....++...+...   ..|+. ..+
T Consensus        80 ~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~~~~-e~~~~Rl~~y~~~~~~l~~~y~~~~~~  157 (182)
T d1zina1          80 GFLL-DGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTADDNE-ATVANRLEVNMKQMKPLVDFYEQKGYL  157 (182)
T ss_dssp             CEEE-ESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTCSH-HHHHHHHHHHHHHHTHHHHHHHHHTCE
T ss_pred             Cccc-ccccchhHHHHHHHHhhhccCCceeeeeccccccchhhhccccccch-HHHHHHHHHHHHHHHHHHHHHHhcCCE
Confidence            3333 332111111 1111 111     45799999999999999 544321 111122222111111   22442 233


Q ss_pred             -EEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          233 -TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       233 -vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                       +||             ++.+++++.++|..+|.+.
T Consensus       158 ~~Id-------------~~~~~eeV~~~I~~~L~~l  180 (182)
T d1zina1         158 RNIN-------------GEQDMEKVFADIRELLGGL  180 (182)
T ss_dssp             EEEE-------------CSSCHHHHHHHHHHHHHHH
T ss_pred             EEEE-------------CCCCHHHHHHHHHHHHHhc
Confidence             566             4579999999999998753

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.51  E-value=2.7e-15  Score=121.55  Aligned_cols=159  Identities=15%  Similarity=0.110  Sum_probs=79.9

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH-----HHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL-----VFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR  165 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l-----i~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~  165 (278)
                      .+|.+|+|+|+|||||||+|++||++|+..+++.+.+     .....+ ..................  ...........
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~   80 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELS-SELGFTREDRHTNIQRIA--FVATELTRAGA   80 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTC-TTCCCSHHHHHHHHHHHH--HHHHHHHHTTC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhhhhhHHhhhccc-cccchhHHHHHHHHHHHH--HHhhhhhcccc
Confidence            4789999999999999999999999998766654322     222222 110001111011111111  11112222333


Q ss_pred             EEEEeCCceeechhHHH---hhhC---CcEEEEEcCHHHHHhh-hcCCCC--CCChHHHHHHHHHHhhhccccCcEEEec
Q 023749          166 LVVCAGNGAVQSSANLA---LLRH---GISLWIDVPPGMVARM-DHSGFP--ESEVLPQLFALYKEMRDGYATADVTVSL  236 (278)
Q Consensus       166 ~VI~~g~g~v~~~~~~~---~L~~---~~vV~L~a~~e~l~~R-~~r~rp--~~~~~~~l~~~~~er~~~Y~~AD~vId~  236 (278)
                      .++..+ ..........   ....   -+.++++++......| ..+...  .......+. .+..+...+..+|++|| 
T Consensus        81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~di~ID-  157 (183)
T d1m8pa3          81 AVIAAP-IAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFT-GVDDPYETPEKADLVVD-  157 (183)
T ss_dssp             EEEEEC-CCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCB-TTTBCCCCCSSCSEEEC-
T ss_pred             eeeccc-chhhhHHHHHHHHhhcccchhhhhhHHHHHHHHHhhhhhhcccchhhchhhhhh-hhcccccCCCCCcEEEE-
Confidence            333332 2222111111   1112   2456777788877776 221100  000000000 00111122346889887 


Q ss_pred             CcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          237 QKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       237 ~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                                 |+++||+|++++|+++|..
T Consensus       158 -----------T~~~s~~e~v~~I~~~L~~  176 (183)
T d1m8pa3         158 -----------FSKQSVRSIVHEIILVLES  176 (183)
T ss_dssp             -----------TTTSCHHHHHHHHHHHHHH
T ss_pred             -----------CCCCCHHHHHHHHHHHHHH
Confidence                       7899999999999999974

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.50  E-value=4.8e-15  Score=127.23  Aligned_cols=159  Identities=16%  Similarity=0.245  Sum_probs=86.3

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh----CC--ceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL----RY--YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG  164 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L----g~--~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~  164 (278)
                      =+|++|+|+|+|||||||+|+.|+++|    +.  .++|.|.+.+.......   +-...+...++.+. .+...+...+
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~~~l~---ys~~~r~~~~~r~~-~~a~~~~~~g   97 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLG---FSEADRNENIRRIA-EVAKLFADSN   97 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCC---SSHHHHHHHHHHHH-HHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhcCCCC---CChhHHHHHHHHHH-HHHHHHhccC
Confidence            578899999999999999999999876    43  35787776543321011   11111122222221 1222333344


Q ss_pred             CEEEEeCCceee--chhHHHhhh----------CCcEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccc---c
Q 023749          165 RLVVCAGNGAVQ--SSANLALLR----------HGISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYA---T  229 (278)
Q Consensus       165 ~~VI~~g~g~v~--~~~~~~~L~----------~~~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~---~  229 (278)
                      ..||........  ...+++.+.          ..+.|||+||.+++.+|+..+.........+.. +......|+   .
T Consensus        98 ~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~y~~~~~~~~~~-~~gvd~~ye~P~~  176 (208)
T d1m7ga_          98 SIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKE-FTGISAPYEAPAN  176 (208)
T ss_dssp             CEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSSSS-CBTTTBCCCCCSS
T ss_pred             CceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhcccchhhhhcCcccc-eecccccCCCCCC
Confidence            445543221111  111222221          125799999999999993222110000000000 000112233   5


Q ss_pred             CcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          230 ADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       230 AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                      +|++||            |+.+|+++++++|+++|.+
T Consensus       177 ~dl~Id------------t~~~s~~e~~~~Ii~~L~~  201 (208)
T d1m7ga_         177 PEVHVK------------NYELPVQDAVKQIIDYLDT  201 (208)
T ss_dssp             CSEEEE------------CSSSCHHHHHHHHHHHHHH
T ss_pred             CcEEEe------------CCCCCHHHHHHHHHHHHHH
Confidence            899998            6789999999999999974

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.48  E-value=2.5e-13  Score=113.60  Aligned_cols=158  Identities=13%  Similarity=0.155  Sum_probs=89.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCC-CC----hHHHHHhhchhHhHHH-HHHHHHHHHc---
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES----AAKAFRESDEKGYQQA-ETEVLKQLSS---  162 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~-~~----i~ei~~~~ge~~fr~~-e~~vl~~l~~---  162 (278)
                      ++++|+|+|+|||||||+|+.||+++|++++++++++++.... ..    +.+.... |...-.+. ...+..++..   
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~   85 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEK-GQLVPLETVLDMLRDAMVAKVD   85 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHTTTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhh-ccCCchheeeeehhhhhhhccc
Confidence            5788999999999999999999999999999999998765421 11    1111111 11111111 1112222322   


Q ss_pred             -CCCEEEEeCCceeechhHHHhh----h-CCcEEEEEcCHHHHHhh-h----cCCCCCC--C-hHHHHHHHHHHhh---h
Q 023749          163 -MGRLVVCAGNGAVQSSANLALL----R-HGISLWIDVPPGMVARM-D----HSGFPES--E-VLPQLFALYKEMR---D  225 (278)
Q Consensus       163 -~~~~VI~~g~g~v~~~~~~~~L----~-~~~vV~L~a~~e~l~~R-~----~r~rp~~--~-~~~~l~~~~~er~---~  225 (278)
                       ....|+ .|  ++........+    . ...++++.++.+++.+| .    ..+|+..  + ....+....+...   .
T Consensus        86 ~~~g~il-dg--~pr~~~qa~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~r~~d~~e~i~~R~~~y~~~~~~~~~  162 (194)
T d3adka_          86 TSKGFLI-DG--YPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIA  162 (194)
T ss_dssp             TCSCEEE-ES--CCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHTCCCCCSTTHHHHHHHHHHHTHHHHH
T ss_pred             cccccee-ee--ccchhHHHHHHHHHhCCccchhccccchhhhHhHhhhhcccccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence             122344 33  23322222222    2 56899999999999998 2    1234322  1 2223322222222   2


Q ss_pred             ccccCc--EEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          226 GYATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       226 ~Y~~AD--~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                      .|+..+  ..||             .+.+++++.++|..+|.+
T Consensus       163 ~y~~~~~~~~Id-------------~~~s~~eV~~~I~~~i~~  192 (194)
T d3adka_         163 FYEKRGIVRKVN-------------AEGSVDDVFSQVCTHLDT  192 (194)
T ss_dssp             HHTTTTCEEEEE-------------CCSCHHHHHHHHHHHHHT
T ss_pred             HHHhcCCEEEEE-------------CCCCHHHHHHHHHHHHHh
Confidence            355333  2455             347999999999998864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.47  E-value=2.7e-13  Score=112.15  Aligned_cols=155  Identities=13%  Similarity=0.109  Sum_probs=86.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCC-----hHHHHHhhchhHhHHHHHH-HHHHHHc---CC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES-----AAKAFRESDEKGYQQAETE-VLKQLSS---MG  164 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~-----i~ei~~~~ge~~fr~~e~~-vl~~l~~---~~  164 (278)
                      |+|+|+|+|||||||+|+.||+++|++++++++++++.....+     +.+++.. |...-...... +..++..   ..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~~-g~~~~d~~~~~~~~~~~~~~~~~~   79 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQ-GALVPDEVTIGIVRERLSKSDCDN   79 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHTSSTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhcCCchHHHHHHHHHc-CCcccCcchhHHHHHhhccccccc
Confidence            6799999999999999999999999999999998865432111     1222221 21110111111 1222221   22


Q ss_pred             CEEEEeCCceeechhHHHh----hh-----CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHh----hhccccC
Q 023749          165 RLVVCAGNGAVQSSANLAL----LR-----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEM----RDGYATA  230 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~~~~~----L~-----~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er----~~~Y~~A  230 (278)
                      ..|+. |  ++........    +.     ..++++|+++.+.+.+| ..+..+. .....++. |.+.    ..+|+.-
T Consensus        80 ~~vl~-g--~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~~~~e-~i~~R~~~-y~~~~~~i~~~y~~~  154 (182)
T d1s3ga1          80 GFLLD-G--FPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTADDNPD-TVTNRLEV-NMNQTAPLLAFYDSK  154 (182)
T ss_dssp             CEEEE-S--CCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTCSHH-HHHHHHHH-HHHHHHHHHHHHHTT
T ss_pred             ceeee-c--cccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhccchhH-HHHHHHHH-HHHHHHHHHHHHHhc
Confidence            34443 2  2222222222    21     24678999999999999 4332221 11122221 2221    2235432


Q ss_pred             cE--EEecCcccccccccCCCCCCHHHHHHHHHHHhhhc
Q 023749          231 DV--TVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       231 D~--vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                      +.  +||             ++.++++|.++|..++++.
T Consensus       155 ~~~~~Id-------------~~~~~eeV~~~I~~il~~~  180 (182)
T d1s3ga1         155 EVLVNIN-------------GQKDIKDVFKDLDVILQGN  180 (182)
T ss_dssp             TCEEEEE-------------CSSCHHHHHHHHHHHHTCC
T ss_pred             CCEEEEE-------------CCCCHHHHHHHHHHHHHhc
Confidence            32  455             4689999999999998764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.45  E-value=1.2e-12  Score=110.73  Aligned_cols=40  Identities=20%  Similarity=0.355  Sum_probs=36.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA  131 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~  131 (278)
                      +..+|.|.|||||||||+|+.||++||++|++++++++..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~~   41 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA   41 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHH
Confidence            4567888899999999999999999999999999998764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.42  E-value=2.3e-12  Score=104.37  Aligned_cols=160  Identities=14%  Similarity=0.063  Sum_probs=82.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCce-----ecCchHHHHHhC---CCChHHHHHhh---chhHhHHHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYY-----FDSDSLVFEAAG---GESAAKAFRES---DEKGYQQAETEVLKQLS  161 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~-----iD~D~li~~~~g---~~~i~ei~~~~---ge~~fr~~e~~vl~~l~  161 (278)
                      .+.|+|.|+|||||||+++.|++.|+...     ++.++.......   .....+.+...   ....+.......+..+.
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMA   80 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHHHHh
Confidence            47899999999999999999999996553     333443332210   00000000000   00111111122233343


Q ss_pred             cCCCEEEEeCCceeec------hhHHH---hhhCCcEEEEEcCHHHHHhh-hc---CCCCCCC--hHHHHHHHHHHhhhc
Q 023749          162 SMGRLVVCAGNGAVQS------SANLA---LLRHGISLWIDVPPGMVARM-DH---SGFPESE--VLPQLFALYKEMRDG  226 (278)
Q Consensus       162 ~~~~~VI~~g~g~v~~------~~~~~---~L~~~~vV~L~a~~e~l~~R-~~---r~rp~~~--~~~~l~~~~~er~~~  226 (278)
                      .. ..++..+......      ...+.   ....+.+|||+++++++.+| .+   +++....  ..+.+..........
T Consensus        81 ~~-~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (190)
T d1khta_          81 KE-SPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMS  159 (190)
T ss_dssp             TT-SCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CC-CeEEECCcccchHHHHHHHhhhhhhhhhccccceeeecCCHHHHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHH
Confidence            33 3444444332211      11111   22368899999999999988 32   3343322  122222222222222


Q ss_pred             cc---cC-cEEEecCcccccccccCCCCCCHHHHHHHHHHHhh
Q 023749          227 YA---TA-DVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYN  265 (278)
Q Consensus       227 Y~---~A-D~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~  265 (278)
                      |.   .+ ..+|+            +++.++|+++++|++.|+
T Consensus       160 ~~~~~~~~~~~v~------------~~~~~~ee~~~ei~~~lk  190 (190)
T d1khta_         160 YGVLTGATVKIVQ------------NRNGLLDQAVEELTNVLR  190 (190)
T ss_dssp             HHHHHCCEEEEEE------------CCTTCHHHHHHHHHHHHC
T ss_pred             HHHhhCCCeEEEE------------CCCCCHHHHHHHHHHHhC
Confidence            32   33 34555            478999999999999874

