Citrus Sinensis ID: 023810

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRESRYAPPGAYHTPPYGVPPSGSRDYPAPPPYGYPYGRPPQDPYYATAPPPSGYPYGAYNAPPAYGQPSYGAYGAAPPGGYYGQVEEKKKSKFGGMGTGLAVGAVGGILGGLALAEGVDALEDHIADEAAEKVEDDLGYDGDDF
Secondary Structure (PSIPRED)
ccccEEEEEEEEEccccccccccccccccEEEEEEcccccEEcccccccccccccccEEEEEccccccccccEEEEEEEcccccccccEEEEEEEEcccccccccccccEEEEEEEEcccccccEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEEcccccccccccccccEEEEEEEccccccccccccccccccccccEEEEEcccHHccccEEEEEEEEccccccccccEEEEEEEHHHHccccccccccEEEEEEEcccccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MASRYEVEVTITSAkdlknvnwrhgpnrpyavlwvdpnkkcstkvddegdtcpywdetlaiplpgpvdddttLIIDVVHAGNEEDTKKLIGSAKLKLKDVindvglgeraSLTLklkrpsgrphgkvdVKVAVresryappgayhtppygvppsgsrdypapppygypygrppqdpyyatapppsgypygaynappaygqpsygaygaappggyygqveekkkskfggmgtGLAVGAVGGILGGLALAEGVDALEDHIADEAAEKveddlgydgddf
Flexible Loop (DISEMBL)
MASRYEVEVTItsakdlknvnwrhgpnrpyavlwvdpnKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHagneedtkkligsaklklkdvindvglgerasltlklkrpsgrphgkvdvkVAVRESRYAPPGAYHTPPYGVPPSGSRDYPAPPPYGYPYGRPPQDPYYATAPPPSGYPYGAYNAPPAYGQPSYGAYGAAPPGGYYGQVEEKKKSKFGGMGTGLAVGAVGGILGGLALAEGVDALEDHIADEAaekveddlgydgddf
Low Complexity Region (SEG)
MASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPvdddttliidvvHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRESRYAPPGAYHTPPYGVPPSGSrdypapppygypygrppqdpyyatapppsgypygaynappaygqpsygaygaappggyygQVEEKKKSKFggmgtglavgavggilgglalaegvDALEDHIADEAAEKVEDDLGYDGDDF
Disordered region (IsUnstruct)
*******EVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASL*******************************************************************************Y*************************************GTGLAVGAVGGILGGLALAEGVDALEDHI*******************
Disordered Region (DISOPRED)
**SRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRESRYAPPGAYHTPPYG***********************************************************************************AVGAVGGILGGLALAEGVDALEDHIADEAAEKVEDDL*******
Disordered Region (DISEMBL)
********VTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLK*********VDVKVAVRESRYAPPGAYHTPPYGVPPSGSRDYPAPPPYGYPYGRPPQDPYYATAPPPSGYPYGAYNAPPAYGQPSYGAYGAAPPGGYYGQVEEKKKSKFGGMGTGLAVGAVGGILGGLALAEGVDALEDHIADEAAEKVEDDLGYDGDDF
Disordered Region (DISPRO)
**SRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRESRYAPPGAYHTPPYGVPPSGSRDYPAPPPYGYPYGRPPQDPYYATAPPPSGYPYGAYNAPPAYGQPSYGAYGAAPPGGYYGQVEEKKKSKFGGMGTGLAVGAVGGILGGLALAEGVDALEDHIADEAAEKVEDDLGY*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRESRYAPPGAYHTPPYGVPPSGSRDYPAPPPYGYPYGRPPQDPYYATAPPPSGYPYGAYNAPPAYGQPSYGAYGAAPPGGYYGQVEEKKKSKFGGMGTGLAVGAVGGILGGLALAEGVDALEDHIADEAAEKVEDDLGYDGDDF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
356530838	281	PREDICTED: uncharacterized protein LOC10	0.956	0.943	0.627	1e-87
449485509	291	PREDICTED: uncharacterized protein LOC10	0.989	0.941	0.608	1e-82
217073077	301	unknown [Medicago truncatula] gi|3885143	0.956	0.880	0.618	6e-82
225464535	286	PREDICTED: uncharacterized protein LOC10	0.942	0.912	0.593	7e-77
359490466	268	PREDICTED: uncharacterized protein LOC10	0.920	0.951	0.587	3e-75
147836228	286	hypothetical protein VITISV_006805 [Viti	0.942	0.912	0.593	1e-73
356561526	256	PREDICTED: uncharacterized protein LOC10	0.924	1.0	0.555	9e-71
147859725	268	hypothetical protein VITISV_002549 [Viti	0.884	0.914	0.583	4e-70
225464609	268	PREDICTED: uncharacterized protein LOC10	0.884	0.914	0.583	1e-69
297808401	239	hypothetical protein ARALYDRAFT_910412 [	0.823	0.953	0.559	9e-68

