Citrus Sinensis ID: 023777

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MNFPLFYLFIYSKVCPRATFLLFCPSVLYSKESHWLVISFVLLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEcccccEEEEEEcccEEcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEcc
Coil and Loop (DISEMBL)
MNFPLFYLFIYskvcpratfllfcpsvlyskesHWLVISFVLLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGyiyqcppfrlsyqglgeplcfaafgpfATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVvegdrnvgkmsplvrlgtergsVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTkhipklvfq
Flexible Loop (DISEMBL)
MNFPLFYLFIYSKVCPRATFLLFCPSVLYSKESHWLVISFVLLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVegdrnvgkmSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Low Complexity Region (SEG)
MNFPLFYLFIYSKVCPRATFLLFCPSVLYSKESHWLVISFVLLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCfaafgpfattafYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Disordered region (IsUnstruct)
**FPLFYLFIYSKVCPRATFLLFCPSVLYSKESHWLVISFVLLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLV**
Disordered Region (DISOPRED)
MNFPLFYLFIYSKVCPRATFLLFCPSVLYSKESHWL******LGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Disordered Region (DISEMBL)
MNFPLFYLFIYSKVCPRATFLLFCPSVLYSKESHWLVISFVLLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Disordered Region (DISPRO)
*NFPLFYLFIYSKVCPRATFLLFCPSVLYSKESHWLVISFVLLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNFPLFYLFIYSKVCPRATFLLFCPSVLYSKESHWLVISFVLLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	277	2.2.26 [Sep-21-2011]
Q0WUA3	382	1,4-dihydroxy-2-naphthoat	no	no	0.740	0.536	0.679	4e-78
P73962	307	Probable 1,4-dihydroxy-2-	N/A	no	0.750	0.677	0.369	9e-28

>sp|Q0WUA3|MENA_ARATH 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic OS=Arabidopsis thaliana GN=ABC4 PE=1 SV=2

 Score =  291 bits (744), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 140/206 (67%), Positives = 166/206 (80%), Gaps = 1/206 (0%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L+GSRTGTL  A   L LG  GL W S+ A N+RAI+LL  A++CGY+YQCPPFRLSYQG
Sbjct: 161 LVGSRTGTLAAAITSLALGVSGLVWTSLNASNIRAILLLASAILCGYVYQCPPFRLSYQG 220

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGEPLCFAAFGPFATTAFYLLLGS+ E   L ++  VLS+S+LVG TTSLILFCSHFHQ 
Sbjct: 221 LGEPLCFAAFGPFATTAFYLLLGSSSEMRHLPLSGRVLSSSVLVGFTTSLILFCSHFHQ- 279

Query: 162 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIG 221
           V+GD  VGK SPLVRLGTE+G+ VV+W + +LYS+L  +GL+R LPL C  +C +T P+G
Sbjct: 280 VDGDLAVGKYSPLVRLGTEKGAFVVRWTIRLLYSMLLVLGLTRILPLPCTLMCFLTLPVG 339

Query: 222 KLVVSYVEENHKDKGKIFMAKYYCVR 247
            LV SYVE++HKD GKIFMAKYYCVR
Sbjct: 340 NLVSSYVEKHHKDNGKIFMAKYYCVR 365

Involved in the synthesis of phylloquinone (vitamin K1). Catalyzes the transfer of a prenyl chain to 1,4-dihydroxy-2-naphthoate (DHNA).
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 7EC: 4

>sp|P73962|MENA_SYNY3 Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=menA PE=3 SV=1

 Score =  124 bits (310), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 117/219 (53%), Gaps = 11/219 (5%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L G+R    + +   L+ G +GL   S  A +   + L+  A+  GY YQ PPFRL Y G
Sbjct: 92  LTGNRNLVFLISNFFLLAGVLGLMSMSWRAQDWTVLELIGVAIFLGYTYQGPPFRLGYLG 151

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGE +C   FGP A  A Y        +   S +  +L+ S+ VG++T++ILFCSHFHQ 
Sbjct: 152 LGELICLITFGPLAIAAAYY-------SQSQSFSWNLLTPSVFVGISTAIILFCSHFHQ- 203

Query: 162 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIG-LSRALPLSCIFLCAMTSPI 220
           VE D   GK SP+VRLGT+ GS V+  +V+ LY L+ AIG L    P   + + A + P 
Sbjct: 204 VEDDLAAGKKSPIVRLGTKLGSQVLTLSVVSLY-LITAIGVLCHQAPWQTLLIIA-SLPW 261

Query: 221 GKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAG 259
              ++ +V + H    ++   K+  V  H   G  + AG
Sbjct: 262 AVQLIRHVGQYHDQPEQVSNCKFIAVNLHFFSGMLMAAG 300

Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to dimethylmenaquinone (DMK). Attaches octaprenylpyrophosphate, a membrane-bound 40-carbon side chain to DHNA. The conversion of DHNA to DMK proceeds in three stages: the removal of the carboxyl group of DHNA as CO(2), the attachment of the isoprenoid side chain, and a quinol-to-quinone oxidation, which is thought to be spontaneous.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
449438213	404	PREDICTED: 1,4-dihydroxy-2-naphthoate po	0.841	0.576	0.713	3e-92
357476309	359	hypothetical protein MTR_4g094100 [Medic	0.819	0.632	0.707	2e-89
224141217	401	predicted protein [Populus trichocarpa]	0.805	0.556	0.723	4e-88
297837449	287	hypothetical protein ARALYDRAFT_475272 [	0.801	0.773	0.704	9e-85
356528024	398	PREDICTED: 1,4-dihydroxy-2-naphthoate po	0.801	0.557	0.695	1e-83
356551124	397	PREDICTED: 1,4-dihydroxy-2-naphthoate po	0.801	0.559	0.677	1e-81
296087485	386	unnamed protein product [Vitis vinifera]	0.740	0.531	0.742	8e-81
225462860	364	PREDICTED: 1,4-dihydroxy-2-naphthoate po	0.740	0.563	0.742	1e-80
45773758	287	At1g60600 [Arabidopsis thaliana]	0.740	0.714	0.679	2e-76
30696438	287	1,4-dihydroxy-2-naphthoate octaprenyltra	0.740	0.714	0.679	2e-76

>gi|449438213|ref|XP_004136884.1| PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like [Cucumis sativus] gi|449478849|ref|XP_004155434.1| PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like [Cucumis sativus]

 Score =  344 bits (882), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 167/234 (71%), Positives = 196/234 (83%), Gaps = 1/234 (0%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L+GS TGTLV AY  L LGF+GLTWAS+EAGNLR+I+ L  +++CGYIYQCPPFRLSYQG
Sbjct: 170 LVGSPTGTLVAAYTFLALGFMGLTWASLEAGNLRSILFLAFSIVCGYIYQCPPFRLSYQG 229

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGEPLCFAAFGPFATTAFYLL  + RE   L I+ T+LSAS+LVG TT+LILFCSHFHQ 
Sbjct: 230 LGEPLCFAAFGPFATTAFYLLQSNAREMRYLPISNTILSASILVGTTTTLILFCSHFHQ- 288

Query: 162 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIG 221
           VEGDR VGKMSPLVRLGTERGS VVK AV++LY LLFA+GLS+ LP +CI  C +T P+G
Sbjct: 289 VEGDRAVGKMSPLVRLGTERGSKVVKVAVIMLYVLLFALGLSKNLPFTCILFCGLTIPVG 348

Query: 222 KLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPKLV 275
           KLVVS+VEENHKDK KIFMAKY+CVR HA+FG AL AGL+ AR++ T +  + +
Sbjct: 349 KLVVSFVEENHKDKQKIFMAKYFCVRLHAIFGLALAAGLVVARLISTINTSRTI 402

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476309|ref|XP_003608440.1| hypothetical protein MTR_4g094100 [Medicago truncatula] gi|355509495|gb|AES90637.1| hypothetical protein MTR_4g094100 [Medicago truncatula]

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 162/229 (70%), Positives = 192/229 (83%), Gaps = 2/229 (0%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L+GSRTG  + AYL L LGF+GLTWA+VEAGN+R+++ LTCA+ CGYIYQCPPFRLSYQG
Sbjct: 128 LVGSRTGIFIVAYLCLALGFVGLTWAAVEAGNIRSVLFLTCAIFCGYIYQCPPFRLSYQG 187

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRE-NLCLSITATVLSASLLVGLTTSLILFCSHFHQ 160
           LGEPLCFAAFGPFAT AFYL+ GS         ++ TVLSAS+LVG TTSLILFCSHFHQ
Sbjct: 188 LGEPLCFAAFGPFATAAFYLVQGSASSVTNHFPLSGTVLSASVLVGFTTSLILFCSHFHQ 247

Query: 161 VVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPI 220
           V +GD  VGK+SPLVRLGTERG+ VVK AV+ LY+LL A GLS+ALPL+CIFLCA+T PI
Sbjct: 248 V-DGDEEVGKLSPLVRLGTERGAEVVKAAVLSLYALLVAFGLSKALPLTCIFLCALTLPI 306

Query: 221 GKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTK 269
           G LV+ +V++NHKDK KIFMAKY+CVR HALFGAAL  GL+ AR++ +K
Sbjct: 307 GNLVIKFVQDNHKDKDKIFMAKYFCVRLHALFGAALAFGLVLARMVNSK 355

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141217|ref|XP_002323971.1| predicted protein [Populus trichocarpa] gi|118485902|gb|ABK94797.1| unknown [Populus trichocarpa] gi|222866973|gb|EEF04104.1| predicted protein [Populus trichocarpa]

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 162/224 (72%), Positives = 188/224 (83%), Gaps = 1/224 (0%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L+GSR+   + AY  L+LGF GL W S+  GN+ AI+ L CA++CGY+YQCPPFRLSYQG
Sbjct: 173 LVGSRSVAFIAAYSSLLLGFAGLAWTSMGEGNIHAILFLACAILCGYVYQCPPFRLSYQG 232

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGEPLCFAAFGPFAT+AFYLLLGST E   L +T T+LSASLLVG TT+LILFCSHFHQV
Sbjct: 233 LGEPLCFAAFGPFATSAFYLLLGSTSEMSILPLTGTILSASLLVGFTTTLILFCSHFHQV 292

Query: 162 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIG 221
            E D+ VGK SPLVRLGTERGS VVK AV +LYSLLFA GLSR LPL+CI LC++T P+G
Sbjct: 293 EE-DKAVGKFSPLVRLGTERGSGVVKVAVAMLYSLLFASGLSRTLPLACILLCSLTLPMG 351

Query: 222 KLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI 265
           KLVV +VEEN+KDKGKIFMAKY+CVR HALFGAAL +GL+ AR+
Sbjct: 352 KLVVGFVEENYKDKGKIFMAKYFCVRLHALFGAALASGLVAARV 395

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297837449|ref|XP_002886606.1| hypothetical protein ARALYDRAFT_475272 [Arabidopsis lyrata subsp. lyrata] gi|297332447|gb|EFH62865.1| hypothetical protein ARALYDRAFT_475272 [Arabidopsis lyrata subsp. lyrata]

 Score =  319 bits (817), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 157/223 (70%), Positives = 181/223 (81%), Gaps = 1/223 (0%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L+GSRTGTL  A   LVLG  GL W S+ A N+RAI+LL  A++CGY+YQCPPFRLSYQG
Sbjct: 66  LVGSRTGTLAAAITSLVLGVSGLVWTSLNASNIRAILLLASAILCGYVYQCPPFRLSYQG 125

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGEPLCFAAFGPFATTAFYLLLGS+ E   L ++  VLS+SLLVG TTSLILFCSHFHQ 
Sbjct: 126 LGEPLCFAAFGPFATTAFYLLLGSSSEMRHLPLSGRVLSSSLLVGFTTSLILFCSHFHQ- 184

Query: 162 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIG 221
           V+GD  VGK SPLVRLGTE+G+ VV+WA+ +LYS+L  +GLSR LPL C  +C +T PIG
Sbjct: 185 VDGDLAVGKYSPLVRLGTEKGAFVVRWAIRLLYSMLLVLGLSRILPLPCTLMCFLTLPIG 244

Query: 222 KLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR 264
            LV SYVE++HKD GKIFMAKYYCVR HALFGAAL  GL+ AR
Sbjct: 245 NLVSSYVEKHHKDNGKIFMAKYYCVRLHALFGAALSLGLVIAR 287

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528024|ref|XP_003532605.1| PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like [Glycine max]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 155/223 (69%), Positives = 183/223 (82%), Gaps = 1/223 (0%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L GSR GT + AYL L +GF+GLTW +V   N+R+I+ L CA+ICGYIYQCPPFRLSYQG
Sbjct: 166 LAGSRKGTFIAAYLCLAIGFLGLTWTAVVERNIRSILFLVCAIICGYIYQCPPFRLSYQG 225

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGEPLCFAAFGPFAT AFYLL GS+       ++ TVLSAS+LVG TTSLILFCSHFHQ 
Sbjct: 226 LGEPLCFAAFGPFATCAFYLLHGSSSVMNHFPLSGTVLSASILVGFTTSLILFCSHFHQ- 284

Query: 162 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIG 221
           VEGD+ VGKMSPLVRLGT++G+ VVK AV +LY+LL A GL +ALPL+CIFLCA+T P+G
Sbjct: 285 VEGDKEVGKMSPLVRLGTKKGAEVVKGAVFMLYALLVAFGLIKALPLTCIFLCALTLPMG 344

Query: 222 KLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR 264
            LVV +VE+N+K+K KIFMAKY+CVR HALFG AL  GL+ AR
Sbjct: 345 NLVVRFVEDNYKNKNKIFMAKYFCVRLHALFGVALALGLVLAR 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551124|ref|XP_003543928.1| PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like [Glycine max]

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 151/223 (67%), Positives = 178/223 (79%), Gaps = 1/223 (0%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           ++GSR G  + AY  L LGF+GLTW +V   NLR+I+ L CA+ICGYIYQCPPFRLSYQG
Sbjct: 165 MVGSRKGIFIAAYSCLALGFLGLTWTAVVERNLRSILFLVCAIICGYIYQCPPFRLSYQG 224

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGEPLCFAAFGPFAT AFYLL  S R      ++ TVLSAS+LVG TTSLILFCSHFHQ 
Sbjct: 225 LGEPLCFAAFGPFATCAFYLLHASARVKNHFPLSGTVLSASILVGFTTSLILFCSHFHQ- 283

Query: 162 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIG 221
           VEGD+ VGKMSPLVRLG ++G+ VVK AV +LY+LL A GL +ALPL+CI LC +T P+G
Sbjct: 284 VEGDKEVGKMSPLVRLGNKKGAEVVKGAVFMLYALLVAFGLIKALPLTCISLCTLTLPLG 343

Query: 222 KLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR 264
            LVV +VE+N+KDK KIFMAKY+CVR HA+FG AL  GL+ AR
Sbjct: 344 NLVVRFVEDNYKDKNKIFMAKYFCVRLHAMFGVALALGLVLAR 386

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087485|emb|CBI34074.3| unnamed protein product [Vitis vinifera]

 Score =  306 bits (783), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 153/206 (74%), Positives = 174/206 (84%), Gaps = 1/206 (0%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           ++GSRTGT   AY LL LGF+GL+WAS+ AGN RAI+LL CAV CGYIYQCPPFRLSYQG
Sbjct: 160 MVGSRTGTHAAAYALLALGFVGLSWASMVAGNFRAILLLACAVTCGYIYQCPPFRLSYQG 219

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGEPLCFAAFGPFATTAFYL+  +T E +   +TATVLSASLLVG TT+LILFCSHFHQ 
Sbjct: 220 LGEPLCFAAFGPFATTAFYLMQTATSEMISPLVTATVLSASLLVGFTTTLILFCSHFHQ- 278

Query: 162 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIG 221
           VEGDR VGKMSPLVRL TE+GS +VK A+ +LYSLL A GL++ LP +CIF CA+T P+ 
Sbjct: 279 VEGDRAVGKMSPLVRLDTEKGSRIVKMAMAMLYSLLLAFGLAKTLPFTCIFSCALTIPMA 338

Query: 222 KLVVSYVEENHKDKGKIFMAKYYCVR 247
           KLVVSYVE+NHKD  KIFMAKYYCVR
Sbjct: 339 KLVVSYVEDNHKDNSKIFMAKYYCVR 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462860|ref|XP_002270171.1| PREDICTED: 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic-like [Vitis vinifera]

 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 153/206 (74%), Positives = 174/206 (84%), Gaps = 1/206 (0%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           ++GSRTGT   AY LL LGF+GL+WAS+ AGN RAI+LL CAV CGYIYQCPPFRLSYQG
Sbjct: 138 MVGSRTGTHAAAYALLALGFVGLSWASMVAGNFRAILLLACAVTCGYIYQCPPFRLSYQG 197

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGEPLCFAAFGPFATTAFYL+  +T E +   +TATVLSASLLVG TT+LILFCSHFHQ 
Sbjct: 198 LGEPLCFAAFGPFATTAFYLMQTATSEMISPLVTATVLSASLLVGFTTTLILFCSHFHQ- 256

Query: 162 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIG 221
           VEGDR VGKMSPLVRL TE+GS +VK A+ +LYSLL A GL++ LP +CIF CA+T P+ 
Sbjct: 257 VEGDRAVGKMSPLVRLDTEKGSRIVKMAMAMLYSLLLAFGLAKTLPFTCIFSCALTIPMA 316

Query: 222 KLVVSYVEENHKDKGKIFMAKYYCVR 247
           KLVVSYVE+NHKD  KIFMAKYYCVR
Sbjct: 317 KLVVSYVEDNHKDNSKIFMAKYYCVR 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|45773758|gb|AAS76683.1| At1g60600 [Arabidopsis thaliana]

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 140/206 (67%), Positives = 166/206 (80%), Gaps = 1/206 (0%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L+GSRTGTL  A   L LG  GL W S+ A N+RAI+LL  A++CGY+YQCPPFRLSYQG
Sbjct: 66  LVGSRTGTLAAAITSLALGVSGLVWTSLNASNIRAILLLASAILCGYVYQCPPFRLSYQG 125

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGEPLCFAAFGPFATTAFYLLLGS+ E   L ++  VLS+S+LVG TTSLILFCSHFHQ 
Sbjct: 126 LGEPLCFAAFGPFATTAFYLLLGSSSEMRHLPLSGRVLSSSVLVGFTTSLILFCSHFHQ- 184

Query: 162 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIG 221
           V+GD  VGK SPLVRLGTE+G+ VV+W + +LYS+L  +GL+R LPL C  +C +T P+G
Sbjct: 185 VDGDLAVGKYSPLVRLGTEKGAFVVRWTIRLLYSMLLVLGLTRILPLPCTLMCFLTLPVG 244

Query: 222 KLVVSYVEENHKDKGKIFMAKYYCVR 247
            LV SYVE++HKD GKIFMAKYYCVR
Sbjct: 245 NLVSSYVEKHHKDNGKIFMAKYYCVR 270

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30696438|ref|NP_176259.2| 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Arabidopsis thaliana] gi|110742781|dbj|BAE99295.1| hypothetical protein [Arabidopsis thaliana] gi|332195580|gb|AEE33701.1| 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Arabidopsis thaliana]

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 140/206 (67%), Positives = 166/206 (80%), Gaps = 1/206 (0%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L+GSRTGTL  A   L LG  GL W S+ A N+RAI+LL  A++CGY+YQCPPFRLSYQG
Sbjct: 66  LVGSRTGTLAAAITSLALGVSGLVWTSLNASNIRAILLLASAILCGYVYQCPPFRLSYQG 125

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGEPLCFAAFGPFATTAFYLLLGS+ E   L ++  VLS+S+LVG TTSLILFCSHFHQ 
Sbjct: 126 LGEPLCFAAFGPFATTAFYLLLGSSSEMRHLPLSGRVLSSSVLVGFTTSLILFCSHFHQ- 184

Query: 162 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIG 221
           V+GD  VGK SPLVRLGTE+G+ VV+W + +LYS+L  +GL+R LPL C  +C +T P+G
Sbjct: 185 VDGDLAVGKYSPLVRLGTEKGAFVVRWTIRLLYSMLLVLGLTRILPLPCTLMCFLTLPVG 244

Query: 222 KLVVSYVEENHKDKGKIFMAKYYCVR 247
            LV SYVE++HKD GKIFMAKYYCVR
Sbjct: 245 NLVSSYVEKHHKDNGKIFMAKYYCVR 270

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:2036484	382	ABC4 "ABERRANT CHLOROPLAST DEV	0.801	0.581	0.623	1.6e-72

TAIR|locus:2036484 ABC4 "ABERRANT CHLOROPLAST DEVELOPMENT 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 139/223 (62%), Positives = 166/223 (74%)

Query:    42 LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
             L+GSRTGTL  A   L LG  GL W S+ A N+RAI+LL  A++CGY+YQCPPFRLSYQG
Sbjct:   161 LVGSRTGTLAAAITSLALGVSGLVWTSLNASNIRAILLLASAILCGYVYQCPPFRLSYQG 220

Query:   102 LGEPLCXXXXXXXXXXXXYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
             LGEPLC            YLLLGS+ E   L ++  VLS+S+LVG TTSLILFCSHFHQV
Sbjct:   221 LGEPLCFAAFGPFATTAFYLLLGSSSEMRHLPLSGRVLSSSVLVGFTTSLILFCSHFHQV 280

Query:   162 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIG 221
              +GD  VGK SPLVRLGTE+G+ VV+W + +LYS+L  +GL+R LPL C  +C +T P+G
Sbjct:   281 -DGDLAVGKYSPLVRLGTEKGAFVVRWTIRLLYSMLLVLGLTRILPLPCTLMCFLTLPVG 339

Query:   222 KLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR 264
              LV SYVE++HKD GKIFMAKYYCVR HAL GAAL  GL+ AR
Sbjct:   340 NLVSSYVEKHHKDNGKIFMAKYYCVRLHALLGAALSLGLVIAR 382


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.331   0.143   0.448    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      277       265   0.00093  114 3  11 21  0.48    32
                                                     32  0.50    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  191 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.26u 0.09s 21.35t   Elapsed:  00:00:01
  Total cpu time:  21.26u 0.09s 21.35t   Elapsed:  00:00:01
  Start:  Fri May 10 20:27:32 2013   End:  Fri May 10 20:27:33 2013