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.32  E-value=6.1e-12  Score=102.37  Aligned_cols=28  Identities=11%  Similarity=0.002  Sum_probs=24.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCce
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYY  121 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~  121 (278)
                      +.|+|+|++||||||+++.|++.|+...
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~   29 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQG   29 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            4678899999999999999999997553

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.32  E-value=1.3e-12  Score=108.68  Aligned_cols=155  Identities=18%  Similarity=0.146  Sum_probs=84.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHH---HHHh---hch--------hHh------HHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAK---AFRE---SDE--------KGY------QQA  152 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~e---i~~~---~ge--------~~f------r~~  152 (278)
                      ++.|.|+|++||||||+|+.|. .+|++++++|.+.++.+. .....   ++..   .+.        ..|      ...
T Consensus         3 p~IIgitG~~gSGKstva~~l~-~~g~~~~~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l   80 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLR-SWGYPVLDLDALAARARE-NKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKAL   80 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH-HTTCCEEEHHHHHHHHHH-HTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH-HCCCeEEEccHHHHHhhh-cccccccccccceeccCchhhhhHHHhhhcCchhhhhh
Confidence            6788999999999999999995 599999999998765431 00000   0000   000        000      001


Q ss_pred             HH--------HHHHHHHc-CCCEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhh-hcC-CCCCCChHHHHHHHHH
Q 023749          153 ET--------EVLKQLSS-MGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESEVLPQLFALYK  221 (278)
Q Consensus       153 e~--------~vl~~l~~-~~~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R-~~r-~rp~~~~~~~l~~~~~  221 (278)
                      +.        .+...... ....++..+.  .+.+..+. -..+.+||++||.+++.+| .+| +...++....+..++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~vi~e~~--~~~~~~~~-~~~d~vI~v~a~~e~r~~Rl~~R~~~~~~~~~~~~~~q~~  157 (191)
T d1uf9a_          81 EAVVHPEVRRLLMEELSRLEAPLVFLEIP--LLFEKGWE-GRLHGTLLVAAPLEERVRRVMARSGLSREEVLARERAQMP  157 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCSEEEEECT--TTTTTTCG-GGSSEEEEECCCHHHHHHHHHTTTCCTTHHHHHHHTTSCC
T ss_pred             hhhhhHHHHHHHHhhhhhcccceEEEEee--cccccccc-ccceeEEEEecchhhHHHHHHhcccchHHHHHHHHHhCCC
Confidence            00        01111111 2333443321  11111110 0157899999999999999 444 4443222222211111


Q ss_pred             HhhhccccCcEEEecCcccccccccCCCCCCHHHHHHHHHHHhhh
Q 023749          222 EMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNA  266 (278)
Q Consensus       222 er~~~Y~~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~  266 (278)
                       +......||++|+|             +.|.+++..+|..++.+
T Consensus       158 -~~~~~~~aD~vI~N-------------~~s~~~l~~~v~~il~~  188 (191)
T d1uf9a_         158 -EEEKRKRATWVLEN-------------TGSLEDLERALKAVLAE  188 (191)
T ss_dssp             -HHHHHHHCSEEECC-------------SSHHHHHHHHHHHHHHS
T ss_pred             -HHHHHHhCCEEEEC-------------CCCHHHHHHHHHHHHHH
Confidence             01111259999985             35899999998888754

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2e-11  Score=104.11  Aligned_cols=159  Identities=14%  Similarity=0.078  Sum_probs=84.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh---CCceecC-----c----hHHHHHhCC---CChH---HHHHhhchhHhHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDS-----D----SLVFEAAGG---ESAA---KAFRESDEKGYQQAE  153 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~~iD~-----D----~li~~~~g~---~~i~---ei~~~~ge~~fr~~e  153 (278)
                      +|+.|+|.|+.||||||+++.|++.|   |+.++-+     +    .++.+.+.+   .+..   -+|...   .+... 
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~---r~~~~-   77 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSAN---RWEQV-   77 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHH---HHTTH-
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCcccchhhhhhhhcccccchhhhhhHHHHH---HHHHH-
Confidence            58899999999999999999999987   5655422     1    122222211   1100   011110   01101 


Q ss_pred             HHHHHHHHcCCCEEEEeCCce---e-------echhHHHhh-----hCCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHH
Q 023749          154 TEVLKQLSSMGRLVVCAGNGA---V-------QSSANLALL-----RHGISLWIDVPPGMVARM-DHSGFPESEVLPQLF  217 (278)
Q Consensus       154 ~~vl~~l~~~~~~VI~~g~g~---v-------~~~~~~~~L-----~~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~  217 (278)
                       ..+......+..||+...-.   +       ........+     +++++|||++|++++.+| ..++...++ .+.+.
T Consensus        78 -~~i~~~l~~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~~~~~E~-~~~~~  155 (209)
T d1nn5a_          78 -PLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYEN-GAFQE  155 (209)
T ss_dssp             -HHHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----CTTCS-HHHHH
T ss_pred             -HhHHHHhhcccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHHhhhhccccccccc-HHHHH
Confidence             12233333455666643200   0       001111112     268999999999999999 433322222 33444


Q ss_pred             HHHHHhhhcccc--Cc-EEEecCcccccccccCCCCCCHHHHHHHHHHHhhhcCC
Q 023749          218 ALYKEMRDGYAT--AD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLYNASIS  269 (278)
Q Consensus       218 ~~~~er~~~Y~~--AD-~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i~~~~~  269 (278)
                      +..+.+...++.  .. .+||             .+.++|+|.++|...+.+.+.
T Consensus       156 r~~~~Y~~l~~~~~~~~~~ID-------------a~~~~e~V~~~I~~~v~~~l~  197 (209)
T d1nn5a_         156 RALRCFHQLMKDTTLNWKMVD-------------ASKSIEAVHEDIRVLSEDAIA  197 (209)
T ss_dssp             HHHHHHHHHTTCTTSCEEEEE-------------TTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCEEEEE-------------CCCCHHHHHHHHHHHHHHHHH
Confidence            333332232332  12 4667             357999999999999887764

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.29  E-value=4.7e-12  Score=107.16  Aligned_cols=38  Identities=24%  Similarity=0.182  Sum_probs=34.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHh
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA  132 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~  132 (278)
                      ..|.|+|.+||||||+|+.|. ++|++++|+|.+.++.+
T Consensus         3 ~iIgITG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~   40 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT-DLGVPLVDADVVAREVV   40 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH-TTTCCEEEHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCeEEEchHHHHHHH
Confidence            578899999999999999996 58999999999987755

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.29  E-value=2.7e-12  Score=102.01  Aligned_cols=132  Identities=13%  Similarity=0.133  Sum_probs=73.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHH-hCCceecCchHHHHHhCCCChH-HHHHhhchhHhHHHHHHHHHHHHcC---CCEE
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADA-LRYYYFDSDSLVFEAAGGESAA-KAFRESDEKGYQQAETEVLKQLSSM---GRLV  167 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~-Lg~~~iD~D~li~~~~g~~~i~-ei~~~~ge~~fr~~e~~vl~~l~~~---~~~V  167 (278)
                      .++|+|+|+|||||||+|+.|.+. .|+.+++.|++.+...+..... ..+...............+......   ...+
T Consensus         2 kklIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   81 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGV   81 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHhhccCCCc
Confidence            467999999999999999988654 5789999999887765421110 0000111111222223334444332   2234


Q ss_pred             EEeCCceeechhHH----Hhhh----CCcEEEEEcCHHHHHhh-hcCCCCCCChHHHHHHHHHHhhhcc
Q 023749          168 VCAGNGAVQSSANL----ALLR----HGISLWIDVPPGMVARM-DHSGFPESEVLPQLFALYKEMRDGY  227 (278)
Q Consensus       168 I~~g~g~v~~~~~~----~~L~----~~~vV~L~a~~e~l~~R-~~r~rp~~~~~~~l~~~~~er~~~Y  227 (278)
                      |..+..  .....+    +.++    ...+|||++|.+++.+| ..|+... ...+.+.++++..+.++
T Consensus        82 i~d~~~--~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~-~~~~~i~~~~~~~~~~~  147 (152)
T d1ly1a_          82 IISDTN--LNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKA-VPIDVLRSMYKSMREYL  147 (152)
T ss_dssp             EECSCC--CSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGGC-CCHHHHHHHHHHHHHHH
T ss_pred             cccccc--CCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHccCCCC-CCHHHHHHHHHHHHhhc
Confidence            433322  122222    1222    23689999999999999 5554322 12355666666554443

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=3.1e-12  Score=108.65  Aligned_cols=38  Identities=21%  Similarity=0.179  Sum_probs=34.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhC
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG  133 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g  133 (278)
                      .|.|+|++||||||+++.|+ ++|++++|+|.+.++.+.
T Consensus         5 iIgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~   42 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVVE   42 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTTS
T ss_pred             EEEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHHh
Confidence            78899999999999999996 689999999999887653

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=4e-11  Score=101.13  Aligned_cols=70  Identities=14%  Similarity=0.118  Sum_probs=46.4

Q ss_pred             CCcEEEEEcCHHHHHhh-hcCCCC---CCChHHHHHHHHHHhhhcccc-Cc-EEEecCcccccccccCCCCCCHHHHHHH
Q 023749          186 HGISLWIDVPPGMVARM-DHSGFP---ESEVLPQLFALYKEMRDGYAT-AD-VTVSLQKVASQLGYDDLDAVTTEDMTLE  259 (278)
Q Consensus       186 ~~~vV~L~a~~e~l~~R-~~r~rp---~~~~~~~l~~~~~er~~~Y~~-AD-~vId~~~va~~~~~~Dts~~tpeeva~~  259 (278)
                      ++++|||++|++++.+| .+|+..   ..+..+.+.++.+....+++. .. .+||             ++.++|++.++
T Consensus       132 pdl~i~Ld~~~e~~~~Ri~~R~~~~~~~~~~~~~~~~v~~~y~~~~~~~~~~~~ID-------------a~~~~e~v~~~  198 (210)
T d4tmka_         132 PDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLELAAQDKSIHTID-------------ATQPLEAVMDA  198 (210)
T ss_dssp             CSEEEEEECCHHHHHHHHHHHSSCCTTTTSCHHHHHHHHHHHHHHHHTCTTEEEEE-------------TTSCHHHHHHH
T ss_pred             CceEEEecchHHHHHHHhhhccccchhhhccHHHHHHHHHHHHHHHhcCCCEEEEE-------------CCCCHHHHHHH
Confidence            68999999999999999 545432   223345555443333333332 23 4666             35799999999


Q ss_pred             HHHHhhhcC
Q 023749          260 VKWLYNASI  268 (278)
Q Consensus       260 I~~~i~~~~  268 (278)
                      |.+.+...+
T Consensus       199 I~~~i~~~l  207 (210)
T d4tmka_         199 IRTTVTHWV  207 (210)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988654

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=2.5e-11  Score=101.67  Aligned_cols=38  Identities=26%  Similarity=0.290  Sum_probs=35.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE  130 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~  130 (278)
                      .++|+|.|||||||||+|+.||+++|++|+++++++++
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~   40 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRV   40 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHH
Confidence            45899999999999999999999999999999999875

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=4.7e-11  Score=100.63  Aligned_cols=28  Identities=11%  Similarity=-0.047  Sum_probs=25.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      |-+|.|+|++||||||+|+.|++.+|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~   29 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQN   29 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            5688999999999999999999999754

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=3.2e-10  Score=93.55  Aligned_cols=90  Identities=16%  Similarity=0.050  Sum_probs=59.0

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEe
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA  170 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~  170 (278)
                      -.+..|+++|+|||||||+|+.|++.+|+.+++.|++..       ...            +...+-..+....+.|++.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~-------~~~------------~~~~~~~~l~~g~~vIiD~   72 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGS-------WQR------------CVSSCQAALRQGKRVVIDN   72 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCS-------HHH------------HHHHHHHHHHTTCCEEEES
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHH-------HHH------------HHHHHHHHHHCCCCceeeC
Confidence            357899999999999999999999999999999887631       111            1111112333445555553


Q ss_pred             CCceeechhHHH----hhh-CC---cEEEEEcCHHHHHhh
Q 023749          171 GNGAVQSSANLA----LLR-HG---ISLWIDVPPGMVARM  202 (278)
Q Consensus       171 g~g~v~~~~~~~----~L~-~~---~vV~L~a~~e~l~~R  202 (278)
                      ..   .....+.    ..+ .+   .+||+++|.+++.+|
T Consensus        73 t~---~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~~~R  109 (172)
T d1yj5a2          73 TN---PDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHN  109 (172)
T ss_dssp             CC---CSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHH
T ss_pred             cC---CCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHH
Confidence            32   1222222    122 22   579999999999998

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=9e-10  Score=93.30  Aligned_cols=32  Identities=13%  Similarity=0.020  Sum_probs=27.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      +.+.|+|.|+.||||||+++.|++.|.-..+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~~~~~~   32 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVV   32 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHhcCCCe
Confidence            46899999999999999999999988644443

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=2.6e-09  Score=90.81  Aligned_cols=28  Identities=21%  Similarity=0.349  Sum_probs=26.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      +|+.|+|.|+.||||||+++.|++.|..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            6899999999999999999999999854

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.00  E-value=3.7e-09  Score=84.52  Aligned_cols=36  Identities=17%  Similarity=0.021  Sum_probs=32.4

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCch
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS  126 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~  126 (278)
                      ...+.|+|+|+|||||||+|+.||+++|++++..+.
T Consensus         5 ~~~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~   40 (192)
T d1lw7a2           5 FFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYG   40 (192)
T ss_dssp             GTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeeh
Confidence            456889999999999999999999999999987654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.97  E-value=2.3e-10  Score=93.60  Aligned_cols=29  Identities=24%  Similarity=0.179  Sum_probs=24.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCce
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYY  121 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~  121 (278)
                      +..|.|+|++||||||+|+.|++.++...
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~~l~~~~   50 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQTLREQG   50 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence            34577999999999999999999887543

