Citrus Sinensis ID: 023783

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MFGRMSLSRLSSRTHILPLLQQSRCVKDVLWSNYKYTRVDTSCYASVWGLMPRCGYGSNMTNGYRKPQSFGSGCLWKSNSFSSFQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKVNED
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHccccccccccccccEEEcccccEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccEEEEccHHHHHHHHccccccccccEEEEEEEEEEccccccEEEEcccEEEEcccccEEEEEEEEccccccEEEEEEcccccHHHHHHcccEEEEEEcccccccccEEEEEEEEEEccccccccccccccEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccEEHHcccHHHccHHHHHHcccccHHHccccccccccHHHHHHHHHHccHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccHHccccccccEEEEEEEcccccccccEEEccEEEEEEEcccHEEEEEEEcccccccEEEEEEEEcccHHHHHHHcEEEEEEEEcEEcccccEEcccEEEEEcHHHHcccccccccEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
mfgrmslsrlssrthilpllqqsrcvkdvlwsnykytrvdtscyasvwglmprcgygsnmtngyrkpqsfgsgclwksnsfssfQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFcqatgyggtvqrKETVEEKIARhskdgtvtTREVVVQFNadvadgmpwkfiptqrevrvkpgesalafytaenrsstpitgvstynvtpMKAAVYFNKIQcfcfeeqrllpgeqidmpvffyidpefetdprmdginNLILSYTFFKVNED
Flexible Loop (DISEMBL)
mfgrmslsrlssrthilpllqqsrcvKDVLWSNYKYTRVDTSCYASVWGLMPRCGYGSNMTNGYRKPQSFGSGCLWKSNSFSSFQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQAtgyggtvqrketveekiarhskdgtvttreVVVQFnadvadgmpwkfiptqrevrvkPGESALAfytaenrsstpitgVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKVNED
Low Complexity Region (SEG)
MFGRMSLSRLSSRTHILPLLQQSRCVKDVLWSNYKYTRVDTSCYASVWGLMPRCGYGSNMTNGYRKPQSFGSGCLWKSNSFSSFQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKVNED
Disordered region (IsUnstruct)
*************THILPLLQQSRCVKDVLWSNYKYTRVDTSCYASVWGLMPRCGYGSNMTNGYRKPQSFGSGCLWKSNSFSSFQ**************KMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARH*KDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKV***
Disordered Region (DISOPRED)
*********LSSRTHILPLLQQSRC**********YTRVDTSCYASVWG*****************************************************LYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKE****************TREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKV***
Disordered Region (DISEMBL)
*********LSSRTHILPLLQQSRCVKDVLWSNYKYTRVDTSCYASVWGLMPRCGYGSNMTNGYRKPQSFGSGCLWKSNSFSSF************KSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKVNED
Disordered Region (DISPRO)
*FGRMSLSRLSSRTHILPLLQQSRCVKDVLWSNYKYTRVDTSCYASVWGLMPRCGYG*************************************EQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETV********KDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKVN**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFGRMSLSRLSSRTHILPLLQQSRCVKDVLWSNYKYTRVDTSCYASVWGLMPRCGYGSNMTNGYRKPQSFGSGCLWKSNSFSSFQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKVNED
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	277	2.2.26 [Sep-21-2011]
Q8GWR0	287	Cytochrome c oxidase asse	yes	no	0.703	0.679	0.861	5e-98
O21243	182	Cytochrome c oxidase asse	N/A	no	0.642	0.978	0.541	7e-53
Q6P8I6	275	Cytochrome c oxidase asse	yes	no	0.725	0.730	0.473	5e-51
A3KMZ6	282	Cytochrome c oxidase asse	yes	no	0.620	0.609	0.505	5e-50
Q9Y6N1	276	Cytochrome c oxidase asse	yes	no	0.682	0.684	0.473	1e-49
Q9UTM2	753	Rsm22-cox11 tandem protei	yes	no	0.772	0.284	0.449	2e-49
Q86ZU7	753	Rsm22-cox11 tandem protei	yes	no	0.754	0.277	0.472	3e-49
Q5R7U6	277	Cytochrome c oxidase asse	yes	no	0.667	0.667	0.473	2e-48
P19516	300	Cytochrome c oxidase asse	yes	no	0.624	0.576	0.494	1e-47
Q54HM6	312	Cytochrome c oxidase asse	yes	no	0.646	0.573	0.489	1e-46

>sp|Q8GWR0|COX11_ARATH Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Arabidopsis thaliana GN=COX11 PE=2 SV=1

 Score =  357 bits (916), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 168/195 (86%), Positives = 178/195 (91%)

Query: 81  FSSFQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKE 140
             S  R Y++H+ +E KS+KML YLTA+VF MVG TYAAVPLYR FCQATGYGGTVQRKE
Sbjct: 73  LDSAHRQYSTHSPSETKSQKMLYYLTAVVFGMVGLTYAAVPLYRTFCQATGYGGTVQRKE 132

Query: 141 TVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENR 200
           TVEEKIARHS+ GTVT RE+VVQFNADVADGM WKF PTQREVRVKPGESALAFYTAEN+
Sbjct: 133 TVEEKIARHSESGTVTEREIVVQFNADVADGMQWKFTPTQREVRVKPGESALAFYTAENK 192

Query: 201 SSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMD 260
           SS PITGVSTYNVTPMKA VYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMD
Sbjct: 193 SSAPITGVSTYNVTPMKAGVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMD 252

Query: 261 GINNLILSYTFFKVN 275
           GINNLILSYTFFKV+
Sbjct: 253 GINNLILSYTFFKVS 267

Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.
Arabidopsis thaliana (taxid: 3702)

>sp|O21243|COXZ_RECAM Cytochrome c oxidase assembly protein ctaG OS=Reclinomonas americana GN=CTAG PE=3 SV=1

 Score =  207 bits (527), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 98/181 (54%), Positives = 126/181 (69%), Gaps = 3/181 (1%)

Query: 97  KSRKMLLYLTALV-FAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTV 155
           K+RK +  L A V   M+G +Y +VPLYR FCQ TG+GGT Q  +   + +    KD   
Sbjct: 3   KNRKSIAILIAAVSITMIGFSYGSVPLYRIFCQVTGFGGTTQVADLESDILTL--KDEQQ 60

Query: 156 TTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTP 215
             R + V+FN DV+D MPWKF P Q+E++V  GE+ALAFY+AEN + + I G+STYNV P
Sbjct: 61  ENRIITVRFNGDVSDTMPWKFHPIQQEIKVMVGETALAFYSAENPTDSSIIGISTYNVNP 120

Query: 216 MKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKVN 275
            +A +YFNKIQCFCFEEQRL P E IDMPVFF+IDP    DP+M  I+++ LSYTFF V 
Sbjct: 121 QQAGIYFNKIQCFCFEEQRLKPHETIDMPVFFFIDPAILDDPKMSDIDSITLSYTFFNVE 180

Query: 276 E 276
           +
Sbjct: 181 D 181

Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.

Reclinomonas americana (taxid: 48483)

>sp|Q6P8I6|COX11_MOUSE Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Mus musculus GN=Cox11 PE=2 SV=1

 Score =  201 bits (511), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 108/228 (47%), Positives = 137/228 (60%), Gaps = 27/228 (11%)

Query: 54  CGYGSNMTNGYRKPQSFGSGCLWKSNSFSSFQRHYASHASTEQKSRKMLLYLTALVFAMV 113
           CG     T   R+P+S        SN F   QR  A      ++++ +L Y+ A    M+
Sbjct: 60  CGVRGPATQPPRRPRS--------SNPF---QR--AQEDEWRRRNKTVLTYVAAAAVGML 106

Query: 114 GSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGT-----VTTREVVVQFNADV 168
           G++YAAVPLYR +CQ TG GG+          +A HS D       V  R + V FNADV
Sbjct: 107 GASYAAVPLYRLYCQTTGLGGSA---------VAGHSSDQIENMVPVKDRVIKVTFNADV 157

Query: 169 ADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCF 228
              + W F P Q E+ V PGE+ALAFY A+N +  P+ G+STYNV P +A  YFNKIQCF
Sbjct: 158 HASLQWNFRPQQTEIYVVPGETALAFYKAKNPTDKPVIGISTYNVVPFEAGQYFNKIQCF 217

Query: 229 CFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKVNE 276
           CFEEQRL P E++DMPVFFYIDPEF  DPRM  ++ + LSYTFF+  E
Sbjct: 218 CFEEQRLNPQEEVDMPVFFYIDPEFAEDPRMVNVDLITLSYTFFEAKE 265

Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.

Mus musculus (taxid: 10090)

>sp|A3KMZ6|COX11_BOVIN Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Bos taurus GN=COX11 PE=2 SV=1

 Score =  197 bits (502), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 94/186 (50%), Positives = 123/186 (66%), Gaps = 14/186 (7%)

Query: 96  QKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGT- 154
           ++++ +L Y+ A    M+G++YAAVPLYR +CQ TG GG+          +A H+ D   
Sbjct: 85  RRNKTVLTYMAAAAVGMLGASYAAVPLYRLYCQTTGLGGSA---------VAGHASDQIE 135

Query: 155 ----VTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVST 210
               V  R + + FNADV   + W F P Q E+ V PGE+ALAFY A+N +  P+ G+ST
Sbjct: 136 NMVPVKDRIIKITFNADVHASLQWNFRPQQTEIYVVPGETALAFYKAKNPTDKPVIGIST 195

Query: 211 YNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYT 270
           YNV P +A  YFNKIQCFCFEEQRL P E++DMPVFFYIDPEF  DPRM  ++ + LSYT
Sbjct: 196 YNVVPFEAGQYFNKIQCFCFEEQRLNPQEEVDMPVFFYIDPEFAEDPRMVNVDLITLSYT 255

Query: 271 FFKVNE 276
           FF+  E
Sbjct: 256 FFEAKE 261

Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.

Bos taurus (taxid: 9913)

>sp|Q9Y6N1|COX11_HUMAN Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Homo sapiens GN=COX11 PE=1 SV=3

 Score =  196 bits (499), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/205 (47%), Positives = 129/205 (62%), Gaps = 16/205 (7%)

Query: 77  KSNSFSSFQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTV 136
           +  S + F R  A      ++++  L Y+ A+   M+G++YAAVPLYR +CQ TG GG+ 
Sbjct: 73  RPKSSNPFTR--AQEEERRRQNKTTLTYVAAVAVGMLGASYAAVPLYRLYCQTTGLGGSA 130

Query: 137 QRKETVEEKIARHSKDGT-----VTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESA 191
                    +A H+ D       V  R + + FNADV   + W F P Q E+ V PGE+A
Sbjct: 131 ---------VAGHASDKIENMVPVKDRIIKISFNADVHASLQWNFRPQQTEIYVVPGETA 181

Query: 192 LAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDP 251
           LAFY A+N +  P+ G+STYN+ P +A  YFNKIQCFCFEEQRL P E++DMPVFFYIDP
Sbjct: 182 LAFYRAKNPTDKPVIGISTYNIVPFEAGQYFNKIQCFCFEEQRLNPQEEVDMPVFFYIDP 241

Query: 252 EFETDPRMDGINNLILSYTFFKVNE 276
           EF  DPRM  ++ + LSYTFF+  E
Sbjct: 242 EFAEDPRMIKVDLITLSYTFFEAKE 266

Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.