GO:0004659 "prenyltransferase activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009772 "photosynthetic electron transport in photosystem II" evidence=IMP

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0042372 "phylloquinone biosynthetic process" evidence=IMP

GO:0046428 "1,4-dihydroxy-2-naphthoate octaprenyltransferase activity" evidence=ISS

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.2__402__AT1G60600.1	annotation not avaliable (287 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_502237.1	annotation not avaliable (387 aa)			•	•			•		0.710
	fgenesh2_kg.1__2552__AT1G23360.1	annotation not avaliable (262 aa)	•					•	•		0.689
	fgenesh2_kg.2__407__AT1G60550.1	annotation not avaliable (337 aa)	•			•			•		0.661
	fgenesh2_kg.2__1712__AT1G74470.1	annotation not avaliable (467 aa)				•		•			0.583
	fgenesh2_kg.7__8__AT4G38160.2	annotation not avaliable (339 aa)				•			•		0.504
	scaffold_201744.1	annotation not avaliable (1716 aa)				•			•		0.482
	fgenesh2_kg.7__863__AT4G32770.1	annotation not avaliable (482 aa)							•		0.469
	fgenesh2_kg.1__2880__AT1G27300.1	annotation not avaliable (193 aa)					•				0.464
	scaffold_500326.1	annotation not avaliable (175 aa)				•					0.440
	fgenesh2_kg.7__1935__AT4G23660.1	annotation not avaliable (405 aa)							•		0.440

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	277
PLN02922	315	PLN02922, PLN02922, prenyltransferase	1e-117
PRK07419	304	PRK07419, PRK07419, 1,4-dihydroxy-2-naphthoate oct	1e-54
TIGR02235	285	TIGR02235, menA_cyano-plnt, 1,4-dihydroxy-2-naphth	1e-45
COG1575	303	COG1575, MenA, 1,4-dihydroxy-2-naphthoate octapren	4e-14
PRK05951	296	PRK05951, ubiA, prenyltransferase; Reviewed	2e-04
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	3e-04

>gnl|CDD|215499 PLN02922, PLN02922, prenyltransferase

 Score =  338 bits (868), Expect = e-117
 Identities = 157/226 (69%), Positives = 181/226 (80%), Gaps = 4/226 (1%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L+GSR G L  A   L LG  GL WAS+ AGN+R I+LL  A++CGY+YQCPPFRLSY+G
Sbjct: 91  LVGSRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQCPPFRLSYKG 150

Query: 102 LGEPLCFAAFGPFATTAFYLLLGS---TRENLCLSITATVLSASLLVGLTTSLILFCSHF 158
           LGEPLCFAAFGP ATTAFYL L S     E   L +T TVLSAS+LVGLTT+LILFCSHF
Sbjct: 151 LGEPLCFAAFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHF 210

Query: 159 HQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTS 218
           HQ+ +GDR VGKMSPLVRLGTE+GS VV+WAV++LYSLL A+GL +ALPL C  LC +T 
Sbjct: 211 HQI-DGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKALPLPCALLCFLTL 269

Query: 219 PIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR 264
           P+GKLVV +VE+NHKD  KIFMAKYYCVR HALFGAAL  GL+ AR
Sbjct: 270 PLGKLVVDFVEKNHKDNAKIFMAKYYCVRLHALFGAALALGLVLAR 315

Length = 315

>gnl|CDD|236015 PRK07419, PRK07419, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

 Score =  178 bits (454), Expect = 1e-54
 Identities = 92/226 (40%), Positives = 131/226 (57%), Gaps = 12/226 (5%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEA-GNLRAIMLLTCAVICGYIYQCPPFRLSYQ 100
           L G+++     A L L+LG +G+   ++++   +  ++LL C +  GY+YQ PPFRL YQ
Sbjct: 88  LTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLLCCFL--GYLYQGPPFRLGYQ 145

Query: 101 GLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQ 160
           GLGEPLCF AFGP A  A       +        +   L+AS+++GL TSLILFCSHFHQ
Sbjct: 146 GLGEPLCFLAFGPLAVAAALYSQTPSW-------SLIPLAASIILGLATSLILFCSHFHQ 198

Query: 161 VVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPI 220
            VE D   GK SP+VRLGT+RG+ ++ W V ++Y+L     L    P + + L  ++ P 
Sbjct: 199 -VEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPWTTL-LSLLSLPF 256

Query: 221 GKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL 266
              ++  V ENH    K+  +K+  VRFH   G  L  GLI A +L
Sbjct: 257 AIKLIRLVRENHDQPEKVSNSKFIAVRFHFWSGLLLSLGLILAYLL 302

Length = 304

>gnl|CDD|131289 TIGR02235, menA_cyano-plnt, 1,4-dihydroxy-2-naphthoate phytyltransferase

 Score =  154 bits (391), Expect = 1e-45
 Identities = 86/222 (38%), Positives = 117/222 (52%), Gaps = 12/222 (5%)

Query: 41  VLLGSRTGTLVTAYLLLVLGFIGLTWASVEA-GNLRAIMLLTCAVICGYIYQCPPFRLSY 99
            L GSR+     A   L++G +G+   S      + A++ L C +  GY+YQ PPFRL Y
Sbjct: 74  NLTGSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALVGLCCFL--GYLYQGPPFRLGY 131

Query: 100 QGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFH 159
           QGLGEP+C+  FGP A  A       +              AS+LVGL T+LILFCSHFH
Sbjct: 132 QGLGEPICWLCFGPLAIAAALYAQSQSFS-------LIPWKASILVGLATTLILFCSHFH 184

Query: 160 QVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSP 219
           Q VE D   GK SP+VRLGT+  + +V W + + Y +L    +   LP + +   A    
Sbjct: 185 Q-VEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPWTTLLALASIPW 243

Query: 220 IGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLI 261
             KL +  V +NH +  +I   K+  VRFH L G  L  GL+
Sbjct: 244 AVKL-IRLVRQNHNNPEQISNCKFIAVRFHFLSGILLTLGLL 284

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 285

>gnl|CDD|224491 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

 Score = 70.7 bits (174), Expect = 4e-14
 Identities = 41/165 (24%), Positives = 66/165 (40%), Gaps = 13/165 (7%)

Query: 50  LVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFA 109
           L  A  LL    +     +  +  L  ++ L C    G +Y   PF L Y GLGE     
Sbjct: 98  LSLALFLLAGLALLGVILAALSDWLVLLLGLLCIAA-GILYTGGPFPLGYMGLGEIFVGV 156

Query: 110 AFGPFATT-AFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNV 168
            FGP     A+Y+  G         ++  +L  SL VG+  + IL  ++   + E D   
Sbjct: 157 FFGPLIVLGAYYIQTG--------RLSWAILLPSLPVGILIANILLANNLRDIEE-DIRN 207

Query: 169 GKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFL 213
           GK +  VRLG +    +  +A +++ + L  +            L
Sbjct: 208 GKYTLAVRLGRKNARKL--YAALLVVAYLAIVIFVILGLFPVWGL 250

Length = 303

>gnl|CDD|180323 PRK05951, ubiA, prenyltransferase; Reviewed

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 11/155 (7%)

Query: 55  LLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPF 114
           + L    + L W+ V    + A+ L    V     Y  PPF L Y+ LGE L F A+   
Sbjct: 97  IALGAIALQLGWSLVLDRGIGAVTLALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHM 156

Query: 115 ATT-AFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSP 173
                 Y+ LG        ++++  L A + +GL  +L+L  S+  + +E D   G  + 
Sbjct: 157 LVMGLIYVWLG--------NLSSPNLLAGVPLGLLMALVLL-SNNLRDIEDDERKGIPTL 207

Query: 174 LVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPL 208
            V  G  RG+ +  +A++  Y +L  + ++   PL
Sbjct: 208 AVIFGR-RGAALYIFALLSPYVILQILLIAILTPL 241

Length = 296

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 40/187 (21%), Positives = 66/187 (35%), Gaps = 9/187 (4%)

Query: 55  LLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPF 114
           LLL L  + L            ++L    ++ G +Y  PP RL  + L   L        
Sbjct: 73  LLLGLALLLLGLLLALLLGPLLLLLGLLGLLLGLLYS-PPLRLKRRPLLGELVVGLAFGL 131

Query: 115 ATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPL 174
                   +G         I + +L  +L V L +  IL  +    V EGDR  G  +  
Sbjct: 132 LILLGAYAVGGD-------IPSPLLLLALPVFLLSLAILLTNDIRDV-EGDRKAGIRTLP 183

Query: 175 VRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKD 234
           VRLG +R   +    +     LL  + L  A  L  + +  +   +          N ++
Sbjct: 184 VRLGRKRALALYALLLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLRRRNPEE 243

Query: 235 KGKIFMA 241
             + F+ 
Sbjct: 244 PARTFLF 250

Length = 259

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	100.0
PLN02922	315	prenyltransferase	100.0
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	100.0
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	100.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK13105	282	ubiA prenyltransferase; Reviewed	99.97
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	99.96
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	99.96
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	99.93
PLN00012	375	chlorophyll synthetase; Provisional	99.91
PRK12872	285	ubiA prenyltransferase; Reviewed	99.91
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	99.89
PRK13591	307	ubiA prenyltransferase; Provisional	99.87
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.86
KOG4581	359	consensus Predicted membrane protein [Function unk	99.85
PRK12875	282	ubiA prenyltransferase; Reviewed	99.84
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.8
PRK12884	279	ubiA prenyltransferase; Reviewed	99.79
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.78
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.73
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.73
PRK12871	297	ubiA prenyltransferase; Reviewed	99.72
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.71
PRK12888	284	ubiA prenyltransferase; Reviewed	99.7
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.69
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.69
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.67
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.66
PLN02878	280	homogentisate phytyltransferase	99.64
PRK12882	276	ubiA prenyltransferase; Reviewed	99.63
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.63
PRK12886	291	ubiA prenyltransferase; Reviewed	99.63
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.62
PRK13595	292	ubiA prenyltransferase; Provisional	99.62
PRK12874	291	ubiA prenyltransferase; Reviewed	99.59
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.58
PRK13106	300	ubiA prenyltransferase; Reviewed	99.34
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.26
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.25
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.19
PRK12895	286	ubiA prenyltransferase; Reviewed	99.15
PRK12876	300	ubiA prenyltransferase; Reviewed	99.04
PRK12873	294	ubiA prenyltransferase; Reviewed	98.67
PLN02776	341	prenyltransferase	98.6
PRK13592	299	ubiA prenyltransferase; Provisional	98.17
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	97.06
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	96.46
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	94.63
PRK08238	479	hypothetical protein; Validated	94.26
PRK12884	279	ubiA prenyltransferase; Reviewed	92.77
PRK12873	294	ubiA prenyltransferase; Reviewed	92.13
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	91.98
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	91.81
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	91.56
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	91.53
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	91.34
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	90.8
PRK12882	276	ubiA prenyltransferase; Reviewed	90.4
PRK12895	286	ubiA prenyltransferase; Reviewed	90.37
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	89.86
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	89.8
PRK04375	296	protoheme IX farnesyltransferase; Provisional	89.37
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	89.25
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	88.67
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	88.54
PLN02776	341	prenyltransferase	88.4
PRK12875	282	ubiA prenyltransferase; Reviewed	87.91
PRK13362	306	protoheme IX farnesyltransferase; Provisional	87.91
PRK13592	299	ubiA prenyltransferase; Provisional	85.87
PRK12888	284	ubiA prenyltransferase; Reviewed	85.78
PRK12886	291	ubiA prenyltransferase; Reviewed	85.67
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	85.57
PRK13595	292	ubiA prenyltransferase; Provisional	85.0
PRK12872	285	ubiA prenyltransferase; Reviewed	84.81
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	84.54
PRK08238	479	hypothetical protein; Validated	84.35
PRK12876	300	ubiA prenyltransferase; Reviewed	84.14
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	84.0
PRK13105	282	ubiA prenyltransferase; Reviewed	82.31
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	82.26
PRK12874	291	ubiA prenyltransferase; Reviewed	81.62

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=100.00  E-value=6.3e-49  Score=366.55  Aligned_cols=245  Identities=37%  Similarity=0.582  Sum_probs=224.6

Q ss_pred             cCccccceeeeeeeehhccc---------------cCCcceeeeeeccCCHHHHHHHHHHHHHHHH-HHHHHHHHhhchH
Q 023777           11 YSKVCPRATFLLFCPSVLYS---------------KESHWLVISFVLLGSRTGTLVTAYLLLVLGF-IGLTWASVEAGNL   74 (277)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~n~ig~~~~v~~~~~~~l~~~~-~Gl~~~l~~~~~~   74 (277)
                      +|+.+|.++++.+.+.+..+               .|+|.+....|.++++|++.+.+..|+++++ +|++  ++..+||
T Consensus        42 ~~~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~--L~~~~g~  119 (304)
T PRK07419         42 TGVFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKNKFHSVVNLTGNKSLVFWLANLFLLLGLLGILA--IALQSDW  119 (304)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCcccccCcHHHHHHHHHHHHHHHHHHHHH--HHHhhcH
Confidence            47899999999988887755               3444344566888899999999999999996 8887  6679999


Q ss_pred             HHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHH
Q 023777           75 RAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILF  154 (277)
Q Consensus        75 ~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g~~~~~~~~~~~~~ll~slp~gll~~~ill  154 (277)
                      +++.+|++|++++|+||+||+|+||+|+||++++++||++++.++||+|+++       +++..++.|+|.|++++++|+
T Consensus       120 ~~l~ig~~g~~~~~~YT~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yv~t~~-------~~~~~~~~sl~~gll~~~IL~  192 (304)
T PRK07419        120 TVLGLVLLCCFLGYLYQGPPFRLGYQGLGEPLCFLAFGPLAVAAALYSQTPS-------WSLIPLAASIILGLATSLILF  192 (304)
T ss_pred             HHHHHHHHHHHHhheccCCCcccCCCCchHHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998       899999999999999999999


Q ss_pred             hhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccC
Q 023777          155 CSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKD  234 (277)
Q Consensus       155 ~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~lP~~~ll~~lltlPla~~~~~~~~~~~~~  234 (277)
                      +||+||+ |+||++||||+||++|+|+|+++|.++...+|++++..+..|..|+++++ +++++|++.++.|++.+++++
T Consensus       193 ~Nn~rD~-e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~~p~~~Ll-~ll~lPl~~~~~~~~~~~~~~  270 (304)
T PRK07419        193 CSHFHQV-EDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPWTTLL-SLLSLPFAIKLIRLVRENHDQ  270 (304)
T ss_pred             HcCCcch-hhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHcCCC
Confidence            9999999 99999999999999999999999999999999999999999999999877 499999999999999887556


Q ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023777          235 KGKIFMAKYYCVRFHALFGAALVAGLITARIL  266 (277)
Q Consensus       235 ~~~~~~~~~~t~k~~~l~~lll~iglll~~~~  266 (277)
                      ++++.+.++.|++.++++++++++|++++..+
T Consensus       271 ~~~l~~~l~~t~~~~~l~g~l~~l~~~l~~~~  302 (304)
T PRK07419        271 PEKVSNSKFIAVRFHFWSGLLLSLGLILAYLL  302 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            77888999999999999999999999997763

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=100.00  E-value=2e-48  Score=360.30  Aligned_cols=240  Identities=35%  Similarity=0.558  Sum_probs=221.2

Q ss_pred             cCccccceeeeeeeehhccc---------------cCCcceeeeeeccCCHHHHHHHHHHHHHHHH-HHHHHHHHhhchH
Q 023777           11 YSKVCPRATFLLFCPSVLYS---------------KESHWLVISFVLLGSRTGTLVTAYLLLVLGF-IGLTWASVEAGNL   74 (277)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~n~ig~~~~v~~~~~~~l~~~~-~Gl~~~l~~~~~~   74 (277)
                      +|+.+|.+.++.+++.+..+               .|++++....|.+++++++++.+..++++++ +|++  ++..++|
T Consensus        29 ~~~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~~~~~~~v~~~~~~~~~ia~~~g~~--L~~~~~~  106 (285)
T TIGR02235        29 GGVFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLTGSRSLVFWLANFFLLIGLVGIAA--LSWRWQI  106 (285)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCcccccCcHHHHHHHHHHHHHHHHHHHHH--HHHHhhH
Confidence            47899999999998877665               3555555667888999999999999999996 7777  6778999


Q ss_pred             HHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHH
Q 023777           75 RAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILF  154 (277)
Q Consensus        75 ~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g~~~~~~~~~~~~~ll~slp~gll~~~ill  154 (277)
                      +++.+|++|++++|+||+||+|+||+|+||++++++||++++.++||+|+++       ++|..++.|+|.|+.++++|+
T Consensus       107 ~~l~lg~~g~~~~~~Yt~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yvqt~~-------~~~~~~l~sl~~gl~~~~iL~  179 (285)
T TIGR02235       107 TVLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQSQS-------FSLIPWKASILVGLATTLILF  179 (285)
T ss_pred             HHHHHHHHHHHHHHhhcCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCc-------CcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998       899999999999999999999


Q ss_pred             hhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccC
Q 023777          155 CSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKD  234 (277)
Q Consensus       155 ~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~lP~~~ll~~lltlPla~~~~~~~~~~~~~  234 (277)
                      +||+||+ |+|+++||||+||++|+|+|.++|..+...+|++++..+..|..||++++ +++++|++.++.|++++++++
T Consensus       180 ~Nn~rD~-e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~ll-~ll~lPl~~~~~~~~~~~~~~  257 (285)
T TIGR02235       180 CSHFHQV-EDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPWTTLL-ALASIPWAVKLIRLVRQNHNN  257 (285)
T ss_pred             hcCCccc-hhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHcCCC
Confidence            9999999 99999999999999999999999999999999999999999999999887 499999999999999887556


Q ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHH
Q 023777          235 KGKIFMAKYYCVRFHALFGAALVAGLI  261 (277)
Q Consensus       235 ~~~~~~~~~~t~k~~~l~~lll~igll  261 (277)
                      +++..+.+++|++.+.++++++++|++
T Consensus       258 ~~~l~~~l~~t~~~~~~~g~l~~~g~~  284 (285)
T TIGR02235       258 PEQISNCKFIAVRFHFLSGILLTLGLL  284 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777888999999999999999999976

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PLN02922 prenyltransferase

Probab=100.00  E-value=2.6e-47  Score=357.34  Aligned_cols=252  Identities=64%  Similarity=1.048  Sum_probs=219.0

Q ss_pred             cCccccceeeeeeeehhccc---------------cCCcceeeeeeccCCHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 023777           11 YSKVCPRATFLLFCPSVLYS---------------KESHWLVISFVLLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLR   75 (277)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~n~ig~~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~   75 (277)
                      +|+.+|.+.++++.+++.++               .|++..+...|.+++||++++.++.|+++++.|++.....+++|+
T Consensus        45 ~g~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~~~s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~  124 (315)
T PLN02922         45 TGLFDARRYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVNLVGSRRGVLAAAIGCLALGAAGLVWASLVAGNIR  124 (315)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHccChH
Confidence            48999999999999988877               232222333577889999999999999999876663222247899


Q ss_pred             HHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCcc---ccccccchHHHHHHHHHHHHHHHHH
Q 023777           76 AIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTR---ENLCLSITATVLSASLLVGLTTSLI  152 (277)
Q Consensus        76 il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g~~---~~~~~~~~~~~ll~slp~gll~~~i  152 (277)
                      ++.+|++|++++|+||+||+|+||+|+||++++++||++++.++||+|++..   .....+++++.++.|+|.+++++++
T Consensus       125 ~l~iG~~g~~~~~~Yt~gP~pl~y~gLGE~~v~i~fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~i  204 (315)
T PLN02922        125 VILLLAAAILCGYVYQCPPFRLSYKGLGEPLCFAAFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLI  204 (315)
T ss_pred             HHHHHHHHHHHHHHHhcCCcccccCcchHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998831   1111236788999999999999999


Q ss_pred             HHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhc
Q 023777          153 LFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENH  232 (277)
Q Consensus       153 ll~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~lP~~~ll~~lltlPla~~~~~~~~~~~  232 (277)
                      |++||+||+ |+||++||||+||++|+|+|+++|.++...+|++++..+..|..|+++++.+++++|++.+..+.+++++
T Consensus       205 L~~Nn~rD~-e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~~l~~ll~lpl~~~~~~~~~~~~  283 (315)
T PLN02922        205 LFCSHFHQI-DGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKALPLPCALLCFLTLPLGKLVVDFVEKNH  283 (315)
T ss_pred             HHHccCcch-hhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999 9999999999999999999999999999999999999999999999865446899999999999998876


Q ss_pred             cCchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023777          233 KDKGKIFMAKYYCVRFHALFGAALVAGLITA  263 (277)
Q Consensus       233 ~~~~~~~~~~~~t~k~~~l~~lll~iglll~  263 (277)
                      +++.++.+.++.|++.+.++++++++|++++
T Consensus       284 ~~~~~l~~~~~~t~~~~~l~g~ll~~g~~l~  314 (315)
T PLN02922        284 KDNAKIFMAKYYCVRLHALFGAALALGLVLA  314 (315)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6677888889999999999999999999865

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=100.00  E-value=1.4e-45  Score=340.62  Aligned_cols=244  Identities=20%  Similarity=0.290  Sum_probs=213.6

Q ss_pred             ccCccccceeeeeeeehhccc---------------cCCcc--eeeeeeccCC----HHHHHHHHHHHHHHHH-HHHHHH
Q 023777           10 IYSKVCPRATFLLFCPSVLYS---------------KESHW--LVISFVLLGS----RTGTLVTAYLLLVLGF-IGLTWA   67 (277)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~--~~~~~n~ig~----~~~v~~~~~~~l~~~~-~Gl~~~   67 (277)
                      +++.++|-.+++++.++...+               .|+|+  +..+.|++.+    ++.+...+..++..++ +|++  
T Consensus        37 ~~~~f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~--  114 (303)
T COG1575          37 YGKSFNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVI--  114 (303)
T ss_pred             HccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCHHHHHHHHHHHHHHHHHHHHH--
Confidence            344789999999999887766               45433  3566677775    4556666666655554 4544  