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.92  E-value=2.4e-09  Score=88.95  Aligned_cols=28  Identities=21%  Similarity=0.154  Sum_probs=24.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHh---CCce
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADAL---RYYY  121 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~L---g~~~  121 (278)
                      +.|+|.|+.||||||+++.|++.|   |+++
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v   31 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSV   31 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
Confidence            579999999999999999999977   5544

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.90  E-value=1e-09  Score=90.33  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=23.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      |+.|+|+||+||||||+++.|.+.+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            7899999999999999999999886

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=9.9e-08  Score=80.81  Aligned_cols=31  Identities=13%  Similarity=0.068  Sum_probs=27.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCcee
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i  122 (278)
                      .|+.|+|.|+.||||||+++.|++.|+-..+
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~~l~~~~i   31 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence            3789999999999999999999999975544

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.84  E-value=5.4e-09  Score=86.21  Aligned_cols=32  Identities=13%  Similarity=0.013  Sum_probs=27.7

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCcee
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i  122 (278)
                      =+++.|+|.|+.||||||+++.|++.++-..+
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~   38 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYKNDICL   38 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            45778999999999999999999999875443

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.59  E-value=4.3e-08  Score=87.29  Aligned_cols=37  Identities=11%  Similarity=0.143  Sum_probs=27.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh---CC--ceecCchHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSLV  128 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~--~~iD~D~li  128 (278)
                      +..+|.|+|.+||||||+++.|++.+   |.  .+++.|++.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            34689999999999999999998866   34  378888875

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=9.6e-09  Score=84.98  Aligned_cols=65  Identities=14%  Similarity=0.026  Sum_probs=40.1

Q ss_pred             cEEEEEcCHHHHHhh-hcCCCCCCC-hHHHHHHHHHHhhhccc-cCcEEEecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749          188 ISLWIDVPPGMVARM-DHSGFPESE-VLPQLFALYKEMRDGYA-TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       188 ~vV~L~a~~e~l~~R-~~r~rp~~~-~~~~l~~~~~er~~~Y~-~AD~vId~~~va~~~~~~Dts~~tpeeva~~I~~~i  264 (278)
                      +++++..+.+++.+| .+|++...+ ....+.....+....+. ..|.+|.|              .+.++++.+|.++|
T Consensus       117 ~i~~~~~~~e~l~~RL~~Rg~~~~~~I~~Rl~~~~~e~~~~~~~~fd~vI~N--------------~dle~a~~~l~~iI  182 (186)
T d1gkya_         117 FLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVN--------------DDLDKAYKELKDFI  182 (186)
T ss_dssp             EEEEECSCHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHTTTCSSEEEEC--------------SSHHHHHHHHHHHH
T ss_pred             EEEecCCcHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhcCCCEEEEC--------------cCHHHHHHHHHHHH
Confidence            456677889999999 767664322 22233332223222222 35888874              36999999999988


Q ss_pred             hh
Q 023749          265 NA  266 (278)
Q Consensus       265 ~~  266 (278)
                      .+
T Consensus       183 ~~  184 (186)
T d1gkya_         183 FA  184 (186)
T ss_dssp             HT
T ss_pred             Hh
Confidence            64

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.54  E-value=9.1e-08  Score=78.62  Aligned_cols=41  Identities=22%  Similarity=0.248  Sum_probs=33.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCc-----eecCchHHHHHhC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYY-----YFDSDSLVFEAAG  133 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~-----~iD~D~li~~~~g  133 (278)
                      |..|+++|.|||||||+|+.|++.+++.     .++.|.+.....+
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~~~   47 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVK   47 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhhcc
Confidence            6789999999999999999999998754     4566776665544

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=6.8e-07  Score=75.23  Aligned_cols=26  Identities=23%  Similarity=0.156  Sum_probs=24.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|+.|+|+||+||||||+.+.|.+..
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999999999875

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=2.3e-07  Score=76.80  Aligned_cols=24  Identities=33%  Similarity=0.206  Sum_probs=22.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhC
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      .|+|+||+||||||+++.|++.++
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCC
Confidence            489999999999999999999876

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=2.1e-06  Score=76.85  Aligned_cols=46  Identities=11%  Similarity=0.052  Sum_probs=34.2

Q ss_pred             HHHhhhhcc---CCcEEEEEccCCCcHHHHHHHHHHHhC-------CceecCchHH
Q 023749           83 KAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV  128 (278)
Q Consensus        83 ~~~~~~~~~---~~~~I~L~G~~GSGKSTlAk~LAe~Lg-------~~~iD~D~li  128 (278)
                      ....|++.-   .+.+|.|.|++||||||+|+.|++.|.       ...+++|+++
T Consensus        67 ~~~~fl~~~~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~  122 (308)
T d1sq5a_          67 VLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             HHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             HHHHHhcccCCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeE
Confidence            334455433   345888999999999999999999884       2357888875

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=98.28  E-value=4.3e-06  Score=75.41  Aligned_cols=25  Identities=20%  Similarity=0.162  Sum_probs=20.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      .+|+|.|+.||||||+++.|++.++
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC---
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHhC
Confidence            4699999999999999999998875

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=98.24  E-value=6.5e-06  Score=74.24  Aligned_cols=28  Identities=14%  Similarity=0.065  Sum_probs=24.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      ..+|+|.|+.||||||+++.|++.++..
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~l~~~   32 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHHFAIT   32 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            4579999999999999999999988653

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=98.24  E-value=9.6e-05  Score=56.24  Aligned_cols=143  Identities=15%  Similarity=0.317  Sum_probs=87.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCCCEEEEeC--
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG--  171 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~~~VI~~g--  171 (278)
                      +.|++.||..+=|||+|..|++.|.+|.+....+--...|           .+..|     +....++...+.||+.-  
T Consensus         1 tliilegpdccfkstvaaklskelkypiikgssfelaksg-----------neklf-----ehfnkladednviidrfvy   64 (164)
T d2axpa1           1 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSG-----------NEKLF-----EHFNKLADEDNVIIDRFVY   64 (164)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHHHTCCEEECCCHHHHHHC-----------HHHHH-----HHHHHHTTCCSEEEESCHH
T ss_pred             CeEEEeCCchhhHHHHHHHHHhhhcCceecCchhhhhhcc-----------CHHHH-----HHHHhhccccceeeehhhh
Confidence            3689999999999999999999999999875443211122           12222     22455666666666521  


Q ss_pred             ----------CceeechhHHHhh----h-CCcEEEEEcCHHHHHhh-hcCCCC--CCChHHHHHHHHHHhhhccccCcEE
Q 023749          172 ----------NGAVQSSANLALL----R-HGISLWIDVPPGMVARM-DHSGFP--ESEVLPQLFALYKEMRDGYATADVT  233 (278)
Q Consensus       172 ----------~g~v~~~~~~~~L----~-~~~vV~L~a~~e~l~~R-~~r~rp--~~~~~~~l~~~~~er~~~Y~~AD~v  233 (278)
                                .-.++.++.+..+    + ...+|||++++.++.+| .-|+-.  .....+.+..+|.+-...-......
T Consensus        65 snlvyakkfkdysilterqlrfiedkikakakvvylhadpsvikkrlrvrgdeyiegkdidsilelyrevmsnaglhtys  144 (164)
T d2axpa1          65 SNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILELYREVMSNAGLHTYS  144 (164)
T ss_dssp             HHHHHTTTBSSCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHTCSSCCSSHHHHHHHHHHHHHHTCSSCEEE
T ss_pred             hhhHHHhhcccceehhHHHHHHHHHHhhhheeEEEEecChHHHHHHhccccccccccCCHHHHHHHHHHHHhcCCceeee
Confidence                      1112333443333    2 35799999999999999 444322  2222344445555533211123334


Q ss_pred             EecCcccccccccCCCCCCHHHHHHHHHHHh
Q 023749          234 VSLQKVASQLGYDDLDAVTTEDMTLEVKWLY  264 (278)
Q Consensus       234 Id~~~va~~~~~~Dts~~tpeeva~~I~~~i  264 (278)
                      -|            |..-+.+|++..|.-.+
T Consensus       145 wd------------tgqwssdeiakdiiflv  163 (164)
T d2axpa1         145 WD------------TGQWSSDEIAKDIIFLV  163 (164)
T ss_dssp             EE------------TTTSCHHHHHHHHHHHH
T ss_pred             cc------------cCCcchHHhhhheeEee
Confidence            44            88999999999887654

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.18  E-value=1e-06  Score=68.48  Aligned_cols=106  Identities=11%  Similarity=0.087  Sum_probs=67.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC----Cc---eecCchHHHHHhCCCChHHHHHhhchhHhHHHHHHHHHHHHcCC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR----YY---YFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG  164 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg----~~---~iD~D~li~~~~g~~~i~ei~~~~ge~~fr~~e~~vl~~l~~~~  164 (278)
                      +|-.|+++|.+||||||+|+.|...|.    -+   .+|.|.+.+                 ..|      +..++... 
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni~r-----------------i~f------va~e~~k~-   60 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNKTE-----------------LLS------LIQDFIGS-   60 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTCHH-----------------HHT------THHHHHHT-
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCHHH-----------------HHH------HHHHHHhc-
Confidence            578999999999999999999977662    12   244432211                 011      11222221 


Q ss_pred             CEEEEeCCceeechhHHHhhhCCcEEEEEcCHHHHHhhhcCCCCCCChHHHHHHHHHHhhhccccCcEEEecCccccccc
Q 023749          165 RLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDHSGFPESEVLPQLFALYKEMRDGYATADVTVSLQKVASQLG  244 (278)
Q Consensus       165 ~~VI~~g~g~v~~~~~~~~L~~~~vV~L~a~~e~l~~R~~r~rp~~~~~~~l~~~~~er~~~Y~~AD~vId~~~va~~~~  244 (278)
                            |+              +++|+...|.|.+.+|++++...              ...+..+|++||         
T Consensus        61 ------G~--------------~~iv~~~~p~e~~~~~d~~g~y~--------------~~~~~npDLvId---------   97 (122)
T d1g8fa3          61 ------GS--------------GLIIPDQWEDDKDSVVGKQNVYL--------------LDTSSSADIQLE---------   97 (122)
T ss_dssp             ------TC--------------EEEESSCCCGGGGGGSCCTTEEE--------------EESSTTCSEECS---------
T ss_pred             ------CC--------------EEEEecCCcHHHHHhcCCCCeEE--------------ecCCCCCCeEEE---------
Confidence                  21              23455667777777765444320              112347999987         


Q ss_pred             ccCCCCCCHHHHHHHHHHHhhhc
Q 023749          245 YDDLDAVTTEDMTLEVKWLYNAS  267 (278)
Q Consensus       245 ~~Dts~~tpeeva~~I~~~i~~~  267 (278)
                         |+..++++++++|+.++.+.
T Consensus        98 ---T~~~sVee~V~qII~yLee~  117 (122)
T d1g8fa3          98 ---SADEPISHIVQKVVLFLEDN  117 (122)
T ss_dssp             ---STTCCHHHHHHHHHHHHHHT
T ss_pred             ---CCCCCHHHHHHHHHHHHHHC
Confidence               78999999999999999753

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.06  E-value=1.1e-06  Score=74.31  Aligned_cols=37  Identities=14%  Similarity=0.249  Sum_probs=32.3

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceec-CchHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFD-SDSLVFE  130 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD-~D~li~~  130 (278)
                      +.|.|+|.+||||||+|+.|++++|++++| .|.+.+.
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~~   39 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDA   39 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHHH
Confidence            479999999999999999999999999999 4655544

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=98.05  E-value=2.8e-05  Score=70.01  Aligned_cols=27  Identities=22%  Similarity=0.269  Sum_probs=24.1

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      -.+|+|.|+.|+||||+++.|++.++.
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l~~   32 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAASG   32 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHhcc
Confidence            357999999999999999999998853

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.02  E-value=1.3e-06  Score=74.28  Aligned_cols=38  Identities=21%  Similarity=0.180  Sum_probs=31.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCc--eecCchHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYY--YFDSDSLVF  129 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~--~iD~D~li~  129 (278)
                      .++.|+|.|||||||||+|+.||+.++..  .+++|.+..
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~   70 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ   70 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHH
Confidence            35679999999999999999999999655  456666643

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.97  E-value=4.1e-06  Score=70.41  Aligned_cols=46  Identities=26%  Similarity=0.117  Sum_probs=35.6

Q ss_pred             HHHHHHHHhhhhc-----cCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           78 FAVKKKAADISTE-----LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        78 ~~~~~~~~~~~~~-----~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      ..++++..++...     -....++|.||||+||||+|+.||+.++++++.
T Consensus        15 e~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~   65 (238)
T d1in4a2          15 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV   65 (238)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccCCCccc
Confidence            4566666666521     134579999999999999999999999998764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.90  E-value=8.9e-06  Score=70.11  Aligned_cols=33  Identities=30%  Similarity=0.394  Sum_probs=29.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D  125 (278)
                      ++.|+|.||||+|||++|+.||+.+|++++..+
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~~~~~~~i~   74 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEARVPFITAS   74 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEecCCCCChhHHHHHHHHHcCCCEEEEE
Confidence            567999999999999999999999999987654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.88  E-value=6.2e-06  Score=69.41  Aligned_cols=33  Identities=21%  Similarity=0.130  Sum_probs=29.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      ..+.++|.||||+||||+|+.+|+.+++++...
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~   66 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT   66 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence            456899999999999999999999999987654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.85  E-value=3.8e-06  Score=78.61  Aligned_cols=37  Identities=16%  Similarity=0.299  Sum_probs=33.7