Homo sapiens (taxid: 9606)

>sp|Q9UTM2|CO111_SCHPO Rsm22-cox11 tandem protein 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox1101 PE=1 SV=2

 Score =  196 bits (498), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 106/236 (44%), Positives = 141/236 (59%), Gaps = 22/236 (9%)

Query: 56  YGSNMTNGYRKPQSFGSG---CLWKSNSFSSFQ-----RHYASHASTEQ---KSRKMLLY 104
           Y +N    + +   F S    C++   SFS +      R Y+   S ++     R  + Y
Sbjct: 516 YSTNRHKAFSRFADFNSHRFPCIF--TSFSCYNCISGTRKYSRQYSRDKFHYNQRTTIYY 573

Query: 105 LTALVFAMVGSTYAAVPLYRRFCQATGYGGTV---QRKETVEEKIARHSKDGTVTTREVV 161
           L A+    +G TYAAVPLYR FC  TGYGGT+   Q +   E  + R  KD     + + 
Sbjct: 574 LVAISIFALGLTYAAVPLYRLFCSKTGYGGTLNTDQSRMNAERMVPR--KDN----KRIR 627

Query: 162 VQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVY 221
           V FN DVA  + WK  P QRE+ V PGE+AL FYTAEN S   I GV+TYN+ P +AAVY
Sbjct: 628 VTFNGDVAGNLSWKLWPQQREIYVLPGETALGFYTAENTSDHDIVGVATYNIVPGQAAVY 687

Query: 222 FNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKVNED 277
           F+K+ CFCFEEQ+L   E++D+PVFF+IDPEF  DP M  I++++LSYTFF+   D
Sbjct: 688 FSKVACFCFEEQKLDAHEKVDLPVFFFIDPEFADDPNMKDIDDILLSYTFFEARYD 743

Cox11-1 exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q86ZU7|CO112_SCHPO Rsm22-cox11 tandem protein 2, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cos1102 PE=1 SV=2

 Score =  195 bits (495), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 104/220 (47%), Positives = 133/220 (60%), Gaps = 11/220 (5%)

Query: 62  NGYRKPQSFGS-GCLWKSNSFSSFQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAV 120
           N +R P  F S  C    +   +  R Y S        R  + YL A+    +G TYAAV
Sbjct: 531 NSHRFPCIFTSFSCYNCISGTRNISRQY-SRDKFHYNQRTTIYYLVAISIFALGLTYAAV 589

Query: 121 PLYRRFCQATGYGGTV---QRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFI 177
           PLYR FC  TGYGGT+   Q +   E  + R  KD     + + V FN DVA  + WK  
Sbjct: 590 PLYRLFCSKTGYGGTLNTDQSRMNAERMVPR--KDN----KRIRVTFNGDVAGNLSWKLW 643

Query: 178 PTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLP 237
           P QRE+ V PGE+AL FYTAEN S   I GV+TYN+ P +AAVYF+K+ CFCFEEQ+L  
Sbjct: 644 PQQREIYVLPGETALGFYTAENTSDHDIVGVATYNIVPGQAAVYFSKVACFCFEEQKLDA 703

Query: 238 GEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKVNED 277
            E++D+PVFF+IDPEF  DP M  I++++LSYTFF+   D
Sbjct: 704 HEKVDLPVFFFIDPEFADDPNMKDIDDILLSYTFFEARYD 743

Cox11-2 exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5R7U6|COX11_PONAB Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Pongo abelii GN=COX11 PE=3 SV=2

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/205 (47%), Positives = 129/205 (62%), Gaps = 20/205 (9%)

Query: 78  SNSFSSFQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQ 137
           SN F+  Q+         ++++  L Y+ A+   M+G++YAAVPLYR +CQ TG GG+  
Sbjct: 77  SNPFTRAQKE-----EWRRRNKTTLTYVAAVAVGMLGASYAAVPLYRLYCQTTGLGGSA- 130

Query: 138 RKETVEEKIARHSKDGT-----VTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESAL 192
                   +A H+ D       V  R + + FNADV   + W F P Q E+ V PGE+AL
Sbjct: 131 --------VAGHASDKIENMVPVKDRIIKISFNADVHASLQWNFRPQQTEIYVVPGETAL 182

Query: 193 AFYTAENRSSTPITGVSTYNVTPMKAAVYFNKI-QCFCFEEQRLLPGEQIDMPVFFYIDP 251
           AFY A+N +  P+ G+STYN+ P +A  YFNKI QCFCFEEQRL P E++DMPVFFYIDP
Sbjct: 183 AFYRAKNPTDKPVIGISTYNIVPFEAGQYFNKIQQCFCFEEQRLNPQEEVDMPVFFYIDP 242

Query: 252 EFETDPRMDGINNLILSYTFFKVNE 276
           EF  DPRM  ++ + LSYTFF+  E
Sbjct: 243 EFAEDPRMIKVDLITLSYTFFEAKE 267

Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.

Pongo abelii (taxid: 9601)

>sp|P19516|COX11_YEAST Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COX11 PE=3 SV=2

 Score =  189 bits (481), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 90/182 (49%), Positives = 124/182 (68%), Gaps = 9/182 (4%)

Query: 97  KSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGG---TVQRKETVEEKIARHSKDG 153
           K R +  Y +++    +G  YAAVPLYR  C  TG+GG   T +RK T ++ I       
Sbjct: 81  KDRTVAFYFSSVAVLFLGLAYAAVPLYRAICARTGFGGIPITDRRKFTDDKLIP------ 134

Query: 154 TVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNV 213
             T + + + F ++V+  +PWKF+P QREV V PGE+ALAFY A+N S   I G++TY++
Sbjct: 135 VDTEKRIRISFTSEVSQILPWKFVPQQREVYVLPGETALAFYKAKNYSDKDIIGMATYSI 194

Query: 214 TPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFK 273
            P +AA YFNKIQCFCFEEQ+L  GE+IDMPVFF+IDP+F +DP M  I+++IL YTFF+
Sbjct: 195 APGEAAQYFNKIQCFCFEEQKLAAGEEIDMPVFFFIDPDFASDPAMRNIDDIILHYTFFR 254

Query: 274 VN 275
            +
Sbjct: 255 AH 256

Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q54HM6|COX11_DICDI Cytochrome c oxidase assembly protein COX11, mitochondrial OS=Dictyostelium discoideum GN=cox11 PE=3 SV=1

 Score =  186 bits (473), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/182 (48%), Positives = 121/182 (66%), Gaps = 3/182 (1%)

Query: 95  EQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGT 154
           ++K++ + LY+   +  ++G +YAAVPLYR FC+ATGYGGT +  +  +  I + + D T
Sbjct: 127 QEKNKAIGLYVLIAIIGILGLSYAAVPLYRIFCRATGYGGTTRDADDFD-VIRKRNLDRT 185

Query: 155 VTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVT 214
           V    + V F+A  A+ +PW F PTQ  +   PGE  L FY A N + TPI GV+TYN+T
Sbjct: 186 V--YPIKVTFSASTANKIPWTFKPTQSTIECLPGEPVLCFYRATNNTDTPIIGVATYNIT 243

Query: 215 PMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKV 274
           PMKA  YF KIQCFCF+EQR+   E IDMPV F I+PE   D  M G++++ LSYTFFK 
Sbjct: 244 PMKAGTYFTKIQCFCFDEQRINAHETIDMPVLFVIEPELLDDKNMKGVSDITLSYTFFKS 303

Query: 275 NE 276
           N+
Sbjct: 304 ND 305

Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
356569742	284	PREDICTED: cytochrome c oxidase assembly	0.978	0.954	0.688	1e-104
449458271	333	PREDICTED: cytochrome c oxidase assembly	0.729	0.606	0.837	8e-99
297843040	287	cytochrome c oxidase assembly protein Ct	0.703	0.679	0.866	8e-97
9857538	216	Similar to cytochrome-c oxidase assembly	0.703	0.902	0.861	2e-96
15217755	287	cytochrome c oxidase assembly protein Ct	0.703	0.679	0.861	3e-96
224053669	183	predicted protein [Populus trichocarpa]	0.660	1.0	0.907	3e-96
225454819	285	PREDICTED: cytochrome c oxidase assembly	0.974	0.947	0.627	1e-93
293331433	233	uncharacterized protein LOC100384526 [Ze	0.740	0.879	0.757	2e-92
108710775	244	Cytochrome c oxidase assembly protein ct	0.657	0.745	0.824	2e-90
149211385	259	avirulence protein-interacting protein [	0.657	0.702	0.824	2e-90

>gi|356569742|ref|XP_003553055.1| PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial-like [Glycine max]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/286 (68%), Positives = 225/286 (78%), Gaps = 15/286 (5%)

Query: 5   MSLSRLSSRTHILPLLQ-------QSRCVKDV-LWSNYKYTRVDTSCYASVWGLMPRCGY 56
           M  SRLS RTH+LP L+       +SRC+  +   S+YK+   +TS   +    +    +
Sbjct: 1   MIWSRLSRRTHLLPYLRALQTDSIESRCLSIIPKGSSYKFINPNTSFQHNFSCNIRLSKF 60

Query: 57  GSNMTNG-----YRKPQSFGSGCLWKSNSFSSFQRHYASHASTEQKSRKMLLYLTALVFA 111
              ++       YR   +  S  + KS S   F RH++SHAS EQKSRKMLLYLT LVFA
Sbjct: 61  KQELSTKPFHLCYRS-SALASQYVGKSCSMPGF-RHFSSHASKEQKSRKMLLYLTGLVFA 118

Query: 112 MVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADG 171
           MVG TYAAVPLYRRFCQATGYGGTV R+ETVEEKIARH  + TVTTRE+VVQFNAD+ADG
Sbjct: 119 MVGCTYAAVPLYRRFCQATGYGGTVTRRETVEEKIARHDSNNTVTTREIVVQFNADIADG 178

Query: 172 MPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFE 231
           M WKF+PTQREVRVKPGESALAFYTAEN+SSTPITGVSTYNVTPMKAAVYFNKIQCFCFE
Sbjct: 179 MQWKFVPTQREVRVKPGESALAFYTAENKSSTPITGVSTYNVTPMKAAVYFNKIQCFCFE 238

Query: 232 EQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKVNED 277
           EQRLLPGEQIDMPVFFYIDPEFETDP+M+GINN+ILSYTFFKV+E+
Sbjct: 239 EQRLLPGEQIDMPVFFYIDPEFETDPKMNGINNIILSYTFFKVSEE 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458271|ref|XP_004146871.1| PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial-like [Cucumis sativus] gi|449521983|ref|XP_004168008.1| PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial-like [Cucumis sativus]

 Score =  365 bits (938), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 170/203 (83%), Positives = 189/203 (93%), Gaps = 1/203 (0%)

Query: 75  LWKSNSFSSFQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGG 134
           + + +S  + QR Y++ A+ E+KS+ ML YL ALV  MVG +YAAVPLYRRFCQATGYGG
Sbjct: 132 IGRYSSLHNIQRSYST-AAIERKSKNMLFYLVALVLTMVGCSYAAVPLYRRFCQATGYGG 190

Query: 135 TVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAF 194
           TVQR+E+VEEKIARH+KDGTVTTR++VVQFNADVADGMPWKFIPTQREVRVKPGESALAF
Sbjct: 191 TVQRRESVEEKIARHAKDGTVTTRDIVVQFNADVADGMPWKFIPTQREVRVKPGESALAF 250

Query: 195 YTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFE 254
           YTAENRSSTPITGVSTYNVTPMKAA+YFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFE
Sbjct: 251 YTAENRSSTPITGVSTYNVTPMKAAIYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFE 310

