Citrus Sinensis ID: 023802

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MSVSIELLSTKNPNPNPRLSFGSEALYGSPCMRVQSRAQRVSIAPRAKVAAKGIGVGFQLPERRRSSFYRSTVVFSASHEESSSEESSEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEITKKY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccHHHHHHHHccccccccccccccccEEEcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHEccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHcccccccccccEEccEEEccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MSVSIELLstknpnpnprlsfgsealygspcmrvqsraqrvsIAPRAKVAAKgigvgfqlperrrssfyrstvvfsasheessseesSEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEatennpevKEIVEtftlptedvkefSTLRDFYLGIPYGLLLTLGGFISFmvtgsipairFGVILGGTLLALSIASLrshkkgktspvalkgqagqRVVYFTIEITKKY
Flexible Loop (DISEMBL)
MSVSIELLstknpnpnprlSFGSEALYGSPCMRVQSRAQRVSIAPrakvaakgigvgfqlperrrssfYRSTVVFsasheessseessEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELsedgkkylteatennpevkeiVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLrshkkgktspvalkgqagqrvvYFTIEITKKY
Low Complexity Region (SEG)
MSVSIELLSTKNPNPNPRLSFGSEALYGSPCMRVQSRAQRVSIAPRAKVAAKGIGVGFQLPERRRSSFYRSTVVFsasheessseesseikasakeseeaWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEITKKY
Disordered region (IsUnstruct)
*****************************************SIAPRAKVAAKGIGVGFQLP******FYRSTVV********************************AF************EAYEIYSKRATAILKE****************************************VKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLR**********ALKGQAGQRVVYFTIEI****
Disordered Region (DISOPRED)
*****************************************************IGVGFQLPERRRSSFYR**********************************LAAF*************************************************************************************FSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRS*****TSPVALKGQAGQRVVYFTIEITKKY
Disordered Region (DISEMBL)
MSVSIELLSTKNPNPNPRLSFGSEALYGSPCMRVQSRAQRVSIAPRAKVAAKGIGVGFQLPERRRSSFYRSTV***************************WKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLR***********LKGQAGQRVVYFTIEITKKY
Disordered Region (DISPRO)
*****ELLSTKNPNPNPRLSFG*EALYGSPCMRV****QRVSIAPRAKVAAKGIGVGFQLPERRRSSFYRSTVVFSA******************ESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEITKKY
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVSIELLSTKNPNPNPRLSFGSEALYGSPCMRVQSRAQRVSIAPRAKVAAKGIGVGFQLPERRRSSFYRSTVVFSASHEESSSEESSEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRAxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSEDGKKYLTEATENNPEVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEITKKY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
356568226	316	PREDICTED: uncharacterized protein LOC10	0.909	0.797	0.518	1e-66
297735538	344	unnamed protein product [Vitis vinifera]	0.971	0.781	0.486	8e-66
225439699	339	PREDICTED: uncharacterized protein LOC10	0.971	0.793	0.486	9e-66
388520637	310	unknown [Medicago truncatula]	0.891	0.796	0.513	1e-65
357506683	308	hypothetical protein MTR_7g073340 [Medic	0.891	0.801	0.513	1e-65
147828305	385	hypothetical protein VITISV_015389 [Viti	0.935	0.672	0.493	2e-65
224087865	331	predicted protein [Populus trichocarpa]	0.974	0.815	0.489	3e-64
224139370	228	predicted protein [Populus trichocarpa]	0.783	0.951	0.557	3e-62
18404784	335	Transmembrane proteins 14C [Arabidopsis	0.963	0.797	0.501	1e-61
21554522	334	putative non-green plastid inner envelop	0.963	0.799	0.501	1e-61

>gi|356568226|ref|XP_003552314.1| PREDICTED: uncharacterized protein LOC100808049 [Glycine max]

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 139/268 (51%), Positives = 186/268 (69%), Gaps = 16/268 (5%)

Query: 16  NPRLSFGSEALYGSPCMRV-QSRAQRVSIAPRAKVAA---KGIGVGFQLPERRRSSFYRS 71
           NP+LS    +L   P  R   S      + PRA  AA    G+   F    RR+      
Sbjct: 13  NPKLSHSHSSL---PFSRFPHSLNFHPLLKPRAVNAAVPPNGLAACFLTLHRRKPL---- 65

Query: 72  TVVFSASHEESSS-----EESSEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIY 126
           TV F+ASH++S       E+  ++ A ++ES+EAWKQ L  FREQA K Q VSQEAYE+Y
Sbjct: 66  TVAFTASHQDSEHREIEVEKERDVHAGSEESQEAWKQVLETFREQAEKFQGVSQEAYEVY 125

Query: 127 SKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTL 186
           SK+A  IL +  EQLK+ A+K + +L+V AKE++++GK+YL+ A +++PEVKEIVETFT 
Sbjct: 126 SKKAAVILTDATEQLKVLADKTKNELSVAAKEITDEGKEYLSAAADSSPEVKEIVETFTS 185

Query: 187 PTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLR 246
           P ED+++ S +RDFY+G+PYGL+L+LGGF+SFMVTG+  AIRFGVILGG LLALSI SL+
Sbjct: 186 PPEDIQKLSGVRDFYVGVPYGLMLSLGGFLSFMVTGNTAAIRFGVILGGVLLALSILSLK 245

Query: 247 SHKKGKTSPVALKGQAGQRVVYFTIEIT 274
           S+KKG+TSP+ALKGQA    + F  EI+
Sbjct: 246 SYKKGRTSPLALKGQAAIASILFLREIS 273