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D  125 (278)
                      .++.+++|+++||+|||||.+|+.||+.++.||+-.|
T Consensus        45 ~ei~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~d   81 (443)
T d1g41a_          45 HEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   81 (443)
T ss_dssp             TTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             cccccccEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence            6778999999999999999999999999999997543

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=8.4e-06  Score=70.72  Aligned_cols=37  Identities=27%  Similarity=0.336  Sum_probs=31.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceec--CchHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVF  129 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD--~D~li~  129 (278)
                      ++.|+|.||||+|||++++.+|+.+|++++.  ..++..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~   83 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE   83 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhh
Confidence            5779999999999999999999999999854  444443

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.81  E-value=5e-06  Score=73.79  Aligned_cols=34  Identities=15%  Similarity=0.266  Sum_probs=30.1

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      ..+..|+|+||||+|||.+||.||+.++.+++..
T Consensus        47 ~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i   80 (309)
T d1ofha_          47 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKV   80 (309)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHhhccccchhcc
Confidence            3678899999999999999999999999886543

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.80  E-value=6.8e-06  Score=70.76  Aligned_cols=33  Identities=24%  Similarity=0.222  Sum_probs=29.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D  125 (278)
                      .+.|+|.||||+|||++|+.||..+|++++..+
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~   72 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC   72 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhcccccccccc
Confidence            456999999999999999999999999988653

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=0.0001  Score=59.98  Aligned_cols=26  Identities=15%  Similarity=0.254  Sum_probs=23.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +.+.|+|+||+||||+|+.+.|.+..
T Consensus         2 m~k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           2 MRKTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHhC
Confidence            35789999999999999999998765

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=2.1e-05  Score=67.77  Aligned_cols=34  Identities=18%  Similarity=0.284  Sum_probs=30.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D  125 (278)
                      .++.|+|.||||+|||++++.+|..++++++..+
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~   70 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN   70 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCceeEEecCCCCCchHHHHHHHHHhCCeEEEEE
Confidence            4678999999999999999999999999988754

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.71  E-value=8.6e-06  Score=64.77  Aligned_cols=27  Identities=22%  Similarity=0.202  Sum_probs=24.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      ++|+|+|++||||||+.+.++..++..
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCCC
Confidence            579999999999999999999988654

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=1e-05  Score=63.53  Aligned_cols=24  Identities=29%  Similarity=0.145  Sum_probs=22.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHh
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ++|+|+|++||||||+++.|+++|
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            579999999999999999999876

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=9.3e-06  Score=63.92  Aligned_cols=24  Identities=33%  Similarity=0.310  Sum_probs=22.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHh
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ++|+|+|++|+||||+++.+++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            689999999999999999999987

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=1.3e-05  Score=67.45  Aligned_cols=32  Identities=22%  Similarity=0.225  Sum_probs=28.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      ..+.++|.||||+||||+++.||+.+++.++.
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~   82 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILE   82 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHhhhhc
Confidence            44689999999999999999999999987653

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.63  E-value=2.7e-05  Score=65.02  Aligned_cols=43  Identities=16%  Similarity=0.006  Sum_probs=35.8

Q ss_pred             cHHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           77 SFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      +..++++...+...-...+++|.||||+||||+++.+|+.++.
T Consensus        29 ~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~~   71 (231)
T d1iqpa2          29 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG   71 (231)
T ss_dssp             CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             cHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHHh
Confidence            3567777777776666778999999999999999999998754

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.62  E-value=2.9e-05  Score=70.52  Aligned_cols=70  Identities=13%  Similarity=-0.025  Sum_probs=48.8

Q ss_pred             eecccccCCccccccccccCCcc---------------HHHHHHHHhhh-----hccCCcEEEEEccCCCcHHHHHHHHH
Q 023749           55 TTRSIADDTTSNTVTKVAAEDPS---------------FAVKKKAADIS-----TELKGTSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~-----~~~~~~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      +++.|.+|....||........+               ..++.++.+++     +..++++++|.||||+|||++|+.||
T Consensus        96 i~~~~~~~~~~~p~~~~~~~~~d~~~~~~il~~l~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~  175 (362)
T d1svma_          96 LTNRFNDLLDRMDIMFGSTGSADIEEWMAGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALL  175 (362)
T ss_dssp             HHHHHHHHHHHHHHHTSTTCCCCHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHHHHHHhhCccccccccccCHHHHHHHHHHHHhcccchHHHHHHHHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHH
Confidence            44566666665555433321111               23455555554     44577899999999999999999999


Q ss_pred             HHhCCceecC
Q 023749          115 DALRYYYFDS  124 (278)
Q Consensus       115 e~Lg~~~iD~  124 (278)
                      ..+|.+++..
T Consensus       176 ~~~~~~~i~i  185 (362)
T d1svma_         176 ELCGGKALNV  185 (362)
T ss_dssp             HHHCCEEECC
T ss_pred             HHcCCCEEEE
Confidence            9999999864

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=2.8e-05  Score=67.35  Aligned_cols=37  Identities=19%  Similarity=0.184  Sum_probs=32.3

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D  125 (278)
                      +...++.|+|.|+||+|||++++.||..+|++++..+
T Consensus        37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~   73 (265)
T d1r7ra3          37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK   73 (265)
T ss_dssp             CCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEE
Confidence            3345678999999999999999999999999988764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.57  E-value=2.8e-05  Score=64.72  Aligned_cols=43  Identities=19%  Similarity=0.081  Sum_probs=34.0

Q ss_pred             HHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      ..++++...+...=.-.+++|.||||+||||+|+.|++.++..
T Consensus        21 ~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~   63 (224)
T d1sxjb2          21 KETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR   63 (224)
T ss_dssp             THHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHhcc
Confidence            4556666677654445579999999999999999999998754

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.22  E-value=0.00016  Score=58.32  Aligned_cols=39  Identities=23%  Similarity=0.181  Sum_probs=31.4

Q ss_pred             HHHHhhhhcc------CCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           82 KKAADISTEL------KGTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        82 ~~~~~~~~~~------~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      +-+..+++.|      +|.+|+|.|..||||||++|.+++.||+.
T Consensus        16 ~lg~~la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          16 RFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             HHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            3345555444      46689999999999999999999999975

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.00016  Score=59.76  Aligned_cols=42  Identities=19%  Similarity=-0.001  Sum_probs=32.3

Q ss_pred             HHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      ..+++....+...=....++|.|++|+||||+++.+++.++.
T Consensus        20 ~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~~   61 (227)
T d1sxjc2          20 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG   61 (227)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhhc
Confidence            456666666664434446889999999999999999998753

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.20  E-value=0.00011  Score=61.34  Aligned_cols=27  Identities=19%  Similarity=0.036  Sum_probs=24.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      .+..++|.|+||+||||+++.|++.+.
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            457899999999999999999999884

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.14  E-value=0.00016  Score=59.75  Aligned_cols=37  Identities=14%  Similarity=-0.024  Sum_probs=27.1

Q ss_pred             HHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           81 KKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        81 ~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ++....+...-....++|.||+|+||||+++.+++.+
T Consensus        21 ~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          21 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHH
Confidence            3333334333334568999999999999999999986

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=97.13  E-value=0.00013  Score=66.17  Aligned_cols=34  Identities=26%  Similarity=0.281  Sum_probs=30.6

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHHHhCCceec
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD  123 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD  123 (278)
                      +....+|+++||.|+|||.+||.||+.++.+++-
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA~~~~~~~ir   98 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAI   98 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHHhhcccceee
Confidence            5678899999999999999999999999888654

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.12  E-value=0.00014  Score=57.59  Aligned_cols=24  Identities=25%  Similarity=0.122  Sum_probs=21.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHh
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +.|.|+|.+||||||+...|..+|
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            467799999999999999998876

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00016  Score=64.10  Aligned_cols=30  Identities=23%  Similarity=0.181  Sum_probs=27.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      .++|+||+|+|||.+|+.||+.++.+++..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~~~~i~~   83 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALGIELLRF   83 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             EEEEECCCcchhHHHHHHHHhhccCCeeEe
Confidence            688999999999999999999999887643

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.02  E-value=0.00037  Score=58.02  Aligned_cols=42  Identities=14%  Similarity=0.051  Sum_probs=31.8

Q ss_pred             cHHHHHHHHhhhh-ccCCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           77 SFAVKKKAADIST-ELKGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        77 ~~~~~~~~~~~~~-~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      +..++++...+.. .-....++|.|++|+||||+++.+++.+.
T Consensus        16 ~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l~   58 (252)
T d1sxje2          16 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF   58 (252)
T ss_dssp             CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred             cHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhhc
Confidence            3566666666652 22344689999999999999999999873

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.00  E-value=0.0002  Score=62.95  Aligned_cols=36  Identities=17%  Similarity=0.166  Sum_probs=28.7

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh--------CCceecCchHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL--------RYYYFDSDSLV  128 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L--------g~~~iD~D~li  128 (278)
                      +..|.|.|++||||||++..|.+.|        ...+++.|++.
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY   70 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   70 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCC
Confidence            5578899999999999998887665        24457899873

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.90  E-value=0.0025  Score=52.84  Aligned_cols=51  Identities=18%  Similarity=0.231  Sum_probs=33.2

Q ss_pred             HHHHHHHhhhhccCC--cEEEEEccCCCcHHHHHHHHHHHhC-----CceecCchHHH
Q 023749           79 AVKKKAADISTELKG--TSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF  129 (278)
Q Consensus        79 ~~~~~~~~~~~~~~~--~~I~L~G~~GSGKSTlAk~LAe~Lg-----~~~iD~D~li~  129 (278)
                      ....-+..+......  ..++|.|++|+|||.++..++..+.     ..+++..++..
T Consensus        20 ~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~   77 (213)
T d1l8qa2          20 LAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ   77 (213)
T ss_dssp             HHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             HHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHH
Confidence            333444445443333  2389999999999999999998763     33555555443

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.82  E-value=0.00055  Score=56.74  Aligned_cols=32  Identities=19%  Similarity=0.326  Sum_probs=28.2

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCcee
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYF  122 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~i  122 (278)
                      ..+++|+|.|++|+|||++++.+++.++..+.
T Consensus        27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~   58 (283)
T d2fnaa2          27 LRAPITLVLGLRRTGKSSIIKIGINELNLPYI   58 (283)
T ss_dssp             TCSSEEEEEESTTSSHHHHHHHHHHHHTCCEE
T ss_pred             ccCCEEEEEcCCCCcHHHHHHHHHHHCCCCeE
Confidence            35789999999999999999999999987654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.72  E-value=0.00023  Score=59.50  Aligned_cols=24  Identities=25%  Similarity=0.156  Sum_probs=20.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhC
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      .++|+|+||+|||++++.+++.++
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            355679999999999999999874

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.65  E-value=0.00047  Score=56.35  Aligned_cols=36  Identities=17%  Similarity=0.190  Sum_probs=31.4

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l  127 (278)
                      +.|+-|+|+|.+|+||||+|-.|.++ |+.++.-|.+
T Consensus        12 ~~g~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD~~   47 (176)
T d1kkma_          12 IYGLGVLITGDSGVGKSETALELVQR-GHRLIADDRV   47 (176)
T ss_dssp             ETTEEEEEECCTTSCHHHHHHHHHHT-TCEEEEEEEE
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEecCeE
Confidence            57889999999999999999999875 9998876654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.59  E-value=0.0006  Score=56.12  Aligned_cols=25  Identities=28%  Similarity=0.227  Sum_probs=21.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      ++|+|+|++||||||+.+.|.+.++
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHh
Confidence            3689999999999999999987663

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.00052  Score=58.66  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..|.|+|++||||||+.+.|..-
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            6999999999999999999999653

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.53  E-value=0.00052  Score=61.14  Aligned_cols=44  Identities=20%  Similarity=0.140  Sum_probs=29.9

Q ss_pred             hhhccCCcEEE-EEccCCCcHHHHHHHHHHHhC--Ccee--cCchHHHH
Q 023749           87 ISTELKGTSVF-LVGMNNAIKTHLGKFLADALR--YYYF--DSDSLVFE  130 (278)
Q Consensus        87 ~~~~~~~~~I~-L~G~~GSGKSTlAk~LAe~Lg--~~~i--D~D~li~~  130 (278)
                      +.+.-.++.++ |.|+||+|||.+|+.||.++|  .+|+  +..+++..
T Consensus       116 ~~~~~~~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~  164 (321)
T d1w44a_         116 FGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSG  164 (321)
T ss_dssp             ETTEEEESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTT
T ss_pred             HhhcccCCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhc
Confidence            33333355555 579999999999999999986  5554  44444433

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.52  E-value=0.00054  Score=58.90  Aligned_cols=24  Identities=25%  Similarity=0.445  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+++.|+.
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            689999999999999999999964

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.00079  Score=53.11  Aligned_cols=29  Identities=21%  Similarity=0.064  Sum_probs=25.5

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +-..|..+.|.|+||||||++|-.++-..
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999998654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.47  E-value=0.00059  Score=55.79  Aligned_cols=36  Identities=19%  Similarity=0.271  Sum_probs=30.9

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL  127 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~l  127 (278)
                      +.|+-|+|+|++|+||||+|-.|.+ -|+.++.-|.+
T Consensus        13 ~~g~gvli~G~sG~GKS~lal~l~~-~G~~lvaDD~v   48 (177)
T d1knxa2          13 VFGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAI   48 (177)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEE
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHH-cCCceecCCeE
Confidence            5688999999999999999999987 49998875554

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.42  E-value=0.001  Score=53.95  Aligned_cols=37  Identities=16%  Similarity=0.152  Sum_probs=31.9

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV  128 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li  128 (278)
                      +.|+-|+|+|.+|+||||++-.|.++ |+.++.-|.+.
T Consensus        13 ~~g~gvli~G~sg~GKS~la~~l~~~-g~~li~DD~~~   49 (169)
T d1ko7a2          13 VYGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVE   49 (169)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEeCCeEE
Confidence            57889999999999999999998875 99988766653