Query: 255 TDPRMDGINNLILSYTFFKVNED 277
           TDP+MDGINNLILSYTFFKV+E+
Sbjct: 311 TDPKMDGINNLILSYTFFKVSEE 333

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843040|ref|XP_002889401.1| cytochrome c oxidase assembly protein CtaG [Arabidopsis lyrata subsp. lyrata] gi|297335243|gb|EFH65660.1| cytochrome c oxidase assembly protein CtaG [Arabidopsis lyrata subsp. lyrata]

 Score =  359 bits (921), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 169/195 (86%), Positives = 179/195 (91%)

Query: 83  SFQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETV 142
           S  R Y++ + TE KS+KML YLTA+VF MVG TYAAVPLYR FCQATGYGGTVQRKETV
Sbjct: 75  SAHRQYSTQSPTETKSQKMLYYLTAVVFGMVGLTYAAVPLYRTFCQATGYGGTVQRKETV 134

Query: 143 EEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSS 202
           EEKIARHS+ GTVT RE+VVQFNADVADGM WKF PTQREVRVKPGESALAFYTAEN+SS
Sbjct: 135 EEKIARHSESGTVTEREIVVQFNADVADGMQWKFTPTQREVRVKPGESALAFYTAENKSS 194

Query: 203 TPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGI 262
            PITGVSTYNVTPMKA VYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGI
Sbjct: 195 APITGVSTYNVTPMKAGVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGI 254

Query: 263 NNLILSYTFFKVNED 277
           NNLILSYTFFKV+E+
Sbjct: 255 NNLILSYTFFKVSEE 269

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9857538|gb|AAG00893.1|AC064879_11 Similar to cytochrome-c oxidase assembly protein [Arabidopsis thaliana]

 Score =  357 bits (917), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 168/195 (86%), Positives = 178/195 (91%)

Query: 81  FSSFQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKE 140
             S  R Y++H+ +E KS+KML YLTA+VF MVG TYAAVPLYR FCQATGYGGTVQRKE
Sbjct: 2   LDSAHRQYSTHSPSETKSQKMLYYLTAVVFGMVGLTYAAVPLYRTFCQATGYGGTVQRKE 61

Query: 141 TVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENR 200
           TVEEKIARHS+ GTVT RE+VVQFNADVADGM WKF PTQREVRVKPGESALAFYTAEN+
Sbjct: 62  TVEEKIARHSESGTVTEREIVVQFNADVADGMQWKFTPTQREVRVKPGESALAFYTAENK 121

Query: 201 SSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMD 260
           SS PITGVSTYNVTPMKA VYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMD
Sbjct: 122 SSAPITGVSTYNVTPMKAGVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMD 181

Query: 261 GINNLILSYTFFKVN 275
           GINNLILSYTFFKV+
Sbjct: 182 GINNLILSYTFFKVS 196

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217755|ref|NP_171743.1| cytochrome c oxidase assembly protein CtaG / Cox11 [Arabidopsis thaliana] gi|75151034|sp|Q8GWR0.1|COX11_ARATH RecName: Full=Cytochrome c oxidase assembly protein COX11, mitochondrial; Flags: Precursor gi|26452392|dbj|BAC43281.1| unknown protein [Arabidopsis thaliana] gi|28950841|gb|AAO63344.1| At1g02410 [Arabidopsis thaliana] gi|332189306|gb|AEE27427.1| cytochrome c oxidase assembly protein CtaG / Cox11 [Arabidopsis thaliana]

 Score =  357 bits (916), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 168/195 (86%), Positives = 178/195 (91%)

Query: 81  FSSFQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKE 140
             S  R Y++H+ +E KS+KML YLTA+VF MVG TYAAVPLYR FCQATGYGGTVQRKE
Sbjct: 73  LDSAHRQYSTHSPSETKSQKMLYYLTAVVFGMVGLTYAAVPLYRTFCQATGYGGTVQRKE 132

Query: 141 TVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENR 200
           TVEEKIARHS+ GTVT RE+VVQFNADVADGM WKF PTQREVRVKPGESALAFYTAEN+
Sbjct: 133 TVEEKIARHSESGTVTEREIVVQFNADVADGMQWKFTPTQREVRVKPGESALAFYTAENK 192

Query: 201 SSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMD 260
           SS PITGVSTYNVTPMKA VYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMD
Sbjct: 193 SSAPITGVSTYNVTPMKAGVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMD 252

Query: 261 GINNLILSYTFFKVN 275
           GINNLILSYTFFKV+
Sbjct: 253 GINNLILSYTFFKVS 267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053669|ref|XP_002297920.1| predicted protein [Populus trichocarpa] gi|222845178|gb|EEE82725.1| predicted protein [Populus trichocarpa]

 Score =  357 bits (916), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 166/183 (90%), Positives = 175/183 (95%)

Query: 95  EQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGT 154
           EQKS+K L+YLT LV AMVGSTYAAVPLYRRFCQATGYGGTVQR+E+VEEKIARH+ DGT
Sbjct: 1   EQKSKKTLIYLTGLVVAMVGSTYAAVPLYRRFCQATGYGGTVQRRESVEEKIARHANDGT 60

Query: 155 VTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVT 214
           V TRE+ VQFNADV DGMPWKF PTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVT
Sbjct: 61  VATREIAVQFNADVGDGMPWKFAPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVT 120

Query: 215 PMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKV 274
           PMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINN+ILSYTFFKV
Sbjct: 121 PMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNIILSYTFFKV 180

Query: 275 NED 277
           +E+
Sbjct: 181 SEE 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454819|ref|XP_002277478.1| PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Vitis vinifera] gi|297737337|emb|CBI26538.3| unnamed protein product [Vitis vinifera]

 Score =  348 bits (893), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 180/287 (62%), Positives = 214/287 (74%), Gaps = 17/287 (5%)

Query: 5   MSLSRLSSRTHILPLLQQS---------RCVKD-VLWSNYKYTRVDTSCYASVWGLMPRC 54
           MS  R+S +T +LP L+ S         R + D  + +N  Y + +  C   +  LM +C
Sbjct: 1   MSWFRVSRKTLLLPCLKNSQSPHFGSVSRHIPDKSIGANANYGQ-NLGCTNRL--LMQKC 57

Query: 55  GYGSNMTNGYRK--PQSFGSGCLWKSNSFSSFQRHYASHASTEQ--KSRKMLLYLTALVF 110
            + S + +  R+  P            S   F+RHY   AS EQ  KS+KML+YLTA+VF
Sbjct: 58  EFHSGLFDKRRQFSPVDLRYSGRPSYCSVLDFRRHYVVDASAEQARKSKKMLMYLTAVVF 117

Query: 111 AMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVAD 170
           AMV  +YAAVPLY+RFCQATGYGGTV R+ETVEEKIARH +DGT + RE+VVQFNADVAD
Sbjct: 118 AMVAGSYAAVPLYQRFCQATGYGGTVHRRETVEEKIARHDEDGTASLREIVVQFNADVAD 177

Query: 171 GMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCF 230
           GM WKFIPTQRE+RVKPGESALAFYTAEN+SSTPITGVSTYNVTPM+AA+YFNKIQCFCF
Sbjct: 178 GMQWKFIPTQREIRVKPGESALAFYTAENQSSTPITGVSTYNVTPMRAALYFNKIQCFCF 237

Query: 231 EEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKVNED 277
           EEQRLLPGEQIDMPVFFYIDPE E DP+MD + NL+LSYTFFK +E+
Sbjct: 238 EEQRLLPGEQIDMPVFFYIDPEIENDPKMDNVYNLVLSYTFFKSSEE 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|293331433|ref|NP_001170515.1| uncharacterized protein LOC100384526 [Zea mays] gi|195621262|gb|ACG32461.1| cytochrome c oxidase assembly protein ctaG [Zea mays] gi|238005800|gb|ACR33935.1| unknown [Zea mays] gi|414872495|tpg|DAA51052.1| TPA: cytochrome c oxidase assembly protein ctaG [Zea mays]

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 159/210 (75%), Positives = 182/210 (86%), Gaps = 5/210 (2%)

Query: 67  PQSFGSGCLWKSNSFSSFQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRF 126
           P +  +  LW+  + SS      S A  E+ SR+ L YL  +  AMVG++YAAVPLYRRF
Sbjct: 28  PPASDAAFLWRGLASSS-----PSAAGREKSSRRTLGYLLGVAVAMVGASYAAVPLYRRF 82

Query: 127 CQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVK 186
           CQATGYGGTVQR+E+VEEKI+RH++DGT T+RE++VQFNADVADGMPWKFIPTQREVRVK
Sbjct: 83  CQATGYGGTVQRRESVEEKISRHARDGTTTSREIIVQFNADVADGMPWKFIPTQREVRVK 142

Query: 187 PGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVF 246
           PGESALAFYTAENRSS PITGVSTYNV PMKAA+YFNKIQCFCFEEQ LLPGEQIDMPVF
Sbjct: 143 PGESALAFYTAENRSSAPITGVSTYNVAPMKAAIYFNKIQCFCFEEQTLLPGEQIDMPVF 202

Query: 247 FYIDPEFETDPRMDGINNLILSYTFFKVNE 276
           FYIDPEFETDP+MDG+NN++LSYTFFKVN+
Sbjct: 203 FYIDPEFETDPKMDGVNNIVLSYTFFKVND 232

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108710775|gb|ABF98570.1| Cytochrome c oxidase assembly protein ctaG, putative, expressed [Oryza sativa Japonica Group] gi|125545526|gb|EAY91665.1| hypothetical protein OsI_13305 [Oryza sativa Indica Group]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 150/182 (82%), Positives = 171/182 (93%)

Query: 95  EQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGT 154
           E+ SR+ L YL  +  AMVG++YAAVPLYRRFCQATGYGGTVQR+E+VEEKI+RH++DGT
Sbjct: 62  EKSSRRTLAYLLGVAAAMVGASYAAVPLYRRFCQATGYGGTVQRRESVEEKISRHARDGT 121

Query: 155 VTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVT 214
            T+RE++VQFNADVADGMPWKFIPTQREV+VKPGESALAFYTAENRSS PITGVSTYNV 
Sbjct: 122 TTSREIIVQFNADVADGMPWKFIPTQREVKVKPGESALAFYTAENRSSAPITGVSTYNVA 181

Query: 215 PMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKV 274
           PMKAA+YFNKIQCFCFEEQ LLPGEQIDMPVFFYIDPEFETDP+M+G+NN++LSYTFFKV
Sbjct: 182 PMKAAIYFNKIQCFCFEEQTLLPGEQIDMPVFFYIDPEFETDPKMEGVNNIVLSYTFFKV 241

Query: 275 NE 276
           N+
Sbjct: 242 ND 243

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|149211385|gb|ABR21990.1| avirulence protein-interacting protein [Oryza sativa Japonica Group]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 150/182 (82%), Positives = 171/182 (93%)

Query: 95  EQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGT 154
           E+ SR+ L YL  +  AMVG++YAAVPLYRRFCQATGYGGTVQR+E+VEEKI+RH++DGT
Sbjct: 62  EKSSRRTLAYLLGVAAAMVGASYAAVPLYRRFCQATGYGGTVQRRESVEEKISRHARDGT 121

Query: 155 VTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVT 214
            T+RE++VQFNADVADGMPWKFIPTQREV+VKPGESALAFYTAENRSS PITGVSTYNV 
Sbjct: 122 TTSREIIVQFNADVADGMPWKFIPTQREVKVKPGESALAFYTAENRSSAPITGVSTYNVA 181