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735538|emb|CBI18032.3| unnamed protein product [Vitis vinifera]

 Score =  256 bits (654), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 145/298 (48%), Positives = 201/298 (67%), Gaps = 29/298 (9%)

Query: 1   MSVSIELLSTKNPNPNPRLSFGSE-------------------ALYGSPCMRVQSRAQRV 41
           MSV++E +S  +PNPNP  + GS                    +L G    R +SR   V
Sbjct: 1   MSVTLESISLSSPNPNPSPTTGSPLRITPYHPSSQSSSSLRFASLLGP---RPRSRPHGV 57

Query: 42  SIAPRAKVAAKGIGVGFQLPERRRSSFYRSTVVFSASHEESSS----EESSEIKASAKES 97
           S   R  ++  G+G G  +P  RR+S  R  +  +AS E+SS     +E++ + A A+ S
Sbjct: 58  SAVART-LSPIGLGHGL-VPLTRRTSCNRLVLASAASREDSSKIEVEKENTNVGAGAEAS 115

Query: 98  EEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAK 157
           EE W++TLA+ +EQA+KMQSVSQEAYEIYS+RA  IL ET++QLK +A+KA +DL  +AK
Sbjct: 116 EEEWQKTLASLKEQALKMQSVSQEAYEIYSERAKVILIETSKQLKAQADKASQDLNELAK 175

Query: 158 ELSEDGKKYLTEATENNP-EVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFI 216
            + EDGK+YL+ A EN+P  +K++VETFT P++D+ + S +RDFYLGIPYG+ L++GG +
Sbjct: 176 VIGEDGKEYLSLAAENSPVPLKDVVETFTSPSDDLDKISKVRDFYLGIPYGVALSVGGLL 235

Query: 217 SFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEIT 274
           SFM+TGSIPA+RFGVILGG LLALSI+SLR+ KKG++  +ALKGQ     + F  EI 
Sbjct: 236 SFMLTGSIPAVRFGVILGGALLALSISSLRAWKKGESLALALKGQTAIAGIIFLREIC 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439699|ref|XP_002271868.1| PREDICTED: uncharacterized protein LOC100243025 [Vitis vinifera]

 Score =  256 bits (653), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 145/298 (48%), Positives = 201/298 (67%), Gaps = 29/298 (9%)

Query: 1   MSVSIELLSTKNPNPNPRLSFGSE-------------------ALYGSPCMRVQSRAQRV 41
           MSV++E +S  +PNPNP  + GS                    +L G    R +SR   V
Sbjct: 1   MSVTLESISLSSPNPNPSPTTGSPLRITPYHPSSQSSSSLRFASLLGP---RPRSRPHGV 57

Query: 42  SIAPRAKVAAKGIGVGFQLPERRRSSFYRSTVVFSASHEESSS----EESSEIKASAKES 97
           S   R  ++  G+G G  +P  RR+S  R  +  +AS E+SS     +E++ + A A+ S
Sbjct: 58  SAVART-LSPIGLGHGL-VPLTRRTSCNRLVLASAASREDSSKIEVEKENTNVGAGAEAS 115

Query: 98  EEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAK 157
           EE W++TLA+ +EQA+KMQSVSQEAYEIYS+RA  IL ET++QLK +A+KA +DL  +AK
Sbjct: 116 EEEWQKTLASLKEQALKMQSVSQEAYEIYSERAKVILIETSKQLKAQADKASQDLNELAK 175

Query: 158 ELSEDGKKYLTEATENNP-EVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFI 216
            + EDGK+YL+ A EN+P  +K++VETFT P++D+ + S +RDFYLGIPYG+ L++GG +
Sbjct: 176 VIGEDGKEYLSLAAENSPVPLKDVVETFTSPSDDLDKISKVRDFYLGIPYGVALSVGGLL 235

Query: 217 SFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEIT 274
           SFM+TGSIPA+RFGVILGG LLALSI+SLR+ KKG++  +ALKGQ     + F  EI 
Sbjct: 236 SFMLTGSIPAVRFGVILGGALLALSISSLRAWKKGESLALALKGQTAIAGIIFLREIC 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520637|gb|AFK48380.1| unknown [Medicago truncatula]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 136/265 (51%), Positives = 185/265 (69%), Gaps = 18/265 (6%)

Query: 16  NPRLSFGSEALYGSPCMR--VQSRAQRVSIA-PRAKVAAKGIGVGFQLPERRRS---SFY 69
           NP+LS     L  SP     ++ R     ++ PR           + L +R +     F 
Sbjct: 15  NPKLSLNHTHLSHSPNFHPLLKHRHTTFKLSLPR-----------YALNQRTKPLTLVFA 63

Query: 70  RSTVVFSASHEESSSEESSEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKR 129
            ST    + H E   E+ +++ +S +ES+EAWKQ L  F+EQA+K+Q VSQEAYE+YSK+
Sbjct: 64  ASTPQHDSDHGEIEVEKGNDV-SSEEESQEAWKQALDTFKEQALKLQGVSQEAYEVYSKK 122

Query: 130 ATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTLPTE 189
           A  +L++T+EQLKI+A+KAR DL+VVAKE++E+GK+Y + A EN+PEVKEIVETFT P +
Sbjct: 123 AIVVLQDTSEQLKIQADKARHDLSVVAKEITEEGKEYFSSAAENSPEVKEIVETFTSPDD 182