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.38  E-value=0.0011  Score=55.38  Aligned_cols=36  Identities=28%  Similarity=0.320  Sum_probs=27.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh---CC--ceecCchH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSL  127 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~--~~iD~D~l  127 (278)
                      ++++|+|+|++|+||||....||..+   |.  -++.+|..
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~   45 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF   45 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccc
Confidence            57899999999999999988888765   22  24556654

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.36  E-value=0.00079  Score=57.16  Aligned_cols=24  Identities=17%  Similarity=0.234  Sum_probs=22.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+.+.++-
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCcchhhHhccC
Confidence            589999999999999999999964

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.00089  Score=57.43  Aligned_cols=25  Identities=28%  Similarity=0.376  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|..-
T Consensus        39 ~Ge~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          39 PGEVTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcc
Confidence            5899999999999999999999653

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.35  E-value=0.00075  Score=57.61  Aligned_cols=25  Identities=12%  Similarity=0.127  Sum_probs=22.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.|+.-
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999999999999999653

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.001  Score=56.52  Aligned_cols=24  Identities=29%  Similarity=0.402  Sum_probs=22.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+.+.++-
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            588999999999999999999965

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.0018  Score=53.52  Aligned_cols=43  Identities=14%  Similarity=0.133  Sum_probs=32.6

Q ss_pred             CCccHHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           74 EDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ...+.++ ++..+++..-...+++|+|+||+|||++...||.++
T Consensus        25 igRd~Ei-~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          25 IGRDEEI-RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CSCHHHH-HHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCcHHHH-HHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHH
Confidence            3344444 445566655567799999999999999999999866

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.31  E-value=0.0011  Score=56.72  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+.+.++.
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~g   51 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAG   51 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            588999999999999999999975

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.31  E-value=0.0012  Score=55.45  Aligned_cols=37  Identities=22%  Similarity=0.162  Sum_probs=27.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCchHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLV  128 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~li  128 (278)
                      ++.+|+|+|++|+||||....||..+   |.+  ++.+|.+.
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R   51 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR   51 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccc
Confidence            56789999999999999988888765   222  45666543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.00098  Score=56.94  Aligned_cols=24  Identities=21%  Similarity=0.160  Sum_probs=22.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+.+.++-
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          30 AGQIYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             SSCEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcC
Confidence            588999999999999999999964

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.24  E-value=0.00091  Score=55.30  Aligned_cols=24  Identities=38%  Similarity=0.315  Sum_probs=22.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|+.||||||+.+.++.
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            588999999999999999999965

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.17  E-value=0.0015  Score=54.42  Aligned_cols=36  Identities=25%  Similarity=0.153  Sum_probs=27.2

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCchHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSLV  128 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~li  128 (278)
                      +.+|+|+|++|+||||....||..+   |..  ++.+|.+.
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R   50 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR   50 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc
Confidence            4567889999999999998898766   332  56677653

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.17  E-value=0.0013  Score=57.20  Aligned_cols=26  Identities=27%  Similarity=0.318  Sum_probs=23.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +|..+.|+|++||||||+.+.|+..+
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCCC
Confidence            69999999999999999999997533

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.14  E-value=0.0012  Score=55.36  Aligned_cols=37  Identities=19%  Similarity=0.068  Sum_probs=24.2

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCchH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSL  127 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~l  127 (278)
                      =.+.+|+|+|++|+||||....||..+   |  ..++.+|..
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~   51 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVY   51 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeecc
Confidence            357789999999999999988888766   2  225666654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.14  E-value=0.0011  Score=56.25  Aligned_cols=24  Identities=25%  Similarity=0.313  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+.+.|+-
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~G   48 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAG   48 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhc
Confidence            588999999999999999999975

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0016  Score=54.48  Aligned_cols=36  Identities=22%  Similarity=0.181  Sum_probs=27.9

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCchHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLV  128 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~li  128 (278)
                      +.+|+|+|++|+||||....||..+   |  .-++.+|.+.
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R   49 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR   49 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc
Confidence            5678899999999999988899765   2  2256777654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0025  Score=53.31  Aligned_cols=43  Identities=19%  Similarity=0.124  Sum_probs=30.5

Q ss_pred             HHHHHHHHhhhhccC-CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           78 FAVKKKAADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        78 ~~~~~~~~~~~~~~~-~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      ..+++.-..+...=. +..++|.|++|+||||+|+.+++.++..
T Consensus        18 ~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~   61 (239)
T d1njfa_          18 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE   61 (239)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCc
Confidence            444444444443222 4458999999999999999999998654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.12  E-value=0.0015  Score=55.67  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=22.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+.+.++.
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~G   54 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAG   54 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHc
Confidence            588999999999999999999975

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.09  E-value=0.0019  Score=49.20  Aligned_cols=23  Identities=26%  Similarity=0.265  Sum_probs=20.3

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      ..|+|+|.+|+||||+...|...
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999753

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.05  E-value=0.0014  Score=56.42  Aligned_cols=24  Identities=13%  Similarity=0.229  Sum_probs=22.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+++.|+-
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHc
Confidence            588999999999999999999964

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0028  Score=54.81  Aligned_cols=42  Identities=19%  Similarity=0.182  Sum_probs=31.2

Q ss_pred             CccHHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           75 DPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ..+.++. +..+++..-...+++|+|+||+|||++...||+++
T Consensus        22 gRd~Ei~-~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          22 GREKELE-RAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SCHHHHH-HHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ChHHHHH-HHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            3344443 34555544556789999999999999999999875

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.04  E-value=0.0014  Score=53.35  Aligned_cols=27  Identities=26%  Similarity=0.107  Sum_probs=24.1

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +-..|+.+.|.|+|||||||+|-.++.
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999999999988864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.00  E-value=0.00089  Score=57.65  Aligned_cols=24  Identities=33%  Similarity=0.492  Sum_probs=22.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+.+.|+.
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHh
Confidence            699999999999999999999865

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.98  E-value=0.0018  Score=56.69  Aligned_cols=26  Identities=23%  Similarity=0.138  Sum_probs=23.2

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .+-+|+|.|+||+||||+|+.++.-|
T Consensus        27 ~~h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          27 GIGGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CCCeEEEECCCCccHHHHHHHHHHhC
Confidence            34579999999999999999999876

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.95  E-value=0.002  Score=52.99  Aligned_cols=29  Identities=21%  Similarity=0.028  Sum_probs=25.7

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +...|..++|.|+|||||||+|-.++...
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999999888654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.95  E-value=0.0012  Score=56.51  Aligned_cols=24  Identities=25%  Similarity=0.319  Sum_probs=22.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+.+.++-
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHc
Confidence            488999999999999999999975

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.94  E-value=0.0016  Score=57.43  Aligned_cols=23  Identities=39%  Similarity=0.452  Sum_probs=21.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHh
Q 023749           95 SVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .++++|++|+|||.+|+.||+.+
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHh
Confidence            67888999999999999999987

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.0025  Score=52.40  Aligned_cols=26  Identities=12%  Similarity=0.019  Sum_probs=23.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      +..++|.|++|+||||+|+.+|+.+-
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            44599999999999999999999884

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.79  E-value=0.004  Score=53.37  Aligned_cols=25  Identities=16%  Similarity=0.129  Sum_probs=22.0

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      ....|.|.||.|.||||+|+.+.+.
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4568899999999999999998765

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.77  E-value=0.0028  Score=53.53  Aligned_cols=30  Identities=20%  Similarity=0.283  Sum_probs=25.3

Q ss_pred             hhhhccCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           86 DISTELKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        86 ~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ++...|+|+..+|+|.+|+||||+-..|..
T Consensus        88 ~L~~~l~~kt~~~~G~SGVGKSTLiN~L~~  117 (225)
T d1u0la2          88 ELKEYLKGKISTMAGLSGVGKSSLLNAINP  117 (225)
T ss_dssp             HHHHHHSSSEEEEECSTTSSHHHHHHHHST
T ss_pred             hHHHHhcCCeEEEECCCCCCHHHHHHhhcc
Confidence            344567899999999999999999998843

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=95.70  E-value=0.0025  Score=54.19  Aligned_cols=25  Identities=36%  Similarity=0.340  Sum_probs=22.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|++||||||+.+.++--
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            5899999999999999999999653

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.003  Score=51.72  Aligned_cols=28  Identities=18%  Similarity=-0.073  Sum_probs=24.9

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +-..|..+.|.|+||+|||++|..++..
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            5668999999999999999999999853

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.66  E-value=0.0035  Score=51.54  Aligned_cols=29  Identities=17%  Similarity=0.134  Sum_probs=25.7

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +-.+|..++|.|+||+|||++|..++...
T Consensus        22 Gi~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          22 GFFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            35579999999999999999999998875

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.60  E-value=0.0033  Score=53.53  Aligned_cols=24  Identities=21%  Similarity=0.235  Sum_probs=20.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHh
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      -.+.|+|++||||||+.+.++.-+
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCChHHHHHHHHHcCC
Confidence            477899999999999999998643

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.59  E-value=0.0028  Score=54.18  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=22.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..+.|+|+.||||||+.+.|+-.
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHCC
Confidence            5889999999999999999999653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.48  E-value=0.0066  Score=53.72  Aligned_cols=26  Identities=15%  Similarity=0.043  Sum_probs=22.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +..+|.|+|+|||||||+-..|...+
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            35679999999999999999998765

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.0028  Score=53.40  Aligned_cols=24  Identities=38%  Similarity=0.354  Sum_probs=22.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +|..+.|+|++||||||+.+.|+.
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            699999999999999999999975

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.38  E-value=0.0048  Score=49.90  Aligned_cols=28  Identities=14%  Similarity=-0.025  Sum_probs=25.2

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ...|..++|.|+||+|||+++-.+|-..
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            5678999999999999999999998755

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.34  E-value=0.008  Score=53.04  Aligned_cols=26  Identities=19%  Similarity=0.147  Sum_probs=22.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ...+|-|+|+||+||||+-..|.+.+
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            34579999999999999999999764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.32  E-value=0.004  Score=52.77  Aligned_cols=26  Identities=27%  Similarity=0.298  Sum_probs=23.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|..+.|+|+.||||||+.+.|+..+
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999999997543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.32  E-value=0.0043  Score=48.08  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=19.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      ..+|+|+|.+|+||||+..+|.
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~   34 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLK   34 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            4579999999999999998884

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.31  E-value=0.0051  Score=46.37  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=19.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+...|..
T Consensus         2 KI~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999975

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.30  E-value=0.0025  Score=54.05  Aligned_cols=30  Identities=17%  Similarity=0.258  Sum_probs=25.9

Q ss_pred             hhhhccCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           86 DISTELKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        86 ~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ++...|+++..+|+|.+|+||||+-..|..
T Consensus        90 ~L~~~l~~~~~vl~G~SGVGKSSLiN~L~~  119 (231)
T d1t9ha2          90 DIIPHFQDKTTVFAGQSGVGKSSLLNAISP  119 (231)
T ss_dssp             TTGGGGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred             HHHHhhccceEEEECCCCccHHHHHHhhcc
Confidence            445678999999999999999999998853

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.24  E-value=0.0055  Score=46.66  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=19.8

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+.+.+..
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhC
Confidence            4699999999999999998865

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.22  E-value=0.0054  Score=47.68  Aligned_cols=23  Identities=30%  Similarity=0.322  Sum_probs=20.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..+|+|+|.+||||||+..+|..
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            35899999999999999999864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.0052  Score=47.17  Aligned_cols=23  Identities=39%  Similarity=0.397  Sum_probs=20.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      |..|+|+|.+|+||||+...|..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            56899999999999999998863

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.16  E-value=0.0056  Score=47.35  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=20.0

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..+|+|+|.+|+||||+...|..
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHcC
Confidence            35799999999999999998853

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.11  E-value=0.0059  Score=48.74  Aligned_cols=21  Identities=24%  Similarity=0.218  Sum_probs=19.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      +.|+|+|.||+||||+-+.|.
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhc
Confidence            479999999999999999996

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.04  E-value=0.0067  Score=48.81  Aligned_cols=26  Identities=19%  Similarity=0.115  Sum_probs=22.4

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHH
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      +-..|..+.|.|+||+|||+++..++
T Consensus        22 Gi~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          22 GLPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            45679999999999999999997654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.84  E-value=0.0077  Score=46.97  Aligned_cols=21  Identities=33%  Similarity=0.347  Sum_probs=19.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+.+.|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999963

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.83  E-value=0.0094  Score=49.86  Aligned_cols=29  Identities=31%  Similarity=0.213  Sum_probs=25.4

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      +.+.|...+|+|.+|+||||++-.||..+
T Consensus        25 G~~pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          25 NMVAGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56778999999999999999999988753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.82  E-value=0.0084  Score=48.25  Aligned_cols=22  Identities=32%  Similarity=0.283  Sum_probs=20.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +.|+|+|.+|+||||+...|..
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            5799999999999999999865

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.80  E-value=0.0093  Score=53.96  Aligned_cols=42  Identities=17%  Similarity=0.150  Sum_probs=31.5

Q ss_pred             CccHHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           75 DPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ..+.++ ++..+++.--...+++|+|+||+|||++...||.++
T Consensus        26 gr~~ei-~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          26 GRDEEI-RRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             SCHHHH-HHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CcHHHH-HHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHH
Confidence            334454 445666655566778999999999999999999864

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.69  E-value=0.0094  Score=46.17  Aligned_cols=21  Identities=14%  Similarity=0.148  Sum_probs=19.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+...+..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998865

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.52  E-value=0.011  Score=49.53  Aligned_cols=28  Identities=11%  Similarity=0.007  Sum_probs=24.5

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      |..+|..++|.|.||+||||++..++-.
T Consensus        31 G~~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          31 GARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             SBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            5667999999999999999999888753