Query: 215 PMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKV 274
           PMKAA+YFNKIQCFCFEEQ LLPGEQIDMPVFFYIDPEFETDP+M+G+NN++LSYTFFKV
Sbjct: 182 PMKAAIYFNKIQCFCFEEQTLLPGEQIDMPVFFYIDPEFETDPKMEGVNNIVLSYTFFKV 241

Query: 275 NE 276
           N+
Sbjct: 242 ND 243

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:2204838	287	AT1G02410 [Arabidopsis thalian	0.750	0.724	0.810	1.5e-90
UNIPROTKB|F1NAP0	222	COX11 "Uncharacterized protein	0.736	0.918	0.495	4.7e-48
ZFIN|ZDB-GENE-050506-82	259	cox11 "COX11 cytochrome c oxid	0.703	0.752	0.504	4.7e-48
FB|FBgn0051648	241	CG31648 [Drosophila melanogast	0.725	0.834	0.465	2.6e-47
MGI|MGI:1917052	275	Cox11 "cytochrome c oxidase as	0.682	0.687	0.492	2.6e-47
POMBASE|SPAC1420.04c	753	cox1101 "fusion cytochrome c o	0.750	0.276	0.479	6.4e-47
RGD|1309822	275	Cox11 "cytochrome c oxidase as	0.682	0.687	0.487	6.9e-47
POMBASE|SPAC19B12.13	753	cox1102 "fusion cytochrome c o	0.750	0.276	0.479	1.1e-46
WB|WBGene00010437	260	JC8.5 [Caenorhabditis elegans	0.620	0.661	0.517	1.4e-46
UNIPROTKB|F1RSF6	271	LOC100739503 "Uncharacterized	0.725	0.741	0.467	1.8e-46

TAIR|locus:2204838 AT1G02410 [Arabidopsis thaliana (taxid:3702)]

 Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
 Identities = 175/216 (81%), Positives = 187/216 (86%)

Query:    70 FGSGCLWKSNSFS--------SFQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVP 121
             +GS   W  NS S        S  R Y++H+ +E KS+KML YLTA+VF MVG TYAAVP
Sbjct:    54 WGSSSSWSLNSHSATAKSMLDSAHRQYSTHSPSETKSQKMLYYLTAVVFGMVGLTYAAVP 113

Query:   122 LYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQR 181
             LYR FCQATGYGGTVQRKETVEEKIARHS+ GTVT RE+VVQFNADVADGM WKF PTQR
Sbjct:   114 LYRTFCQATGYGGTVQRKETVEEKIARHSESGTVTEREIVVQFNADVADGMQWKFTPTQR 173

Query:   182 EVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQI 241
             EVRVKPGESALAFYTAEN+SS PITGVSTYNVTPMKA VYFNKIQCFCFEEQRLLPGEQI
Sbjct:   174 EVRVKPGESALAFYTAENKSSAPITGVSTYNVTPMKAGVYFNKIQCFCFEEQRLLPGEQI 233

Query:   242 DMPVFFYIDPEFETDPRMDGINNLILSYTFFKVNED 277
             DMPVFFYIDPEFETDPRMDGINNLILSYTFFKV+E+
Sbjct:   234 DMPVFFYIDPEFETDPRMDGINNLILSYTFFKVSEE 269

GO:0005507 "copper ion binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

UNIPROTKB|F1NAP0 COX11 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 106/214 (49%), Positives = 132/214 (61%)

Query:    63 GYRKPQSFGSGCLWKSNSFSSFQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPL 122
             G+  P+    G L  SN F+  Q          +++R  L Y+ A    MVG +YAAVPL
Sbjct:     9 GWTSPRLQARG-LRSSNPFTRRQEE-----EWRRRNRTALTYIAAAAVGMVGMSYAAVPL 62

Query:   123 YRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQRE 182
             YR +CQATG GGT       E    R  +   V  R + V FNADV  G+ W F P Q E
Sbjct:    63 YRLYCQATGLGGTTGAGRGAE----RLEEMRPVRERVLKVTFNADVHAGLQWNFRPQQSE 118

Query:   183 VRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQID 242
             + V PGE+ALAFY A+N +  PI G+STYNV P +A  YFNKIQCFCFEEQ L P E++D
Sbjct:   119 IYVVPGETALAFYKAKNPTDKPIIGISTYNVVPFEAGQYFNKIQCFCFEEQWLNPQEEVD 178

Query:   243 MPVFFYIDPEFETDPRMDGINNLILSYTFFKVNE 276
             MPVFFYIDPEF  DP+M  ++++ LSYTFF+  E
Sbjct:   179 MPVFFYIDPEFAEDPKMAKVDSITLSYTFFEAKE 212

GO:0005507 "copper ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-050506-82 cox11 "COX11 cytochrome c oxidase assembly homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 102/202 (50%), Positives = 130/202 (64%)

Query:    77 KSNSFSSFQRHYASHASTEQKSRKMLL-YLTALVFAMVGSTYAAVPLYRRFCQATGYGGT 135
             +S    + +R + S A   +K  K +L Y+ A    M+G +YAAVPLYR +CQATG GG 
Sbjct:    53 QSRGAKTHKRKHQSQADDWKKKNKTILTYIAAAGVGMIGMSYAAVPLYRLYCQATGLGGA 112

Query:   136 -VQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAF 194
              V   +T  E++A       V  R + V FNAD    + W F P Q E+ V PGE+ALAF
Sbjct:   113 AVAGHDT--EQVATMKP---VRDRIIKVTFNADTHASIQWNFRPQQSEIYVVPGETALAF 167

Query:   195 YTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFE 254
             Y A N +  P+ G+STYNV P +A  YFNKIQCFCFEEQRL P E++DMPVFFYIDPEF+
Sbjct:   168 YRARNPTDKPVIGISTYNVVPFEAGQYFNKIQCFCFEEQRLNPHEEVDMPVFFYIDPEFD 227

Query:   255 TDPRMDGINNLILSYTFFKVNE 276
              DPRM  ++ + LSYTFF+  E
Sbjct:   228 EDPRMARVDTITLSYTFFEAKE 249

GO:0005507 "copper ion binding" evidence=IEA

FB|FBgn0051648 CG31648 [Drosophila melanogaster (taxid:7227)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 100/215 (46%), Positives = 131/215 (60%)

Query:    62 NGYRKPQSFGSGCLWKSNSFSSFQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVP 121
             N   K Q F     W+  S  S        A+ + +++  L Y+TA    +VG +YAAVP
Sbjct:    24 NSVHKSQQF-----WRMKSTDS-----PEDAARKLRAKSTLYYITAGGVLIVGLSYAAVP 73

Query:   122 LYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQR 181
             LY  FCQA  YGGT  +    E+    H K   +  R + ++FNAD+   M W F P Q 
Sbjct:    74 LYSIFCQAYSYGGTTTQGHDAEK--VEHMKK--IEDRVLKIRFNADIGSSMRWNFKPQQY 129

Query:   182 EVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQI 241
             E++V PGE+ALAFYTA N +  P+ G+STYNV P +A  YFNKIQCFCFEEQ+L P E++
Sbjct:   130 EIKVAPGETALAFYTARNPTDKPVIGISTYNVIPFEAGAYFNKIQCFCFEEQQLNPHEEV 189

Query:   242 DMPVFFYIDPEFETDPRMDGINNLILSYTFFKVNE 276
             DMPVFFYIDPE   DP ++  + + LSYTFF+  E
Sbjct:   190 DMPVFFYIDPEITADPALETCDTITLSYTFFEAKE 224

GO:0008535 "respiratory chain complex IV assembly" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0005507 "copper ion binding" evidence=IEA

MGI|MGI:1917052 Cox11 "cytochrome c oxidase assembly protein 11" [Mus musculus (taxid:10090)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 101/205 (49%), Positives = 130/205 (63%)

Query:    77 KSNSFSSFQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTV 136
             +  S + FQR  A      ++++ +L Y+ A    M+G++YAAVPLYR +CQ TG GG+ 
Sbjct:    72 RPRSSNPFQR--AQEDEWRRRNKTVLTYVAAAAVGMLGASYAAVPLYRLYCQTTGLGGSA 129

Query:   137 QRKETVEEKIARHSKDGT-----VTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESA 191
                      +A HS D       V  R + V FNADV   + W F P Q E+ V PGE+A
Sbjct:   130 ---------VAGHSSDQIENMVPVKDRVIKVTFNADVHASLQWNFRPQQTEIYVVPGETA 180

Query:   192 LAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDP 251
             LAFY A+N +  P+ G+STYNV P +A  YFNKIQCFCFEEQRL P E++DMPVFFYIDP
Sbjct:   181 LAFYKAKNPTDKPVIGISTYNVVPFEAGQYFNKIQCFCFEEQRLNPQEEVDMPVFFYIDP 240

Query:   252 EFETDPRMDGINNLILSYTFFKVNE 276
             EF  DPRM  ++ + LSYTFF+  E
Sbjct:   241 EFAEDPRMVNVDLITLSYTFFEAKE 265

GO:0003674 "molecular_function" evidence=ND

GO:0005507 "copper ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

POMBASE|SPAC1420.04c cox1101 "fusion cytochrome c oxidase assembly protein Cox1101, mitochondrial ribosomal protein Rsm22 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 495 (179.3 bits), Expect = 6.4e-47, P = 6.4e-47
 Identities = 106/221 (47%), Positives = 136/221 (61%)

Query:    62 NGYRKPQSFGS-GCLWKSNSFSSFQRHYASHASTEQKSRKMLLYLTAL-VFAMVGSTYAA 119
             N +R P  F S  C    +    + R Y S        R  + YL A+ +FA+ G TYAA
Sbjct:   531 NSHRFPCIFTSFSCYNCISGTRKYSRQY-SRDKFHYNQRTTIYYLVAISIFAL-GLTYAA 588

Query:   120 VPLYRRFCQATGYGGTV---QRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKF 176
             VPLYR FC  TGYGGT+   Q +   E  + R  KD     + + V FN DVA  + WK 
Sbjct:   589 VPLYRLFCSKTGYGGTLNTDQSRMNAERMVPR--KDN----KRIRVTFNGDVAGNLSWKL 642

Query:   177 IPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLL 236
              P QRE+ V PGE+AL FYTAEN S   I GV+TYN+ P +AAVYF+K+ CFCFEEQ+L 
Sbjct:   643 WPQQREIYVLPGETALGFYTAENTSDHDIVGVATYNIVPGQAAVYFSKVACFCFEEQKLD 702

Query:   237 PGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKVNED 277
               E++D+PVFF+IDPEF  DP M  I++++LSYTFF+   D
Sbjct:   703 AHEKVDLPVFFFIDPEFADDPNMKDIDDILLSYTFFEARYD 743

GO:0005507 "copper ion binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISO

GO:0008168 "methyltransferase activity" evidence=ISM

GO:0008535 "respiratory chain complex IV assembly" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0031304 "intrinsic to mitochondrial inner membrane" evidence=IDA

GO:0032543 "mitochondrial translation" evidence=TAS

RGD|1309822 Cox11 "cytochrome c oxidase assembly homolog 11 (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 100/205 (48%), Positives = 130/205 (63%)

Query:    77 KSNSFSSFQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTV 136
             +  S + FQR  A      ++++ +L Y+ A    M+G++YAAVPLYR +CQ TG GG+ 
Sbjct:    72 RPKSSNPFQR--AQEDEWRRRNKTVLTYVAAAAVGMLGASYAAVPLYRLYCQTTGLGGSA 129