Query: 190 DVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHK 249
           D+ + S +RDFY+GIPYGLLL+ GGF+SFM+TGSI AIRFGVILGG LLALSI+SL+S+K
Sbjct: 183 DLSKVSGVRDFYVGIPYGLLLSAGGFLSFMITGSIAAIRFGVILGGVLLALSISSLKSYK 242

Query: 250 KGKTSPVALKGQAGQRVVYFTIEIT 274
           KG+ S +ALKGQ     + F  EI+
Sbjct: 243 KGQPSSLALKGQTAIAGILFLREIS 267

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506683|ref|XP_003623630.1| hypothetical protein MTR_7g073340 [Medicago truncatula] gi|355498645|gb|AES79848.1| hypothetical protein MTR_7g073340 [Medicago truncatula]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 136/265 (51%), Positives = 185/265 (69%), Gaps = 18/265 (6%)

Query: 16  NPRLSFGSEALYGSPCMR--VQSRAQRVSIA-PRAKVAAKGIGVGFQLPERRRS---SFY 69
           NP+LS     L  SP     ++ R     ++ PR           + L +R +     F 
Sbjct: 15  NPKLSLNHTHLSHSPNFHPLLKHRHTTFKLSLPR-----------YALNQRTKPLTLVFA 63

Query: 70  RSTVVFSASHEESSSEESSEIKASAKESEEAWKQTLAAFREQAIKMQSVSQEAYEIYSKR 129
            ST    + H E   E+ +++ +S +ES+EAWKQ L  F+EQA+K+Q VSQEAYE+YSK+
Sbjct: 64  ASTPQHDSDHGEIEVEKGNDV-SSEEESQEAWKQALDTFKEQALKLQGVSQEAYEVYSKK 122

Query: 130 ATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNPEVKEIVETFTLPTE 189
           A  +L++T+EQLKI+A+KAR DL+VVAKE++E+GK+Y + A EN+PEVKEIVETFT P +
Sbjct: 123 AIVVLQDTSEQLKIQADKARHDLSVVAKEITEEGKEYFSSAAENSPEVKEIVETFTSPDD 182

Query: 190 DVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHK 249
           D+ + S +RDFY+GIPYGLLL+ GGF+SFM+TGSI AIRFGVILGG LLALSI+SL+S+K
Sbjct: 183 DLSKVSGVRDFYVGIPYGLLLSAGGFLSFMITGSIAAIRFGVILGGVLLALSISSLKSYK 242

Query: 250 KGKTSPVALKGQAGQRVVYFTIEIT 274
           KG+ S +ALKGQ     + F  EI+
Sbjct: 243 KGQPSSLALKGQTAIAGILFLREIS 267

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147828305|emb|CAN66482.1| hypothetical protein VITISV_015389 [Vitis vinifera]

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 142/288 (49%), Positives = 198/288 (68%), Gaps = 29/288 (10%)

Query: 1   MSVSIELLSTKNPNPNPRLSFGSE-------------------ALYGSPCMRVQSRAQRV 41
           MSV++E +S  +PNPNP  + GS                    +L G    R +SR   V
Sbjct: 1   MSVTLESISLSSPNPNPSPTTGSPLRITPYHPSSQSSSSLRFASLLGP---RPRSRPHGV 57

Query: 42  SIAPRAKVAAKGIGVGFQLPERRRSSFYRSTVVFSASHEESSS----EESSEIKASAKES 97
           S   R  ++  G+G G  +P  RR+S  R  +  +AS E+SS     +E++ + A A+ S
Sbjct: 58  SAVART-LSPIGLGHGL-VPLTRRTSCNRLVLASAASREDSSKIEVEKENTNVGAGAEAS 115

Query: 98  EEAWKQTLAAFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAK 157
           EE W++TLA+ +EQA+KMQSVSQE YEIYS+RA  IL ET++QLK +A+KA +DL  +AK
Sbjct: 116 EEEWQKTLASLKEQALKMQSVSQEXYEIYSERAKVILIETSKQLKAQADKASQDLNELAK 175

Query: 158 ELSEDGKKYLTEATENNP-EVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFI 216
            + EDGK+YL+ A EN+P  +K++VETFT P++D+ + S +RDFYLGIPYG+ L++GG +
Sbjct: 176 VIGEDGKEYLSLAAENSPVPLKDVVETFTSPSDDLDKISKVRDFYLGIPYGVALSVGGLL 235

Query: 217 SFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQ 264
           SFM+TGSIPA+RFGVILGG LLALSI+SLR+ KKG++  +ALKGQ G+
Sbjct: 236 SFMLTGSIPAVRFGVILGGALLALSISSLRAWKKGESLALALKGQTGR 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087865|ref|XP_002308255.1| predicted protein [Populus trichocarpa] gi|222854231|gb|EEE91778.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (640), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 141/288 (48%), Positives = 193/288 (67%), Gaps = 18/288 (6%)

Query: 1   MSVSIELLS---TKNPNPNPRLSFGSEALYGSPCMRVQS-----RAQRVSIAPRAKVAAK 52
           MSVS+ELLS   +  P   P +   S     +P ++ +S        R+S         K
Sbjct: 1   MSVSMELLSAGCSTLPLKRPPVCSSSSMALLAPSLKFKSLLLKPSGHRLSFESSRAFVPK 60

Query: 53  GIGVGFQLPERRRSSFYRSTVVFSASHEESSSE-----ESSEIKASAKESEEAWKQTLAA 107
           G+ VGF       +S  R  V F+ASHE+S S+     ES + K   +ESEE WKQTL +
Sbjct: 61  GLSVGF----LSGNSLNRPIVAFAASHEDSHSKIEVEKESEDRKLGGEESEEVWKQTLES 116