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.49  E-value=0.011  Score=47.00  Aligned_cols=23  Identities=30%  Similarity=0.379  Sum_probs=20.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +.|+|+|.||+||||+-..|...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999754

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.45  E-value=0.011  Score=45.96  Aligned_cols=21  Identities=24%  Similarity=0.265  Sum_probs=19.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+...|..
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            599999999999999999875

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.45  E-value=0.007  Score=53.43  Aligned_cols=26  Identities=23%  Similarity=0.244  Sum_probs=22.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .+++|+++|+.||||||+.+.|....
T Consensus       165 ~~~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         165 IGKNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             HTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             hCCCEEEEeeccccchHHHHHHhhhc
Confidence            46789999999999999999998755

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.012  Score=46.86  Aligned_cols=32  Identities=22%  Similarity=0.183  Sum_probs=25.5

Q ss_pred             cEEEEEcc-CCCcHHHHHHHHHHHh---CCc--eecCc
Q 023749           94 TSVFLVGM-NNAIKTHLGKFLADAL---RYY--YFDSD  125 (278)
Q Consensus        94 ~~I~L~G~-~GSGKSTlAk~LAe~L---g~~--~iD~D  125 (278)
                      |+++|+|- +|+||||++-.||..|   |++  ++|.|
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d   39 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPV   39 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECcc
Confidence            68999997 5999999999999877   555  45543

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=94.39  E-value=0.011  Score=45.99  Aligned_cols=22  Identities=45%  Similarity=0.534  Sum_probs=19.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      ...|+++|.+|+||||+...|.
T Consensus        16 ~~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          16 EVRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEEECCCCCCHHHHHHHHh
Confidence            4579999999999999999884

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=94.39  E-value=0.0064  Score=47.20  Aligned_cols=25  Identities=28%  Similarity=0.206  Sum_probs=21.5

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHH
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      +-....|+|+|.|++||||+.+.|.
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHh
Confidence            3356789999999999999999884

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.31  E-value=0.013  Score=45.86  Aligned_cols=21  Identities=19%  Similarity=0.186  Sum_probs=19.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+...+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            689999999999999998864

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=94.31  E-value=0.013  Score=45.32  Aligned_cols=22  Identities=27%  Similarity=0.344  Sum_probs=19.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...|..
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            3689999999999999999865

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.012  Score=46.44  Aligned_cols=21  Identities=19%  Similarity=0.129  Sum_probs=18.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+...|..
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            589999999999999998863

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.013  Score=45.59  Aligned_cols=21  Identities=24%  Similarity=0.297  Sum_probs=19.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+.+.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999975

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.24  E-value=0.12  Score=41.74  Aligned_cols=23  Identities=13%  Similarity=0.239  Sum_probs=18.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      .+.|+|+||   ||+|+.+.|.+.+.
T Consensus         9 ~Rpivi~Gp---~K~ti~~~L~~~~p   31 (199)
T d1kjwa2           9 ARPIIILGP---TKDRANDDLLSEFP   31 (199)
T ss_dssp             CCCEEEEST---THHHHHHHHHHHCT
T ss_pred             CCCEEEECc---CHHHHHHHHHHhCc
Confidence            466888886   69999999998753

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.22  E-value=0.012  Score=45.98  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=19.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.||+||||+-..|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999963

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.014  Score=45.56  Aligned_cols=21  Identities=14%  Similarity=0.202  Sum_probs=19.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+...+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            599999999999999999864

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.07  E-value=0.016  Score=44.65  Aligned_cols=21  Identities=24%  Similarity=0.275  Sum_probs=19.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+...+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999865

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.06  E-value=0.016  Score=51.72  Aligned_cols=29  Identities=17%  Similarity=0.009  Sum_probs=22.5

Q ss_pred             hhhhccCCcEEEEEccCCCcHHHHHHHHH
Q 023749           86 DISTELKGTSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        86 ~~~~~~~~~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      .+...+.++..+|.|+||+||||+...+.
T Consensus       156 A~~~al~~~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         156 AAAVALTRRISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             HHHHHHTBSEEEEECCTTSTHHHHHHHHH
T ss_pred             HHHHHHcCCeEEEEcCCCCCceehHHHHH
Confidence            34455678899999999999999875543

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.016  Score=44.82  Aligned_cols=21  Identities=14%  Similarity=0.154  Sum_probs=19.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+...+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998865

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=94.00  E-value=0.012  Score=46.06  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=19.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      ...|+++|.+|+||||+-.++.
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTT
T ss_pred             eEEEEEECCCCCCHHHHHHHHh
Confidence            4579999999999999999875

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.00  E-value=0.016  Score=45.01  Aligned_cols=21  Identities=24%  Similarity=0.245  Sum_probs=18.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+...+..
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            589999999999999998864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.016  Score=44.84  Aligned_cols=21  Identities=29%  Similarity=0.197  Sum_probs=19.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+...+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999999865

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.015  Score=44.96  Aligned_cols=23  Identities=17%  Similarity=0.157  Sum_probs=20.4

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .-.|+|+|.+|+||||+..++..
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            34799999999999999999875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.96  E-value=0.017  Score=44.68  Aligned_cols=21  Identities=19%  Similarity=0.251  Sum_probs=19.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+++|.+|+||||+...+..
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999865

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.90  E-value=0.022  Score=48.11  Aligned_cols=23  Identities=9%  Similarity=0.167  Sum_probs=20.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      ....|+|+|.+|+||||++..|.
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~il   53 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSII   53 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCcHHHHHHHHh
Confidence            45689999999999999999984

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.80  E-value=0.029  Score=47.16  Aligned_cols=37  Identities=16%  Similarity=0.237  Sum_probs=27.9

Q ss_pred             HHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        79 ~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .+.+++..++.  .+..|+|.|.+|+||+++|+.|.+..
T Consensus        11 ~~~~~~~~~a~--~~~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          11 EILEKIKKISC--AECPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             HHHHHHHHHTT--CCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhC--CCCCEEEECCCCcCHHHHHHHHHHhc
Confidence            45555655554  34568999999999999999998654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.019  Score=44.90  Aligned_cols=21  Identities=24%  Similarity=0.254  Sum_probs=19.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+...+..
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            599999999999999998854

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.019  Score=44.11  Aligned_cols=21  Identities=19%  Similarity=0.129  Sum_probs=19.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+.+++..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999864

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.023  Score=44.21  Aligned_cols=21  Identities=24%  Similarity=0.208  Sum_probs=19.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+...+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            499999999999999988865

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.67  E-value=0.015  Score=45.84  Aligned_cols=24  Identities=21%  Similarity=0.083  Sum_probs=20.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +.-.|+|+|.+|+|||++.+.+..
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHh
Confidence            345799999999999999998865

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.66  E-value=0.02  Score=44.27  Aligned_cols=23  Identities=17%  Similarity=0.124  Sum_probs=20.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .-.|+|+|.+|+||||+.++|..
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            34699999999999999999865

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.02  Score=44.49  Aligned_cols=21  Identities=19%  Similarity=0.170  Sum_probs=19.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+...+..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            699999999999999998865

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.65  E-value=0.021  Score=44.39  Aligned_cols=22  Identities=18%  Similarity=0.137  Sum_probs=19.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+++|.+|+||||+...|..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999999975

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.021  Score=44.20  Aligned_cols=22  Identities=23%  Similarity=0.211  Sum_probs=19.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      -.|+|+|.+|+||||+...|..
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3699999999999999999865

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=0.02  Score=44.38  Aligned_cols=21  Identities=19%  Similarity=0.123  Sum_probs=18.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+...+..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999998854

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.61  E-value=0.021  Score=44.95  Aligned_cols=21  Identities=24%  Similarity=0.257  Sum_probs=19.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+...+..
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998865

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.58  E-value=0.016  Score=44.92  Aligned_cols=23  Identities=13%  Similarity=0.239  Sum_probs=20.2

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ...|+|+|.+|+||||+...+..
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            35799999999999999999864

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.02  Score=44.46  Aligned_cols=20  Identities=25%  Similarity=0.449  Sum_probs=18.2

Q ss_pred             EEEEEccCCCcHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LA  114 (278)
                      .|+|+|.+|+||||+.+.+.
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~   22 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFG   22 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHh
Confidence            58999999999999999875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.021  Score=44.64  Aligned_cols=22  Identities=23%  Similarity=0.132  Sum_probs=19.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+|||++...+..
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4688999999999999998875

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.51  E-value=0.021  Score=44.70  Aligned_cols=21  Identities=33%  Similarity=0.205  Sum_probs=19.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+.+.|..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            599999999999999999964

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.022  Score=44.48  Aligned_cols=22  Identities=18%  Similarity=0.163  Sum_probs=19.8

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+||||+...+..
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999998865

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=93.48  E-value=0.015  Score=45.65  Aligned_cols=22  Identities=27%  Similarity=0.350  Sum_probs=19.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFL  113 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~L  113 (278)
                      +...|+|+|.+|+||||+...+
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l   37 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRL   37 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHT
T ss_pred             ceEEEEEECCCCCCHHHHHHHH
Confidence            4558999999999999999876

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.44  E-value=0.027  Score=47.18  Aligned_cols=34  Identities=21%  Similarity=0.130  Sum_probs=28.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCc
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSD  125 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D  125 (278)
                      .++.|++.|--|+||||++..||..|   |.+  .+|+|
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            47899999999999999888888776   655  46877

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.38  E-value=0.026  Score=46.64  Aligned_cols=33  Identities=15%  Similarity=0.104  Sum_probs=28.0

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHhCCce
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYY  121 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~  121 (278)
                      +-.+..+|+|.||+++|||+++..|.+.++-..
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~v   81 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV   81 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred             CCCCceEEEEECCCCccHHHHHHHHHHHhCCEE
Confidence            445677999999999999999999999986444

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.025  Score=43.97  Aligned_cols=21  Identities=14%  Similarity=0.059  Sum_probs=19.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+|||++...+..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999875

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.35  E-value=0.024  Score=46.15  Aligned_cols=26  Identities=15%  Similarity=0.280  Sum_probs=24.1

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .+..+++.|++|+||||+|+.|++.+
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999999866

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.25  E-value=0.026  Score=43.74  Aligned_cols=21  Identities=38%  Similarity=0.294  Sum_probs=19.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+|||++.+.+..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            599999999999999998865

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.19  E-value=0.025  Score=44.26  Aligned_cols=23  Identities=26%  Similarity=0.236  Sum_probs=20.3

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +..|+|+|.+|+||||+..+|..
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Confidence            45799999999999999988864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.17  E-value=0.0087  Score=45.77  Aligned_cols=22  Identities=27%  Similarity=0.274  Sum_probs=20.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .|+|+|.+|+||||+..+|...
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.09  E-value=0.025  Score=44.56  Aligned_cols=19  Identities=21%  Similarity=0.356  Sum_probs=18.2

Q ss_pred             EEEEEccCCCcHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFL  113 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~L  113 (278)
                      .|+|+|.+||||||+..++
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999999

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=93.08  E-value=0.029  Score=43.63  Aligned_cols=22  Identities=23%  Similarity=0.193  Sum_probs=19.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      -.|+|+|.+|+||||+.+.+..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999999864

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.07  E-value=0.018  Score=45.27  Aligned_cols=21  Identities=29%  Similarity=0.279  Sum_probs=18.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|.|+|.|++||||+...|..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999998853

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.07  E-value=0.029  Score=43.88  Aligned_cols=24  Identities=17%  Similarity=0.230  Sum_probs=20.6

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..-.|+|+|.+|+||||+.+.|..
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHh
Confidence            344699999999999999998864

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.06  E-value=0.025  Score=43.73  Aligned_cols=21  Identities=29%  Similarity=0.192  Sum_probs=18.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+-.+|..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            388999999999999999964

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.04  E-value=0.028  Score=44.73  Aligned_cols=21  Identities=24%  Similarity=0.284  Sum_probs=19.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+...+..
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhh
Confidence            589999999999999998864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.027  Score=43.92  Aligned_cols=21  Identities=29%  Similarity=0.428  Sum_probs=18.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+|||++...+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998853

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.97  E-value=0.031  Score=43.26  Aligned_cols=22  Identities=14%  Similarity=0.125  Sum_probs=19.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      -.|+|+|.+|+|||++...+..
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999998864

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.95  E-value=0.028  Score=43.41  Aligned_cols=22  Identities=14%  Similarity=0.166  Sum_probs=19.8

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      -.|+|+|.+|+|||++...+..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            3699999999999999999865

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.89  E-value=0.044  Score=47.56  Aligned_cols=35  Identities=26%  Similarity=0.255  Sum_probs=30.0

Q ss_pred             HHHhh-hhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           83 KAADI-STELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        83 ~~~~~-~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      |+.+. .|-.+|.++.|.|++|+|||+++..+++..
T Consensus        32 r~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          32 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HHHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             eeeeecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            55554 488899999999999999999999998754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.86  E-value=0.019  Score=44.90  Aligned_cols=20  Identities=40%  Similarity=0.303  Sum_probs=18.2

Q ss_pred             EEEEEccCCCcHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LA  114 (278)
                      .|.|+|.+++||||+...|.
T Consensus         3 ~VaivG~~nvGKSTLin~L~   22 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMT   22 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            38999999999999999985

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.81  E-value=0.031  Score=47.48  Aligned_cols=18  Identities=11%  Similarity=0.095  Sum_probs=14.5

Q ss_pred             cEEEEEccCCCcHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGK  111 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk  111 (278)
                      ..++|.|++||||||++-
T Consensus        25 g~~lV~g~aGSGKTt~l~   42 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVLT   42 (318)
T ss_dssp             SCEEEEECTTSCHHHHHH
T ss_pred             CCEEEEecCCccHHHHHH
Confidence            347788999999998753

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.81  E-value=0.024  Score=46.82  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=19.9