Query:   137 QRKETVEEKIARHSKDGT-----VTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESA 191
                      +A H+ D       V  R + V FNADV   + W F P Q E+ V PGE+A
Sbjct:   130 ---------VAGHASDQIENMVPVKDRIIKVTFNADVHASLQWNFRPQQTEIYVVPGETA 180

Query:   192 LAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDP 251
             LAFY A+N +  P+ G+STYNV P +A  YFNKIQCFCFEEQRL P E++DMPVFFYIDP
Sbjct:   181 LAFYKAKNPTDKPVIGISTYNVVPFEAGQYFNKIQCFCFEEQRLNPQEEVDMPVFFYIDP 240

Query:   252 EFETDPRMDGINNLILSYTFFKVNE 276
             EF  DPRM  ++ + LSYTFF+  E
Sbjct:   241 EFAEDPRMVNVDLITLSYTFFEAKE 265

GO:0003674 "molecular_function" evidence=ND

GO:0005507 "copper ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0008150 "biological_process" evidence=ND

POMBASE|SPAC19B12.13 cox1102 "fusion cytochrome c oxidase assembly protein Cox1102, mitochondrial ribosomal protein Rsm2202, fusion protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 493 (178.6 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 106/221 (47%), Positives = 136/221 (61%)

Query:    62 NGYRKPQSFGS-GCLWKSNSFSSFQRHYASHASTEQKSRKMLLYLTAL-VFAMVGSTYAA 119
             N +R P  F S  C    +   +  R Y S        R  + YL A+ +FA+ G TYAA
Sbjct:   531 NSHRFPCIFTSFSCYNCISGTRNISRQY-SRDKFHYNQRTTIYYLVAISIFAL-GLTYAA 588

Query:   120 VPLYRRFCQATGYGGTV---QRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKF 176
             VPLYR FC  TGYGGT+   Q +   E  + R  KD     + + V FN DVA  + WK 
Sbjct:   589 VPLYRLFCSKTGYGGTLNTDQSRMNAERMVPR--KDN----KRIRVTFNGDVAGNLSWKL 642

Query:   177 IPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLL 236
              P QRE+ V PGE+AL FYTAEN S   I GV+TYN+ P +AAVYF+K+ CFCFEEQ+L 
Sbjct:   643 WPQQREIYVLPGETALGFYTAENTSDHDIVGVATYNIVPGQAAVYFSKVACFCFEEQKLD 702

Query:   237 PGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKVNED 277
               E++D+PVFF+IDPEF  DP M  I++++LSYTFF+   D
Sbjct:   703 AHEKVDLPVFFFIDPEFADDPNMKDIDDILLSYTFFEARYD 743

GO:0005507 "copper ion binding" evidence=ISO

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISO

GO:0008168 "methyltransferase activity" evidence=ISM

GO:0008535 "respiratory chain complex IV assembly" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0031304 "intrinsic to mitochondrial inner membrane" evidence=ISS

GO:0032543 "mitochondrial translation" evidence=NAS

WB|WBGene00010437 JC8.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 91/176 (51%), Positives = 123/176 (69%)

Query:    98 SRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTT 157
             +R    Y+ +LV   +G T+AA+P YR FC+ T +GG  Q  +  + KIA   K      
Sbjct:    58 TRNYTYYVMSLVIVAIGCTFAAIPAYRIFCEQTSFGGLTQVAKDFD-KIANMKK---CED 113

Query:   158 REVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMK 217
             R + VQFN+DV   M W+F P Q E+ V PGE+ALAFYTA N +  PI G+S+YN+TP +
Sbjct:   114 RLIRVQFNSDVPSSMRWEFKPQQHEIYVHPGETALAFYTARNPTDKPIIGISSYNLTPFQ 173

Query:   218 AAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFK 273
             AA YFNKIQCFCFEEQ L PGEQ+D+PVFFYIDP++  DP ++ +++++LSYTFF+
Sbjct:   174 AAYYFNKIQCFCFEEQILNPGEQVDLPVFFYIDPDYVNDPALEYLDSILLSYTFFE 229

GO:0005507 "copper ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

UNIPROTKB|F1RSF6 LOC100739503 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 102/218 (46%), Positives = 134/218 (61%)

Query:    64 YRKPQSFGSGCLWKSNSFSSFQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLY 123
             +R+P S     L +  S + F R         ++++ +L Y+ A    M+G++YAAVPLY
Sbjct:    56 WRRP-SLAVQPLRRPKSTNPFTRE--QEEDWRRRNKTVLTYVAAAAVGMLGASYAAVPLY 112

Query:   124 RRFCQATGYGGTVQRKETVEEKIARHSKDGT-----VTTREVVVQFNADVADGMPWKFIP 178
             R +CQ TG GG+          +A H+ D       V  R + V FNADV   + W F P
Sbjct:   113 RLYCQTTGLGGSA---------VAGHASDQIENMVPVKDRIIKVTFNADVHASLQWNFRP 163

Query:   179 TQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPG 238
              Q E+ V PGE+ALAFY A+N +  P+ G+STYNV P +A  YFNKIQCFCFEEQRL P 
Sbjct:   164 QQTEIYVVPGETALAFYKAKNPTDKPVIGISTYNVVPFEAGQYFNKIQCFCFEEQRLNPQ 223

Query:   239 EQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKVNE 276
             E++DMPVFFYIDPEF  DPRM  ++ + LSYTFF+  E
Sbjct:   224 EEVDMPVFFYIDPEFAEDPRMVNVDLITLSYTFFEAKE 261

GO:0005507 "copper ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GWR0	COX11_ARATH	No assigned EC number	0.8615	0.7039	0.6794	yes	no
A3KMZ6	COX11_BOVIN	No assigned EC number	0.5053	0.6209	0.6099	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	277
pfam04442	150	pfam04442, CtaG_Cox11, Cytochrome c oxidase assemb	1e-87
COG3175	195	COG3175, COX11, Cytochrome oxidase assembly factor	2e-83
PTZ00128	232	PTZ00128, PTZ00128, cytochrome c oxidase assembly	2e-83
PRK05089	188	PRK05089, PRK05089, cytochrome C oxidase assembly	4e-82

>gnl|CDD|218089 pfam04442, CtaG_Cox11, Cytochrome c oxidase assembly protein CtaG/Cox11

 Score =  257 bits (658), Expect = 1e-87
 Identities = 79/155 (50%), Positives = 100/155 (64%), Gaps = 5/155 (3%)

Query: 119 AVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIP 178
            VPLY  FC+ TG  GT QR     EKI +         R + V+F+A+V  G+PW+F P
Sbjct: 1   LVPLYDVFCEVTGINGTTQRAAAAAEKILQVDTS-----RTITVRFDANVNGGLPWEFKP 55

Query: 179 TQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPG 238
            QREV V PGE+ALAFY A+N S  PI G +  +VTP +A  YFNKI+CFCF +Q L PG
Sbjct: 56  EQREVTVHPGETALAFYEAKNPSDRPIVGQAVPSVTPGQAGAYFNKIECFCFTQQTLQPG 115

Query: 239 EQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFK 273
           E+++MPV FYIDPE   DP +  +  + LSYTFF 
Sbjct: 116 EEVEMPVVFYIDPELPEDPELKDVKTITLSYTFFD 150

Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units. The C terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae. Met 224 is also thought to play a role in copper transfer or stabilising the copper site. Length = 150

>gnl|CDD|225716 COG3175, COX11, Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]

 Score =  248 bits (634), Expect = 2e-83
 Identities = 93/188 (49%), Positives = 124/188 (65%), Gaps = 8/188 (4%)

Query: 90  SHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARH 149
           + A+ +  +R +  YL A+   M+G  YAAVPLY+ FC+ TGYGGT QR E         
Sbjct: 2   ARAAEKVSNRTLAGYLLAVFVGMIGLAYAAVPLYKLFCRVTGYGGTTQRDEV-------- 53

Query: 150 SKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVS 209
               T   + + V+F+A+VA+G+PW+F P QREV V+PGE+ L FY AEN S  PITG +
Sbjct: 54  QYSDTQLDKTITVEFDANVANGLPWRFRPVQREVYVRPGETNLIFYEAENLSDKPITGQA 113

Query: 210 TYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSY 269
           TYNV P +A  YFNK++CFCF EQ L PGE ++MPV F++DP+F  DP M  +  + LSY
Sbjct: 114 TYNVAPGQAGAYFNKVECFCFTEQTLKPGETVEMPVVFFVDPDFADDPEMKDVKTITLSY 173

Query: 270 TFFKVNED 277
           TFF + ED
Sbjct: 174 TFFPIRED 181

Length = 195

>gnl|CDD|185464 PTZ00128, PTZ00128, cytochrome c oxidase assembly protein-like; Provisional

 Score =  249 bits (638), Expect = 2e-83
 Identities = 99/226 (43%), Positives = 130/226 (57%), Gaps = 13/226 (5%)

Query: 57  GSNMTNGYRKPQSFGSGCLWKSNSFSSFQRHYASHAS----TEQKSRK-MLLYLTALVFA 111
               T               KS  F SF+    S         +K R     Y  +L  A
Sbjct: 9   SLPTTTPPTSD--NRGSSANKSELFRSFKHSKNSGKENELKKFKKERGQFFYYNLSLYIA 66

Query: 112 MVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADG 171
           M G ++A VPLYR FCQ+TGYGG   +K+   +K     K      R + ++F AD    
Sbjct: 67  MFGCSFAFVPLYRLFCQSTGYGGDADKKDYSMKKKYPVPK------RLIKIRFLADTGST 120

Query: 172 MPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFE 231
           MPW+F P Q+EV V PGE+ALAFY A+NRS  P+ GV+TY++ P +A +YFNKIQCFCFE
Sbjct: 121 MPWEFEPLQKEVEVLPGETALAFYRAKNRSDKPVIGVATYHIAPPEAGLYFNKIQCFCFE 180

Query: 232 EQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKVNED 277
           EQRL P E++DMPVFFYIDP+   DPR+  ++ + LSYTFF+   +
Sbjct: 181 EQRLNPHEEVDMPVFFYIDPDILNDPRLKWVDEITLSYTFFEAESE 226

Length = 232

>gnl|CDD|235341 PRK05089, PRK05089, cytochrome C oxidase assembly protein; Provisional

 Score =  244 bits (625), Expect = 4e-82
 Identities = 78/189 (41%), Positives = 105/189 (55%), Gaps = 12/189 (6%)

Query: 89  ASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIAR 148
            S  + ++ +R+++  L  +V  M G  +A VPLY  FC+ TG  GT Q           
Sbjct: 1   MSAMAQKRSNRRLVFKLLLVVVGMFGFGFALVPLYDVFCEVTGINGTTQAARVEAA---- 56

Query: 149 HSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGV 208
                   +R + V+F+A+V  G+PW+F P QR V V PGE  L FY AEN S  PI G 
Sbjct: 57  ---SQVDLSRTITVEFDANVNGGLPWEFKPEQRSVDVHPGELNLVFYEAENLSDRPIVGQ 113

Query: 209 STYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILS 268
           +  +VTP +A  YFNKI+CFCF +Q L PGE  +MPV FY+DP+   D     +  + LS
Sbjct: 114 AIPSVTPGQAGAYFNKIECFCFTQQTLQPGETREMPVVFYVDPDLPKD-----VKTITLS 168