Q ss_pred             HHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHH
Q 023777           68 SVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGL  147 (277)
Q Consensus        68 l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g~~~~~~~~~~~~~ll~slp~gl  147 (277)
                      +...+||.++.+|.+|+++||+||+||+|++|+|+||++|+++||++++.++||+|+++       ++|..++.|+|+++
T Consensus       115 ~~~~s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~l~v~g~~yiqt~~-------~~~~~ll~slp~gi  187 (303)
T COG1575         115 LAALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLIVLGAYYIQTGR-------LSWAILLPSLPVGI  187 (303)
T ss_pred             HHHHhhhHHHHHHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999998       89999999999999


Q ss_pred             HHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHH
Q 023777          148 TTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSY  227 (277)
Q Consensus       148 l~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~lP~~~ll~~lltlPla~~~~~~  227 (277)
                      ++++||++||+||+ |+|+|+||+|+|||+|+++++++|..++..+|++.++.++.+..|++.++ .++++|++.|..|.
T Consensus       188 l~~~Il~aNNirDi-e~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~~~ll-~ll~~Pl~ir~~r~  265 (303)
T COG1575         188 LIANILLANNLRDI-EEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVWGLL-FLLALPLAIRAARP  265 (303)
T ss_pred             HHHHHHHhcccccc-hhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH-HHHHHHHHHHHHHH
Confidence            99999999999999 99999999999999999999999999999999999999999988888866 49999999999999


Q ss_pred             HHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023777          228 VEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI  265 (277)
Q Consensus       228 ~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~  265 (277)
                      +++++ .+.+..+..+.+.|...++++++.+|+++..+
T Consensus       266 v~~~~-~~~~~~p~l~~~~~~~~~~~~l~~~~i~~~~l  302 (303)
T COG1575         266 VRQNQ-VPATLVPMLKNTVKANLLWNLLLAVGILLSQL  302 (303)
T ss_pred             HHhcc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99984 45577888889999999999999999887653

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=100.00  E-value=2.2e-45  Score=344.56  Aligned_cols=244  Identities=17%  Similarity=0.135  Sum_probs=213.7

Q ss_pred             ccCccccceeeeeeeehhccc---------------cCCcceeeeeeccCC----HHHHHHHHHHHHHHHH-HHHHHHHH
Q 023777           10 IYSKVCPRATFLLFCPSVLYS---------------KESHWLVISFVLLGS----RTGTLVTAYLLLVLGF-IGLTWASV   69 (277)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~n~ig~----~~~v~~~~~~~l~~~~-~Gl~~~l~   69 (277)
                      .+|+.+|.+.++++.+.+..+               +|++.+....|.+++    ||+++..++.|+++++ +|++  ++
T Consensus        32 ~~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~--L~  109 (317)
T PRK13387         32 VAKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVAAILGVY--LC  109 (317)
T ss_pred             hCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCHHHHHHHHHHHHHHHHHHHHH--HH
Confidence            356889988888888876444               333334444555553    7999999999999997 8888  67


Q ss_pred             hhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHH----------
Q 023777           70 EAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVL----------  139 (277)
Q Consensus        70 ~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g~~~~~~~~~~~~~l----------  139 (277)
                      .++||.++++|++|++++++||+||+|+||+|+||++++++||++++.++||+|+++       +++..+          
T Consensus       110 ~~~g~~~l~igl~g~~~~~~Yt~gP~~l~y~gLGe~~v~i~~G~~~v~g~~yv~t~~-------~~~~~~~~~~~~~~~~  182 (317)
T PRK13387        110 MNTSWLLLVIGLICFAIGILYTGGPLPLSRMPLGEIFSGLTMGFGIFLLAVYINTNT-------ITIESLLFQGEMFTIQ  182 (317)
T ss_pred             HHhcHHHHHHHHHHHHHhhhhcCCCcccccCccHHHHHHHHHHHHHHHHHHHHhcCC-------CchHHHHhcccchhhc
Confidence            899999999999999999999999999999999999999999999999999999987       444433          


Q ss_pred             ----------HHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 023777          140 ----------SASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLS  209 (277)
Q Consensus       140 ----------l~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~lP~~  209 (277)
                                +.|+|.+++++++|++||+||+ |+||++||||+|+++|+|+|+++|..+...+|++++..+..|.+|++
T Consensus       183 ~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~-e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~g~lp~~  261 (317)
T PRK13387        183 GNLIAIIAIGVISLPIIFTIANIMLANNLRDL-DEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLMGYISPW  261 (317)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhcCCccc-hhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence                      4999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023777          210 CIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR  264 (277)
Q Consensus       210 ~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~  264 (277)
                      +++ +++++|++.++.|+++++++++++..+..+.+.+.+..+++++++|++++.
T Consensus       262 ~ll-~ll~lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~ll~~  315 (317)
T PRK13387        262 ALL-SFLTLRKPISNLQSFQKEAKDPKYFVIAIRNTVLTNTTFGFLLSASLLIQY  315 (317)
T ss_pred             HHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            877 499999999999999887556666667778899999999999999998854

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=100.00  E-value=6.8e-45  Score=336.62  Aligned_cols=238  Identities=16%  Similarity=0.169  Sum_probs=208.8

Q ss_pred             ccCccccceeeeeeeehhccc----------c-----CCcceeeeeeccCC----HHHHHHHHHHHHHHHH-HHHHHHHH
Q 023777           10 IYSKVCPRATFLLFCPSVLYS----------K-----ESHWLVISFVLLGS----RTGTLVTAYLLLVLGF-IGLTWASV   69 (277)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~----------~-----~~~~~~~~~n~ig~----~~~v~~~~~~~l~~~~-~Gl~~~l~   69 (277)
                      ..|+.+|.+.++.+.+.+..+          |     |++......|.+++    +|+++..+..++++++ +|++  ++
T Consensus        21 ~~~~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~--l~   98 (284)
T TIGR00751        21 WLHAFVWLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLV--LA   98 (284)
T ss_pred             HcCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHH--HH
Confidence            446889999888888876554          2     22211122344443    7899999999999886 8887  55


Q ss_pred             hhchH------HHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHH
Q 023777           70 EAGNL------RAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASL  143 (277)
Q Consensus        70 ~~~~~------~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g~~~~~~~~~~~~~ll~sl  143 (277)
                      +.++|      +++.+|++|++++|+||+||+|+||+|+||++++++||++++.|+||+|+++       ++++.++.|+
T Consensus        99 ~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~yvq~~~-------~~~~~ll~sl  171 (284)
T TIGR00751        99 LLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQYLQAHR-------VDWVGILPAV  171 (284)
T ss_pred             HhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHH
Confidence            67787      7889999999999999999999999999999999999999999999999998       8999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHH
Q 023777          144 LVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKL  223 (277)
Q Consensus       144 p~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~lP~~~ll~~lltlPla~~  223 (277)
                      |.+++++++|++||+||+ |+|+++||||+|||+|+|+|+++|.++...+|++.+..+..+..|+++++ +++++|++.+
T Consensus       172 ~~g~l~~~il~~Nn~~D~-~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~~~ll-~ll~lPl~~~  249 (284)
T TIGR00751       172 ATGLLACAVLNINNLRDI-PTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISWWCVL-FLLAAPLLLK  249 (284)
T ss_pred             HHHHHHHHHHHHcCcccc-hhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH-HHHHHHHHHH
Confidence            999999999999999999 99999999999999999999999999999999998888888889999877 4999999999


Q ss_pred             HHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHH
Q 023777          224 VVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAG  259 (277)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~ig  259 (277)
                      +.|.++++ ++++++.+..+.|++.++++++++++|
T Consensus       250 ~~~~~~~~-~~~~~l~~~l~~t~~~~~l~~~l~~ig  284 (284)
T TIGR00751       250 AAGPVRSG-RGPRELRPVLRDTGLAMLLWNLLFALG  284 (284)
T ss_pred             HHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999885 567788889999999999999998865

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=9.9e-38  Score=290.09  Aligned_cols=238  Identities=18%  Similarity=0.246  Sum_probs=202.5

Q ss_pred             cCccccceeeeeeeehhccc---------------cCCcceee-eeeccC----CHHHHHHHHHHHHHHHH-HHHHHHHH
Q 023777           11 YSKVCPRATFLLFCPSVLYS---------------KESHWLVI-SFVLLG----SRTGTLVTAYLLLVLGF-IGLTWASV   69 (277)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~-~~n~ig----~~~~v~~~~~~~l~~~~-~Gl~~~l~   69 (277)
                      +|+++|...++++.+.+..+               .|++.... ..+.+.    +++++...+..++++++ +|++  +.
T Consensus        34 ~~~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~--l~  111 (296)
T PRK05951         34 FRSFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWS--LV  111 (296)
T ss_pred             cCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHH--HH
Confidence            48899999988888775543               22220000 123332    27899999999888885 6666  55


Q ss_pred             hhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHH
Q 023777           70 EAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTT  149 (277)
Q Consensus        70 ~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g~~~~~~~~~~~~~ll~slp~gll~  149 (277)
                      ..+++..+.+|++|+++++.||+||+|+||+|+||+.++++||++++.|++|+|++.       +++..+..|+|.++++
T Consensus       112 ~~~~~~~l~l~~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g~~~vlg~~~~~~~~-------~~~~~~~~sl~~~l~~  184 (296)
T PRK05951        112 LDRGIGAVTLALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHMLVMGLIYVWLGN-------LSSPNLLAGVPLGLLM  184 (296)
T ss_pred             HhccHHHHHHHHHHHHHHHHHcCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHHH
Confidence            688999999999999999999999999999999999999999999999999999998       8899999999999999


Q ss_pred             HHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHH
Q 023777          150 SLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVE  229 (277)
Q Consensus       150 ~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~lP~~~ll~~lltlPla~~~~~~~~  229 (277)
                      ++++++||+||+ |+||++||||+|+++|+|++ ++|..+...+|+.++..+..|..|++.++ .++++|++.+..+...
T Consensus       185 ~~il~~n~~~D~-e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ll~lp~~~~~~~~~~  261 (296)
T PRK05951        185 ALVLLSNNLRDI-EDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLW-ALLSLLVAYALCLWQL  261 (296)
T ss_pred             HHHHHHCCCccc-hhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHH
Confidence            999999999999 99999999999999999999 88999999999999999999999998876 4999999999988887


Q ss_pred             hhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023777          230 ENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI  265 (277)
Q Consensus       230 ~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~  265 (277)
                      ++. ++++ . .  .+.|.+.++++++++|++++..
T Consensus       262 ~~~-~~~~-~-~--~~~~~~~~~g~l~~~~~~l~~~  292 (296)
T PRK05951        262 RKF-PPDP-D-E--ATVQLFMLFGYLYILATLLSAL  292 (296)
T ss_pred             hhC-cccc-c-H--HHHHHHHHHHHHHHHHHHHHHH
Confidence            653 3332 2 2  4999999999999999998764

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=100.00  E-value=1.2e-35  Score=274.62  Aligned_cols=206  Identities=20%  Similarity=0.278  Sum_probs=188.3

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023777           46 RTGTLVTAYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG  124 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~-~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~  124 (277)
                      +|++...+..++++++ +|++  +....+++.+.+|++|++++++||.||+|++|+|+||+.+++++|++++.+++|+|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~g~~--l~~~~~~~~~~~~~~~~~~~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~~~~~~~  163 (293)
T PRK06080         86 PKQVKRAAIAFFGLAALLGLY--LVAVSGWWLLLLGLLCIAAAILYTGGPKPYGYTGLGELFVGVFFGLVIVLGTYYLQA  163 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHhhhhcCCCCccCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence            7889999999988886 7776  556679999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023777          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR  204 (277)
Q Consensus       125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g  204 (277)
                      ++       +++.+++.++|.++++.+++++||+||+ |+|+++||||+|+++|+|++++++..+..++|+..+..++.|
T Consensus       164 ~~-------~~~~~~~~~l~~~l~~~~~~~~n~~~D~-~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~  235 (293)
T PRK06080        164 GT-------VDSAVFLPALPCGLLIGAVLLANNIRDI-ETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLG  235 (293)
T ss_pred             CC-------CCHHHHHHHHHHHHHHHHHHHhcCCCcc-hhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            98       8899999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023777          205 ALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA  263 (277)
Q Consensus       205 ~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~  263 (277)
                      .+|++.++ +++++|++.+.++++.+++ ++++..+..+.+++.+..+++++++|++++
T Consensus       236 ~~~~~~ll-~ll~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (293)
T PRK06080        236 LASPWGLL-FLLSLPLAVKAARPVLRKQ-KPETLIPALKATGKTNLLFGLLFAIGLLLS  292 (293)
T ss_pred             hhhHHHHH-HHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999876 4999999999999998763 455556666779999999999999998864

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=1.4e-28  Score=227.66  Aligned_cols=196  Identities=15%  Similarity=0.090  Sum_probs=165.5

Q ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHH--HHHhhhhHHHHHHHHH
Q 023777           46 RTGTLVTAYLLLVLGF--IGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEP--LCFAAFGPFATTAFYL  121 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~--~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl--~v~l~~G~l~v~g~yy  121 (277)
                      ++++.+.+..+..++.  .|++  +...++|+.+.+|.+++++++.||+||.|+||+|+||.  .++.++|+ .+.|+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~l~--l~~~~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~-~v~G~~~  153 (282)
T PRK13105         77 DRAMHRTTLWASVVTTVPFLVV--LLAVGSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSP-ALYGLVL  153 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHH-HHHHHHH
Confidence            6778777666666664  3444  55666899999999999999999999999999999999  77888887 8888888


Q ss_pred             HhcCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHH
Q 023777          122 LLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIG  201 (277)
Q Consensus       122 vq~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v  201 (277)
                      + ++.       +++..++.+.++++++.++...||+||+ |+||++||||+|+++|+|+|.+++..+..+++++.+.  
T Consensus       154 ~-~~~-------~~~~~~l~~~~~~~~~~a~~ii~~irDi-e~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~--  222 (282)
T PRK13105        154 A-GAP-------FTAALWAVLAAFFLWGMASHAFGAVQDV-VADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLA--  222 (282)
T ss_pred             h-hcc-------ccHHHHHHHHHHHHHHHHHHHHHhCcch-HhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHH--
Confidence            8 555       6788889999999999999999999999 9999999999999999999999999999999877663  


Q ss_pred             HhhhhhHHHHHHHHhHHHHHHHHHHHHH-hhccCchhhhhhHHHHHHHHHHHHHHHHHHH
Q 023777          202 LSRALPLSCIFLCAMTSPIGKLVVSYVE-ENHKDKGKIFMAKYYCVRFHALFGAALVAGL  260 (277)
Q Consensus       202 ~~g~lP~~~ll~~lltlPla~~~~~~~~-~~~~~~~~~~~~~~~t~k~~~l~~lll~igl  260 (277)
                       .+. |. .++ .++++|++.+..|.+. ++ +++++..+..+.+++.+.++++++++..
T Consensus       223 -~~~-~~-~~l-~ll~~p~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~l~~~~~  277 (282)
T PRK13105        223 -LPW-PG-WLA-AVLALPYVVNTARFWSVTD-ADCERANRGWRRFLWLNYVSGFLVTMLL  277 (282)
T ss_pred             -HHh-HH-HHH-HHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             232 22 334 4899999999999887 55 5667788888899999999999998843

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=99.96  E-value=4.6e-28  Score=223.42  Aligned_cols=201  Identities=18%  Similarity=0.248  Sum_probs=161.3

Q ss_pred             eeeccCC----HHHHHHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhh
Q 023777           39 SFVLLGS----RTGTLVTAYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFG  112 (277)
Q Consensus        39 ~~n~ig~----~~~v~~~~~~~l~~~~-~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~g-lGEl~v~l~~G  112 (277)
                      ..|.+.+    +|+++..+..+..+++ +|+.     .++|....++.+|++.+++||.||+|+||+| +||+.+++++|
T Consensus        71 ~~Rpi~~G~is~~~a~~~~~~~~~~~~~l~~~-----l~~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~  145 (283)
T TIGR01476        71 PQRPIPSGIISLREVRWNWLVLTVAGLLVALV-----LGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYE  145 (283)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHH
Confidence            3455544    7889999888888885 4433     2456657889999999999999999999998 89999999998


Q ss_pred             HHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHH
Q 023777          113 PFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMI  192 (277)
Q Consensus       113 ~l~v~g~yyvq~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~  192 (277)
                      ..+...++.++ +.       +++..++.+++.++.+.++++.||+||+ |+|+++||||+|+++|+|++++++..+...
T Consensus       146 ~~~~~~~~~~~-~~-------~~~~~~~~~~~~~l~~~~i~~~nd~~D~-~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~  216 (283)
T TIGR01476       146 GLPWMAGHAIF-AP-------LTWQSVVVALIYSLGAHGIMTLNDFKSV-EGDRQLGLRSLPVMIGVKRAAIVAVTTINV  216 (283)
T ss_pred             HHHHHHHHHHh-CC-------CCHHHHHHHHHHHHHHHHHHHHHhccch-hhHHHcCCcCcceEEcHHHHHHHHHHHHHH
Confidence            88777777665 33       6888889999999999999999999999 999999999999999999999999998888


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHH
Q 023777          193 LYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAAL  256 (277)
Q Consensus       193 ~y~~l~~~v~~g~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll  256 (277)
                      +|+..+........|+++.+..++..|...++.|.++++   +++..+....|++.+++++.+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~l~~ll~~p~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  277 (283)
T TIGR01476       217 FQAMVIGLLLIWGQPWVATIVFLLLVAQIYNQIKLFLRD---PQQNYVRYNATANPFYVLGMLA  277 (283)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhC---hHHhhHHhhhhcHHHHHHHHHH
Confidence            887766544444467754333478889988888888764   2223344456999999999775

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=99.96  E-value=6.7e-28  Score=225.27  Aligned_cols=199  Identities=20%  Similarity=0.212  Sum_probs=158.3

Q ss_pred             eeccCC----HHHHHHHHHHHHHHHH-HHHHHHHHhh---chHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhh
Q 023777           40 FVLLGS----RTGTLVTAYLLLVLGF-IGLTWASVEA---GNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAA  110 (277)
Q Consensus        40 ~n~ig~----~~~v~~~~~~~l~~~~-~Gl~~~l~~~---~~~~il~lg~~gil~~~~YS~gP~~l~y~g-lGEl~v~l~  110 (277)
                      +|.+.+    ++++...+..++++++ +|+.  +...   .++..+.+|++|++++++||+||+|+||+| +||+.++..
T Consensus        88 ~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~--l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg~~  165 (306)
T TIGR02056        88 YRPIPSGAISEPEVITQIVLLFIAGIAIAFI--LDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALGAS  165 (306)
T ss_pred             CCCCCCCccCHHHHHHHHHHHHHHHHHHHHH--HHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHHHH
Confidence            455544    6889999998888886 6665  3322   357889999999999999999999999998 899999888


Q ss_pred             hhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHH
Q 023777          111 FGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAV  190 (277)
Q Consensus       111 ~G~l~v~g~yyvq~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~  190 (277)
                      +|..++.+++ .++++       +++..++.+++.++++.++++.||+||+ |+|+++||||+|+++|+|++++++..+.
T Consensus       166 ~~~~~~~~~~-a~~g~-------~~~~~~l~~~~~~l~~~~i~~~n~~~D~-e~D~~~G~~Tlpv~lG~~~a~~~~~~l~  236 (306)
T TIGR02056       166 YIALPWWAGH-ALFGE-------LNPDIAVLTLIYSIAGLGIAIVNDFKSV-EGDRALGLQSLPVAFGIETAAWICVGAI  236 (306)
T ss_pred             HHHHHHHHHH-HHhCC-------CcHHHHHHHHHHHHHHHHHHHHHHccCh-HHHHHcCCcCcchhcChHHHHHHHHHHH
Confidence            8877776654 55676       7889999999999999999999999999 9999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHh-hhhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHH
Q 023777          191 MILYSLLFAIGLS-RALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFG  253 (277)
Q Consensus       191 ~~~y~~l~~~v~~-g~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~  253 (277)
                      ..++.+.+..... +..|++.++ .++++|.+.+..|+++++   +++..+....+++.....|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~ll-~ll~~p~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  296 (306)
T TIGR02056       237 DIFQGLIAAYLLAIGENLYAAAL-VALIIPQITFQDKYFLKD---PLKNDVKYQASAQPFLVLG  296 (306)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHH-HHHHHHHHHHHHHHHHhC---hHhhCcchhhhhhHHHHHH
Confidence            8888765554443 455655555 489999999999988763   2333334334666555444

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=99.93  E-value=3.9e-24  Score=200.53  Aligned_cols=207  Identities=19%  Similarity=0.202  Sum_probs=151.9

Q ss_pred             eeeccCC----HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhH
Q 023777           39 SFVLLGS----RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGP  113 (277)
Q Consensus        39 ~~n~ig~----~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~g-lGEl~v~l~~G~  113 (277)
                      ..|.+.+    ++++...+..++++|+. +.    ...++....++++++++++.||+||+++||++ +||+.+++++|.
T Consensus        98 ~~Rpl~sG~is~~~a~~~~~~l~~~~~~-l~----~~l~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~vg~~~g~  172 (314)
T PRK07566         98 PYRPIPSGAISLRWVLYLIAVLTVLGLA-VA----YLLGPWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEG  172 (314)
T ss_pred             CCCCCCCceeCHHHHHHHHHHHHHHHHH-HH----HHHChHHHHHHHHHHHHHHHhcCCccccccccchhhHHHHHHHHH
Confidence            3455543    68888888888777752 11    22378888899999999999999999999999 799999999987


Q ss_pred             HHHHHH-HHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHH
Q 023777          114 FATTAF-YLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMI  192 (277)
Q Consensus       114 l~v~g~-yyvq~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~  192 (277)
                      ++..++ ++.+++.       .++..++.+++.++.+.+++..||+||+ |+|+++|+||+|+++|++++++++..+...
T Consensus       173 ~~~~~g~~~~~~~~-------~~~~~~l~~~~~~l~~~~~~~~~d~~D~-e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~  244 (314)
T PRK07566        173 LPWWAGAAAFGAGL-------PSWPIVILALLYSLGAHGIMTLNDFKSV-EGDRQLGLRSLPVVFGEKNAARIACVVIDL  244 (314)
T ss_pred             HHHHHHHHHhccCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHh-HhHHHcCCcccceeEcHHHHHHHHHHHHHH
Confidence            765444 4444444       7889999999999999999999999999 999999999999999999999999999988