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      ++++|+|.-||||||+-+.|.+.
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            46788999999999999988764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.61  E-value=0.035  Score=43.77  Aligned_cols=21  Identities=29%  Similarity=0.146  Sum_probs=19.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+|||++..++..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            689999999999999999865

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.60  E-value=0.042  Score=45.80  Aligned_cols=36  Identities=22%  Similarity=0.220  Sum_probs=27.4

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCch
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDS  126 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~  126 (278)
                      -..++|+++|--|+||||++-.||..|   |.+  .+|.|-
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp   58 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP   58 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            456678888999999999877777665   544  568773

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.50  E-value=0.031  Score=46.82  Aligned_cols=16  Identities=13%  Similarity=0.071  Sum_probs=13.2

Q ss_pred             EEEEEccCCCcHHHHH
Q 023749           95 SVFLVGMNNAIKTHLG  110 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlA  110 (278)
                      .++|.|+|||||||+.
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            3667799999999874

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=92.44  E-value=0.026  Score=44.50  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=21.3

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ++.-+|.|+|.+++||||+...|.+
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHH
Confidence            3445799999999999999999964

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.43  E-value=0.045  Score=46.73  Aligned_cols=29  Identities=24%  Similarity=0.513  Sum_probs=25.5

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      +-..++|.|++++|||+++..|...+|-.
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~lg~~  131 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHTVPFY  131 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHHhcch
Confidence            45689999999999999999999998754

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.39  E-value=0.039  Score=43.67  Aligned_cols=21  Identities=24%  Similarity=0.072  Sum_probs=19.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+|||++..++..
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999988865

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.35  E-value=0.04  Score=43.32  Aligned_cols=22  Identities=27%  Similarity=0.294  Sum_probs=19.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|.+|+|||++.+.+..
T Consensus         3 ~KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999998865

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.27  E-value=0.043  Score=42.61  Aligned_cols=22  Identities=18%  Similarity=0.123  Sum_probs=19.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      -.|+|+|.+|+||||+...+..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999998865

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.23  E-value=0.023  Score=44.27  Aligned_cols=21  Identities=19%  Similarity=0.202  Sum_probs=9.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+...|..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999987753

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.00  E-value=0.028  Score=43.76  Aligned_cols=21  Identities=29%  Similarity=0.175  Sum_probs=18.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .|+|+|.+|+||||+...+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999887754

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.87  E-value=0.043  Score=44.88  Aligned_cols=22  Identities=18%  Similarity=0.241  Sum_probs=19.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      -.|+|+|.+|+||||+.+.+..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4689999999999999999854

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.59  E-value=0.061  Score=45.76  Aligned_cols=37  Identities=22%  Similarity=0.157  Sum_probs=28.7

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCc
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSD  125 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D  125 (278)
                      +-..|..+.|.|+|||||||+|-.++...   |  ..|+|+.
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE   91 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE   91 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence            55678999999999999999998887644   2  3356654

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=91.32  E-value=0.062  Score=48.28  Aligned_cols=41  Identities=7%  Similarity=-0.095  Sum_probs=29.0

Q ss_pred             HHHHHHHHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      .....+..++.. ...-.|+|+|+.||||||....+-+.+.-
T Consensus       144 ~~~~~~l~~l~~-~~~GliLvtGpTGSGKSTTl~~~l~~~~~  184 (401)
T d1p9ra_         144 AHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQELNS  184 (401)
T ss_dssp             HHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHh-hhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence            333444444443 34457899999999999999998887753

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.00  E-value=0.069  Score=41.53  Aligned_cols=23  Identities=17%  Similarity=0.182  Sum_probs=20.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      ..|+|.|..|+|||++-.++...
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999664

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.82  E-value=0.075  Score=41.89  Aligned_cols=25  Identities=24%  Similarity=0.216  Sum_probs=20.1

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +.+.+.+++++.|+|||.++-.++.
T Consensus        21 ~~~~n~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          21 CKETNCLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             GGGSCEEEECCTTSCHHHHHHHHHH
T ss_pred             HhcCCeEEEeCCCCcHHHHHHHHHH
Confidence            3456788999999999998777765

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=90.81  E-value=0.051  Score=40.51  Aligned_cols=28  Identities=14%  Similarity=-0.125  Sum_probs=21.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      -++.+|.++.|||||+++-.+....|..
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~~~~~~   35 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYAAQGYK   35 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHHTTTCC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence            3567889999999999987666655544

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.70  E-value=0.078  Score=41.63  Aligned_cols=24  Identities=13%  Similarity=-0.002  Sum_probs=20.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .--.|+++|.+|+||||+...+..
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHh
Confidence            345799999999999999998865

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=90.66  E-value=0.018  Score=44.32  Aligned_cols=25  Identities=28%  Similarity=0.091  Sum_probs=21.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      ...+|+|+.||||||+-.+|.-.|+
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc
Confidence            3567889999999999999987664

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=90.57  E-value=0.06  Score=47.73  Aligned_cols=26  Identities=19%  Similarity=0.152  Sum_probs=21.1

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +...++++|+|.+|||||+..+.+..
T Consensus        47 ~~~~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          47 DAEPRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGGGGCEEEEECTTSSHHHHHHHHHH
T ss_pred             CcccceEEEEeCCCCcHHHHHHHHHH
Confidence            34567899999999999998875554

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.46  E-value=0.074  Score=41.17  Aligned_cols=22  Identities=18%  Similarity=0.253  Sum_probs=19.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ..|+|+|..|+|||++-+.+..
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhh
Confidence            3689999999999999998864

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=90.31  E-value=0.029  Score=41.08  Aligned_cols=19  Identities=32%  Similarity=0.032  Sum_probs=16.9

Q ss_pred             CCcEEEEEccCCCcHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLG  110 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlA  110 (278)
                      +|+..+|.+++|||||.++
T Consensus         6 ~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTH
T ss_pred             cCCcEEEEcCCCCChhHHH
Confidence            5889999999999999776

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.19  E-value=0.086  Score=43.15  Aligned_cols=26  Identities=19%  Similarity=0.171  Sum_probs=21.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .++.|.|+|-+.+||||+...|....
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhhc
Confidence            45669999999999999999886543

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=90.15  E-value=0.085  Score=43.79  Aligned_cols=33  Identities=18%  Similarity=0.131  Sum_probs=26.4

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCch
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDS  126 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~  126 (278)
                      +.|.|.|-=|+||||++-.||..|   |.+  .+|.|-
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~   39 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP   39 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            578899999999999998888766   544  578774

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.67  E-value=0.22  Score=41.87  Aligned_cols=43  Identities=12%  Similarity=0.136  Sum_probs=31.2

Q ss_pred             HHHHHHHhhhhcc------CCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           79 AVKKKAADISTEL------KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        79 ~~~~~~~~~~~~~------~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      .+.++.++.+..|      .-+.|+|+|-.+|||||+...|   +|.+++-+
T Consensus         6 ~~~~~l~d~l~~lg~~~~~~~P~ivvvG~~SsGKSsliNaL---lg~~~lP~   54 (299)
T d2akab1           6 PLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENF---VGRDFLPR   54 (299)
T ss_dssp             HHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHH---HTSCCSCC
T ss_pred             HHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCCCHHHHHHHH---hCCCcCCC
Confidence            4566666665444      3446999999999999999999   56665443

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.58  E-value=0.12  Score=41.33  Aligned_cols=34  Identities=29%  Similarity=0.255  Sum_probs=26.7

Q ss_pred             CCcEEEEE-ccCCCcHHHHHHHHHHHh---CCc--eecCc
Q 023749           92 KGTSVFLV-GMNNAIKTHLGKFLADAL---RYY--YFDSD  125 (278)
Q Consensus        92 ~~~~I~L~-G~~GSGKSTlAk~LAe~L---g~~--~iD~D  125 (278)
                      +++.|.+. +--|+||||++..||..|   |.+  ++|.|
T Consensus         1 m~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D   40 (237)
T d1g3qa_           1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD   40 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            46788888 589999999999998766   554  56766

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.47  E-value=0.13  Score=41.25  Aligned_cols=33  Identities=24%  Similarity=0.203  Sum_probs=24.5

Q ss_pred             cEEEEE-ccCCCcHHHHHHHHHHHh---CCc--eecCch
Q 023749           94 TSVFLV-GMNNAIKTHLGKFLADAL---RYY--YFDSDS  126 (278)
Q Consensus        94 ~~I~L~-G~~GSGKSTlAk~LAe~L---g~~--~iD~D~  126 (278)
                      +.|.|+ |-.|+||||++..||..|   |.+  ++|.|.
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~   40 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   40 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            456666 789999999999888766   444  467663

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.41  E-value=0.081  Score=44.40  Aligned_cols=27  Identities=15%  Similarity=0.108  Sum_probs=21.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      .+..-+|+|+.||||||+-.+|+=.||
T Consensus        23 ~~~lnvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          23 SDRVTAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             CSSEEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            345678999999999999998865444

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.33  E-value=0.078  Score=42.26  Aligned_cols=24  Identities=25%  Similarity=0.267  Sum_probs=20.1

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHH
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKF  112 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~  112 (278)
                      .-+.|+.+++.++.|||||+++-.
T Consensus        36 ~l~~~~~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          36 KVFSGKNLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             HHTTCSCEEEECSSHHHHHHHHHH
T ss_pred             HHHcCCCEEEEcCCCCchhHHHHH
Confidence            345789999999999999998753

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.83  E-value=0.15  Score=45.53  Aligned_cols=23  Identities=17%  Similarity=0.081  Sum_probs=20.8

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LA  114 (278)
                      .+-+|+|+|.+|+||||+...|-
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            46789999999999999999883

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=88.73  E-value=0.27  Score=41.56  Aligned_cols=32  Identities=13%  Similarity=0.178  Sum_probs=25.5

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecC
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS  124 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~  124 (278)
                      .+.-+.|+|+|..++||||+...|   +|.+++-+
T Consensus        21 ~~~lP~ivVvG~~ssGKSSliNaL---lG~~~lP~   52 (306)
T d1jwyb_          21 PLDLPQIVVVGSQSSGKSSVLENI---VGRDFLPR   52 (306)
T ss_dssp             TTCCCEEEEEECSSSSHHHHHHHH---HTSCCCCC
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHH---hCCCCCCC
Confidence            345568999999999999999999   57666543

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=88.66  E-value=0.2  Score=35.86  Aligned_cols=34  Identities=18%  Similarity=0.283  Sum_probs=28.9

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHHhCCceecCch
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS  126 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~  126 (278)
                      ..+.|+|+|.-|+|-|.+|+.|.+ .|+.+-=+|.
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~-~G~~VsGSD~   40 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLN-EGYQISGSDI   40 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHH-HTCEEEEEES
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHh-CCCEEEEEeC
Confidence            578999999999999999999966 6998765553

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.64  E-value=0.14  Score=43.76  Aligned_cols=26  Identities=12%  Similarity=-0.106  Sum_probs=22.7

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      ++|.|+|..|+||||++..|....|.
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~   32 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGR   32 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCc
Confidence            47999999999999999999776664

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.21  E-value=0.13  Score=41.55  Aligned_cols=25  Identities=24%  Similarity=0.090  Sum_probs=21.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALR  118 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg  118 (278)
                      -+|+++|-+++||||+...|-...|
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g   28 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAA   28 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhh
Confidence            3699999999999999999965544

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.06  E-value=0.2  Score=41.99  Aligned_cols=33  Identities=18%  Similarity=0.105  Sum_probs=24.5

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHh---CCc--eecCch
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDS  126 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~L---g~~--~iD~D~  126 (278)
                      +.|++.|-=|+||||++--||..|   |..  .+|+|-
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~Dp   40 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP   40 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCC
Confidence            467889999999999777666544   665  467773

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=87.99  E-value=0.17  Score=43.06  Aligned_cols=26  Identities=31%  Similarity=0.183  Sum_probs=22.1

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      ++|.|+|..|+||||+...|--..|.
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~   28 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGA   28 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCC
Confidence            57999999999999999999655553

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.96  E-value=0.23  Score=42.47  Aligned_cols=33  Identities=24%  Similarity=0.105  Sum_probs=28.4

Q ss_pred             HhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .-+.+--+|.++.|.|.+|+|||+++..++...
T Consensus        60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eeeccccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            345588899999999999999999999998753

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.91  E-value=0.1  Score=41.99  Aligned_cols=23  Identities=13%  Similarity=0.144  Sum_probs=19.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHh
Q 023749           95 SVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .|+|+|...||||..|..|+...
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~   23 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDA   23 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSC
T ss_pred             CEEEECCCCccHHHHHHHHHhcC
Confidence            47899999999999999997543

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=87.68  E-value=0.18  Score=42.40  Aligned_cols=24  Identities=29%  Similarity=0.263  Sum_probs=21.7

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +++.|.|+|.|.+||||+=.+|..
T Consensus         1 m~~~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           1 MGFKCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHC
Confidence            467899999999999999999985

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.45  E-value=0.21  Score=42.43  Aligned_cols=43  Identities=16%  Similarity=0.178  Sum_probs=31.3

Q ss_pred             HHhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCch
Q 023749           84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS  126 (278)
Q Consensus        84 ~~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D~  126 (278)
                      +..+-+-..|..+.|.|++|+||||+|-.++...   |  ..|+|+..
T Consensus        51 ~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          51 ALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             HTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hhccCCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            3334477789999999999999999997666533   3  33667644

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.14  E-value=0.33  Score=38.80  Aligned_cols=30  Identities=20%  Similarity=0.051  Sum_probs=25.2

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      +.+...+|..++|+|||.++-.++.+++.+
T Consensus        83 ~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~  112 (206)
T d2fz4a1          83 LVDKRGCIVLPTGSGKTHVAMAAINELSTP  112 (206)
T ss_dssp             TTTSEEEEEESSSTTHHHHHHHHHHHSCSC
T ss_pred             HhCCCcEEEeCCCCCceehHHhHHHHhcCc
Confidence            456677888999999999999998888755