Query: 269 YTFFKVNED 277
           YTFF V   
Sbjct: 169 YTFFDVTAP 177

Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
PTZ00128	232	cytochrome c oxidase assembly protein-like; Provis	100.0
PRK05089	188	cytochrome C oxidase assembly protein; Provisional	100.0
COG3175	195	COX11 Cytochrome oxidase assembly factor [Posttran	100.0
KOG2540	269	consensus Cytochrome oxidase assembly factor COX11	100.0
PF04442	152	CtaG_Cox11: Cytochrome c oxidase assembly protein	100.0
PF14874	102	PapD-like: Flagellar-associated PapD-like	86.81
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	83.72

>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional

Probab=100.00  E-value=2.4e-81  Score=566.77  Aligned_cols=179  Identities=50%  Similarity=0.952  Sum_probs=167.8

Q ss_pred             chhhhhhHHHHHHHHHHHHHHHhheechhhHHHHHHHhcCCceeeeehhhHHHHhhccCCCcccccEEEEEEEecCCCCC
Q 023783           93 STEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGM  172 (277)
Q Consensus        93 ~~~~~n~~~~~~l~~v~v~Mfgf~fA~VPLY~~FC~vTG~~Gtt~~~~~~~~~~~~~~~~~vd~~R~I~V~F~A~v~~~l  172 (277)
                      ...++|++++++|++++++|||||||+|||||+||++|||||||++++...      ....++.+|+|+|+|||+++++|
T Consensus        48 ~~~~~~~~~~~~l~~~~v~Mfgf~fA~VPLY~~fC~~TG~~Gtt~~~~~~~------~~~~~~~~R~I~V~F~a~v~~~l  121 (232)
T PTZ00128         48 KFKKERGQFFYYNLSLYIAMFGCSFAFVPLYRLFCQSTGYGGDADKKDYSM------KKKYPVPKRLIKIRFLADTGSTM  121 (232)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcccccccccc------ccccccCceEEEEEEeccCCCCC
Confidence            445668899999999999999999999999999999999999998865321      12357899999999999999999


Q ss_pred             CeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEeccEEEEeCCC
Q 023783          173 PWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPE  252 (277)
Q Consensus       173 PW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPe  252 (277)
                      ||+|+|+|++|+|||||+++++|+|+|++|++|+|||+|||+|++||.||||||||||+||+|+|||++||||+||||||
T Consensus       122 pW~F~P~q~~v~V~pGE~~lv~Y~a~N~sd~~i~G~A~ynV~P~~Ag~YFnKieCFCF~eQ~L~pgE~~~MPV~F~IDP~  201 (232)
T PTZ00128        122 PWEFEPLQKEVEVLPGETALAFYRAKNRSDKPVIGVATYHIAPPEAGLYFNKIQCFCFEEQRLNPHEEVDMPVFFYIDPD  201 (232)
T ss_pred             CceEEeeeeEEEEcCCCeEEEEEEEECCCCCcEEEEEecccCHHHHhhhccceeeecccccccCCCCeEecCEEEEECCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCCCCCcEEEEEEEeeecCCC
Q 023783          253 FETDPRMDGINNLILSYTFFKVNED  277 (277)
Q Consensus       253 i~~Dp~~~~v~tITLSYTFF~~~~~  277 (277)
                      |++||++++|++||||||||+++++
T Consensus       202 i~~D~~~~~v~~ITLSYTFF~~~~~  226 (232)
T PTZ00128        202 ILNDPRLKWVDEITLSYTFFEAESE  226 (232)
T ss_pred             CCCCcccCCcCEEEEEEEEEecCCC
Confidence            9999999999999999999999754

>PRK05089 cytochrome C oxidase assembly protein; Provisional

Probab=100.00  E-value=1.4e-80  Score=547.64  Aligned_cols=172  Identities=45%  Similarity=0.856  Sum_probs=161.7

Q ss_pred             chhhhhhHHHHHHHHHHHHHHHhheechhhHHHHHHHhcCCceeeeehhhHHHHhhccCCCcccccEEEEEEEecCCCCC
Q 023783           93 STEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGM  172 (277)
Q Consensus        93 ~~~~~n~~~~~~l~~v~v~Mfgf~fA~VPLY~~FC~vTG~~Gtt~~~~~~~~~~~~~~~~~vd~~R~I~V~F~A~v~~~l  172 (277)
                      ..+++|++++++|++++++|||||||+|||||+||++|||||||+.+...       ....+|.+|+|+|+|||+++++|
T Consensus         5 ~~~~~n~~~~~~l~~~~~~Mfgf~fA~VPLY~~fC~~TG~~G~t~~~~~~-------~~~~~~~~R~I~V~F~a~~~~~l   77 (188)
T PRK05089          5 AQKRSNRRLVFKLLLVVVGMFGFGFALVPLYDVFCEVTGINGTTQAARVE-------AASQVDLSRTITVEFDANVNGGL   77 (188)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhCCCceecccccc-------ccCcccCCcEEEEEEeccCCCCC
Confidence            34567899999999999999999999999999999999999999863221       12358899999999999999999


Q ss_pred             CeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEeccEEEEeCCC
Q 023783          173 PWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPE  252 (277)
Q Consensus       173 PW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPe  252 (277)
                      ||+|+|+|++|+|||||+++++|+|+|++|++|+|||+|||+|.+||.||||||||||+||+|+|||++||||+||||||
T Consensus        78 pW~F~P~q~~v~V~pGE~~~~~y~a~N~sd~~i~g~A~~nV~P~~a~~YF~KieCFCF~eQ~L~pgE~~~mPV~F~IDP~  157 (188)
T PRK05089         78 PWEFKPEQRSVDVHPGELNLVFYEAENLSDRPIVGQAIPSVTPGQAGAYFNKIECFCFTQQTLQPGETREMPVVFYVDPD  157 (188)
T ss_pred             CceEEeeeeEEEEcCCCeEEEEEEEECCCCCcEEEEEecccCHHHHhhhccceeeecccCcccCCCCeEecCEEEEECCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcCCCCCcEEEEEEEeeecCC
Q 023783          253 FETDPRMDGINNLILSYTFFKVNE  276 (277)
Q Consensus       253 i~~Dp~~~~v~tITLSYTFF~~~~  276 (277)
                      |++|     |++||||||||++++
T Consensus       158 i~~d-----v~~iTLSYTff~~~~  176 (188)
T PRK05089        158 LPKD-----VKTITLSYTFFDVTA  176 (188)
T ss_pred             cccc-----cCEEEEEEEEEecCC
Confidence            9997     999999999999875

>COG3175 COX11 Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4e-80  Score=541.37  Aligned_cols=173  Identities=53%  Similarity=1.025  Sum_probs=163.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhheechhhHHHHHHHhcCCceeeeehh-hHHHHhhccCCCcccccEEEEEEEecCCCCCC
Q 023783           95 EQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKET-VEEKIARHSKDGTVTTREVVVQFNADVADGMP  173 (277)
Q Consensus        95 ~~~n~~~~~~l~~v~v~Mfgf~fA~VPLY~~FC~vTG~~Gtt~~~~~-~~~~~~~~~~~~vd~~R~I~V~F~A~v~~~lP  173 (277)
                      +.+||+++.+|++++++|+|++||+||||++||++|||||||++.+. ..+         ...+|+|+|+||||++.+||
T Consensus         7 k~snr~~a~~~l~~~v~Mig~ayAaVPLY~lfC~vTGygGtt~r~~~~~~~---------~~ldk~I~V~Fdanv~~~lp   77 (195)
T COG3175           7 KVSNRTLAGYLLAVFVGMIGLAYAAVPLYKLFCRVTGYGGTTQRDEVQYSD---------TQLDKTITVEFDANVANGLP   77 (195)
T ss_pred             cccchhhhHhHHHHHHHHHHHHHhhhhHHHHHhhhhccCCEeeehhhhccc---------ceeeEEEEEEEccccCCCCc
Confidence            34689999999999999999999999999999999999999998762 211         23459999999999999999


Q ss_pred             eEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEeccEEEEeCCCC
Q 023783          174 WKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEF  253 (277)
Q Consensus       174 W~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPei  253 (277)
                      |+|+|.|++|.|||||+++++|+|+|++|+||+|||+|||+|++||.||||||||||+||+|+|||++||||+||||||+
T Consensus        78 W~F~p~q~~v~v~pGet~~~~y~a~N~sd~~itg~A~~nv~P~~Ag~YF~KveCFCFteq~L~pgE~vemPV~FfVDpd~  157 (195)
T COG3175          78 WRFRPVQREVYVRPGETNLIFYEAENLSDKPITGQATYNVAPGQAGAYFNKVECFCFTEQTLKPGETVEMPVVFFVDPDF  157 (195)
T ss_pred             eeeEecCceeEeccCceEEEEEEEecCCCCCceeEEecccChhHhhhheeeeeEEEeeecccCCCCeEeccEEEEECccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCCCCcEEEEEEEeeecCC
Q 023783          254 ETDPRMDGINNLILSYTFFKVNE  276 (277)
Q Consensus       254 ~~Dp~~~~v~tITLSYTFF~~~~  276 (277)
                      .+||+|+||++||||||||++.+
T Consensus       158 ~~dPe~kdvk~iTLSYTFF~~~~  180 (195)
T COG3175         158 ADDPEMKDVKTITLSYTFFPIRE  180 (195)
T ss_pred             ccCcccCCCCeEEEEEEEEEccc
Confidence            99999999999999999999754

>KOG2540 consensus Cytochrome oxidase assembly factor COX11 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.5e-76  Score=527.50  Aligned_cols=250  Identities=55%  Similarity=0.860  Sum_probs=202.4

Q ss_pred             ceeeecccccchhhhhhhcccccccccCCceeeecCCccccccccccccccCCCCCCCCcccccccCccccccccCcchh
Q 023783            5 MSLSRLSSRTHILPLLQQSRCVKDVLWSNYKYTRVDTSCYASVWGLMPRCGYGSNMTNGYRKPQSFGSGCLWKSNSFSSF   84 (277)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~   84 (277)
                      |.|.-.+| +.+.++.-+++.-.-.  .+ -++-....|.+  +-|..+-- ++      -.++++.-      .|+..-
T Consensus         1 ~~~c~a~r-~ri~~~g~n~r~~s~~--~p-~l~~r~g~~k~--~~lrs~~~-~s------~~~~s~~~------~s~~~~   61 (269)
T KOG2540|consen    1 MSWCKACR-TRISSYGENLRRTSQY--PP-ILCSRHGACKS--HYLRSKRV-GS------LNSHSATA------KSMLDA   61 (269)
T ss_pred             Ccccchhe-eeccCCCCcccchhcc--Cc-chhhhhhhhhh--hhhhheec-cc------ccchhhcc------cchhhh
Confidence            56777777 8888888777633221  11 12222344555  33333222 11      11111111      123233