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023777          193 LYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA  263 (277)
Q Consensus       193 ~y~~l~~~v~~g~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~  263 (277)
                      +|++++........+++..+..++..|.+....+..++. ++++   .....+.+++.+++.+ ..+++++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~ll-~~~~~~~  310 (314)
T PRK07566        245 FQLAVIALLLAWGQPLYAAIVGLLLIPQITLQDRLLRDP-LERD---VWYNASAQPFYVLGML-VTALAIR  310 (314)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhhCh-hhcC---hhhhhhhhHHHHHHHH-HHHHHhc
Confidence            888765443332234433222367888887776663321 2222   2333366666666544 4455443

>PLN00012 chlorophyll synthetase; Provisional

Probab=99.91  E-value=8.5e-23  Score=195.71  Aligned_cols=198  Identities=20%  Similarity=0.202  Sum_probs=149.5

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHH-HhhchHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHHHHH
Q 023777           46 RTGTLVTAYLLLVLGF-IGLTWAS-VEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLL  122 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~-~Gl~~~l-~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~gl-GEl~v~l~~G~l~v~g~yyv  122 (277)
                      ++++...+..++++++ +|+.+.. ....++..+.++++|++++++||+||+++||+|+ |++..+..+|.++..+++ .
T Consensus       167 ~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~-a  245 (375)
T PLN00012        167 ENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWAGQ-A  245 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHHHHHHHH-H
Confidence            5778887777766664 4444211 1125788889999999999999999999999997 899888888877766554 6


Q ss_pred             hcCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHH
Q 023777          123 LGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL  202 (277)
Q Consensus       123 q~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~  202 (277)
                      .++.       +++..++.+++.+++..++++.||++|+ |+|+++|++|+||++|++++++++..+..+..+.++....
T Consensus       246 ~~g~-------~s~~~illal~~~l~~lai~ivnd~~Di-e~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~~~l~  317 (375)
T PLN00012        246 LFGT-------LTPDVVVLTLLYSIAGLGIAIVNDFKSI-EGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVAGYLL  317 (375)
T ss_pred             HcCC-------CCHHHHHHHHHHHHHHHHHHHHhhhcch-hhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6676       7889999999999999999999999999 9999999999999999999999887655555544443333


Q ss_pred             h-hhhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHH
Q 023777          203 S-RALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAAL  256 (277)
Q Consensus       203 ~-g~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll  256 (277)
                      . +..++..++ .++.+|......+.+.+   ++.+..+....+++.+++++.+.
T Consensus       318 ~~~~~~y~~~~-~~l~l~~l~~~~~~~~~---~p~~~~~~~~~~a~~~~~~~~l~  368 (375)
T PLN00012        318 AIGKPYYALAL-LGLIIPQIFFQFKYFLP---DPVKNDVKYQASAQPFLVFGLLV  368 (375)
T ss_pred             HHhHHHHHHHH-HHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 223333334 47888988888887765   34444444555888888888663

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.91  E-value=6.3e-23  Score=188.69  Aligned_cols=196  Identities=19%  Similarity=0.165  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcc-ccccc-chHHHHHhhhhHHHHHHHHHHh
Q 023777           47 TGTLVTAYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFR-LSYQG-LGEPLCFAAFGPFATTAFYLLL  123 (277)
Q Consensus        47 ~~v~~~~~~~l~~~~-~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~-l~y~g-lGEl~v~l~~G~l~v~g~yyvq  123 (277)
                      +.....+..+..+++ +|+.+ +...+||..+.+++++.++++.||.||.| +|+.| +||+.++..+|..++.++++.+
T Consensus        77 ~~~~~~~~~l~~i~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~  155 (285)
T PRK12872         77 TKAYGLFLLLNVLGLYLGAYL-LAVIGGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYYY  155 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHhccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhc
Confidence            455555555555554 55542 23457899999999999999999999874 78876 8999999999999999999998


Q ss_pred             cCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHh
Q 023777          124 GSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLS  203 (277)
Q Consensus       124 ~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~  203 (277)
                      ++.       +++..++.++..++.+......||+||+ |+|+++|++|+|+++|+|++++.+..+..++++..+.....
T Consensus       156 ~~~-------~~~~~~~~~~~~fl~~~~~~~~~d~~D~-e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~  227 (285)
T PRK12872        156 QLT-------IFSLLLLYAVFIFLKSFIREIVFDIKDI-EGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYT  227 (285)
T ss_pred             ccc-------cchHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            775       6778888899999999999999999999 99999999999999999999999999999999999888888


Q ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHH
Q 023777          204 RALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGA  254 (277)
Q Consensus       204 g~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~l  254 (277)
                      |..|++.+.+ ++..|......+++.++ +++++.. ......|.+++.|+
T Consensus       228 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~g~  275 (285)
T PRK12872        228 GLLPLLLLVL-LLLLAYVLYYIIKLFAA-DDKKDLL-YLSLLDKEHMLLGL  275 (285)
T ss_pred             hHhhHHHHHH-HHHHHHHHHHHHHHHhc-ccccchh-HHHHHhHHHHHHHH
Confidence            8889987665 66777777766777665 4444333 22234455555444

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=99.89  E-value=9e-22  Score=184.32  Aligned_cols=164  Identities=20%  Similarity=0.233  Sum_probs=126.7

Q ss_pred             eeeccCC----HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHH-HHhhhhH
Q 023777           39 SFVLLGS----RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPL-CFAAFGP  113 (277)
Q Consensus        39 ~~n~ig~----~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~-v~l~~G~  113 (277)
                      .++.+.+    +++.+..+..+.++|+   .  +....|+..+.+++++.++++.||.||+|+||+|++|.. ++...|.
T Consensus        86 p~rPiasG~ls~~~a~~~~~~~~~lal---~--la~~~~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~  160 (308)
T PRK12887         86 PHLPLAAGEFSRRQGQRIVIITGILAL---I--LAALLGPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGV  160 (308)
T ss_pred             CCCCcCCcccCHHHHHHHHHHHHHHHH---H--HHHHHhHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHH
Confidence            4455544    5777776666655553   2  234578899999999999999999999999999999854 4556666


Q ss_pred             HHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHH
Q 023777          114 FATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMIL  193 (277)
Q Consensus       114 l~v~g~yyvq~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~  193 (277)
                      ....|.++....... ....++..+++.+++..+.+.++.+.||+||+ |+||++|+||+|+++|++++.+++..+..++
T Consensus       161 i~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~-egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~  238 (308)
T PRK12887        161 IVNLGLFLHFQWLLG-GSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDM-EGDRQYQITTFTLRLGKQAVFKLSCWVLTAC  238 (308)
T ss_pred             HHHHHHHHHHHHHHh-ccccCcHHHHHHHHHHHHHHHHHHHHHhccch-hhHHHcCCcchhHHHhHHHHHHHHHHHHHHH
Confidence            666666553211000 00126678889999999999999999999999 9999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHH
Q 023777          194 YSLLFAIGLSRALPLS  209 (277)
Q Consensus       194 y~~l~~~v~~g~lP~~  209 (277)
                      |+..+.....+..++.
T Consensus       239 y~~~i~~~~~~~~~~~  254 (308)
T PRK12887        239 YLGMIAVGLLSLPTVN  254 (308)
T ss_pred             HHHHHHHHHHHhhhHH
Confidence            9988877666655544

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.87  E-value=6.5e-21  Score=177.80  Aligned_cols=150  Identities=17%  Similarity=0.155  Sum_probs=111.9

Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHHheeeccC----Cccc---ccccchHHHHHhhhhHHHHHHHHHHhcCccccccccc
Q 023777           62 IGLTWASVEAGNLRAIMLLTCAVICGYIYQCP----PFRL---SYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSI  134 (277)
Q Consensus        62 ~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~g----P~~l---~y~glGEl~v~l~~G~l~v~g~yyvq~g~~~~~~~~~  134 (277)
                      +|++  +.+..||.+  +++++.+++++||.|    |.|+   ++.|+||+++++++|..++.+....+ +         
T Consensus       111 lGl~--La~~~g~~l--l~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~~-~---------  176 (307)
T PRK13591        111 LGTY--ILAMDGMLL--LAFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSYC-G---------  176 (307)
T ss_pred             HHHH--HHHHHhHHH--HHHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhhh-h---------
Confidence            5555  456777754  678999999999998    9888   77789999999999997765422211 1         


Q ss_pred             hHHHHHHHHHHHHHH----HHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023777          135 TATVLSASLLVGLTT----SLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSC  210 (277)
Q Consensus       135 ~~~~ll~slp~gll~----~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~lP~~~  210 (277)
                      +   +..+++.++..    ......||+||+ |+|+++||+|+|+++|+++|++++..+..++|++++..+..|.+|+..
T Consensus       177 ~---~~~~~~i~l~~~~~l~~~~iindirDi-EGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~  252 (307)
T PRK13591        177 S---LIPVGLIFLFFGVKLFINSCVYDFKDV-KGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEP  252 (307)
T ss_pred             h---HHHHHHHHHHHHHHHHHHHHHHHhhhh-HhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            1   12333444444    333378999999 999999999999999999999999999999999999999999999765


Q ss_pred             HHHHHhHHHHHHHHHHHHHh
Q 023777          211 IFLCAMTSPIGKLVVSYVEE  230 (277)
Q Consensus       211 ll~~lltlPla~~~~~~~~~  230 (277)
                      ... +-+++.-.--.+...+
T Consensus       253 ~~~-~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        253 IIL-LYSFVCGLICIQVYSS  271 (307)
T ss_pred             hhh-HHHHHHHHHHHHHHcC
Confidence            443 4455554444444443

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.86  E-value=3e-20  Score=175.60  Aligned_cols=142  Identities=20%  Similarity=0.282  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHhh----chHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHH
Q 023777           46 RTGTLVTAYLLLVLGF-IGLTWASVEA----GNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAF  119 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~-~Gl~~~l~~~----~~~~il~lg~~gil~~~~YS~gP~~l~y~gl-GEl~v~l~~G~l~v~g~  119 (277)
                      +|+++..+..+..+|+ +|++  +...    +++.++..++++++++++||.||+++||+++ ||+.+++.+|..++.+.
T Consensus        94 ~~~al~~~~~l~~la~~lg~~--L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~~~~~~~  171 (331)
T PRK12392         94 EKEALWNSIIVLLLAIGLGVW--LGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFITFLSA  171 (331)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHHHHHHHHH
Confidence            7889998888888886 6665  4333    2566777888999999999999999999985 99999999997665544


Q ss_pred             HHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHH
Q 023777          120 YLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF  198 (277)
Q Consensus       120 yyvq~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~  198 (277)
                       +.+.++       +++..++.+++.++++.+.+..||++|+ |+|++.|+||+|+++|++++.++-.....++.++.+
T Consensus       172 -~a~~g~-------~~~~~~~l~~~~~l~~~~~~~i~d~~D~-egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~  241 (331)
T PRK12392        172 -NALFSD-------IRPEVVWLAGLNFFMAIALIIMNDFKSV-EGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFA  241 (331)
T ss_pred             -HHHhcC-------CCHHHHHHHHHHHHHHHHHHHHHcccch-hhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHH
Confidence             455555       6788888999999999999999999999 999999999999999999998776555545554443

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.85  E-value=6.7e-22  Score=176.49  Aligned_cols=212  Identities=17%  Similarity=0.254  Sum_probs=169.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHH
Q 023777           44 GSRTGTLVTAYLLLVLGFIGLTWASVEA----GNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAF  119 (277)
Q Consensus        44 g~~~~v~~~~~~~l~~~~~Gl~~~l~~~----~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~  119 (277)
                      -.|..|.+.+..+..+|+.+.....+..    ....++.+|.++  .++.||+| +.+||..+||+...+.|||+.++.+
T Consensus       143 l~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls--~sflytgg-igfkyialgdliili~fgpiavlfa  219 (359)
T KOG4581|consen  143 LEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLS--GSFLYTGG-IGFKYIALGDLIILILFGPIAVLFA  219 (359)
T ss_pred             cChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcc--cceeEecc-cceEEEeccCEEEEEeechHHHHHH
Confidence            3356777888888888863333211111    123566777554  79999998 6999999999999999999999999


Q ss_pred             HHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHH
Q 023777          120 YLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFA  199 (277)
Q Consensus       120 yyvq~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~  199 (277)
                      |-.|+|+       +.|..+..++|..+-+-+|+++||.||. |+||++|..|+++.+|+..+..+|..+..++|.+..+
T Consensus       220 f~~q~g~-------l~~~~l~yaiplalnteailhsnntrd~-dndr~agivtlailig~t~s~ily~~llf~py~lf~i  291 (359)
T KOG4581|consen  220 FAIQTGH-------LAIFPLGYAIPLALNTEAILHSNNTRDA-DNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFI  291 (359)
T ss_pred             HHHhcCc-------eeEEeehheeeeccchHHHhccCCCccc-ccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHH
Confidence            9999998       8888899999999999999999999999 9999999999999999999999999999999987665


Q ss_pred             HHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 023777          200 IGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPK  273 (277)
Q Consensus       200 ~v~~g~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~~~~~~~~~  273 (277)
                      +..  .-..|.. ++++++|.+.+.-|++++.  +.-...|.  +|+|.++.+|+++..+..++.-+-+-..||
T Consensus       292 ~~~--~~si~~~-lplltip~afqiek~frne--qa~~~lp~--qtakln~~~gi~yv~~~~~ahqlpa~~l~k  358 (359)
T KOG4581|consen  292 FAL--HCSISFA-LPLLTIPMAFQIEKQFRNE--QAFHKLPQ--QTAKLNFFFGIFYVFACCCAHQLPAFGLPK  358 (359)
T ss_pred             HHH--HHHHHHH-hHHhhchhHHhHHHHhhhH--hhhhhcch--hhhhHHHHHHHHHHHHHHHhccCCcCCCCC
Confidence            543  2233333 4799999999999999764  23233444  499999999999999999887666655555

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.84  E-value=4.7e-19  Score=164.17  Aligned_cols=107  Identities=17%  Similarity=0.189  Sum_probs=87.2

Q ss_pred             HHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCC
Q 023777           81 TCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQ  160 (277)
Q Consensus        81 ~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D  160 (277)
                      +..++.++.||+||+|+||+|++|..++..+ .+++.++|++|+++       +++..+..+  .++++.++...||+||
T Consensus       120 l~~i~~~~~YS~pP~rlk~~p~~~~~~~g~~-~~~~~~~y~~~tg~-------~~~~~l~~a--~~l~~~~~~~in~i~D  189 (282)
T PRK12875        120 LAFLVLSVEYSAPPLRFKTTPVLDSLSNGLY-ILPGVAAYALVSGS-------LPPLLAVAG--GWLWAMGMHTFSAIPD  189 (282)
T ss_pred             HHHHHHHHHHcCCCccchhccHHHHHHHHHH-HHHHHHHHHHHcCC-------CcHHHHHHH--HHHHHHHHHHHHhccC
Confidence            3367899999999999999999998763222 47778999999987       665555444  4799999999999999


Q ss_pred             CChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHH
Q 023777          161 VVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF  198 (277)
Q Consensus       161 ~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~  198 (277)
                      + |+|+++||||+|+++|+|+++++...+..++-....
T Consensus       190 i-e~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~  226 (282)
T PRK12875        190 I-EPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFA  226 (282)
T ss_pred             H-HHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHH
Confidence            9 999999999999999999999877766655554433

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.80  E-value=6.9e-18  Score=156.07  Aligned_cols=194  Identities=12%  Similarity=0.097  Sum_probs=141.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcC
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS  125 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g  125 (277)
                      ++++...+..++++|+   .  +....++..+.+++++.++++.||..   -.++++||+..++.+|. .+.++++++++
T Consensus        91 ~~~a~~~~~~l~~~~~---~--l~~~~~~~~~~~~~~~~~~~~~Y~~~---Kr~~~~~~~~~g~~~~~-~~l~~~~a~~g  161 (285)
T PRK12847         91 VKQALILLFILLLIAL---V--ILLLLNKTTIYLSFIAVILIVLYPLM---KRFFYWPQLFLGFTFNM-GILMAFAAVQN  161 (285)
T ss_pred             HHHHHHHHHHHHHHHH---H--HHHHHhHHHHHHHHHHHHHHHhcccc---ccCCcccHHHHHHHHHH-HHHHHHHHHcC
Confidence            5777777776666663   2  22345888899999999999999853   23567899999999885 56777888888


Q ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhh
Q 023777          126 TRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA  205 (277)
Q Consensus       126 ~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~  205 (277)
                      +       +++..++.+++..+++.+....|+++|+ |+|+++|++|+|+++|++++.+.+.......+++.......|.
T Consensus       162 ~-------~~~~~~~l~~~~~~w~~~~~~~~a~~D~-e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~  233 (285)
T PRK12847        162 Q-------LDIEAILLYIGCIFWTIGYDTIYAYQDK-KDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSL  233 (285)
T ss_pred             C-------CcHHHHHHHHHHHHHHHHHHHHHHhccH-hhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            7       7889999999999999999999999999 9999999999999999999999998888888887777777777


Q ss_pred             hhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023777          206 LPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA  263 (277)
Q Consensus       206 lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~  263 (277)
                      .|++.+.. .+..-......+.. +. +++++   ++ ..-|.....+.++.++++++
T Consensus       234 ~~~~y~~~-~~~~~~l~~~~~~~-~~-~~~~~---~~-~~f~~~~~~~~l~~~~~~~~  284 (285)
T PRK12847        234 HNIFYLAI-LAAAGIFYYQYKLL-DF-DNPAN---CM-YAFKANHYVGLLLFLGAVLG  284 (285)
T ss_pred             cHHHHHHH-HHHHHHHHHHHHHh-CC-CCHHH---HH-HHHHHhHHHHHHHHHHHHhC
Confidence            67665332 22222222222222 21 22322   22 13455566677666666653

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.79  E-value=2.2e-17  Score=151.78  Aligned_cols=189  Identities=18%  Similarity=0.117  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHHHHHhc
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLG  124 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~gl-GEl~v~l~~G~l~v~g~yyvq~  124 (277)
                      +++....+..+.++++. +.    ...++..+.+++++++.++.||.   ++||+++ ||+.+++.+|...+.+.++++.
T Consensus        81 ~~~a~~~~~~~~~~~~~-~~----~~l~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~  152 (279)
T PRK12884         81 RREALLLAILLFILGLI-AA----YLISPLAFLVVILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFIFGGIAVGE  152 (279)
T ss_pred             HHHHHHHHHHHHHHHHH-HH----HHHhHHHHHHHHHHHHHHHHHHH---hhccccchhHHHHHHHHHHHHHHHHHHhCC
Confidence            57787777777776642 11    12377888888899999999985   6889985 9999999999777777666543


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023777          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR  204 (277)
Q Consensus       125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g  204 (277)
                      .         +...++.+....+.+......||++|+ |+|+++|+||+|+++|+|++.+.+.......++........|
T Consensus       153 ~---------~~~~~~l~~~~~~~~~~~~~~~~~~D~-e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (279)
T PRK12884        153 L---------NEAVILLAAMAFLMTLGREIMKDIEDV-EGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFG  222 (279)
T ss_pred             C---------chHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2         236677778888888888999999999 999999999999999999999999888888887666656666


Q ss_pred             hhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHH
Q 023777          205 ALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVA  258 (277)
Q Consensus       205 ~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~i  258 (277)
                      ..+++.++..+++.+.......++.++ +++++   .+  ..+.....+.++++
T Consensus       223 ~~~~~y~~~~~~~~~~~l~~~~~~~~~-~~~~~---~~--~~~~~~~~~~~~~~  270 (279)
T PRK12884        223 IFNILYLAPVLVADLIFLYSAYSLLRS-QDRET---IR--KVRKITLTAMLLAL  270 (279)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhcC-CCHHH---HH--HHHHHHHHHHHHHH
Confidence            656554433345555555444334343 23322   22  33555555554443

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.78  E-value=9.4e-18  Score=150.07  Aligned_cols=123  Identities=25%  Similarity=0.412  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHHHHHhcC
Q 023777           47 TGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGS  125 (277)
Q Consensus        47 ~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~gl-GEl~v~l~~G~l~v~g~yyvq~g  125 (277)
                      +++...+..+.++++   .  +.+..++..+.+.+++.+.++.|| +|+++||+++ +|+.+++.+|.....+.+. +++
T Consensus        70 ~~~~~~~~~~~~l~l---~--l~~~~~~~~~~~~~~~~~~~~~Ys-~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~-~~~  142 (257)
T PF01040_consen   70 RQALIFALILLLLGL---L--LALLLGPWFLLILLLGFLLGLLYS-PPLRLKRRPLWGELVVALVFGLLILLGAYA-AGG  142 (257)
T ss_pred             HHHHHHHHHHHHHHH---H--HHHhcCchhHHHHHHHHHHHHHHh-hhhhhcceeccchhhHHHhhhHhhhhhhhh-cCC
Confidence            344445545544442   2  225677888888888999999999 8999999999 9999999999877777655 555


Q ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHH
Q 023777          126 TRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSV  184 (277)
Q Consensus       126 ~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~  184 (277)
                      .       .+...++.+.+.++...++...||+||+ |+|+++|++|+|+++|++++.+
T Consensus       143 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  143 D-------PPPPPFLLAIFFFLLIFAIMFFNDIRDI-EGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             c-------ccHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHcCCcchHHHHHHHHHHH
Confidence            4       5778899999999999999999999999 9999999999999999999998