Query: 108 FREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYL 167
           F+EQA+K+QSVSQEAYEIYSK+   +L+ET+E+LKI+AEKA+ DL  +AKE  EDG + L
Sbjct: 117 FKEQALKLQSVSQEAYEIYSKKTMVVLQETSEKLKIQAEKAKSDLGELAKEFGEDGIQLL 176

Query: 168 TEATENNPE-VKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPA 226
           T ATEN+PE VKE+VET T  T+++ + S +RDF+LGIPYGLLL+  GF+SFM++GSI +
Sbjct: 177 TVATENSPESVKEVVETLTSSTDNLNDVSKVRDFHLGIPYGLLLSTAGFLSFMLSGSISS 236

Query: 227 IRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEIT 274
           +RFGVILGG LLALS++SL+S+K+ +   +ALKGQA    + F  +I+
Sbjct: 237 LRFGVILGGMLLALSVSSLKSYKRAEPYSLALKGQAAIAAIIFLRDIS 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139370|ref|XP_002323079.1| predicted protein [Populus trichocarpa] gi|222867709|gb|EEF04840.1| predicted protein [Populus trichocarpa]

 Score =  244 bits (623), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 127/228 (55%), Positives = 168/228 (73%), Gaps = 11/228 (4%)

Query: 53  GIGVGFQLPERRRSSFYRSTVVFSASHEESSS------EESSEIKASAKESEEAWKQTLA 106
           G+GVGF    R  +S  R  VVF+ SHE+S        +ES + K   +ESEE WKQTL 
Sbjct: 1   GVGVGF----RSGNSLNRQIVVFAGSHEDSEHSEIEVEKESQDKKLEGEESEEVWKQTLE 56

Query: 107 AFREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKY 166
           +F+EQA+++QSVSQEAYEIYS++A  IL+ET+E+LKI+A KA+KDL  +AKEL ED  +Y
Sbjct: 57  SFKEQALRLQSVSQEAYEIYSEKAMVILEETSEKLKIQAVKAKKDLGELAKELGEDSIEY 116

Query: 167 LTEATENNPE-VKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIP 225
           L  ATEN+PE VKE+VET +  T+D  + S +RDF +GIPYGLLL   GF+SFM++GSI 
Sbjct: 117 LVAATENSPEPVKEVVETLSSSTDDFNDISKVRDFQVGIPYGLLLATAGFLSFMLSGSIN 176

Query: 226 AIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEI 273
           +IRFGVILGG LLALS++SL+S+K+G+   +ALKGQA    + F  +I
Sbjct: 177 SIRFGVILGGALLALSVSSLKSYKRGEPDSLALKGQAAIVAIIFLRDI 224

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404784|ref|NP_565892.1| Transmembrane proteins 14C [Arabidopsis thaliana] gi|14334694|gb|AAK59525.1| putative non-green plastid inner envelope membrane protein [Arabidopsis thaliana] gi|20197395|gb|AAC67363.2| putative non-green plastid inner envelope membrane protein [Arabidopsis thaliana] gi|22136954|gb|AAM91706.1| putative non-green plastid inner envelope membrane protein [Arabidopsis thaliana] gi|330254455|gb|AEC09549.1| Transmembrane proteins 14C [Arabidopsis thaliana]

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 142/283 (50%), Positives = 186/283 (65%), Gaps = 16/283 (5%)

Query: 1   MSVSIELLSTKNPNPNPRLSFGSEA---LYGSPCMRVQSRAQRVSIAPRAKVAAKGIGVG 57
           MS+ +EL+S +NPN        S     L   P   + SR  R   APRA V+  GI  G
Sbjct: 2   MSIPMELMSIRNPNSTLLYRAHSRPPVKLCAPPRSLLPSR--RHFSAPRAVVSYPGIRFG 59

Query: 58  FQLPERRRSSFYRSTVVFSASHEESS------SEESSEIKASAKESEEAWKQTLAAFREQ 111
           F  PE       RS V F+ASHE+S        +E S+I      S+EAWKQTL +F+EQ
Sbjct: 60  FTSPEVL---LNRSVVAFAASHEDSGESGVEVGKEKSDIDVEDDTSKEAWKQTLESFKEQ 116

Query: 112 AIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEAT 171
             KMQSVS EAY + S++A  +LKET+EQL+I+AEKA+++L   AK +SE+G++Y+ +A 
Sbjct: 117 VSKMQSVSSEAYSVNSQKAMTVLKETSEQLRIQAEKAKEELGTKAKVVSEEGREYILKAA 176

Query: 172 ENNP-EVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFG 230
           E +P +VKEIVE F   TED+K  S   DF++GIPYGLLL +GGFI+FMV+GSIPAIRFG
Sbjct: 177 EESPSDVKEIVEAFA-STEDLKNVSRANDFHVGIPYGLLLLVGGFINFMVSGSIPAIRFG 235

Query: 231 VILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEI 273
           VILGG L ALS+ASL+SH+KG++S   LKGQ     + F  E+
Sbjct: 236 VILGGALFALSLASLKSHRKGESSTKFLKGQMAIVAIIFLREL 278

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554522|gb|AAM63598.1| putative non-green plastid inner envelope membrane protein [Arabidopsis thaliana]

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 142/283 (50%), Positives = 186/283 (65%), Gaps = 16/283 (5%)