Q ss_pred             hhhcccccchhhhhhHHHHHHHHHHHHHHHhheechhhHHHHHHHhcCCceeeeehhhHHHHhhccCCCcccccEEEEEE
Q 023783           85 QRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQF  164 (277)
Q Consensus        85 ~R~~~~~~~~~~~n~~~~~~l~~v~v~Mfgf~fA~VPLY~~FC~vTG~~Gtt~~~~~~~~~~~~~~~~~vd~~R~I~V~F  164 (277)
                      -|.|+.++.++.++++++.|+.+++++|+|++||+||||++||+.|||||+++..+..-+   .+...+.+.+|.|+|+|
T Consensus        62 ~rqysr~~er~~k~rttlyYl~av~i~~lGltyAAvPlYR~fC~~Tg~GG~~~T~~~~~~---~~~~~~~~~~r~Irv~F  138 (269)
T KOG2540|consen   62 HRQYSRHSERETKSRTTLYYLTAVVIGALGLTYAAVPLYRLFCQATGYGGTVQTVEEKFD---KISNMPTVTERRIRVQF  138 (269)
T ss_pred             hhhhhhhchhhhccceeeeehHHHHHHHhhhhhhhhHHHHHHHhhcCCCCchhhhhhhhh---hhhcCCcccceEEEEEe
Confidence            477888887888899999999999999999999999999999999999999985443322   22345788999999999


Q ss_pred             EecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEecc
Q 023783          165 NADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMP  244 (277)
Q Consensus       165 ~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMP  244 (277)
                      +++++.+|+|+|.|+|++|.|+|||++++||+|+|+||+||+|+|+||++|++||.|||||||||||||.|.|||++|||
T Consensus       139 n~dV~~~l~Wkf~PqQrEiyV~PGEtALaFYta~N~sdkpIiGvstYni~P~~Aa~YFnKiqCFCFEEQ~L~pgE~vDmP  218 (269)
T KOG2540|consen  139 NSDVADSLQWKFTPQQREIYVLPGETALAFYTAENPSDKPIIGVSTYNITPGQAAVYFNKIQCFCFEEQKLNPGEQVDMP  218 (269)
T ss_pred             cccccccCcccccccceEEEEcCCcceeeeEeccCCCCCCceeeEeeccCccHhhhheeceeEEeehhhccCCCcccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCcCCCCCcEEEEEEEeeecCC
Q 023783          245 VFFYIDPEFETDPRMDGINNLILSYTFFKVNE  276 (277)
Q Consensus       245 V~F~IDPei~~Dp~~~~v~tITLSYTFF~~~~  276 (277)
                      |+||||||+.+||+|++|++|+||||||+++.
T Consensus       219 VFFyIDPefa~DP~m~~id~i~LsYTFFea~~  250 (269)
T KOG2540|consen  219 VFFYIDPEFATDPAMDGIDDILLSYTFFEAKY  250 (269)
T ss_pred             eEEEeCcccccCcccccccceEEEEEEEEeec
Confidence            99999999999999999999999999999875

>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein

Probab=100.00  E-value=8.2e-75  Score=496.73  Aligned_cols=151  Identities=54%  Similarity=1.011  Sum_probs=93.3

Q ss_pred             chhhHHHHHHHhcCCceeeee-hhhHHHHhhccCCCcccccEEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEE
Q 023783          119 AVPLYRRFCQATGYGGTVQRK-ETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTA  197 (277)
Q Consensus       119 ~VPLY~~FC~vTG~~Gtt~~~-~~~~~~~~~~~~~~vd~~R~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a  197 (277)
                      +|||||+||++|||||||+.+ +..+.     ...+++.+|+|+|+|+|+++++|||+|+|+|++|.|||||+++++|+|
T Consensus         1 ~VPLY~~fC~vTG~~Gtt~~~~~~~~~-----~~~~v~~~R~i~V~F~a~~~~~lpW~F~P~q~~v~V~pGe~~~~~y~a   75 (152)
T PF04442_consen    1 LVPLYDVFCEVTGFNGTTQRAAEAAAA-----AAKQVDTSRTITVRFDANVNPGLPWEFKPEQRSVKVHPGETALVFYEA   75 (152)
T ss_dssp             -------------------------TT-----T------S-EEEEEEEEEE-TTS-EEEE-S-SEEEEETT--EEEEEEE
T ss_pred             CCchHHHHHHHhCCCCEeCcccccccc-----ccccccCCcEEEEEEEeecCCCCceEEEeeeeeEEeCCCCEEEEEEEE
Confidence            699999999999999999883 22111     123578999999999999999999999999999999999999999999


Q ss_pred             EcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEeccEEEEeCCCCCCCcCCCCCcEEEEEEEeeec
Q 023783          198 ENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKV  274 (277)
Q Consensus       198 ~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPei~~Dp~~~~v~tITLSYTFF~~  274 (277)
                      +|++|++|+|||+|||+|++||.||||||||||+||+|+|||++||||+|||||||++||++++|++||||||||++
T Consensus        76 ~N~s~~~i~g~A~~nV~P~~a~~YF~KieCFCF~eQ~L~pgE~~~mPv~F~IDp~i~~d~~~~~v~~iTLSYTff~v  152 (152)
T PF04442_consen   76 TNPSDKPITGQAIPNVTPGEAGKYFNKIECFCFEEQTLAPGETVDMPVVFYIDPDIPEDPDMKDVKTITLSYTFFDV  152 (152)
T ss_dssp             EE-SSS-EE---EEEE-SSS-STTECCS-TTS-S--EE-TT-EEEEEEEEEE-GGGGSSTTTTT--BEEEEEEE-S-
T ss_pred             ECCCCCcEEEEEeeeECHHHhhhhccccceEeccCcCcCCCCeEEEEEEEEECCcccCCcccCCcCEEEEEEEeecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999986

In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=86.81  E-value=1.9  Score=33.32  Aligned_cols=57  Identities=26%  Similarity=0.333  Sum_probs=42.1

Q ss_pred             EecCCCeeEEEEEEEcCCCCceEEEEeCcccccc-hhccccccccccccccccCCCCeEeccEEEE
Q 023783          184 RVKPGESALAFYTAENRSSTPITGVSTYNVTPMK-AAVYFNKIQCFCFEEQRLLPGEQIDMPVFFY  248 (277)
Q Consensus       184 ~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~-Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~  248 (277)
                      .|..|+.....-.++|.+..+.    -|.|.... -...|   .+- ..+..|+||+++++-|.|.
T Consensus        15 ~v~~g~~~~~~v~l~N~s~~p~----~f~v~~~~~~~~~~---~v~-~~~g~l~PG~~~~~~V~~~   72 (102)
T PF14874_consen   15 NVFVGQTYSRTVTLTNTSSIPA----RFRVRQPESLSSFF---SVE-PPSGFLAPGESVELEVTFS   72 (102)
T ss_pred             EEccCCEEEEEEEEEECCCCCE----EEEEEeCCcCCCCE---EEE-CCCCEECCCCEEEEEEEEE
Confidence            5789999999999999999984    44443322 22222   222 2478999999999999998

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=83.72  E-value=1.4  Score=33.05  Aligned_cols=62  Identities=24%  Similarity=0.380  Sum_probs=32.5

Q ss_pred             ecCCCeeEEEEEEEcCCCCceEEEEe-Ccccccchh--ccccccccccccccccCCCCeEeccEEEEeCCCCC
Q 023783          185 VKPGESALAFYTAENRSSTPITGVST-YNVTPMKAA--VYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFE  254 (277)
Q Consensus       185 V~PGE~~l~fY~a~N~sd~pi~GqAv-ynVtP~~Ag--~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPei~  254 (277)
                      |.|||...+...++|..+.++....+ -++ |.--.  ..=..+.       .|.|||++..-+..-+..+..
T Consensus         1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-P~GW~~~~~~~~~~-------~l~pG~s~~~~~~V~vp~~a~   65 (78)
T PF10633_consen    1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSL-PEGWTVSASPASVP-------SLPPGESVTVTFTVTVPADAA   65 (78)
T ss_dssp             --TTEEEEEEEEEE--SSS-BSS-EEEEE---TTSE---EEEEE---------B-TTSEEEEEEEEEE-TT--
T ss_pred             CCCCCEEEEEEEEEECCCCceeeEEEEEeC-CCCccccCCccccc-------cCCCCCEEEEEEEEECCCCCC
Confidence            57999999999999999888654332 232 53221  1112222       899999999777777766654

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	277
1so9_A	164	Solution Structure Of Apocox11, 30 Structures Lengt		3e-39

>pdb|1SO9|A Chain A, Solution Structure Of Apocox11, 30 Structures Length = 164

Iteration: 1
 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 74/153 (48%), Positives = 98/153 (64%), Gaps = 9/153 (5%)
Query: 120 VPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPT 179
           VPLY  FC+ TGY GT QR E   + I            ++ V F+A+VA G+PW+F+P 
Sbjct: 2   VPLYDMFCRVTGYNGTTQRVEQASDLILDE---------KIKVTFDANVAAGLPWEFVPV 52
Query: 180 QREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGE 239
           QR++ V+ GE+    Y A+N +STP TG +T+NVTPM A  YFNK+QCFCF E  L PGE
Sbjct: 53  QRDIDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGE 112
Query: 240 QIDMPVFFYIDPEFETDPRMDGINNLILSYTFF 272
           +++MPV F++DPE        GI  L LSYTF+
Sbjct: 113 EMEMPVVFFVDPEIVKPVETQGIKTLTLSYTFY 145

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	277
1so9_A	164	Cytochrome C oxidase assembly protein CTAG; immuno	8e-54

>1so9_A Cytochrome C oxidase assembly protein CTAG; immunoglobulin-like fold, copper protein, structural proteomics in europe, spine; NMR {Sinorhizobium meliloti} SCOP: b.146.1.1 PDB: 1sp0_A Length = 164

 Score =  171 bits (433), Expect = 8e-54
 Identities = 73/158 (46%), Positives = 98/158 (62%), Gaps = 9/158 (5%)

Query: 120 VPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPT 179
           VPLY  FC+ TGY GT QR E   +          +   ++ V F+A+VA G+PW+F+P 
Sbjct: 2   VPLYDMFCRVTGYNGTTQRVEQASD---------LILDEKIKVTFDANVAAGLPWEFVPV 52

Query: 180 QREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGE 239
           QR++ V+ GE+    Y A+N +STP TG +T+NVTPM A  YFNK+QCFCF E  L PGE
Sbjct: 53  QRDIDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGE 112

Query: 240 QIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKVNED 277
           +++MPV F++DPE        GI  L LSYTF+     
Sbjct: 113 EMEMPVVFFVDPEIVKPVETQGIKTLTLSYTFYPREPS 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	277
1so9_A	164	Cytochrome C oxidase assembly protein CTAG; immuno	100.0
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	92.43
1suj_A	392	CONE arrestin; sensory transduction, signaling pro	82.51
2e6j_A	112	Hydin protein; PAPD, structural genomics, NPPSFA,	82.34

>1so9_A Cytochrome C oxidase assembly protein CTAG; immunoglobulin-like fold, copper protein, structural proteomics in europe, spine; NMR {Sinorhizobium meliloti} SCOP: b.146.1.1 PDB: 1sp0_A

Probab=100.00  E-value=6.8e-76  Score=507.19  Aligned_cols=149  Identities=49%  Similarity=0.952  Sum_probs=122.8

Q ss_pred             chhhHHHHHHHhcCCceeeeehhhHHHHhhccCCCcccccEEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEE
Q 023783          119 AVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAE  198 (277)
Q Consensus       119 ~VPLY~~FC~vTG~~Gtt~~~~~~~~~~~~~~~~~vd~~R~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~  198 (277)
                      ||||||+||++|||||||+++...         ..++.+|+|+|+|||+++++|||+|+|+|++|+|||||+++++|+|+
T Consensus         1 lVPLY~~fC~~TG~~Gtt~~~~~~---------~~~~~~R~I~V~F~a~~~~~lpW~F~P~q~~v~V~pGE~~~~~y~a~   71 (164)
T 1so9_A            1 MVPLYDMFCRVTGYNGTTQRVEQA---------SDLILDEKIKVTFDANVAAGLPWEFVPVQRDIDVRIGETVQIMYRAK   71 (164)
T ss_dssp             --------------------CCCC---------SSSCCSCCEEEEEEEEECTTSCEEEECSCSEEEECTTCCCCEEEEEE
T ss_pred             CCchHHHHHHHhCCCCEecccccC---------CccccceEEEEEEEeecCCCCceEEEeceeEEEEcCCCeEEEEEEEE
Confidence            699999999999999999876432         12568999999999999999999999999999999999999999999