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.73  E-value=4.5e-16  Score=143.69  Aligned_cols=196  Identities=17%  Similarity=0.129  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccc-cchHHHHHhhhhHHHHHHHHHHhc
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQ-GLGEPLCFAAFGPFATTAFYLLLG  124 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~-glGEl~v~l~~G~l~v~g~yyvq~  124 (277)
                      ++++...+..+.+.+.   .  +....++....++..+.++.+.|+.    +||+ ++|++..++.+|. ++.+++++++
T Consensus        82 ~~~a~~~~~~~~~~~~---~--~~~~l~~~~~~l~~~~~~~~~~Y~~----~Kr~~~~~~~~~g~~~~~-~~~~g~~a~~  151 (282)
T TIGR01475        82 KKEARTMIILSLALFL---S--ASYFLNPLAFILSPLVLLVLIIYPY----TKRFTFLCHYVLGSTYGL-APLAGWVAVI  151 (282)
T ss_pred             HHHHHHHHHHHHHHHH---H--HHHHHhHHHHHHHHHHHHHHHHHhh----HhccccccHHHHHHHHHH-HHHHHHHHHh
Confidence            5777777665543332   1  2233466666777778888899973    5655 6899999999885 5566677777


Q ss_pred             Cccccccccch--HHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHH
Q 023777          125 STRENLCLSIT--ATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL  202 (277)
Q Consensus       125 g~~~~~~~~~~--~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~  202 (277)
                      ++       .+  +..++.+++..+++.+..+.||++|+ |+|+++|++|+|+++|+|++.+.+.....+++........
T Consensus       152 g~-------~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~-e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~  223 (282)
T TIGR01475       152 GT-------ISFFLVAWLLGIGVGFWIAGFDLIYAIQDY-EFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGF  223 (282)
T ss_pred             CC-------ccchHHHHHHHHHHHHHHHHHHHHHHHhhH-HhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76       55  77788899999999999999999999 9999999999999999999999988877777766544443


Q ss_pred             hhh-hhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023777          203 SRA-LPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI  265 (277)
Q Consensus       203 ~g~-lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~  265 (277)
                      .+. .++..... .+..+......+..+ . +++++   +++.--..+...++++.+|++++.+
T Consensus       224 ~~~~g~~y~~~~-~~~~~~l~~~~~~~~-~-~~~~~---~~~~ff~~~~~l~~~~~~g~~~~~~  281 (282)
T TIGR01475       224 YVGNGYIALLAL-ILIGLILAYEHYIVD-P-GDQSK---IQRAFFYANGFLSITFLIGVIIDVL  281 (282)
T ss_pred             HhhCcHHHHHHH-HHHHHHHHHHHHHcC-C-CCHHH---HHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            332 22222222 233344444444332 2 22221   2222234445566777777776553

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.73  E-value=8.5e-16  Score=141.43  Aligned_cols=126  Identities=17%  Similarity=0.173  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhc
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLG  124 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~g-lGEl~v~l~~G~l~v~g~yyvq~  124 (277)
                      ++++...+..+.++|+   .  +....|+..+.++..+.+.++.||..   +|+++ +||+.++..+|..++.|.+.+  
T Consensus        81 ~~~a~~~~~~l~~~g~---~--l~~~~~~~~~~~~~~~~~~~~~Y~~~---~k~~~~lg~~~vg~~~g~~~~~g~~a~--  150 (277)
T PRK12883         81 RKAALYYSLLLFAVGL---A--LAYLINIEAFLFALGAYVLMFLYAWK---LKPLPFIGNVVVALLTGATPIYGAIAV--  150 (277)
T ss_pred             HHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHHHHHHhhc---ccCCcchhhHHHHHHHHHHHHHHHHHh--
Confidence            6777777777766553   2  22346888888888999999999974   45555 699999999998887776543  


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHH
Q 023777          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAV  190 (277)
Q Consensus       125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~  190 (277)
                      ++       +++..+.... ..+...+..+.||++|+ |+|+++|++|+|+++|++++++......
T Consensus       151 ~~-------~~~~~~~~~~-~fl~~~~~~~~~~~~D~-e~D~~~G~~Tlpv~~G~~~a~~~~~~~~  207 (277)
T PRK12883        151 GR-------IGLAGYLAIC-AFLVNVAREIMKDIEDI-EGDKAKGAKTLPIIIGKKRAAYIGAIFG  207 (277)
T ss_pred             cc-------ccHHHHHHHH-HHHHHHHHHHHhhhhhh-ccHHHcCCcCcChHhcHHHHHHHHHHHH
Confidence            44       5555444333 55666788899999999 9999999999999999999998776543

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.72  E-value=9.8e-16  Score=143.02  Aligned_cols=198  Identities=15%  Similarity=0.034  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023777           46 RTGTLVTAYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG  124 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~-~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~  124 (277)
                      +|++...+..+.++|+ +++.  +...+++..+.+|+.+.++++.|+.+|.. .+.|.+++.-++.++..++.|  ++++
T Consensus        96 ~~~a~~~~i~l~~i~~~l~~~--l~~~~~~~~~~l~~~~~~~~~~Y~~~kr~-~~~p~~~l~G~~~~~~~~~~g--~~~~  170 (297)
T PRK12871         96 SKNAFALFILLAAVTSALILT--LPYPNSLYVFVIMLYSYGIEAFYQVKKRN-QKYPVAQLLGRTDFTLFPAAG--YLCY  170 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccccc-ccccHHHHHHHHHHHHHHHHH--HHHh
Confidence            7889998888888885 4444  44556778889999999999999988854 666777755445555533333  5567


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023777          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR  204 (277)
Q Consensus       125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g  204 (277)
                      ++       +++..++.+++.++++.+...+||++|+ |+|+++|+||+|+++|++++++....+..+..+..+.. ..+
T Consensus       171 g~-------~~~~~~ll~~~~~~w~~~~~~~~a~~D~-e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~~~-~~~  241 (297)
T PRK12871        171 GQ-------PDMTALLYMVFFYPWTMAHLGLNDFIDL-ENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAIFF-LRE  241 (297)
T ss_pred             CC-------CcHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            76       7788888999999999999999999999 99999999999999999999987776665555443322 223


Q ss_pred             hhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023777          205 ALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA  263 (277)
Q Consensus       205 ~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~  263 (277)
                      ..+.......+...|+.....+..+.  +++++-+    ..-+.+..+.+.+...+++.
T Consensus       242 ~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~f~~~~~~~~~~~~~~~~~  294 (297)
T PRK12871        242 LGPIALYGFLAGFVLLAGANLYLWKE--KSQDAGM----KILPLYHASLVIYAVSIILD  294 (297)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHH----HHHHHHHHHHHHHHHHHHhh
Confidence            33221111114455666666655543  3344333    15566777777777666653

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.71  E-value=2.2e-15  Score=139.21  Aligned_cols=132  Identities=16%  Similarity=0.091  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHhhchHH-HHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHh
Q 023777           46 RTGTLVTAYLLLVLGF-IGLTWASVEAGNLR-AIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLL  123 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~-~Gl~~~l~~~~~~~-il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq  123 (277)
                      ++++...+..++++|+ ++..     ..++. ....+....+.++.||.   ++||+++++..++...|.+++.++++++
T Consensus        82 ~~~a~~~~~~~~~~~~~l~~~-----~l~~~~~~~~~~~~~~~~~~Yt~---~lKr~~~~~~~v~~~~g~~~~l~g~~a~  153 (279)
T PRK12869         82 RKEALAVGSALSALGTALGFL-----LLGPLTALFIALGWFFYAVVYTI---WLKPRTWLNIVIGGFAGNAAALAGYASG  153 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhCc---ccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            6888888888877775 3222     12333 23334445567889994   7999999999999999999999999999


Q ss_pred             cCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHH
Q 023777          124 GSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMIL  193 (277)
Q Consensus       124 ~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~  193 (277)
                      +++       +++..++.+++.++++.+..++|+++|+ |+|+++|+||+|++.|+|++.+.......+.
T Consensus       154 ~g~-------~~~~~~ll~~~~~~w~~~~~~~l~~~d~-edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~  215 (279)
T PRK12869        154 TGS-------LDLEAVLLSFLIYLWTPGHIWSLALKYR-EDYRRAGVPMLPAVVGEKTSVRAISISNALM  215 (279)
T ss_pred             hCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHhH-HhHHHcCCeecceeecHHHHHHHHHHHHHHH
Confidence            998       8899999999999999999999999999 9999999999999999999998776655443

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.70  E-value=2.2e-15  Score=139.81  Aligned_cols=197  Identities=16%  Similarity=0.106  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcC
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS  125 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g  125 (277)
                      ++++...+..++++++   .  +....++....++.++++..+.|+   ..-.+++++++..+++++. .++++++++++
T Consensus        85 ~~~a~~~~~~~~~~~l---~--l~~~l~~~~~~l~~~~~~~~~~Y~---~~Kr~t~~~~~~lg~~~~~-~~l~g~~a~~g  155 (284)
T PRK12888         85 VRTAWTGALVALAVFL---G--AAALLNPLCLALAPLAVAPLVVYP---YAKRFTNFPHAILGLAQAV-GPVGAWIAVTG  155 (284)
T ss_pred             HHHHHHHHHHHHHHHH---H--HHHHHhHHHHHHHHHHHHHHHHHH---HhhcccchhhHHHHHHHHH-HHHHHHHHHcC
Confidence            5677666655544432   2  223446666667777777778885   2335567899999988764 45677899988


Q ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh-
Q 023777          126 TRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR-  204 (277)
Q Consensus       126 ~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g-  204 (277)
                      +       +++..++.+++.++++......|+++|+ |+|+++|+||+|+++|+|++.+.+..+....++......... 
T Consensus       156 ~-------~~~~~~ll~~~~~~w~~~~~~i~a~~D~-e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~  227 (284)
T PRK12888        156 T-------WSWPAVLLGLAVGLWIGGFDLIYACQDA-EVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVG  227 (284)
T ss_pred             C-------CCHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            7       7889999999999999999999999999 999999999999999999999877777666665544443333 


Q ss_pred             hhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023777          205 ALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI  265 (277)
Q Consensus       205 ~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~  265 (277)
                      ..+++. +....+......-.+.. + .+++++...   .--+.+...|+++.+|++++.+
T Consensus       228 ~~~~y~-~~~~~~~~~l~~~~~~~-~-~~~~~~~~~---~ff~~n~~ig~~~~~~~~~~~~  282 (284)
T PRK12888        228 FGALWW-IGLAITAGAFAYEHAIV-S-PTDLSRVNR---AFFTANGFVGIALFGFALLDLL  282 (284)
T ss_pred             CcHHHH-HHHHHHHHHHHHHHHHc-C-ccCHHHHHH---HHHHHhhHHHHHHHHHHHHHHH
Confidence            222222 22123333333322222 2 234443331   1223445567878888877664

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.69  E-value=2.6e-15  Score=138.48  Aligned_cols=165  Identities=13%  Similarity=0.112  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhc
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLG  124 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~g-lGEl~v~l~~G~l~v~g~yyvq~  124 (277)
                      ++++...+..+.++|+. +.    ...++....+++++.+..+.||.   ++||++ +||+.++..+|..++.|.+++++
T Consensus        81 ~~~a~~~~~~l~~~~~~-l~----~~l~~~~~~l~~~~~~~~~~Ys~---~lKr~~~~~~~~vg~~~G~~~~~g~~~~~~  152 (279)
T PRK09573         81 LKEAKIFSITLFIVGLI-LS----IFINIYAFLIALLNSILLYLYAK---DLKKTGLIGNLIVAYLTGLSFIFGGLAVFN  152 (279)
T ss_pred             HHHHHHHHHHHHHHHHH-HH----HHHhHHHHHHHHHHHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHHHHHHHcc
Confidence            68888888888777752 21    22467788888999989999985   578777 59999999999998888877764


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023777          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR  204 (277)
Q Consensus       125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g  204 (277)
                      ..          ..+...+...+.+.+....||++|+ |+|+++|++|+|+++|+|++.+..........+........+
T Consensus       153 ~~----------~~~~l~~~~f~~~~~~~~~~~~~D~-~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~  221 (279)
T PRK09573        153 VL----------RIIILFLCAFFSTWSREIVKDIEDI-EGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLG  221 (279)
T ss_pred             ch----------HHHHHHHHHHHHHHHHHHHhhhhhh-hhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21          2233444555667788889999999 999999999999999999999988766555555443333334


Q ss_pred             hhhH-HHHHHHHhHHHHHHHHHHHHH
Q 023777          205 ALPL-SCIFLCAMTSPIGKLVVSYVE  229 (277)
Q Consensus       205 ~lP~-~~ll~~lltlPla~~~~~~~~  229 (277)
                      ...+ +......+..+......+..+
T Consensus       222 ~~~~~y~~~~~~~~~~~l~~~~~~~~  247 (279)
T PRK09573        222 IFGIYYLIVVIICDILFIIAMLILLK  247 (279)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence            2222 222222344555555555554

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.69  E-value=7.8e-15  Score=135.33  Aligned_cols=130  Identities=14%  Similarity=0.017  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH-heeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVIC-GYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG  124 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~-~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~  124 (277)
                      +|++...+..++++|+.-    +....++....++.+++++ ++.||.   ++||+++++..++...|.++++++|++++
T Consensus        81 ~~~a~~~~~~~~~~g~~i----l~~~~~~~~~~l~~~~~~~~~~~Yt~---~lKr~~~~~~~v~~~~g~~~~l~g~~a~~  153 (280)
T TIGR01473        81 PREALAFGLLLGVLGVAI----LAAFVNPLAALLGLFGIFFYVIVYTI---WLKRRTPQNTVIGGFAGAVPPLIGWAAVT  153 (280)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHhhcCh---hhccCCchhHHHHHHHHHHHHHHHHHHhc
Confidence            688888888887777431    2233567777788888866 899995   58999999999988999999999999999


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHH
Q 023777          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAV  190 (277)
Q Consensus       125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~  190 (277)
                      ++       +++..++.+++..+....-......+|+ |+|+++|+||+|+++|+|++.+......
T Consensus       154 g~-------~~~~~~~l~~~~~~w~~~~~~~~a~~~~-~dd~~~G~~tl~v~~G~~~a~~~~~~~~  211 (280)
T TIGR01473       154 GS-------ISLGAWLLFAIIFLWQPPHFWALALKYK-DDYRAAGIPMLPVVKGERITKRQIALYT  211 (280)
T ss_pred             CC-------CCHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHCCCccCCcccCHHHHHHHHHHHH
Confidence            88       7888888888888887776666678999 9999999999999999999887554433

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.67  E-value=7e-15  Score=135.99  Aligned_cols=194  Identities=18%  Similarity=0.123  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcC
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS  125 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g  125 (277)
                      ++++...+..++++++. +.    ...++....++.++.+..+.|+   +..+++++|++..++.+|+.. ..+++++++
T Consensus        88 ~~~a~~~~~~l~~~~~~-l~----~~l~~~~~~l~~~~~~~~~~Y~---~~Kr~~~~~~~~~g~~~g~~~-~~g~~a~~~  158 (282)
T PRK12848         88 EKEALALFVVLVLVAFL-LV----LTLNTLTIWLSVAALALAWIYP---FMKRYTHLPQVVLGAAFGWGI-PMAFAAVQG  158 (282)
T ss_pred             HHHHHHHHHHHHHHHHH-HH----HHHhHHHHHHHHHHHHHHHHHH---hHHhcCcccHHHHHHHHHHHH-HHHHHHHhC
Confidence            68888888888777742 22    2346777788888888999994   456677899999899988654 557888888


Q ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhh
Q 023777          126 TRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA  205 (277)
Q Consensus       126 ~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~  205 (277)
                      +       +++..++.+++..+.+....+.|+++|+ |+|+++|++|+|+++|+|++.+..........+........+.
T Consensus       159 ~-------~~~~~~~l~~~~~~w~~~~~~~~a~~D~-e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (282)
T PRK12848        159 S-------VPLEAWLLFLANILWTVAYDTQYAMVDR-DDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWAGWLLGL  230 (282)
T ss_pred             C-------CcHHHHHHHHHHHHHHHHHHHHHHhccH-hhHHHcCCccccHHhccccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            7       7888899999999999999999999999 9999999999999999999887654333333333333333344


Q ss_pred             hhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023777          206 LPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA  263 (277)
Q Consensus       206 lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~  263 (277)
                      .+++.... ...........+.. +. +++++-. .   .-+.+...+.++.+|++++
T Consensus       231 ~~~y~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~-~---~F~~n~~~g~~l~~~~~~~  281 (282)
T PRK12848        231 GWAYYWGL-LVAAALFVYQQKLI-RD-REREACF-K---AFLNNNWVGLVLFAGIAAS  281 (282)
T ss_pred             cHHHHHHH-HHHHHHHHHHHHHc-CC-CCHHHHH-H---HHHhCcHHHHHHHHHHHHh
Confidence            44443221 22222222222222 11 2333211 1   2244555777777776653

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.66  E-value=2e-14  Score=132.97  Aligned_cols=195  Identities=14%  Similarity=0.066  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcC
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS  125 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g  125 (277)
                      ++++...+..+.++|+   .  +....|+....++.+++++++.||.   .-++++++++..++.++..++.| ++++++
T Consensus        86 ~~~a~~~~~~~~~~~~---~--l~~~l~~~~~~l~~~~~~~~~~Y~~---~Kr~~~~~~~~~g~~~~~~~~~g-~~a~~g  156 (281)
T TIGR01474        86 VRQAILFLLVQLLVAL---G--VLLQLNPLTILLGVASLALVATYPF---MKRITYWPQLVLGLAFGWGALMG-WAAVTG  156 (281)
T ss_pred             HHHHHHHHHHHHHHHH---H--HHHHhhHHHHHHHHHHHHHHHHhch---hcccccccHHHHHHHHHHHHHHH-HHHHcC
Confidence            5777766666655554   2  2234678888899999999999984   22346789999998888666555 778888


Q ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhh
Q 023777          126 TRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA  205 (277)
Q Consensus       126 ~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~  205 (277)
                      +       +++..++..+...+++......|+++|+ |+|+++|+||+|+++|+++++...........+........+.
T Consensus       157 ~-------~~~~~~ll~~~~~lw~~~~~~~~a~~D~-e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (281)
T TIGR01474       157 D-------LSTAAWVLYLANILWTLGYDTIYAMQDK-EDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAGL  228 (281)
T ss_pred             C-------CcHHHHHHHHHHHHHHHHHHHHHHHhhH-HhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            7       7788777888889999999999999999 9999999999999999998766544444333333333333344


Q ss_pred             hhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023777          206 LPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR  264 (277)
Q Consensus       206 lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~  264 (277)
                      .+++.+........+ ......+ +. +++++   ++ ..-|....++.++.++++++.
T Consensus       229 ~~~y~~~~~~~~~~~-~~~~~~~-~~-~~~~~---~~-~~F~~~~~~~~~l~~~~~~~~  280 (281)
T TIGR01474       229 GPVYYLGLAAAALLL-IRQIATL-DI-RDPEN---CL-KLFKANNYVGLLLFAGIALGW  280 (281)
T ss_pred             cHHHHHHHHHHHHHH-HHHHHHh-CC-CCHHH---HH-HHHHHhhHHHHHHHHHHHHHh
Confidence            444432221222222 2222233 22 22322   21 244555666666666666543

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PLN02878 homogentisate phytyltransferase

Probab=99.64  E-value=2.7e-14  Score=131.81  Aligned_cols=151  Identities=19%  Similarity=0.253  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeecc--CCcccccccchHHHHHhhhhHHHHHHHHHHh
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQC--PPFRLSYQGLGEPLCFAAFGPFATTAFYLLL  123 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~--gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq  123 (277)
                      +++....+..++++|+ .+.  . ..+.++++.....+.++++.||.  ||+|+|+.|+--..++++-+...+-.++|..
T Consensus        67 ~~~a~~~~~~~~~lg~-~la--~-~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h  142 (280)
T PLN02878         67 VATGVAIVTSFAIMSF-GMG--W-IVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLH  142 (280)
T ss_pred             HHHHHHHHHHHHHHHH-HHH--H-HHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHh
Confidence            5777666666666664 111  1 22334566666677789999997  9999999998666666555555543344432


Q ss_pred             cCccc-cccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHH
Q 023777          124 GSTRE-NLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIG  201 (277)
Q Consensus       124 ~g~~~-~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v  201 (277)
                      ..+.. .....++...+...+-..+...++.+.||+||+ |+||+.|++|+|+++|++++.++...+..++|...+...
T Consensus       143 ~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~Di-eGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g  220 (280)
T PLN02878        143 MQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDV-EGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVG  220 (280)
T ss_pred             HHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhCcCc-hhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            11100 001113445555555777888899999999999 999999999999999999999999999999998544433

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.63  E-value=3.4e-14  Score=130.71  Aligned_cols=134  Identities=16%  Similarity=0.096  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhc
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLG  124 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~g-lGEl~v~l~~G~l~v~g~yyvq~  124 (277)
                      ++++...+..+.++|+. +.    ...++....++.++.+.++.||.   ++|+++ +||+.++...|.....|..+...
T Consensus        82 ~~~a~~~~~~l~~~g~~-~~----~~l~~~~~~~~~~~~~~~~~Yt~---~lK~~~~~g~~~vg~~~g~~~~~g~~~~~~  153 (276)
T PRK12882         82 PRGALAFSILLFAAGVA-LA----FLLPPLCLAIALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGSTFLFGGAAVGT  153 (276)
T ss_pred             HHHHHHHHHHHHHHHHH-HH----HHHhHHHHHHHHHHHHHHHHHHH---HHhcccchhHHHHHHHHHHHHHHHHHHhcc
Confidence            68888888888777752 11    23467778888889889999985   789886 69999988888776666555432


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHH
Q 023777          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSL  196 (277)
Q Consensus       125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~  196 (277)
                      .        .....+..+++..+.+.+....||++|+ |+|+++|++|+|+++|+|++.++.........+.
T Consensus       154 ~--------~~~~~~~l~~~~fl~~~~~~~~~~~~D~-e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~  216 (276)
T PRK12882        154 E--------GLLALLVLFALAALATLAREIIKDVEDI-EGDRAEGARTLPILIGVRKALYVAAAFLLVAVAA  216 (276)
T ss_pred             c--------chHHHHHHHHHHHHHHHHHHHHhhhhhh-hhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHH
Confidence            2        2344566677778888899999999999 9999999999999999999998776655444433