Query: 1   MSVSIELLSTKNPNPNPRLSFGSEA---LYGSPCMRVQSRAQRVSIAPRAKVAAKGIGVG 57
           MS+ +EL+S +NPN        S     L   P   + SR  R   APRA V+  GI  G
Sbjct: 1   MSIPMELMSIRNPNSTLLYRAHSRPPVKLCAPPRSLLPSR--RHFSAPRAVVSYPGIRFG 58

Query: 58  FQLPERRRSSFYRSTVVFSASHEESS------SEESSEIKASAKESEEAWKQTLAAFREQ 111
           F  PE       RS V F+ASHE+S        +E S+I      S+EAWKQTL +F+EQ
Sbjct: 59  FTSPEVL---LNRSVVAFAASHEDSGESGVEVGKEKSDIDVEDDTSKEAWKQTLESFKEQ 115

Query: 112 AIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEAT 171
             KMQSVS EAY + S++A  +LKET+EQL+I+AEKA+++L   AK +SE+G++Y+ +A 
Sbjct: 116 VSKMQSVSSEAYSVNSQKAMTVLKETSEQLRIQAEKAKEELGTKAKVVSEEGREYILKAA 175

Query: 172 ENNP-EVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFG 230
           E +P +VKEIVE F   TED+K  S   DF++GIPYGLLL +GGFI+FMV+GSIPAIRFG
Sbjct: 176 EESPSDVKEIVEAFA-STEDLKNVSRANDFHVGIPYGLLLLVGGFINFMVSGSIPAIRFG 234

Query: 231 VILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEI 273
           VILGG L ALS+ASL+SH+KG++S   LKGQ     + F  E+
Sbjct: 235 VILGGALFALSLASLKSHRKGESSTKFLKGQMAIVAIIFLREL 277

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:2064206	335	AT2G38550 "AT2G38550" [Arabido	0.963	0.797	0.462	1.3e-52
TAIR|locus:2082578	226	AT3G57280 "AT3G57280" [Arabido	0.516	0.632	0.324	7.8e-10
TAIR|locus:2033177	119	AT1G50740 "AT1G50740" [Arabido	0.220	0.512	0.393	3.9e-06
TAIR|locus:2085780	119	AT3G20510 [Arabidopsis thalian	0.223	0.521	0.403	3.9e-06

TAIR|locus:2064206 AT2G38550 "AT2G38550" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 131/283 (46%), Positives = 171/283 (60%)

Query:     1 MSVSIELLSTKNPNPNPRLSFGSEA---LYGSPCMRVQSRAQRVSIAPRAKVAAKGIGVG 57
             MS+ +EL+S +NPN        S     L   P   + SR  R   APRA V+  GI  G
Sbjct:     2 MSIPMELMSIRNPNSTLLYRAHSRPPVKLCAPPRSLLPSR--RHFSAPRAVVSYPGIRFG 59

Query:    58 FQLPERRRSSFYRSTVVFXXXXXXXXXXXXXXXXXXXX------XXXXXWKQTLAAFREQ 111
             F  PE   +   RS V F                               WKQTL +F+EQ
Sbjct:    60 FTSPEVLLN---RSVVAFAASHEDSGESGVEVGKEKSDIDVEDDTSKEAWKQTLESFKEQ 116

Query:   112 AIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEAT 171
               KMQSVS EAY + S++A  +LKET+EQL+I+AEKA+++L   AK +SE+G++Y+ +A 
Sbjct:   117 VSKMQSVSSEAYSVNSQKAMTVLKETSEQLRIQAEKAKEELGTKAKVVSEEGREYILKAA 176

Query:   172 ENNP-EVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFG 230
             E +P +VKEIVE F   TED+K  S   DF++GIPYGLLL +GGFI+FMV+GSIPAIRFG
Sbjct:   177 EESPSDVKEIVEAFA-STEDLKNVSRANDFHVGIPYGLLLLVGGFINFMVSGSIPAIRFG 235

Query:   231 VILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEI 273
             VILGG L ALS+ASL+SH+KG++S   LKGQ     + F  E+
Sbjct:   236 VILGGALFALSLASLKSHRKGESSTKFLKGQMAIVAIIFLREL 278

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2082578 AT3G57280 "AT3G57280" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 7.8e-10, P = 7.8e-10
 Identities = 51/157 (32%), Positives = 75/157 (47%)

Query:   113 IKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATE 172
             I+ QS   ++ +  S    A L  TAE  K   EK  K  + V +  +   K+ +TE  E
Sbjct:    30 IRPQSFVVKSVDGNSSETPASLSYTAEVSKPVVEKTSKPYSTVDETATN--KESITEPVE 87

Query:   173 NNPEVKEIVETFTLPTEDVKEFSTLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVI 232
                      +  T P    K    + DF  GIPYG L+  GG + F  + ++ ++  GV+
Sbjct:    88 E--------DVATQPIRAAK----IHDFCFGIPYGGLVVSGGLLGFAFSRNLTSLSTGVL 135

Query:   233 LGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYF 269
              GG LLALS  SL+  ++GK+S   + GQA    V F
Sbjct:   136 YGGGLLALSTLSLKIWREGKSSFPYILGQAVLSAVVF 172

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2033177 AT1G50740 "AT1G50740" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query:   197 LRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPV 256
             + DF   IPYG+LL +GGFI ++  GSI ++  G   G  ++     SL++ +K KTS +
Sbjct:     1 MHDFCFTIPYGILLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGFISLKAFEKKKTSLL 60

Query:   257 A 257
             A
Sbjct:    61 A 61

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2085780 AT3G20510 [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 25/62 (40%), Positives = 35/62 (56%)