Q ss_pred             cCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEeccEEEEeCCCCCCCcCCCCCcEEEEEEEeeecCC
Q 023783          199 NRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKVNE  276 (277)
Q Consensus       199 N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPei~~Dp~~~~v~tITLSYTFF~~~~  276 (277)
                      |++|++|+|||+|||+|++||.||||||||||+||+|+|||++||||+|||||||++||+|++|++||||||||++++
T Consensus        72 N~sd~~i~G~A~ynV~P~~a~~YF~KieCFCF~eQ~L~pgE~~~MPV~F~IDP~i~~D~~~~~v~tITLSYTFf~~~~  149 (164)
T 1so9_A           72 NLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVVFFVDPEIVKPVETQGIKTLTLSYTFYPREP  149 (164)
T ss_dssp             ECSSSCEECCCEEEECSSSCSTTBTTSCCSSCSCCEECTTCEEEEEECCCBCGGGGSSTTTTTCCBCCEEEEECSCCS
T ss_pred             CCCCCcEEEEECceeCHHHHhhhccceeeEcccCcccCCCCeEeeeEEEEECCCcCCCcccCCCCEEEEEEEEEecCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999864

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=92.43  E-value=0.2  Score=43.30  Aligned_cols=59  Identities=15%  Similarity=0.202  Sum_probs=46.3

Q ss_pred             eEEEccccEE-EecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhcccccccccccc----ccccCCCCeEeccEEE
Q 023783          174 WKFIPTQREV-RVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFE----EQRLLPGEQIDMPVFF  247 (277)
Q Consensus       174 W~F~P~q~~v-~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~----eQ~L~pGE~vdMPV~F  247 (277)
                      .+|. ..-.. .+. |+.....|..+|..+.|+.=..+             +..|-|+.    ..+++|||+.++-|.|
T Consensus       120 i~~~-~~~dfG~i~-g~~~~~~f~i~N~G~~pL~I~~v-------------~~scgct~~~~~~~~i~PGe~~~i~v~~  183 (220)
T 2qsv_A          120 MELS-TYLDMGQLD-GETTKAAIEIRNVGAGPLRLHSV-------------TTRNPALTAVPDRTEIKPGGSTLLRIAV  183 (220)
T ss_dssp             EECC-CEEEEEECT-TSCEEEEEEEEECSSSCEEEEEE-------------EECSTTEEEEESCSEECTTCEEEEEEEE
T ss_pred             EEEE-eEEeeeccC-CCeEEEEEEEEECCCCCEEEEEE-------------EeCCCCEeeecCCccCCCCCEEEEEEEE
Confidence            4444 33333 355 99999999999999999985443             45799987    8899999999988887

>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}

Probab=82.51  E-value=3.5  Score=39.58  Aligned_cols=67  Identities=13%  Similarity=0.180  Sum_probs=45.3

Q ss_pred             cCCCeeEEEEEEEcCCCCceEEEEeC--cccc---cchhccccccccccccccccCCCCeEeccEEEEeCCCCCC
Q 023783          186 KPGESALAFYTAENRSSTPITGVSTY--NVTP---MKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFET  255 (277)
Q Consensus       186 ~PGE~~l~fY~a~N~sd~pi~GqAvy--nVtP---~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPei~~  255 (277)
                      .|||++.+...+.|.|+++|..+-+-  ..+=   ...+ .+.|+-+-.-....+.||.+..  -.|.|-|.++.
T Consensus       206 ~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v~l~s~~-~~k~~Va~~e~~e~V~pgst~~--k~~~L~P~l~~  277 (392)
T 1suj_A          206 YHGEPINVNVKINNTTGKIVKKIKIIVEQVTDVVLFSLD-KYVKTVCAEETNDTVAANSTLS--KTFSVTPMLAN  277 (392)
T ss_dssp             ETTCCEEEEEEEEECSSSEEEEEEEEEEEEEEECSSSCC-EEEEEEEEEECCCCBCTTEEEE--EEEEECCCGGG
T ss_pred             cCCCEEEEEEEEECCCCCcEeEEEEEEEEEEEEEEecCC-cEEEEEEEEecCCCcCCCCEEE--EEEEEeccccC
Confidence            59999999999999999999874322  1111   1123 3355544443344899999955  67777788873

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.34  E-value=1.9  Score=32.47  Aligned_cols=58  Identities=22%  Similarity=0.210  Sum_probs=39.6

Q ss_pred             EecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhcccccccccccc--ccccCCCCeEeccEEEEe
Q 023783          184 RVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFE--EQRLLPGEQIDMPVFFYI  249 (277)
Q Consensus       184 ~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~--eQ~L~pGE~vdMPV~F~I  249 (277)
                      .|..|+.....+.++|.++.|..=+..    |.....    -.||-++  +-+|.|||+.++-|.|--
T Consensus        21 ~v~~g~~~~~~~~l~N~g~~p~~~~~~----~~~~~~----~~~f~v~p~~g~i~pg~~~~i~V~f~~   80 (112)
T 2e6j_A           21 KVFTGSAHCYEAILYNKGSIDALFNMT----PPTSAL----GACFVFSPKEGIIEPSGVQAIQISFSS   80 (112)
T ss_dssp             EEESSCCEEEEEEEEECCSSCEEEEEC----CCSSHH----HHHCEEESSEEEECTTBCCEEEEEECC
T ss_pred             eEEECCEEEEEEEEEECCcceEEEEEe----cCCccc----cCcEEEECCcCEECCCCEEEEEEEEEC
Confidence            456799999999999999998654443    322100    0134332  669999999888888743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	277
d1so9a_	131	b.146.1.1 (A:) Cytochrome C oxidase assembly prote	1e-56

>d1so9a_ b.146.1.1 (A:) Cytochrome C oxidase assembly protein CtaG {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]} Length = 131

class: All beta proteins
fold: Ctag/Cox11
superfamily: Ctag/Cox11
family: Ctag/Cox11
domain: Cytochrome C oxidase assembly protein CtaG
species: Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]

 Score =  175 bits (446), Expect = 1e-56
 Identities = 59/123 (47%), Positives = 82/123 (66%)

Query: 154 TVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNV 213
            +   ++ V F+A+VA G+PW+F+P QR++ V+ GE+    Y A+N +STP TG +T+NV
Sbjct: 7   LILDEKIKVTFDANVAAGLPWEFVPVQRDIDVRIGETVQIMYRAKNLASTPTTGQATFNV 66

Query: 214 TPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFK 273
           TPM A  YFNK+QCFCF E  L PGE+++MPV F++DPE        GI  L LSYTF+ 
Sbjct: 67  TPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVVFFVDPEIVKPVETQGIKTLTLSYTFYP 126

Query: 274 VNE 276
              
Sbjct: 127 REP 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	277
d1so9a_	131	Cytochrome C oxidase assembly protein CtaG {Rhizob	100.0
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	90.02

>d1so9a_ b.146.1.1 (A:) Cytochrome C oxidase assembly protein CtaG {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}

class: All beta proteins
fold: Ctag/Cox11
superfamily: Ctag/Cox11
family: Ctag/Cox11
domain: Cytochrome C oxidase assembly protein CtaG
species: Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]

Probab=100.00  E-value=5e-60  Score=393.80  Aligned_cols=125  Identities=47%  Similarity=0.932  Sum_probs=122.1

Q ss_pred             CCcccccEEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhcccccccccccc
Q 023783          152 DGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFE  231 (277)
Q Consensus       152 ~~vd~~R~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~  231 (277)
                      +.++.+|+|+|+|+|+++++|||+|+|+|++|.|||||..+++|.|+|+||++++|||+|||+|++||.||+|||||||+
T Consensus         5 ~~~~~dr~i~V~F~a~v~~~lpW~F~P~~~~i~V~pGe~~~v~y~a~N~s~~~~~g~A~~nV~P~~a~~Yf~KieCFCF~   84 (131)
T d1so9a_           5 SDLILDEKIKVTFDANVAAGLPWEFVPVQRDIDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFT   84 (131)
T ss_dssp             SSSCCSCCEEEEEEEEECTTSCEEEECSCSEEEECTTCCCCEEEEEEECSSSCEECCCEEEECSSSCSTTBTTSCCSSCS
T ss_pred             CccccceEEEEEEEccCCCCCcEEEEecceEEEEeCCCeEEEEEEEECCCCCcEEEEEEeeeCHHHHhhheecCcEEEEe
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCeEeccEEEEeCCCCCCCcCCCCCcEEEEEEEeeecCC
Q 023783          232 EQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKVNE  276 (277)
Q Consensus       232 eQ~L~pGE~vdMPV~F~IDPei~~Dp~~~~v~tITLSYTFF~~~~  276 (277)
                      ||+|+|||+++|||+|||||+|++|+++++|++||||||||+.++
T Consensus        85 ~Q~L~pgE~~~mpv~F~IDP~i~~D~~~~~i~~iTLSYTff~~~~  129 (131)
T d1so9a_          85 ETTLEPGEEMEMPVVFFVDPEIVKPVETQGIKTLTLSYTFYPREP  129 (131)
T ss_dssp             CCEECTTCEEEEEECCCBCGGGGSSTTTTTCCBCCEEEEECSCCS
T ss_pred             eeEECCCCEEEEeEEEEECCccccCCCcCCcCEEEEEEEEeccCC
Confidence            999999999999999999999999999999999999999999875

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=90.02  E-value=0.28  Score=36.58  Aligned_cols=76  Identities=17%  Similarity=0.152  Sum_probs=52.6

Q ss_pred             EEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEeccEEEEeCCCCCCCcCCCC
Q 023783          182 EVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDG  261 (277)
Q Consensus       182 ~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPei~~Dp~~~~  261 (277)
                      ++.|.|||...+...++|..+.+.....+---.|.-...  +      .....|+|||+....+..-++.+...     +
T Consensus        10 ~~~v~pG~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v--~------~~~~~L~pG~s~~~~~~Vt~p~~a~~-----G   76 (103)
T d1w8oa1          10 DVALEPGQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQV--Q------GSVEPLMPGRQAKGQVTITVPAGTTP-----G   76 (103)
T ss_dssp             CEEECTTCEEEEEEEEECCSSSCBSSCEEEEECCTTSEE--E------EEECCBCTTCEEEEEEEEECCTTCCC-----E
T ss_pred             ceeeCCCCeEEEEEEEEeCCCCceeeeeEEEcCCCCccc--c------CcceeeCCCCcEEEEEEEECCCCCCC-----c
Confidence            579999999999999999999887644333334532211  1      23446999999999998888766543     3


Q ss_pred             CcEEEEEEE
Q 023783          262 INNLILSYT  270 (277)
Q Consensus       262 v~tITLSYT  270 (277)
                      --.|++.++
T Consensus        77 ~Y~i~~~a~   85 (103)
T d1w8oa1          77 RYRVGATLR   85 (103)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEEE
Confidence            455555554