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.63  E-value=4.5e-14  Score=132.76  Aligned_cols=193  Identities=15%  Similarity=0.040  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccc-ccchHHHHHhhhhHHHHHHHHHHhc
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSY-QGLGEPLCFAAFGPFATTAFYLLLG  124 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y-~glGEl~v~l~~G~l~v~g~yyvq~  124 (277)
                      ++++...+..+.++|   +.+  ....|+..+.+++++++.++.||.    .|| ++++....++.++...+.| |++++
T Consensus       118 ~~~a~~~~~~~~~~g---~~l--~~~~~~~~~~l~~~~~~~~~~Y~~----~KR~t~~~~~~~Gl~~~~~~l~g-~~a~~  187 (314)
T PRK12878        118 RKQAKVFMVLQALVG---LAV--LLQFNWFAIALGIASLAIVAAYPF----MKRITWWPQFFLGLAFSWGALMG-WAAHF  187 (314)
T ss_pred             HHHHHHHHHHHHHHH---HHH--HHHHhHHHHHHHHHHHHHHHHHHH----HHhcCCcchHHHHHHHHHHHHHH-HHHHh
Confidence            466765555554444   332  234588889999999999999974    443 3555555566655444444 89999


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023777          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR  204 (277)
Q Consensus       125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g  204 (277)
                      |+       +++..++..+...++....-..+|++|+ |+|+++|++|+|+++|++++++.+........++.......+
T Consensus       188 g~-------~~~~~~~l~~~~~~w~~~~~~~~a~~D~-e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~l~~~~~~  259 (314)
T PRK12878        188 GS-------LSLAAVLLYAGSIAWTIGYDTIYAHQDK-EDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLMGLAFWLAG  259 (314)
T ss_pred             CC-------CchHHHHHHHHHHHHHHHHHHHHHhhhH-hhHHHcCCcccchHhchhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88       7888787777888888888888999999 999999999999999999999988665555544444444444


Q ss_pred             hhhHHHHHHHHhHHHHHHHHHHHHHhh-ccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023777          205 ALPLSCIFLCAMTSPIGKLVVSYVEEN-HKDKGKIFMAKYYCVRFHALFGAALVAGLITAR  264 (277)
Q Consensus       205 ~lP~~~ll~~lltlPla~~~~~~~~~~-~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~  264 (277)
                       .+++.++. ++..+.. ...+ ..+. .+++++   + +..-+.+..++.++.++++++.
T Consensus       260 -~~~~~~~~-~~~~~~~-l~~~-~~~~~~~~~~~---~-~~~F~~n~~~~~ll~~~l~~~~  312 (314)
T PRK12878        260 -VPLLALLG-LLAAAAH-LAWQ-IARLDIDDPDQ---C-LRLFKSNRDAGLLIFLGLVVGG  312 (314)
T ss_pred             -CcHHHHHH-HHHHHHH-HHHH-HHHcccCChHH---H-HHHHHHhHHHHHHHHHHHHHHh
Confidence             35554443 4555543 2222 3221 122221   2 1244566677777777777654

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.63  E-value=7.8e-14  Score=129.85  Aligned_cols=123  Identities=18%  Similarity=0.176  Sum_probs=99.3

Q ss_pred             hhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHH
Q 023777           70 EAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTT  149 (277)
Q Consensus        70 ~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g~~~~~~~~~~~~~ll~slp~gll~  149 (277)
                      ...|+....++.++.+....||.   .-+++++|++..+++++ .++++++++++++       +++..++.+++.++++
T Consensus       107 ~~~~~~~~~l~~~~~~~~~~Y~~---~Kr~t~~~~~~~g~~~~-~~~l~g~~a~~g~-------~~~~~~ll~~~~~lw~  175 (291)
T PRK12886        107 WFLNPLCLYLSPPALFFLLLYSY---CKRFTALAHVVLGFCLA-LAPLGAWIAIRGT-------IELPAILLGLAVLFWV  175 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh---hhccccccHHHHHHHHH-HHHHHHHHHHcCC-------CcHHHHHHHHHHHHHH
Confidence            45677777777777777888984   23446789999888866 4567889999887       7888899999999999


Q ss_pred             HHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023777          150 SLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR  204 (277)
Q Consensus       150 ~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g  204 (277)
                      ...-+.++++|+ |+|+++|++|+|+++|++++++.......+.+.........+
T Consensus       176 ~~~~~~~a~~D~-e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (291)
T PRK12886        176 AGFDILYALQDL-EFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISA  229 (291)
T ss_pred             HHHHHHHHhccH-HhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            998888999999 999999999999999999999988777666766555544444

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.62  E-value=3.9e-14  Score=131.75  Aligned_cols=198  Identities=14%  Similarity=-0.016  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcC
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS  125 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g  125 (277)
                      ++++...+..++++++. +    ...-++....++..+.+..+.||.   .-++++++++..++.+|. .+.++++++++
T Consensus        92 ~~~a~~~~~~~~~~~~~-l----~~~l~~~~~~l~~~~~~~~~~Y~~---~KR~t~~~~~~lg~~~~~-~~l~g~~a~~g  162 (290)
T PRK12870         92 VKVGIVIAIVALLCAAG-L----AFFLNPLSFWLCVAAVPVIFLYPL---AKRVFPVPQLVLAIAWGF-AVLISWSAVTG  162 (290)
T ss_pred             HHHHHHHHHHHHHHHHH-H----HHHHhHHHHHHHHHHHHHHHHhhh---hhhccccceeeehHHHHh-HHHHHHHHHcC
Confidence            57777777766666641 1    122356666778888888999974   455667889988889884 67888898988


Q ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhh
Q 023777          126 TRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA  205 (277)
Q Consensus       126 ~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~  205 (277)
                      +       +++..++.+++..+++...-..|+++|+ |+|+++|.+|+|+++|++++.++.........++.......|.
T Consensus       163 ~-------~~~~~~~l~~~~~lw~~~~d~~~a~~D~-e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~  234 (290)
T PRK12870        163 H-------LDLGTWLLWAATVFWTLGFDTVYAMSDR-EDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLAILGVLLEL  234 (290)
T ss_pred             C-------CCHHHHHHHHHHHHHHHHHHHHHHhhhH-hhHHHCCCcchhHHhccccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            7       7888888999999999999999999999 9999999999999999999887655333333333333334454


Q ss_pred             hhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023777          206 LPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI  265 (277)
Q Consensus       206 lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~  265 (277)
                      .|++... ..+..-........++++  ++++.. + +..-+.+...+.++.++++++.+
T Consensus       235 ~~~y~~~-~~~~~~~l~~~~~~~~~~--~~~~~~-~-~~~F~~n~~~g~~~~~~~~~~~~  289 (290)
T PRK12870        235 HLPFWIG-LAIAAVLWARQYRRLRQA--NLPPLA-Y-GQLFLQNVWIGFLLLAGMILGSL  289 (290)
T ss_pred             cHHHHHH-HHHHHHHHHHHHHHhccc--CCChHH-H-HHHHHHhhHHHHHHHHHHHHHhh
Confidence            4554321 122222223333333322  122211 1 12446666778888888777654

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.62  E-value=6.4e-14  Score=130.32  Aligned_cols=188  Identities=14%  Similarity=0.025  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023777           46 RTGTLVTAYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG  124 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~-~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~  124 (277)
                      +++.+.....+.+.++ +|++  +....++....+..++.++++.||.||+|+|+||+.|-.+-..+|.-...  ..+..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~--la~~l~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~~~~g~p~~~--~~~~~  166 (292)
T PRK13595         91 PGEVRPLLRAVLLLNAPFLLY--LALLLPPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSNAAYALPLAL--PALAL  166 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHHHHHHHHHHH--HHHHc
Confidence            5777776666666664 4555  55667788888888899999999999999999999987666666653332  23344


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023777          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR  204 (277)
Q Consensus       125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g  204 (277)
                      |+      +..+..+   +...+...+.-..-.+.|+ |+||+.|.||+|+++|+|++.++-..+..++-+....     
T Consensus       167 g~------~~~~~~l---~a~~~w~~g~dii~ai~Di-egDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~-----  231 (292)
T PRK13595        167 GA------PVPWPPL---LALMAWSVGKHAFDAAQDI-PADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWP-----  231 (292)
T ss_pred             CC------cchHHHH---HHHHHHHHHHHHHHhccCh-HhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHH-----
Confidence            43      1233333   2334556788888899999 9999999999999999999998766655554433222     


Q ss_pred             hhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHH
Q 023777          205 ALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALV  257 (277)
Q Consensus       205 ~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~  257 (277)
                       .++...+  .+.+|-.....+ +.+. +++++..+.-+.-.-...+.|.+.+
T Consensus       232 -~~~~~~~--~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~  279 (292)
T PRK13595        232 -VSRLTAL--ALWLICGGMALA-LWRR-PTPETAHRLYPLSIVTPWIVGTVAG  279 (292)
T ss_pred             -hcchHHH--HHHHHHHHHHHH-HhcC-CCHHHHhccchHHHHHhHHHHHHHH
Confidence             2332211  244454454444 4333 4455544444444445555554433

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.59  E-value=2.7e-13  Score=126.32  Aligned_cols=196  Identities=12%  Similarity=-0.008  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccc-cccchHHHHHhhhhHHHHHHHHHHhc
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLS-YQGLGEPLCFAAFGPFATTAFYLLLG  124 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~-y~glGEl~v~l~~G~l~v~g~yyvq~  124 (277)
                      ++++...+..+.++++...     ...++....+++.++.....||.    .| ++++|++..++.+|..++.|...+ +
T Consensus        93 ~~~a~~~~~~~~~~~~~~~-----~~~n~~~~~l~~~~~~~~~~Y~~----~KR~t~~~~~~~g~~~~~~~l~G~~av-~  162 (291)
T PRK12874         93 VKSMVLFIVLNALIFIGVS-----YFINPLAFKLSFPFLIVLGGYSY----FKRFSSLAHLVLGLSLGLAPIAGVVAV-L  162 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHhh----hcccccccHHHHHHHHHHHHHHHHHHH-c
Confidence            6777777777765543222     22344444444555556777874    33 457899999999887766665454 6


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023777          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR  204 (277)
Q Consensus       125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g  204 (277)
                      |+       +++..++.+++..+++......|+++|+ |+|+++|++|+|+++|++++.+........+.+.........
T Consensus       163 g~-------~~~~~~~l~~~~~~w~~~~~~~~a~~D~-~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (291)
T PRK12874        163 GE-------IPLWSVFLALGVMFWVAGFDLLYSLQDM-EFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCA  234 (291)
T ss_pred             CC-------CcHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66       6777788899999999999999999999 999999999999999999998876555544443333222211


Q ss_pred             hhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023777          205 ALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI  265 (277)
Q Consensus       205 ~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~  265 (277)
                      ...++..+...+..-......+..+ + +++ + . . +..-......++++.++++++++
T Consensus       235 ~~~~~~~~~~~~~~~~l~~~~~~~~-~-~~~-~-~-~-~~ff~sn~~l~~l~~~~~~~~~~  289 (291)
T PRK12874        235 HLGLFAYLGVIVSALILLYEHYLVR-K-DFK-K-I-D-KAFFTLNGYLGIVFFIFIVLDVL  289 (291)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhc-C-CCh-H-H-H-HHHHHHHHHHHHHHHHHHHHHHh
Confidence            1222222221233333333333332 2 222 2 1 1 11234445566777777766654

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.58  E-value=5.1e-13  Score=124.47  Aligned_cols=129  Identities=16%  Similarity=0.073  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH-HheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVI-CGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG  124 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil-~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~  124 (277)
                      ++++...+..+.++|+....    ...++....++.++++ ..+.||.   ++||++.|+..++...|..+++.++++++
T Consensus        90 ~~~a~~~~~~l~~~g~~l~~----~l~~~~~~~l~~~~~~~~~~~Ys~---~lKr~~~~~~~v~~~~g~~~~l~g~~a~~  162 (296)
T PRK04375         90 PREALIFGLVLGVLGFLLLG----LFVNPLAAWLTLAGIFFYVVVYTL---WLKRRTPQNIVIGGAAGAMPPLIGWAAVT  162 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHhcc---chhcCCccchHHHHHHHHhHHHHHHHHhC
Confidence            68888888777777752211    1123322233333332 3557874   79999999999888888888888999998


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHH
Q 023777          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWA  189 (277)
Q Consensus       125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l  189 (277)
                      ++       +++..++.+++..+....-.++++++|+ |+|+++|.+|+|+++|++++++.....
T Consensus       163 g~-------~~~~~~~l~~~~~lw~~~~~~~~~~~d~-~D~~~~G~~tlpv~~G~~~~~~~~~~~  219 (296)
T PRK04375        163 GS-------LSWEALILFLIIFLWTPPHFWALAIFRK-DDYAAAGIPMLPVVKGIRVTKRQILLY  219 (296)
T ss_pred             CC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHcCCCccceeeCHHHHHHHHHHH
Confidence            87       7888889999999999999999999999 999999999999999999988755443

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.34  E-value=1.5e-10  Score=108.37  Aligned_cols=202  Identities=15%  Similarity=0.041  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcC
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS  125 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g  125 (277)
                      ++++...+..+++.+.   .  +....++....++..+.+..+.|+.   .-+++++|++..++.+|..++.|. +..+|
T Consensus        95 ~~~A~~~~~~~~~~~~---~--~~~~ln~~~~~l~~~~~~~~~~Y~~---~KR~t~~~~~~lg~~~~~~~~~G~-~a~~g  165 (300)
T PRK13106         95 ISEAKALITAGLILFF---A--SAYLVNRWALLLSPIVALIAMSYPY---MKRYTAFANYHLASIQGLAVFSGA-VAVLG  165 (300)
T ss_pred             HHHHHHHHHHHHHHHH---H--HHHHHhHHHHHHHHHHHHHHHHHhH---HhcCCcchHHHHHHHHHHHHHHHH-HHHcC
Confidence            4666555433333222   1  1123355445555556666777863   234457899999999997655554 55555


Q ss_pred             ccccc-cccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHH-h
Q 023777          126 TRENL-CLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL-S  203 (277)
Q Consensus       126 ~~~~~-~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~-~  203 (277)
                      ..... ...++...++..+-..+++...-..|+++|+ |+|++.|.||+|+++| |++.+....+..++-.+...... .
T Consensus       166 ~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~-e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~  243 (300)
T PRK13106        166 LYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDA-EFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYY  243 (300)
T ss_pred             CcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccch-hhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            41100 0001122222222333444444466999999 9999999999999999 88888777666666555444333 2


Q ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023777          204 RALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILV  267 (277)
Q Consensus       204 g~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~~~  267 (277)
                      +.-+++.... ..+.-....-.+...+   + ++.. .   .-+.+...|+++.+|++++.+..
T Consensus       244 ~lg~~y~~~~-~~~~~~l~~~~~~~~~---~-~~~~-~---~F~~n~~ig~~~~~~~~~~~~~~  298 (300)
T PRK13106        244 GLGPIAIAAT-ILHGLIMAYAYYLASK---K-GDFG-R---AFYYNIYSSIVLGLGIIIDVLLG  298 (300)
T ss_pred             CCcHHHHHHH-HHHHHHHHHHHHHhCC---c-hHHH-H---HHHHccHHHHHHHHHHHHHHHHc
Confidence            2333332111 1111222222222221   1 2222 1   22555667888888888877654

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.26  E-value=1.9e-09  Score=101.26  Aligned_cols=125  Identities=16%  Similarity=0.075  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH-HheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVI-CGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG  124 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil-~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~  124 (277)
                      ++++...+..+..+|...+.    ...++....++.++.+ ..+.||   .++||++..+..++-..|.+++++++++++
T Consensus        93 ~~~A~~~~~~l~~~g~~ll~----~~~n~~~~~l~~~~~~~~~~~Yt---~~lKr~t~~~~~vgg~~ga~p~l~G~~a~~  165 (306)
T PRK13362         93 LGEALGFGLALGVAGFGLLA----AFTNPLAALFAAFGYVVYVGVYS---LYLKRNSVYGTLVGSLSGAMPPVVGYCAVT  165 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHh---HHHhccCcHhHHHHHHHHHHHHHHHHHHHc
Confidence            68888888877777752111    1224443334444443 366888   379999998877776777888999999999


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHH
Q 023777          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVV  185 (277)
Q Consensus       125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~l  185 (277)
                      |+       +++..++......++...--.+-.+.|+ |+|+++|.+|+|++.|++++++.
T Consensus       166 g~-------~~~~~~~l~~~~~~W~~~h~~~~ai~~~-~Dy~~aG~~~lpv~~G~~~t~~~  218 (306)
T PRK13362        166 GQ-------FDAGALILLLMFSLWQMPHSYAIAIFRF-NDYAAAGIPVLPVARGIAKTKLH  218 (306)
T ss_pred             CC-------CcHHHHHHHHHHHHHHHHHHHHHHHHhH-hhHHHCCCeeeceecChHHHHHH
Confidence            88       7888888888888888887777889998 99999999999999999988863

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.25  E-value=1.3e-09  Score=101.03  Aligned_cols=144  Identities=24%  Similarity=0.172  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhc
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLG  124 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~g-lGEl~v~l~~G~l~v~g~yyvq~  124 (277)
                      +|+.......++++++.     +.+.-++....+...+.++++.|   | .+||.+ ++....+..+|.....|. .+..
T Consensus        93 ~~~a~~~~~~~~~~~~~-----~a~~l~~~~~~l~~~~~~l~~~Y---~-~~Kr~~~~~~~~lg~~~~~~~~~g~-~a~~  162 (289)
T COG0382          93 VKEALLLAILLLLLGLA-----LALLLNPLAFLLSLAALVLALAY---P-FLKRFTFLPQLVLGLAFGLGALAGA-AAVG  162 (289)
T ss_pred             HHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHH---H-HhhcCCchHHHHHHHHHHHHHHHHH-HHHh
Confidence            46777777777666642     22334555577888888899999   4 677765 688888999986666554 4444


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023777          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR  204 (277)
Q Consensus       125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g  204 (277)
                      ++       .+...++..+-..+.+.+.-..++++|+ |.||++|.+|+|+.+|++++..+-.......-+...+....+
T Consensus       163 ~~-------~~~~~~~l~~~~~l~~~~~~~i~~~~D~-e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~  234 (289)
T COG0382         163 GS-------LPLLAWLLLLAAILWTLGYDIIYAIQDI-EGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAG  234 (289)
T ss_pred             Cc-------cchHHHHHHHHHHHHHHHHHHHHhccCc-cchHhcCCcchHHHhCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44       5677788888899999999999999999 999999999999999999999887776633333334444444


Q ss_pred             hhh
Q 023777          205 ALP  207 (277)
Q Consensus       205 ~lP  207 (277)
                      ..+
T Consensus       235 ~~~  237 (289)
T COG0382         235 LLG  237 (289)
T ss_pred             hch
Confidence            443

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.19  E-value=3.5e-09  Score=98.68  Aligned_cols=195  Identities=14%  Similarity=0.014  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccc-cchHHHHHhhhhHHHHHHHHHHhc
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQ-GLGEPLCFAAFGPFATTAFYLLLG  124 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~-glGEl~v~l~~G~l~v~g~yyvq~  124 (277)
                      ++++...+..+.++++ ++.    ..-+.....++.++.+..+.||.    .||+ +++++..++.++..+ ..++.+++
T Consensus        91 ~~~A~~~~~~~~~~~~-~~~----~~l~~~~~~l~~~~~~~~~~Y~~----~KR~t~~~~~~lg~~~~~~~-l~g~~av~  160 (289)
T PLN02809         91 PFQGVGFLGAQLLLGL-GIL----LQLNNYSRILGASSLLLVFTYPL----MKRFTFWPQAFLGLTFNWGA-LLGWAAVK  160 (289)
T ss_pred             HHHHHHHHHHHHHHHH-HHH----HHHhHHHHHHHHHHHHHHHHHhH----HHhcCcchHHHHHHHHHHHH-HHHHHHHh
Confidence            5677666666555553 222    22355677788888888999973    5555 589988888877554 44466667


Q ss_pred             CccccccccchHHHHH-HHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHH-H
Q 023777          125 STRENLCLSITATVLS-ASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIG-L  202 (277)
Q Consensus       125 g~~~~~~~~~~~~~ll-~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v-~  202 (277)
                      ++       .++...+ ......+++..--..-.+.|+ |+|+++|.+|+|+++|++.+.++. .+..+++..+.... .
T Consensus       161 g~-------~~~~~~~~l~~~~~~W~~~~d~~ya~~D~-e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~~g~~  231 (289)
T PLN02809        161 GS-------LDPAVVLPLYASGVCWTLVYDTIYAHQDK-EDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGGLALSGYN  231 (289)
T ss_pred             CC-------CChHHHHHHHHHHHHHHHHHHHHHHHhch-hhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            76       4544432 333333334222233334699 999999999999999999655544 45555555543332 2


Q ss_pred             hhhhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023777          203 SRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL  266 (277)
Q Consensus       203 ~g~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~~  266 (277)
                      .+..+++.... ....-......+.+ +. +++++   +.+ .-+.+...|.++.+|++++...
T Consensus       232 ~~~~~~~~~~~-~~~~~~l~~~~~~v-~~-~~~~~---~~~-~F~~n~~~g~~~~~~~~~~~~~  288 (289)
T PLN02809        232 AGLGWPYYAGL-AAAAGHLAWQIQTV-DL-SSRAD---CNR-KFVSNKWFGAIVFAGIVLGKLF  288 (289)
T ss_pred             hcCcHHHHHHH-HHHHHHHHHHHHHc-CC-CCHHH---HHH-HHHhCCHHHHHHHHHHHHHHhh
Confidence            33333322111 11111112112222 11 23332   221 2344445778878888776654

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.15  E-value=6.1e-09  Score=97.02  Aligned_cols=197  Identities=11%  Similarity=0.023  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhc
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLG  124 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~g-lGEl~v~l~~G~l~v~g~yyvq~  124 (277)
                      ++++......++++++.     +....++.-+.++..+......|.    ..||.. ++.+..++.+| ..+++++.+.+
T Consensus        83 ~~~A~~~~~~~~~~~~~-----~~~~ln~l~~~l~~~~~~l~~~yp----~~KR~t~~~~~~lG~~~g-~~~l~g~~Av~  152 (286)
T PRK12895         83 MREAIAFTIIFIAIFEI-----CTFLLNRLVFILSPIVIFLFIIDP----FLKRYTAWRHIYMGSIIG-LGVLAGYLAVI  152 (286)
T ss_pred             HHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHH----HHHhCccccHHHHHHHHH-hHHHHHHHHHc
Confidence            57777777666665532     223445655566666665655553    467765 78888899999 56677777777