Query:   197 LRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPV 256
             + DF   IPYG+LL  GGFI +M  GSI +   G   G  L+     SL++ +K K S +
Sbjct:     1 MHDFCFTIPYGMLLIGGGFIGYMKKGSITSFAGGAGTGLLLILAGYISLKAFEKKKNSTI 60

Query:   257 AL 258
             A+
Sbjct:    61 AM 62


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.362    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      277       252   0.00082  114 3  11 22  0.46    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  565 (60 KB)
  Total size of DFA:  142 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.16u 0.11s 25.27t   Elapsed:  00:00:01
  Total cpu time:  25.17u 0.11s 25.28t   Elapsed:  00:00:01
  Start:  Tue May 21 00:48:22 2013   End:  Tue May 21 00:48:23 2013

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	277
pfam03647	96	pfam03647, Tmemb_14, Transmembrane proteins 14C	4e-10

>gnl|CDD|202717 pfam03647, Tmemb_14, Transmembrane proteins 14C

 Score = 55.3 bits (134), Expect = 4e-10
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 200 FYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALK 259
            + GI Y  L+ +GG + +   GS+P++  G+I G  L   +    ++   G    +AL 
Sbjct: 1   DHPGIAYAALVAIGGIMGYAKAGSVPSLIAGLIFGALLGYGAYLLSQNQPYG--LELALL 58

Query: 260 GQA 262
             A
Sbjct: 59  ASA 61

This family of short membrane proteins are as yet uncharacterized. Length = 96

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
KOG4267	110	consensus Predicted membrane protein [Function unk	99.87
PF03647	96	Tmemb_14: Transmembrane proteins 14C; InterPro: IP	99.61
COG5548	105	Small integral membrane protein [Function unknown]	98.7
PF06570	206	DUF1129: Protein of unknown function (DUF1129); In	93.44
PRK05771	646	V-type ATP synthase subunit I; Validated	88.43
PRK06569	155	F0F1 ATP synthase subunit B'; Validated	86.29
PRK10884	206	SH3 domain-containing protein; Provisional	83.12
PF06738	193	DUF1212: Protein of unknown function (DUF1212); In	82.17
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	81.18
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	80.46

>KOG4267 consensus Predicted membrane protein [Function unknown]

Probab=99.87  E-value=1.4e-22  Score=166.21  Aligned_cols=77  Identities=31%  Similarity=0.455  Sum_probs=73.7

Q ss_pred             cccceechhhHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCC-CchhHHH-HHHHHHHHHHHHHhh
Q 023802          197 LRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGK-TSPVALK-GQAGQRVVYFTIEIT  274 (277)
Q Consensus       197 mHDFclgipYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSLk~~k~gk-~s~l~L~-~SavLAavm~~R~~~  274 (277)
                      |||||+||||++||++||||||+|+||++||++|++||++   +||+||+.|+|++ ++++++. ++++|+++|++|.++
T Consensus         1 m~~~~f~~~y~~Lv~~GGliGY~kkgSi~SL~aGl~~G~l---~g~~s~~l~~~~~~~~~~~l~~~s~~L~gvmg~R~~~   77 (110)
T KOG4267|consen    1 MHDDCFGIPYAALVTVGGLIGYLKKGSIPSLAAGLLFGAL---AGYGSYLLSRDKKGGSLVALGGTSAALLGVMGQRFYR   77 (110)
T ss_pred             CCchhhhhhHHHHHHhcceeeeeecCCcchHHHHHHHHHH---HHHHHHHhhcCCCcCchhHHHHHHHHHHHHHhhhhhc
Confidence            7999999999999999999999999999999999999988   9999999999999 9999999 699999999999876


Q ss_pred             hc
Q 023802          275 KK  276 (277)
Q Consensus       275 ~~  276 (277)
                      .+
T Consensus        78 s~   79 (110)
T KOG4267|consen   78 SR   79 (110)
T ss_pred             cC
Confidence            53

>PF03647 Tmemb_14: Transmembrane proteins 14C; InterPro: IPR005349 This family of short membrane proteins is as yet uncharacterised

Probab=99.61  E-value=5.4e-17  Score=128.20  Aligned_cols=74  Identities=35%  Similarity=0.420  Sum_probs=65.0

Q ss_pred             ceechhhHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHhhh
Q 023802          200 FYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEITK  275 (277)
Q Consensus       200 FclgipYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSLk~~k~gk~s~l~L~~SavLAavm~~R~~~~  275 (277)
                      ||++++||+++++||++||+|+||++||++|+++|++++++++.+.  ++++....+++.+|++|+++|++|.++.
T Consensus         1 f~~~~~y~~ll~~GG~~Gy~k~gS~~SLiaG~~~G~ll~~~~~~~~--~~~~~~~~~~l~~s~~L~~~m~~R~~~t   74 (96)
T PF03647_consen    1 FHLAIPYGALLAVGGIMGYVKKGSKPSLIAGVGFGALLLYAGYLSL--TNQKWGSELALAISAVLAGVMGYRYIKT   74 (96)
T ss_dssp             HCHCHHHHHHHHHHHHHHCTSS--CHCHHHHHHHHHHHHHHHCCCS---STHHCCHHHHHHHHHHHHCCTSSS-SS
T ss_pred             CchhHHHHHHHHHhhHHHhHhccchhHHHHHHHHHHHHHHHHHHhh--ccCCccHHHHHHHHHHHHHHHHHHHHHc
Confidence            8999999999999999999999999999999999999888888866  6667788999999999999999997653

; GO: 0016020 membrane; PDB: 2LOS_A 2LOO_A 2LOP_A.