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=86.88  E-value=0.39  Score=39.85  Aligned_cols=43  Identities=9%  Similarity=-0.025  Sum_probs=32.2

Q ss_pred             CCccHHHHHHHHhhhhcc---CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           74 EDPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~---~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .....+.++-..++..++   .++.-+|+|..|||||-++-..+..
T Consensus        54 ~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~   99 (233)
T d2eyqa3          54 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL   99 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHH
Confidence            444566666666666444   6778999999999999999887754

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=86.87  E-value=0.2  Score=41.37  Aligned_cols=24  Identities=25%  Similarity=0.101  Sum_probs=20.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .+..++|+|+..+||||+.|.++-
T Consensus        34 ~~~~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          34 AHELVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             SSCEEEEESCSSSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCccccchhhhhhHH
Confidence            345789999999999999997765

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=86.66  E-value=0.31  Score=40.86  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .+..|.++|+|.+||||+...|..
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~  134 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAK  134 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CceEEEEEecCccchhhhhhhhhc
Confidence            466799999999999999999964

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.33  E-value=0.23  Score=41.23  Aligned_cols=23  Identities=17%  Similarity=0.044  Sum_probs=20.5

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .+.++|+|+..+||||+.|.++-
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHH
Confidence            46789999999999999998875

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=86.26  E-value=0.25  Score=41.91  Aligned_cols=37  Identities=16%  Similarity=0.169  Sum_probs=28.9

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh---C--CceecCc
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSD  125 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L---g--~~~iD~D  125 (278)
                      +-..|..+-+.|++||||||+|-.++...   |  ..|+|+.
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE   94 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE   94 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence            55578899999999999999998877543   3  3467764

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=85.55  E-value=0.27  Score=41.76  Aligned_cols=24  Identities=21%  Similarity=0.223  Sum_probs=21.4

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .++.|.|+|.|.|||||+=.+|..
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHC
Confidence            457899999999999999999974

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.20  E-value=0.15  Score=41.61  Aligned_cols=27  Identities=19%  Similarity=0.071  Sum_probs=22.7

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHH
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      .-|.|+.+++++|.|+|||+++-..+.
T Consensus        54 ~~l~g~~~~i~apTGsGKT~~~~~~~~   80 (237)
T d1gkub1          54 RILRKESFAATAPTGVGKTSFGLAMSL   80 (237)
T ss_dssp             HHHTTCCEECCCCBTSCSHHHHHHHHH
T ss_pred             HHHCCCCEEEEecCCChHHHHHHHHHH
Confidence            446899999999999999998776654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=84.87  E-value=0.34  Score=39.71  Aligned_cols=26  Identities=15%  Similarity=0.033  Sum_probs=22.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      +|+++|-..+||||+...|...+|..
T Consensus        11 ~i~viGHVd~GKSTL~~~Ll~~~g~i   36 (222)
T d1zunb3          11 RFLTCGNVDDGKSTLIGRLLHDSKMI   36 (222)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHcCCc
Confidence            48999999999999999998777753

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=84.55  E-value=0.29  Score=46.84  Aligned_cols=30  Identities=23%  Similarity=0.224  Sum_probs=25.4

Q ss_pred             hhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           88 STELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        88 ~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ...-...+|++.|-+|||||+-+|.+-+.|
T Consensus        81 ~~~~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          81 RQSQENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             HHHCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHcCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            344578899999999999999999987755

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=84.44  E-value=0.13  Score=42.88  Aligned_cols=35  Identities=17%  Similarity=0.279  Sum_probs=25.9

Q ss_pred             hhhhccCCc---EEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           86 DISTELKGT---SVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        86 ~~~~~~~~~---~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      +...++.++   +|+++|-.++||||+...|--.+|..
T Consensus        14 ~~~~~~~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i   51 (245)
T d1r5ba3          14 ELLKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMV   51 (245)
T ss_dssp             TTHHHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSS
T ss_pred             HHHHHhcCCCceEEEEEeeCCCCHHHHHHHHHHHcCCc
Confidence            344444443   68999999999999999997666653

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.38  E-value=0.48  Score=40.06  Aligned_cols=41  Identities=20%  Similarity=0.171  Sum_probs=33.5

Q ss_pred             CccHHHHHHHHhhhhcc---CCcEEEEEccCCCcHHHHHHHHHH
Q 023749           75 DPSFAVKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        75 ~~~~~~~~~~~~~~~~~---~~~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      ....+.++-+.||..++   .++.-+|.|..|||||-|+-..+.
T Consensus        83 eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~  126 (264)
T d1gm5a3          83 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAIL  126 (264)
T ss_dssp             CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHH
T ss_pred             cCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHH
Confidence            44578888888888666   567889999999999999987764

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.26  E-value=0.38  Score=41.48  Aligned_cols=27  Identities=15%  Similarity=0.138  Sum_probs=21.6

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      +..-+|+|+.|||||++-.+++=.||.
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~~~lg~   51 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAISFVLGV   51 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            345678999999999999999755553

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=83.97  E-value=0.26  Score=42.90  Aligned_cols=20  Identities=30%  Similarity=0.464  Sum_probs=16.3

Q ss_pred             CCcEEEEEccCCCcHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGK  111 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk  111 (278)
                      .|..-++.|++|+||||+..
T Consensus        13 ~~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          13 KGDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             TSCEEEEECSTTSSHHHHHC
T ss_pred             CCCEEEEEccCCCCccccee
Confidence            35566899999999999773

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=83.91  E-value=0.3  Score=38.48  Aligned_cols=20  Identities=35%  Similarity=0.315  Sum_probs=18.5

Q ss_pred             EEEEEccCCCcHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LA  114 (278)
                      +|.++|-..+||||+...|.
T Consensus         7 nIaiiGhvd~GKSTL~~~L~   26 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALT   26 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeccCCcHHHHHHHHH
Confidence            68999999999999999995

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=83.74  E-value=0.37  Score=33.97  Aligned_cols=32  Identities=9%  Similarity=0.063  Sum_probs=27.2

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCceecCch
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS  126 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~  126 (278)
                      ++|.|+|.-|+|-|.+|+.|.+ .|+.+-=+|.
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~-~G~~VsGSD~   33 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFS-NGNDVYGSNI   33 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEECS
T ss_pred             cEEEEEeECHHHHHHHHHHHHh-CCCeEEEEeC
Confidence            6899999999999999998855 7998766653

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=83.69  E-value=0.33  Score=46.61  Aligned_cols=43  Identities=23%  Similarity=0.290  Sum_probs=30.6

Q ss_pred             Ccc-HHHHHHH-HhhhhccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           75 DPS-FAVKKKA-ADISTELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        75 ~~~-~~~~~~~-~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      .+| .++=++| ......=...+|++.|-+|||||+-+|.+-+.|
T Consensus        71 ~PHif~vA~~Ay~~m~~~~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          71 PPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             CCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            345 3444433 223344478999999999999999999997765

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=83.38  E-value=0.32  Score=39.01  Aligned_cols=23  Identities=22%  Similarity=0.141  Sum_probs=20.0

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      -+|+++|-..+||||++..|-..
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHH
Confidence            36999999999999999988653

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=83.37  E-value=0.35  Score=46.53  Aligned_cols=29  Identities=24%  Similarity=0.239  Sum_probs=24.9

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ..-...+|++.|-+|||||+-+|.+-+.|
T Consensus       121 ~~~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         121 DDRQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             HHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HhCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            34468899999999999999999997655

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.26  E-value=0.29  Score=42.73  Aligned_cols=19  Identities=26%  Similarity=0.422  Sum_probs=16.1

Q ss_pred             CcEEEEEccCCCcHHHHHH
Q 023749           93 GTSVFLVGMNNAIKTHLGK  111 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk  111 (278)
                      |..-++.|++|+||||+..
T Consensus        14 gd~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          14 GDVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             CCEEEEECCTTSSHHHHHC
T ss_pred             CCEEEEEccCCCCccccee
Confidence            5566799999999999983

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=82.83  E-value=0.34  Score=41.20  Aligned_cols=22  Identities=18%  Similarity=0.014  Sum_probs=19.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHH
Q 023749           94 TSVFLVGMNNAIKTHLGKFLAD  115 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe  115 (278)
                      +.|.|+|.|.+||||+=..|..
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC
T ss_pred             CcEeEECCCCCCHHHHHHHHHC
Confidence            4689999999999999999953

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.82  E-value=0.47  Score=40.61  Aligned_cols=32  Identities=13%  Similarity=0.073  Sum_probs=27.3

Q ss_pred             HhhhhccCCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        85 ~~~~~~~~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      .-+.+-.+|.++.|.|.+|+|||+++..++..
T Consensus        60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             HHHSCCBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             ecccCccCCCEEEeecCCCCChHHHHHHHHHh
Confidence            34558889999999999999999998877653

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=82.71  E-value=0.38  Score=46.84  Aligned_cols=29  Identities=24%  Similarity=0.229  Sum_probs=24.7

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ..-....|++.|-+|||||+-+|.+-+.|
T Consensus       119 ~~~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         119 TDRENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             HHTCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             HcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34468899999999999999999887755

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.61  E-value=0.47  Score=39.25  Aligned_cols=27  Identities=15%  Similarity=0.054  Sum_probs=23.6

Q ss_pred             cEEEEEccCCCcHHHHHHHHHHHhCCc
Q 023749           94 TSVFLVGMNNAIKTHLGKFLADALRYY  120 (278)
Q Consensus        94 ~~I~L~G~~GSGKSTlAk~LAe~Lg~~  120 (278)
                      .+|+++|-.++||||+...|.-.+|..
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g~i   33 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCGGI   33 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSCS
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence            489999999999999999998777764

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=82.43  E-value=0.28  Score=42.84  Aligned_cols=32  Identities=19%  Similarity=0.198  Sum_probs=21.8

Q ss_pred             CcEEEEEccCCCcHHHHHHHHHHHhCCceecCchHH
Q 023749           93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV  128 (278)
Q Consensus        93 ~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D~li  128 (278)
                      |.+-++.|++|+||||+..    .-+...+.-|...
T Consensus        14 ~~valffGLSGTGKTTLs~----~~~r~ligDDe~~   45 (318)
T d1j3ba1          14 GDVAVFFGLSGTGKTTLST----DPERPLIGDDEHG   45 (318)
T ss_dssp             CCEEEEEECTTSCHHHHTC----BTTBCEEESSEEE
T ss_pred             CCEEEEEccCCCCcccccc----CCCceEEcCccee
Confidence            5567899999999999664    2344455545443

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=82.41  E-value=0.45  Score=38.56  Aligned_cols=25  Identities=16%  Similarity=0.146  Sum_probs=21.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHHHhCC
Q 023749           95 SVFLVGMNNAIKTHLGKFLADALRY  119 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LAe~Lg~  119 (278)
                      +|.++|-.++||||+...|--..|.
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll~~~g~   29 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLLMDRGF   29 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHBC
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCC
Confidence            6999999999999999988766665

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=82.19  E-value=0.41  Score=46.04  Aligned_cols=29  Identities=21%  Similarity=0.251  Sum_probs=25.1

Q ss_pred             hccCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           89 TELKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        89 ~~~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      ..-.+.+|++.|-+|||||+.+|.+-+.|
T Consensus        90 ~~~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          90 RDERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             HHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HhCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            44578999999999999999999987755

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=81.68  E-value=0.3  Score=34.14  Aligned_cols=34  Identities=15%  Similarity=0.147  Sum_probs=27.0

Q ss_pred             ccCCcEEEEEccCCCcHHHHHHHHHHHhCCceecCc
Q 023749           90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD  125 (278)
Q Consensus        90 ~~~~~~I~L~G~~GSGKSTlAk~LAe~Lg~~~iD~D  125 (278)
                      ++++++|+++|.=.||.|+ |+.|++ .|+.++=.|
T Consensus         2 ~~~~K~v~ViGlG~sG~s~-a~~L~~-~g~~v~~~D   35 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSC-VDFFLA-RGVTPRVMD   35 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHH-HHHHHH-TTCCCEEEE
T ss_pred             CcCCCEEEEEeECHHHHHH-HHHHHH-CCCEEEEee
Confidence            5889999999999999986 787866 587765444

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=80.90  E-value=0.41  Score=46.57  Aligned_cols=27  Identities=26%  Similarity=0.149  Sum_probs=23.9

Q ss_pred             cCCcEEEEEccCCCcHHHHHHHHHHHh
Q 023749           91 LKGTSVFLVGMNNAIKTHLGKFLADAL  117 (278)
Q Consensus        91 ~~~~~I~L~G~~GSGKSTlAk~LAe~L  117 (278)
                      -...+|++.|-+|||||.-+|.+-+.|
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            367899999999999999999987765

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=80.51  E-value=0.47  Score=37.66  Aligned_cols=20  Identities=25%  Similarity=0.213  Sum_probs=18.6

Q ss_pred             EEEEEccCCCcHHHHHHHHH
Q 023749           95 SVFLVGMNNAIKTHLGKFLA  114 (278)
Q Consensus        95 ~I~L~G~~GSGKSTlAk~LA  114 (278)
                      +|.++|-..+||||+...|.
T Consensus        10 ni~iiGhVd~GKSTL~~~L~   29 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAIT   29 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEEccCCcHHHHHHHHH
Confidence            69999999999999999985

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.27  E-value=0.7  Score=34.73  Aligned_cols=25  Identities=12%  Similarity=-0.053  Sum_probs=19.3

Q ss_pred             CCcEEEEEccCCCcHHHHHHHHHHH
Q 023749           92 KGTSVFLVGMNNAIKTHLGKFLADA  116 (278)
Q Consensus        92 ~~~~I~L~G~~GSGKSTlAk~LAe~  116 (278)
                      +|..-+++||+.|||||-.-..+..
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~   25 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRR   25 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHH
Confidence            4677889999999999965554443