Q ss_pred             Cccccccccch--HHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHH
Q 023777          125 STRENLCLSIT--ATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL  202 (277)
Q Consensus       125 g~~~~~~~~~~--~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~  202 (277)
                      ++       ++  +..++..+...+++..-=....+.|+ |+|++.|.||+|+++|++++.++-..+..++.........
T Consensus       153 g~-------~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~-e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~  224 (286)
T PRK12895        153 PA-------FPYNLLIYIIFISSSLWIAGFDIIYVIPDI-EYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGI  224 (286)
T ss_pred             CC-------CCchHHHHHHHHHHHHHHHHHHHHHHhcch-hhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            76       44  33456677788888888899999999 9999999999999999999986654544444433333322


Q ss_pred             hhhhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023777          203 SRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL  266 (277)
Q Consensus       203 ~g~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~~  266 (277)
                      ....+++. +..+...-....-.+.++.  +++++....   .-+.+...|.++.+|.+++..+
T Consensus       225 ~~~~~~y~-~~~~~~~~~l~~q~~~~~~--~~~~~~~~~---~F~~N~~ig~~~~~~~~~~~~~  282 (286)
T PRK12895        225 YIRTLWYL-AALIIIYTLVIYQHLIIDP--RNPINKRMS---FFNANSFIGFVFLIGIILSLRF  282 (286)
T ss_pred             HHhhHHHH-HHHHHHHHHHHHHHHHhcC--CCHHHHHHH---HHHHcCHHHHHHHHHHHHHhcc
Confidence            22223322 1111111212222222221  233332211   3344455677777887776654

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.04  E-value=5.3e-08  Score=91.33  Aligned_cols=133  Identities=13%  Similarity=0.009  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHHHHHhc
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLG  124 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~gl-GEl~v~l~~G~l~v~g~yyvq~  124 (277)
                      ++++...+..+++.+   +.  +....|+.-..++.++++..+.||    ..||+.. +.+..++.++. .+.++++..+
T Consensus        93 ~~~A~~~~~~~~~~~---~~--l~~~ln~l~~~l~~~~~~~~~iY~----~~KR~t~~~~~vLGl~~~~-~~l~~~~Av~  162 (300)
T PRK12876         93 INFSMLLLTLCSFLF---LS--LCWLLNPLCFSLAVLSTLLMIIYP----YTKRVTFLCHWILGLVYYL-AILMNFFAII  162 (300)
T ss_pred             HHHHHHHHHHHHHHH---HH--HHHHHhHHHHHHHHHHHHHHHHHH----hHhcCCchhHHHHHHHHHH-HHHHHHHHHh
Confidence            466666554333322   22  234557777788888888889996    3888865 77777777765 4455555554


Q ss_pred             CccccccccchH----HHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHH
Q 023777          125 STRENLCLSITA----TVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYS  195 (277)
Q Consensus       125 g~~~~~~~~~~~----~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~  195 (277)
                      ++      +.++    ..++.+++..+.++.-=....+.|+ |.|++.|.||+|+++|++++.+.-..+..+..+
T Consensus       163 ~~------~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~-e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~  230 (300)
T PRK12876        163 ET------PLSFSLFCMASLWGISFGMIIAANDIIYAIQDL-EFDRKEGLFSIPARFGEKKAIRIASANLIASAI  230 (300)
T ss_pred             cC------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-hhHHHcCCccchHHHCchhHHHHHHHHHHHHHH
Confidence            43      1344    2334444555555555555569999 999999999999999999986665544444443

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=98.67  E-value=3.5e-06  Score=78.98  Aligned_cols=136  Identities=15%  Similarity=0.088  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcC
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS  125 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g  125 (277)
                      +++....+..+..+++..+. .+....++.-..++.++++....||. =.|+++  +..+..++.++ ..+++++-+.+|
T Consensus        90 ~~~A~~~~~~~~~~~~~~~~-~l~~~~n~l~~~l~~~~~~~~~~Y~~-~KR~t~--~~~~vlg~~~a-~~~l~gw~Av~g  164 (294)
T PRK12873         90 LKTAYSLLIVLLLLSLFVVL-SLPQPSRNLCLSLAFLALPPILIYPS-AKRWFA--YPQAILALCWG-FAVLIPWAAAEG  164 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHHHHHHHHHH-HHhccc--cchHHHHHHHH-hHHHHHHHHHhC
Confidence            56777666666666542221 01111366667777777778888984 224433  44666666655 455566667777


Q ss_pred             ccccccccchHH--HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHH
Q 023777          126 TRENLCLSITAT--VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYS  195 (277)
Q Consensus       126 ~~~~~~~~~~~~--~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~  195 (277)
                      +       +++.  .+...+...+++..-=..-.+.|+ |+|+++|.+++|++.|++ +...-..+..+..+
T Consensus       165 ~-------~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~-edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~  227 (294)
T PRK12873        165 S-------LNGGWPLLFCWLATLLWTFGFDTVYAMADR-RDDAKIGLNSSALSLGSN-ALKTVQICYFLTSI  227 (294)
T ss_pred             C-------CchhHHHHHHHHHHHHHHHHHHHHHHHHhH-hhHHHcCCcccchhcChh-hHHHHHHHHHHHHH
Confidence            6       5543  233334555555554445566699 999999999999999974 44444444444443

>PLN02776 prenyltransferase

Probab=98.60  E-value=1.6e-05  Score=75.87  Aligned_cols=131  Identities=9%  Similarity=0.016  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH-heeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVIC-GYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG  124 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~-~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~  124 (277)
                      ++++...+..+.++|+..    +....++.-..++..+++. ...||    ++||+......++...|-+++++++.+.+
T Consensus        75 ~~~A~~~~~~l~~~g~~~----l~~~~n~l~~~l~~~~~~ly~~vYt----~lKR~t~~~~~lG~~~Ga~ppL~Gw~Avt  146 (341)
T PLN02776         75 VPHAVAWAVVVGAAGVAL----LAYKTNMLTAGLGAGNILLYAFVYT----PLKQIHPANTWVGAVVGAIPPLMGWAAAS  146 (341)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHH----hHccCCchhHHHHHHHHHHHHHHHHHHHc
Confidence            567777776666655421    2234577666777776665 56888    38998887788899999888899999998


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceee--chhcHHHHHHHHHHH
Q 023777          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRL--GTERGSVVVKWAVMI  192 (277)
Q Consensus       125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~l--G~~~a~~ly~~l~~~  192 (277)
                      ++       +++..++..+...++...=-+.=-+.|. |+|+++|.+.+|+.-  |++.++.........
T Consensus       147 g~-------~~~~~~~Lf~~~~~Wq~pHf~~la~~~~-dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l  208 (341)
T PLN02776        147 GQ-------LDAGAMVLAAALYFWQMPHFMALAYMCR-DDYAAGGYRMLSLADATGRRTALVALRNCLYL  208 (341)
T ss_pred             CC-------CCHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHhCCCcccCccccchHHHHHHHHHHHHHH
Confidence            87       7888777777777666632223335677 899999999999865  577777665444333

>PRK13592 ubiA prenyltransferase; Provisional

Probab=98.17  E-value=0.00015  Score=68.04  Aligned_cols=137  Identities=7%  Similarity=0.027  Sum_probs=78.8

Q ss_pred             eeeeccCC----HHHHHHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheee-----ccCCcccccccc-hHHH
Q 023777           38 ISFVLLGS----RTGTLVTAYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIY-----QCPPFRLSYQGL-GEPL  106 (277)
Q Consensus        38 ~~~n~ig~----~~~v~~~~~~~l~~~~-~Gl~~~l~~~~~~~il~lg~~gil~~~~Y-----S~gP~~l~y~gl-GEl~  106 (277)
                      +..+.+.|    +|..+..+..+.++++ ++..          . ...+...++.+.|     +.   ++|+.|+ |-+.
T Consensus        78 ~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l----------~-~i~i~~~~i~~lY~~lm~a~---~~K~~~l~gNl~  143 (299)
T PRK13592         78 FPHRALPSGRVKKKDLAIALSFIVAVSVLLNVL----------F-MNNVGWFLFLYIYGTLMSFW---FFKRDKIQNSLP  143 (299)
T ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH----------H-HHHHHHHHHHHHHHHHHHHH---HHcccCCCcchh
Confidence            34455554    5677777766655553 2221          1 2233344456666     65   7888875 7777


Q ss_pred             HHhhhhHHHHHH-HHHH-----hcCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechh
Q 023777          107 CFAAFGPFATTA-FYLL-----LGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTE  180 (277)
Q Consensus       107 v~l~~G~l~v~g-~yyv-----q~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~  180 (277)
                      +...-|.....+ ..|.     ......    ......+..++-..+...+--...+++|  |+|++ |.+|+|+.+|+|
T Consensus       144 Va~ltg~~f~~g~~~~~~~fg~~~~g~~----~~~~~~~~l~l~afl~~l~rEI~KdieD--~gd~~-~~~Tlpi~~G~k  216 (299)
T PRK13592        144 LALVTHNPVMMILNLYTISFVCYKYNLP----LLSLPTVLLAFTMYFPSLIWEVCRKIRA--PKDET-EYVTYSKLFGYK  216 (299)
T ss_pred             hhhhccchhhhchhhhhhhhhhhhcccc----hhhHHHHHHHHHHHHHHHHHHHHHhhcC--Ccccc-CCeeechhccch
Confidence            766656333212 1111     111100    0111123455566677777788888999  56664 588999999999


Q ss_pred             cHHHHHHHHHHHHHH
Q 023777          181 RGSVVVKWAVMILYS  195 (277)
Q Consensus       181 ~a~~ly~~l~~~~y~  195 (277)
                      +|.++-..+..++.+
T Consensus       217 kA~~ia~~l~ii~v~  231 (299)
T PRK13592        217 KATRFIEVVTLLDIL  231 (299)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999887776655554

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.019  Score=54.08  Aligned_cols=170  Identities=14%  Similarity=0.030  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH-HheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVI-CGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG  124 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil-~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~  124 (277)
                      |++.+..+..+-.+|..-    +....|+..-.+++.+++ =.+.||.   -+|||-.-.+..+-+-|-.+++.+|.+.+
T Consensus        98 p~~al~fgl~L~~~g~~~----l~~~vn~laa~l~~~gi~~Yv~vYT~---~lKR~T~~NiviGg~aGa~PpliGwaAvt  170 (304)
T COG0109          98 PREALAFGLVLGVAGFSL----LWFLVNLLAAVLGLFGIFFYVVVYTL---WLKRRTPQNIVIGGFAGAMPPLIGWAAVT  170 (304)
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhh---hccCCcccceeeeeccccccccceeeeee
Confidence            678887777776666422    224566654444444443 3567886   68999777776666668889999999999


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023777          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR  204 (277)
Q Consensus       125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g  204 (277)
                      |+       +++..++....+.++.--=-++=-++-. |+=+++|.--+|+.-|++.+++-...-..+...........|
T Consensus       171 g~-------~~~~a~~Lf~IiF~WtPpHfwALAl~~~-~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~g  242 (304)
T COG0109         171 GS-------ISLGAILLFAIIFLWTPPHFWALALKYK-DDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALLG  242 (304)
T ss_pred             CC-------CCchHHHHHHHHHHhccHHHHHHHHHHH-HHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            98       7777765555555443221111122223 556889999999999999988755432222222222222344


Q ss_pred             hh-hHHHHHHHHhHHHHHHHHHHHHHh
Q 023777          205 AL-PLSCIFLCAMTSPIGKLVVSYVEE  230 (277)
Q Consensus       205 ~l-P~~~ll~~lltlPla~~~~~~~~~  230 (277)
                      .. +.+..++.++.........+..++
T Consensus       243 ~~g~~Y~v~a~~l~~~~l~~a~~~~~~  269 (304)
T COG0109         243 YVGYLYLVVATLLGAWFLALAWKLYRK  269 (304)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhC
Confidence            33 344444456666666666666654

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=96.46  E-value=0.31  Score=45.82  Aligned_cols=111  Identities=14%  Similarity=0.055  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHH-HHHhhhhHHHHHHHHHHhc
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEP-LCFAAFGPFATTAFYLLLG  124 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl-~v~l~~G~l~v~g~yyvq~  124 (277)
                      +++....+..++++|+ ++.    ...++....+....++..+.||.   ++|++++-+. .+...++.-...|+.... 
T Consensus        92 ~~~A~~~~~~l~~~~l-~la----~~l~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~d~l~va~~~~lr~~~G~~a~~-  162 (295)
T PRK12324         92 VSLAYILAVVLLVASL-ALA----YLLSPKLALVLLVYLVLNLAYSF---KLKHQPVLDVFCIASGFVLRAIAGGVAIG-  162 (295)
T ss_pred             HHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHhhH---HhcCCchhhHHHHHHHHHHHHHHHHHHhC-
Confidence            4666666666666664 122    12355555555667778899995   7999997654 445566654555543332 


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCccc
Q 023777          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSP  173 (277)
Q Consensus       125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL  173 (277)
                      ..       .+...++.+....+..+..-=.+|..+. ++|.+..|+++
T Consensus       163 ~~-------~s~wll~~~~~~~lfla~~kR~~E~~~~-~~~~~~~r~~~  203 (295)
T PRK12324        163 VP-------LSPWLLLCTALLSLFLAAGKRKAELRLL-EDTGAKHRKVL  203 (295)
T ss_pred             CC-------ccHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccccccc
Confidence            22       3433344444555666666666777776 66655555553

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=94.63  E-value=0.77  Score=42.56  Aligned_cols=34  Identities=24%  Similarity=0.053  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC
Q 023777          136 ATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK  170 (277)
Q Consensus       136 ~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk  170 (277)
                      +...+..+-..+..++.+..||+.|+ |.|++|-|
T Consensus        47 ~~~~l~~l~~~~~~~ag~~iND~~D~-eiD~~n~r   80 (289)
T COG0382          47 KLLLLAFLAFFLARSAGYVINDLADR-EIDRINPR   80 (289)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhhh-hccCCCCC
Confidence            45667777788889999999999999 99999987

>PRK08238 hypothetical protein; Validated

Probab=94.26  E-value=4.4  Score=40.65  Aligned_cols=105  Identities=15%  Similarity=0.092  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchH-HHHHhhhhHHHHHHHHHHhc
Q 023777           46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGE-PLCFAAFGPFATTAFYLLLG  124 (277)
Q Consensus        46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGE-l~v~l~~G~l~v~g~yyvq~  124 (277)
                      +++...++..++++|+. +.    +..++....+.+..++....||.   ++|++++-+ +..++.++.-.+.|+. + .
T Consensus       272 ~~~A~~~~~~l~~~~~~-l~----~~l~~~~~~~~~~~~~~~~~Ys~---~lKr~~~~~~~~la~~~~lr~~~G~~-a-~  341 (479)
T PRK08238        272 IPFGLAAAPLLLLAGLA-LA----LALGPAFLLVLLAYLALTLAYSL---RLKRKVLVDVLTLAALYTLRIIAGAA-A-I  341 (479)
T ss_pred             HHHHHHHHHHHHHHHHH-HH----HHHhHHHHHHHHHHHHHHHHhhH---HhcCCccccchHHHHHHHHHHHHHHH-H-h
Confidence            46666666666666642 22    22355555555666677889994   799999654 5556676655555543 2 2


Q ss_pred             CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC
Q 023777          125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK  170 (277)
Q Consensus       125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk  170 (277)
                      +        .++..++.+... ++...+-+..-..|. +.|++.|+
T Consensus       342 ~--------~~~s~wll~~~~-~~~l~la~~KR~~El-~~~~~~~~  377 (479)
T PRK08238        342 G--------VALSFWLLAFSM-FFFLSLALVKRYTEL-RRALQRGK  377 (479)
T ss_pred             c--------cCHHHHHHHHHH-HHHHHHHHHHhHHHH-HHHHhcCC
Confidence            2        233444443222 445556666677777 77777775

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=92.77  E-value=1.8  Score=39.68  Aligned_cols=43  Identities=14%  Similarity=0.033  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhc
Q 023777          137 TVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTER  181 (277)
Q Consensus       137 ~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~  181 (277)
                      ..++..+-..+..++....||+-|+ |.|+++ |++=|..=|+-+
T Consensus        38 ~~~l~~l~~~l~~~a~~~~Nd~~D~-~~D~~~-r~~Rpl~~G~is   80 (279)
T PRK12884         38 EALLGFLTAFFASGSANALNDYFDY-EVDRIN-RPDRPIPSGRIS   80 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhH-hhhhcc-CCCCCCCCCCCC
Confidence            3444445566777788889999999 999999 677777667543

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=92.13  E-value=2.2  Score=40.13  Aligned_cols=44  Identities=14%  Similarity=-0.008  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC-cccceeechhc
Q 023777          137 TVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK-MSPLVRLGTER  181 (277)
Q Consensus       137 ~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk-~TL~v~lG~~~  181 (277)
                      ..+...+-..+..++-+..||+-|+ |-|+++.| ++=|.-=|+-.
T Consensus        45 ~~~~~~~g~~l~~~a~~~~Nd~~D~-~iD~~~~RT~~RPl~sG~is   89 (294)
T PRK12873         45 LLLLIILGGLAVSGAGCIANDLWDR-RIDRKVERTKNRPLARGKIS   89 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCCcCCCCCCCCCCCC
Confidence            3445556667888899999999999 99998887 46665555543

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=91.98  E-value=2.5  Score=37.42  Aligned_cols=38  Identities=21%  Similarity=0.148  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCChhhhhcC-Ccccceeechhc
Q 023777          143 LLVGLTTSLILFCSHFHQVVEGDRNVG-KMSPLVRLGTER  181 (277)
Q Consensus       143 lp~gll~~~ill~Nn~~D~~e~D~~~G-k~TL~v~lG~~~  181 (277)
                      +...+....+...||.-|. |.|+.+. |..-|..=|+-+
T Consensus        30 l~~~~~~~~~~~~Nd~~D~-~~D~~~~~~~~rPl~~g~i~   68 (257)
T PF01040_consen   30 LAVFLLQLAVYLLNDYFDY-EEDRIHPNKPNRPLPSGRIS   68 (257)
T ss_pred             HHHHHHHHHHHHhhChhhh-hcCcccccccCcchhHHHHh
Confidence            3344778888899999999 9999963 334344344444

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=91.81  E-value=5.6  Score=36.67  Aligned_cols=47  Identities=4%  Similarity=-0.024  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC---cccce-eechhcHHH
Q 023777          137 TVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK---MSPLV-RLGTERGSV  184 (277)
Q Consensus       137 ~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk---~TL~v-~lG~~~a~~  184 (277)
                      ..++..+...+..++....||+-|+ |.|+++.|   |.+|. ++.++.+..
T Consensus        37 ~~~l~~l~~~l~~~a~~~~Nd~~D~-~~D~~~~Rt~~RPl~sG~is~~~a~~   87 (282)
T TIGR01475        37 TLILILIAAVSARTAAMAFNRIIDR-AIDARNPRTKNRPLVSGLISKKEART   87 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-cccCCCCccCCCCCCCCCcCHHHHHH
Confidence            3556666777889999999999999 99999743   33333 344444443

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=91.56  E-value=7.1  Score=36.11  Aligned_cols=33  Identities=9%  Similarity=-0.007  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC
Q 023777          137 TVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK  170 (277)
Q Consensus       137 ~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk  170 (277)
                      ..++..+...+..++-...||+-|+ |-|+++.|
T Consensus        37 ~~~l~~~~~~l~~~a~~~~Nd~~D~-~iD~~~~R   69 (279)
T PRK12869         37 PLIPLLIGGTLASGGSAAFNHGIER-DIDKVMSR   69 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHhchHhc-CCCCCCCC
Confidence            3445555666778888999999998 99999764

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=91.53  E-value=1.3  Score=41.59  Aligned_cols=173  Identities=15%  Similarity=0.060  Sum_probs=90.3

Q ss_pred             hhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchH---HHHHHHHHHH
Q 023777           70 EAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITA---TVLSASLLVG  146 (277)
Q Consensus        70 ~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g~~~~~~~~~~~---~~ll~slp~g  146 (277)
                      .+-+|.-..+|..++...+.|+.- .|+.|-|-  ..-+++|+....+|---.+ |+       .+.   ..+..|-..-
T Consensus       168 lqLn~ysi~lg~~sl~~v~~ypl~-kr~TY~pq--~vLgltfnwGAllGw~A~~-g~-------~~~s~~~plYls~v~W  236 (353)
T KOG1381|consen  168 LQLNWYSIALGASSLALVITYPLM-KRFTYWPQ--LVLGLTFNWGALLGWCALK-GS-------LSPSAVLPLYLSGVCW  236 (353)
T ss_pred             HhccHHHHHhcccccccEEEeehh-hhcchhHH--HHHhhhcchhhhhcchhhc-Cc-------cChhhhhHHHHhhhhh
Confidence            477888899999999999999863 25555442  3446677766666543332 32       111   1112222222


Q ss_pred             HHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHH-HHhhh-hhHHHHHHHHhHHHHHHHH
Q 023777          147 LTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAI-GLSRA-LPLSCIFLCAMTSPIGKLV  224 (277)
Q Consensus       147 ll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~-v~~g~-lP~~~ll~~lltlPla~~~  224 (277)
                      .++---..  -..|- +.|.+.|.++.+-|+|++.-.++- .+....-..+... +..|. -|.+..+. .    .+.+.
T Consensus       237 tl~YDTIY--AHQDK-~dDvk~gvkSTALrfG~nTK~wl~-gf~a~~ia~La~aG~~s~q~~pyy~~lg-~----~~~~L  307 (353)
T KOG1381|consen  237 TLIYDTIY--AHQDK-RDDVKIGVKSTALRFGDNTKPWLS-GFGAAQIASLAAAGIASDQTWPYYAALG-A----VAARL  307 (353)
T ss_pred             hhhhhhhh--hcccc-hhhhHhcchhhhhhcCCCCchHHh-hhhHHHHHHHHHhhhccCCCchHHHHHH-H----HHHHH
Confidence            22222222  24686 999999999999999988855543 3332222222222 22232 35544322 1    12333