>COG5548 Small integral membrane protein [Function unknown]

Probab=98.70  E-value=4e-08  Score=80.46  Aligned_cols=69  Identities=23%  Similarity=0.279  Sum_probs=56.0

Q ss_pred             chhhHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCc--hhHHHHHHHHHHHHHHHHhhh
Q 023802          203 GIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTS--PVALKGQAGQRVVYFTIEITK  275 (277)
Q Consensus       203 gipYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSLk~~k~gk~s--~l~L~~SavLAavm~~R~~~~  275 (277)
                      .|.|+.|..+||+|||++++|++||++|+++|+++..++|.    ..+|++-  ..++..++++-+.-+.|.++.
T Consensus         7 A~~ls~L~tiGGliGY~rk~S~vSL~sG~~~G~~~~~A~yL----~~~g~~~Gl~~A~~~s~~Ll~~~~~R~~~s   77 (105)
T COG5548           7 AIALSMLATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYL----QLQGQTWGLILATVVSAALLVFFALRLVRS   77 (105)
T ss_pred             HHHHHHHHHhhhHHHHHhcCCchhhHHHHHHhHHHHHHHHH----HHcCcccCeehHHHHHHHHHHhcchhcccc
Confidence            57899999999999999999999999999999998888887    3334333  467778888877777776543

>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues

Probab=93.44  E-value=2.4  Score=37.24  Aligned_cols=25  Identities=24%  Similarity=0.214  Sum_probs=14.7

Q ss_pred             cccceechhhHHHH------HHhhHHHHHhc
Q 023802          197 LRDFYLGIPYGLLL------TLGGFISFMVT  221 (277)
Q Consensus       197 mHDFclgipYg~LV------a~GGiiGY~ka  221 (277)
                      .-++|.-+.+++++      .+-|+++++..
T Consensus        75 ~~~~~~~~ld~~L~~~~if~~~~gi~~~f~~  105 (206)
T PF06570_consen   75 NSNPWLMALDNSLLFFGIFSLLFGIMGFFSP  105 (206)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44556655555544      44577777666

However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).

>PRK05771 V-type ATP synthase subunit I; Validated

Probab=88.43  E-value=6.5  Score=40.02  Aligned_cols=71  Identities=24%  Similarity=0.406  Sum_probs=43.7

Q ss_pred             hHhHHhhcCc---hhhHHHhhcCCCCc---cc-ccccccccceec-----hhhHHHHHHhhHHHHHhc------------
Q 023802          166 YLTEATENNP---EVKEIVETFTLPTE---DV-KEFSTLRDFYLG-----IPYGLLLTLGGFISFMVT------------  221 (277)
Q Consensus       166 yl~~aaensp---~vK~i~et~~~~~e---~~-~~~s~mHDFclg-----ipYg~LVa~GGiiGY~ka------------  221 (277)
                      .-+..-+|++   +..+|++..+-|.=   || --.+..+=+.+|     ++||+++.++|++-..+.            
T Consensus       315 ~~Pt~l~N~~~~~pFE~lv~mYg~P~Y~EiDPT~~~ai~f~lfFGmM~gD~GyGLil~l~~~~l~~~~~k~~~~~~~~~~  394 (646)
T PRK05771        315 EVPTKLKNPKFIKPFESLTEMYSLPKYNEIDPTPFLAIFFPLFFGMMLGDAGYGLLLLLIGLLLSFKLKKKSEGLKRLLK  394 (646)
T ss_pred             CCCEEeeCCchhhhHHHHHHHcCCCCCCCcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence            3444455665   56688888777621   22 222455656666     478999999777544322            


Q ss_pred             ----CChhHHHHHHHHHHH
Q 023802          222 ----GSIPAIRFGVILGGT  236 (277)
Q Consensus       222 ----GSi~SL~aGl~fG~l  236 (277)
                          -++.|.++|+++|..
T Consensus       395 il~~~gi~sii~G~lyG~f  413 (646)
T PRK05771        395 ILIYLGISTIIWGLLTGSF  413 (646)
T ss_pred             HHHHHHHHHHHHHHHHHhH
Confidence                356677777777776

>PRK06569 F0F1 ATP synthase subunit B'; Validated

Probab=86.29  E-value=7.2  Score=34.23  Aligned_cols=68  Identities=15%  Similarity=0.100  Sum_probs=58.7

Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhHhHHhhcCc
Q 023802          108 FREQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARKDLTVVAKELSEDGKKYLTEATENNP  175 (277)
Q Consensus       108 fkeqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~~L~~~ake~~e~gkeyl~~aaensp  175 (277)
                      .|++|.+++.--++...-...+|..+..||.+.|..+++..++.+..--+.+-+++.+-+...++|--
T Consensus        56 ~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~~~~~~~~~  123 (155)
T PRK06569         56 LTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAKQFR  123 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777777777777777778889999999999999999999999999999999999999999998544

>PRK10884 SH3 domain-containing protein; Provisional

Probab=83.12  E-value=14  Score=33.38  Aligned_cols=22  Identities=32%  Similarity=0.360  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHH
Q 023802          134 LKETAEQLKIEAEKARKDLTVV  155 (277)
Q Consensus       134 L~etse~L~iqa~ka~~~L~~~  155 (277)
                      |++--++|+.|.+++++++..+
T Consensus       137 L~~~n~~L~~~l~~~~~~~~~l  158 (206)
T PRK10884        137 LKEENQKLKNQLIVAQKKVDAA  158 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555443

>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea

Probab=82.17  E-value=9  Score=32.51  Aligned_cols=55  Identities=13%  Similarity=0.022  Sum_probs=43.0

Q ss_pred             hhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHH
Q 023802          213 GGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFT  270 (277)
Q Consensus       213 GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSLk~~k~gk~s~l~L~~SavLAavm~~  270 (277)
                      ++.+.++..|+...++...+.|.+   .++......|.+.+.....+.+++++++++.
T Consensus       114 ~~~fa~lfgg~~~~~~~a~i~g~~---~~~~~~~~~r~~~~~~~~~~~aa~~~~~~a~  168 (193)
T PF06738_consen  114 SAAFALLFGGSWIDMIVAFILGLL---VGLLRQLLSRRRLNSFIQEFIAAFLASLLAA  168 (193)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH---HHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            334556689999999999999999   6666666788888888888888887777644

Some of these sequences are predicted to be membrane proteins.

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=81.18  E-value=11  Score=39.62  Aligned_cols=41  Identities=7%  Similarity=0.138  Sum_probs=24.4

Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023802          110 EQAIKMQSVSQEAYEIYSKRATAILKETAEQLKIEAEKARK  150 (277)
Q Consensus       110 eqa~kmq~~s~eaY~vys~ka~~vL~etse~L~iqa~ka~~  150 (277)
                      .+...|+.+...-+.-+.+++...+++..++.+.|.+....
T Consensus       320 ~~l~~l~~v~~~nl~~~v~~~~~~~~~ip~~v~~qt~~~v~  360 (806)
T PF05478_consen  320 SQLNNLEEVIKTNLSSIVQEGNSRFNDIPEKVQNQTSDVVP  360 (806)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            33445555555555666667777777777766666554443

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=80.46  E-value=3.8  Score=34.79  Aligned_cols=43  Identities=28%  Similarity=0.260  Sum_probs=25.8

Q ss_pred             chhhHHHHHHhhHHHHHhcCChhHHH-------HHHHHHHHHHHHHHHHH
Q 023802          203 GIPYGLLLTLGGFISFMVTGSIPAIR-------FGVILGGTLLALSIASL  245 (277)
Q Consensus       203 gipYg~LVa~GGiiGY~kaGSi~SL~-------aGl~fG~lLl~aGygSL  245 (277)
                      .+.-|++++++||++.+..+.-.+.+       +.+..|++|+..|+..+
T Consensus        11 ~iilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~   60 (191)
T PF04156_consen   11 LIILGILLIASGIAALVLFISGLGALISFILGIALLALGVVLLSLGLLCL   60 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678889999999977776422222       22224566555565444

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	277
2loo_A	108	Transmembrane protein 14A; helical bundle; NMR {Ho	8e-04

>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A Length = 108

 Score = 37.4 bits (86), Expect = 8e-04
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 201 YLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVAL 258
            +G  Y  L+T G    +   G +P++  G+ +G         + R     +   V+L
Sbjct: 12  LIGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCLAG---YGAYRVSNDKRDVKVSL 66

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	277
2loo_A	108	Transmembrane protein 14A; helical bundle; NMR {Ho	99.43
2los_A	121	Transmembrane protein 14C; paramagnetic relaxation	99.41

>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A

Probab=99.43  E-value=2.6e-17  Score=132.74  Aligned_cols=76  Identities=16%  Similarity=0.221  Sum_probs=70.3

Q ss_pred             ccccceechhhHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHhh
Q 023802          196 TLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEIT  274 (277)
Q Consensus       196 ~mHDFclgipYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSLk~~k~gk~s~l~L~~SavLAavm~~R~~~  274 (277)
                      ++-.+|++||||+++++||++||+|+||++||++|+++|++   +++++|+.|++++...+.+..+++++.+|+.|.++
T Consensus         7 ~~~~~~~~~~yg~Ll~~GGi~GY~k~gS~~SL~aG~~~G~l---l~~~~~~~~~~~~~~~l~l~~S~~L~~~m~~R~~~   82 (108)
T 2loo_A            7 KVGMDLIGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCL---AGYGAYRVSNDKRDVKVSLFTAFFLATIMGVRFKR   82 (108)
Confidence            34568999999999999999999999999999999999998   69999999999988888899999999999999875

>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}

Probab=99.41  E-value=3.7e-17  Score=134.35  Aligned_cols=77  Identities=18%  Similarity=0.322  Sum_probs=71.1

Q ss_pred             cccccceechhhHHHHHHhhHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHHhh
Q 023802          195 STLRDFYLGIPYGLLLTLGGFISFMVTGSIPAIRFGVILGGTLLALSIASLRSHKKGKTSPVALKGQAGQRVVYFTIEIT  274 (277)
Q Consensus       195 s~mHDFclgipYg~LVa~GGiiGY~kaGSi~SL~aGl~fG~lLl~aGygSLk~~k~gk~s~l~L~~SavLAavm~~R~~~  274 (277)
                      ..|-=+|++|+||+++++||++||+|+||++||++|+++|++   +++++|+.|++++++++.+..+++++.+|+.|.++
T Consensus        15 ~~m~~~~~~~~yg~Ll~~GGiiGY~k~gS~~SLiaGl~~G~l---~~~~a~~~~~~~~~~~l~l~~S~~L~~~mg~R~~~   91 (121)
T 2los_A           15 SVVPLHWFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSL---AGLGAYQLSQDPRNVWVFLATSGTLAGIMGMRFYH   91 (121)
Confidence            345559999999999999999999999999999999999998   78999999999998889999999999999999874

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00