Q ss_pred             HHHHHhhc-cCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023777          225 VSYVEENH-KDKGKIFMAKYYCVRFHALFGAALVAGLITARIL  266 (277)
Q Consensus       225 ~~~~~~~~-~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~~  266 (277)
                      .....+.. +++++   +.+ --+.+.-.|+.+..|+.+++++
T Consensus       308 ~~~i~~vdiDnp~d---C~k-~f~sN~ntGli~~~~i~~d~ll  346 (353)
T KOG1381|consen  308 GSQIYKVDIDNPSD---CWK-KFKSNSNTGLILFSGIVLDTLL  346 (353)
T ss_pred             HhheeeeecCChHH---HHH-HHHhcCcchHHHHHHHHHHHHH
Confidence            33333321 12221   211 2233345677777777777664

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=91.34  E-value=9.6  Score=35.07  Aligned_cols=54  Identities=9%  Similarity=0.054  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC---cccce-eechhcHHHHHHHHHHH
Q 023777          138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK---MSPLV-RLGTERGSVVVKWAVMI  192 (277)
Q Consensus       138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk---~TL~v-~lG~~~a~~ly~~l~~~  192 (277)
                      .++..+...+..++-...||+-|+ |.|+++.|   |.+|. ++-++.+......+..+
T Consensus        37 ~~l~~~~~~l~~~a~~~~Nd~~D~-~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~   94 (280)
T TIGR01473        37 LLLTLLGTTLAAASANAFNMYIDR-DIDKKMKRTRNRPLVTGRISPREALAFGLLLGVL   94 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccc-CcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence            445555666888888999999999 99998653   43333 34444444443333333

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=90.80  E-value=3.3  Score=38.95  Aligned_cols=53  Identities=19%  Similarity=0.209  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCChhhhhcC-Ccccce---eechhcHHHHHHHHHHH
Q 023777          139 LSASLLVGLTTSLILFCSHFHQVVEGDRNVG-KMSPLV---RLGTERGSVVVKWAVMI  192 (277)
Q Consensus       139 ll~slp~gll~~~ill~Nn~~D~~e~D~~~G-k~TL~v---~lG~~~a~~ly~~l~~~  192 (277)
                      ++..+...+..++....||+.|+ |.||++- |+.=|.   ++.++.|......+..+
T Consensus        49 llafl~~~l~~sa~y~iND~~D~-e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~  105 (295)
T PRK12324         49 LLAFVLFCLASSAVYLVNDIRDV-EADRLHPTKRNRPIASGVVSVSLAYILAVVLLVA  105 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHH-HhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHH
Confidence            34444455667888999999999 9999973 333333   34445444433333333

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=90.40  E-value=6.7  Score=36.00  Aligned_cols=40  Identities=20%  Similarity=-0.046  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeech
Q 023777          138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGT  179 (277)
Q Consensus       138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~  179 (277)
                      .++..+...+..++....||+-|+ |.|+.+. ++=|..=|+
T Consensus        40 ~~l~~l~~~l~~~~~~~~Nd~~D~-~iD~~~~-~~Rpl~~G~   79 (276)
T PRK12882         40 TGLAFAAVFLATGAGNAINDYFDR-EIDRINR-PDRPIPSGA   79 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh-ccccccC-CCCCcCCCC
Confidence            344555566777888899999999 9999754 444544454

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=90.37  E-value=10  Score=35.57  Aligned_cols=34  Identities=6%  Similarity=-0.054  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCc
Q 023777          137 TVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKM  171 (277)
Q Consensus       137 ~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~  171 (277)
                      ..++..+...+..++-+..||+-|+ |-|+++-|+
T Consensus        38 ~l~l~~~~~~~~rsag~~~Ndi~Dr-~iD~~~~RT   71 (286)
T PRK12895         38 KILLILIAAVSARTSAMSINRIEGL-RYDMINPRK   71 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHh-cccCCCCcC
Confidence            4444555566888888999999999 999998543

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=89.86  E-value=9.3  Score=35.36  Aligned_cols=46  Identities=11%  Similarity=-0.088  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC-cccceeechhcHHH
Q 023777          138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK-MSPLVRLGTERGSV  184 (277)
Q Consensus       138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk-~TL~v~lG~~~a~~  184 (277)
                      .++..+...+..++-...||+-|+ |-|+++.| ++=|.-=|+-..+.
T Consensus        42 ~~~~~~~~~l~~~a~~~~Nd~~D~-~iD~~~~Rt~~RPl~sG~is~~~   88 (281)
T TIGR01474        42 LGLFTVGAILMRGAGCVINDIWDR-DFDPQVERTKSRPLASGAVSVRQ   88 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhh-cccccCCcccCCCCCCCCcCHHH
Confidence            334444555667888899999999 99997765 23343345444333

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=89.80  E-value=6.7  Score=36.70  Aligned_cols=48  Identities=10%  Similarity=-0.116  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC-cccceeechhcHHHHH
Q 023777          138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK-MSPLVRLGTERGSVVV  186 (277)
Q Consensus       138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk-~TL~v~lG~~~a~~ly  186 (277)
                      .++..+-..+..++-+..||+-|+ |-|+++.| ++-|..=|+-+.+...
T Consensus        47 l~l~~~g~~~~~~a~~~~Nd~~Dr-~iD~~~~RT~~RPL~sG~is~~~A~   95 (289)
T PLN02809         47 LALFGCGALLLRGAGCTINDLLDR-DIDKKVERTKLRPIASGALTPFQGV   95 (289)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHh-ccccCCCCCCCCCCCCCCCCHHHHH
Confidence            334555566788888999999999 99998876 4666666765444433

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=89.37  E-value=13  Score=34.70  Aligned_cols=55  Identities=9%  Similarity=0.024  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC---cccc-eeechhcHHHHHHHHHHHH
Q 023777          138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK---MSPL-VRLGTERGSVVVKWAVMIL  193 (277)
Q Consensus       138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk---~TL~-v~lG~~~a~~ly~~l~~~~  193 (277)
                      .++..+...+..++-...||+-|+ |-|+++.|   |.+| =++.++.|......+..++
T Consensus        46 ~~l~~l~~~l~~aa~~~iNd~~D~-~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g  104 (296)
T PRK04375         46 LLLTLLGIALVAGAAGALNNYIDR-DIDAKMERTKNRPLVTGRISPREALIFGLVLGVLG  104 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhh-ccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence            344455556778888899999999 99998653   3333 2344444444433333333

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=89.25  E-value=3.7  Score=38.54  Aligned_cols=46  Identities=9%  Similarity=-0.089  Sum_probs=28.6

Q ss_pred             HHHHHHHHHhhcCCCCChhhhhcCCcccceeec---hhcHHHHHHHHHHHH
Q 023777          146 GLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLG---TERGSVVVKWAVMIL  193 (277)
Q Consensus       146 gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG---~~~a~~ly~~l~~~~  193 (277)
                      .+...+....||+-|. |.|++++++ =|+.=|   ++.+......+..++
T Consensus        64 ~l~~~~~n~~NDy~D~-d~D~~~~~~-Rpi~~G~is~~~a~~~~~~l~~~~  112 (306)
T TIGR02056        64 PCLTGYTQTINDFYDR-DIDAINEPY-RPIPSGAISEPEVITQIVLLFIAG  112 (306)
T ss_pred             HHHHHHHHHHHhHhhh-hhhccCCCC-CCCCCCccCHHHHHHHHHHHHHHH
Confidence            5666777899999999 999988753 344334   444443333333333

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=88.67  E-value=5.4  Score=36.88  Aligned_cols=46  Identities=11%  Similarity=-0.016  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC-cccceeechhcHHH
Q 023777          138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK-MSPLVRLGTERGSV  184 (277)
Q Consensus       138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk-~TL~v~lG~~~a~~  184 (277)
                      .++..+...+..++-...||+-|+ |-|+++.| ++=|..=|+-..+.
T Consensus        47 ~ll~~l~~~l~~~a~~~~Nd~~D~-~iD~~~~Rt~~Rpl~sG~is~~~   93 (285)
T PRK12847         47 LVLFIIGSVLMRSAGCIINDIFDR-KIDKHVARTKNRPLASGALSVKQ   93 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHh-hhccCCCcccCCCCCCCCcCHHH
Confidence            344444556777888899999999 99997665 24444445444333

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=88.54  E-value=18  Score=33.21  Aligned_cols=55  Identities=13%  Similarity=0.034  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC-cccce-eechhcHHHHHHHHHHHH
Q 023777          138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK-MSPLV-RLGTERGSVVVKWAVMIL  193 (277)
Q Consensus       138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk-~TL~v-~lG~~~a~~ly~~l~~~~  193 (277)
                      .++..+...+..++-...||+-|+ |.|+++.+ |.+|. ++-++.+......+..++
T Consensus        39 ~~l~~l~~~l~~~~~~~iNd~~D~-~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~   95 (279)
T PRK09573         39 IILAALVVFLVCAGGNVINDIYDI-EIDKINKPERPIPSGRISLKEAKIFSITLFIVG   95 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccc-ccccccCCCCCcCCCccCHHHHHHHHHHHHHHH
Confidence            445555666778888899999999 99998642 33332 444555554444444333

>PLN02776 prenyltransferase

Probab=88.40  E-value=21  Score=34.44  Aligned_cols=41  Identities=12%  Similarity=0.041  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC-cccceeech
Q 023777          138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK-MSPLVRLGT  179 (277)
Q Consensus       138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk-~TL~v~lG~  179 (277)
                      .++..+-..+..++=+..||+-|+ |-|++..| +.=|.-=|+
T Consensus        31 l~~~~lg~~l~~aaa~~~N~i~Dr-diD~~m~RT~~RPLpsGr   72 (341)
T PLN02776         31 LGWTCAGTMLCAASANTLNQVFEV-KNDSKMKRTMRRPLPSGR   72 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhh-hhcccCCCCCCCCCCCCC
Confidence            455566777888899999999999 99988665 233333344

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=87.91  E-value=22  Score=33.16  Aligned_cols=20  Identities=10%  Similarity=-0.024  Sum_probs=16.8

Q ss_pred             HHhhcCCCCChhhhhcCCccc
Q 023777          153 LFCSHFHQVVEGDRNVGKMSP  173 (277)
Q Consensus       153 ll~Nn~~D~~e~D~~~Gk~TL  173 (277)
                      ...||+.|. |.||++.||..
T Consensus        62 y~iND~~D~-D~Dr~~prk~~   81 (282)
T PRK12875         62 YGVNDVFDA-DTDELNPKKDR   81 (282)
T ss_pred             hcchhhhhh-hccccCCCccC
Confidence            457999999 99999888763

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=87.91  E-value=23  Score=33.40  Aligned_cols=38  Identities=8%  Similarity=-0.017  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHhhcCCCCChhhhhcCC-cccceeechh
Q 023777          142 SLLVGLTTSLILFCSHFHQVVEGDRNVGK-MSPLVRLGTE  180 (277)
Q Consensus       142 slp~gll~~~ill~Nn~~D~~e~D~~~Gk-~TL~v~lG~~  180 (277)
                      .+...+..++-...||+-|+ |-|+++.| +.=|.-=|+-
T Consensus        53 ~lg~~l~~aaa~~~Nd~~D~-~iD~~~~Rt~~RPlpsG~i   91 (306)
T PRK13362         53 VIGLSLVVASGCALNNCIDR-DIDAKMQRTRNRVTVTGEI   91 (306)
T ss_pred             HHHHHHHHHHHHHHhChHHh-CcCCCCCCCCCCCCCCCCC
Confidence            34566777888999999998 99998765 2333333543

>PRK13592 ubiA prenyltransferase; Provisional

Probab=85.87  E-value=6.3  Score=37.34  Aligned_cols=62  Identities=13%  Similarity=0.105  Sum_probs=39.4

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCc-ccce-eechhcHHHHHHHHHHHHH
Q 023777          132 LSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKM-SPLV-RLGTERGSVVVKWAVMILY  194 (277)
Q Consensus       132 ~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~-TL~v-~lG~~~a~~ly~~l~~~~y  194 (277)
                      ++...+.++..+-..+..++-...||+.|+ |-|+.|.-. -+|. ++-++.|+.+-..+..++.
T Consensus        42 ~~~~~~~~l~~~~vf~~~~~gniiNDy~D~-EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l  105 (299)
T PRK13592         42 FRIGIQEFVGVFTVFGFWMILRIADDFKDY-ETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSV  105 (299)
T ss_pred             CCCchHHHHHHHHHHHHHHHhHHHHHHhhH-HHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Confidence            334456666666666777889999999999 999887532 3332 4555666544434433333

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=85.78  E-value=30  Score=32.17  Aligned_cols=45  Identities=9%  Similarity=0.015  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCc-ccceeechhcHH
Q 023777          138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKM-SPLVRLGTERGS  183 (277)
Q Consensus       138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~-TL~v~lG~~~a~  183 (277)
                      .++..+...+..++-+..||+-|+ |-|+++.|. +=|.-=|+-+-+
T Consensus        41 ~~l~~l~~~l~~~a~~~~Nd~~Dr-~iD~~~~RT~~RPL~sG~is~~   86 (284)
T PRK12888         41 LLLVTVAMVGARTFAMAANRIIDR-EIDARNPRTAGRELVTGAVSVR   86 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhh-CCCCCCCCCCCCCCCCCCCCHH
Confidence            445666777888889999999999 999998642 223333554433

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=85.67  E-value=31  Score=32.19  Aligned_cols=46  Identities=7%  Similarity=-0.078  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC-cccceeechhcHH
Q 023777          137 TVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK-MSPLVRLGTERGS  183 (277)
Q Consensus       137 ~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk-~TL~v~lG~~~a~  183 (277)
                      ...+..+...+..++-...||+-|+ |-|+++.| +.=|..=|+-..+
T Consensus        43 ~l~~~~l~~~l~~~a~~~~Nd~~D~-~iD~~~~RT~~RPL~sG~is~~   89 (291)
T PRK12886         43 QLDWILMAMVGARTAAMGFNRLIDA-EIDARNPRTAGRAIPAGLISKG   89 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhh-ccCCCCCCCCCCCCCCCCcCHH
Confidence            3445556666777777888999999 99998764 1234444544333

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=85.57  E-value=13  Score=34.14  Aligned_cols=44  Identities=11%  Similarity=-0.087  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHhhcCCCCChhhhhcCCccccee---echhcHHHHHHHH
Q 023777          144 LVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVR---LGTERGSVVVKWA  189 (277)
Q Consensus       144 p~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~---lG~~~a~~ly~~l  189 (277)
                      ...+..++....||+-|+ |.|+.+. ++=|..   +-++.+......+
T Consensus        45 ~~~~~~~a~~~~Nd~~D~-~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l   91 (277)
T PRK12883         45 VVYLGCSGGNTINDYFDY-EIDKINR-PNRPLPRGAMSRKAALYYSLLL   91 (277)
T ss_pred             HHHHHHHHHhHHHhhhhH-hccccCC-CCCCCCCCccCHHHHHHHHHHH
Confidence            334445678899999999 9999765 444443   4455555444333

>PRK13595 ubiA prenyltransferase; Provisional

Probab=85.00  E-value=15  Score=34.61  Aligned_cols=25  Identities=16%  Similarity=0.029  Sum_probs=19.8

Q ss_pred             HHHHHHHHhhcCCCCChhhhhcCCcc
Q 023777          147 LTTSLILFCSHFHQVVEGDRNVGKMS  172 (277)
Q Consensus       147 ll~~~ill~Nn~~D~~e~D~~~Gk~T  172 (277)
                      .....+--.||+-|+ |.|++|.|+-
T Consensus        58 p~n~~~~giND~fD~-eiDa~Npr~~   82 (292)
T PRK13595         58 PFNLLIYGLNDLADR-ETDAASPRKG   82 (292)
T ss_pred             HHHHHHHHHHhhhhh-hhhccCCCCC
Confidence            344466778999999 9999988773

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=84.81  E-value=6.6  Score=35.98  Aligned_cols=32  Identities=13%  Similarity=0.022  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCc
Q 023777          139 LSASLLVGLTTSLILFCSHFHQVVEGDRNVGKM  171 (277)
Q Consensus       139 ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~  171 (277)
                      +...+...+..++....||.-|+ |.|+.+.++
T Consensus        39 ~~~~~~~~~~~~~~~~~N~~~D~-~~D~~n~~~   70 (285)
T PRK12872         39 WLLLLITFLIAAAVYIINYLTDL-EEDIINKPE   70 (285)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcCC-chhhcCCCc
Confidence            44555677888889999999999 999987553

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=84.54  E-value=33  Score=31.63  Aligned_cols=29  Identities=17%  Similarity=0.031  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCChhhhhcCC
Q 023777          141 ASLLVGLTTSLILFCSHFHQVVEGDRNVGK  170 (277)
Q Consensus       141 ~slp~gll~~~ill~Nn~~D~~e~D~~~Gk  170 (277)
                      ..+...+..++-...||+-|+ |-|+++.|
T Consensus        47 ~~~g~~l~~~a~~~~Nd~~D~-~iD~~~~R   75 (282)
T PRK12848         47 FVLGVFLMRAAGCVINDYADR-DFDGHVKR   75 (282)
T ss_pred             HHHHHHHHHHHHHHHHhhHHh-ccCCCCCC
Confidence            334445667888999999999 99987554

>PRK08238 hypothetical protein; Validated

Probab=84.35  E-value=17  Score=36.54  Aligned_cols=56  Identities=18%  Similarity=0.156  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC-cccceeec---hhcHHHHHHHHHHHH
Q 023777          137 TVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK-MSPLVRLG---TERGSVVVKWAVMIL  193 (277)
Q Consensus       137 ~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk-~TL~v~lG---~~~a~~ly~~l~~~~  193 (277)
                      ..++..+..++..++....||+-|+ |.||++-| +.=|.-=|   .+.|..+...+..++
T Consensus       227 ~~~~~f~~~~l~~sa~~~~ND~~D~-e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~  286 (479)
T PRK08238        227 AALLAFLAFSLCASAVYILNDLLDL-EADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAG  286 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHh-hhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            3455556677899999999999999 99999843 44454444   444444333333333

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=84.14  E-value=38  Score=32.02  Aligned_cols=43  Identities=5%  Similarity=-0.049  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC-cccceeechhc
Q 023777          138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK-MSPLVRLGTER  181 (277)
Q Consensus       138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk-~TL~v~lG~~~  181 (277)
                      .++..+...+.-++=+..||+-|+ |-|+++-| ++=|.-=|+-.
T Consensus        49 ~~~~~~a~~~~Rsag~~~Nd~~Dr-diD~~~~RT~~RPLpsG~is   92 (300)
T PRK12876         49 ISLGGSAFFCARTVGIIVNQIIDC-AIDKKNPRTSSRVLPAKLLS   92 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHh-cccCCCCCCCCCCCCCCCCC
Confidence            557777778888888999999999 99999986 34444446533

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=84.00  E-value=17  Score=33.92  Aligned_cols=43  Identities=12%  Similarity=-0.118  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCc-ccceeechhc
Q 023777          138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKM-SPLVRLGTER  181 (277)
Q Consensus       138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~-TL~v~lG~~~  181 (277)
                      .++..+...+..++-...||+-|+ |-|+++.|. +=|.-=|+-+
T Consensus        48 ~~l~~lg~~~~~~a~~~~Nd~~D~-~iD~~~~Rt~~RPL~sG~is   91 (290)
T PRK12870         48 VGIIILGALATSAAGCVVNDLWDR-DIDPQVERTRFRPLASRRLS   91 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHh-ccCCCCCcccCCCCCCCCcC
Confidence            334455566778888999999999 999875543 3444445433

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=82.31  E-value=18  Score=33.89  Aligned_cols=40  Identities=8%  Similarity=0.006  Sum_probs=25.1

Q ss_pred             hHHHHHHHHHHHHHHHHH-HHhhcCCCCChhhhhcCCcccce
Q 023777          135 TATVLSASLLVGLTTSLI-LFCSHFHQVVEGDRNVGKMSPLV  175 (277)
Q Consensus       135 ~~~~ll~slp~gll~~~i-ll~Nn~~D~~e~D~~~Gk~TL~v  175 (277)
                      +|..++.++-+-...+.- --.||+-|. |.|++|.|+.=+.
T Consensus        32 ~~~~l~~~l~~~~~~n~am~~~Ndy~D~-~~d~dn~r~~g~~   72 (282)
T PRK13105         32 DWLFVVGTVFFLIPYNLAMYGINDVFDY-ESDLRNPRKGGVE   72 (282)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhhhhhhhh-hcCCCCcccCCCC
Confidence            454444444433333332 366999999 9999998876553

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=82.26  E-value=39  Score=31.95  Aligned_cols=32  Identities=6%  Similarity=-0.132  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC
Q 023777          138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK  170 (277)
Q Consensus       138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk  170 (277)
                      .++..+...+..++-...||+-|+ |-|++..|
T Consensus        74 ~~l~~l~~~l~~~a~~~~Nd~~Dr-~iD~~~~R  105 (314)
T PRK12878         74 LFLFFVGAIAMRGAGCTYNDIVDR-DIDAKVAR  105 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hcccCCCC
Confidence            334444555667777899999998 99987543

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=81.62  E-value=46  Score=31.08  Aligned_cols=35  Identities=6%  Similarity=0.047  Sum_probs=24.3

Q ss_pred             hHHH-HHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC
Q 023777          135 TATV-LSASLLVGLTTSLILFCSHFHQVVEGDRNVGK  170 (277)
Q Consensus       135 ~~~~-ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk  170 (277)
                      ++.. ++..+...+..++-...||+-|+ |-|+++.|
T Consensus        45 ~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr-diD~~~~R   80 (291)
T PRK12874         45 GFKLLILGILAAVSARNFAMAFNRLVDR-DIDKDNPR   80 (291)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccccCCCC
Confidence            4443 33444445566677888999999 99999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00