>gi|356530838|ref|XP_003533986.1| PREDICTED: uncharacterized protein LOC100817630 [Glycine max]

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 184/293 (62%), Positives = 210/293 (71%), Gaps = 28/293 (9%)

Query: 1   MASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLA 60
           M SRYEVE+ ++SA+ LKNVNWRHGPNRPY V+WVDP+ K ST+VD+ GDT   WD+TL 
Sbjct: 1   MGSRYEVELKLSSARALKNVNWRHGPNRPYVVVWVDPSNKLSTRVDESGDTDANWDQTLT 60

Query: 61  IPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPS 120
           IPLP    +D TL IDVVHAG+EEDTK LIGSA+LKL D+++DVG+GER S TL LKRPS
Sbjct: 61  IPLPPKPLEDQTLYIDVVHAGSEEDTKPLIGSARLKLVDILDDVGIGERVSRTLSLKRPS 120

Query: 121 GRPHGKVDVKVAVRESRYAPPGAYHTPPYGVPPSGSRDYPAPPPYGY----PYGRPPQDP 176
           GRPHGKV+V V +RE  Y   G Y+ PPYGV     RDY +P P GY    PYG PPQ  
Sbjct: 121 GRPHGKVEVSVTIREPSYRAQGGYNAPPYGV-----RDY-SPAPQGYGGYPPYGAPPQQA 174

Query: 177 YYATAPPPSGYPYGA----YNAPPAYGQPSYGAYGAAPPGGYYGQ--------VEEKKKS 224
           YY+   PPSGYPY A    YNAPP   Q  YG Y A P    YGQ         EEKKKS
Sbjct: 175 YYSA--PPSGYPYNAPPQPYNAPP---QSGYG-YNALPQTASYGQGSGYGYAPQEEKKKS 228

Query: 225 KFGGMGTGLAVGAVGGILGGLALAEGVDALEDHIADEAAEKVEDDLGYDGDDF 277
           KFGGMGTGLAVGAV G LGG+AL EG + +ED I D+ AE+VEDDLGYDGDDF
Sbjct: 229 KFGGMGTGLAVGAVAGALGGIALVEGAEYVEDKIEDDVAERVEDDLGYDGDDF 281

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485509|ref|XP_004157192.1| PREDICTED: uncharacterized protein LOC101224685 [Cucumis sativus]

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 179/294 (60%), Positives = 215/294 (73%), Gaps = 20/294 (6%)

Query: 1   MASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLA 60
           MASRYE+E+ I SAKDLKN+NW++G  +PYAV+W+DP +K STKVD++GDT P+WDETL 
Sbjct: 1   MASRYELELKIQSAKDLKNINWKYGTLKPYAVVWIDPKQKSSTKVDNQGDTSPFWDETLV 60

Query: 61  IPLPGPVDDDTTLIIDVVHA-GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP 119
           IP    ++D +TL IDVVH  G +EDTK LIGSA+L L ++I+DVGLGE +  TL+LKRP
Sbjct: 61  IPFFSSIED-STLHIDVVHVVGADEDTKPLIGSARLPLAELIDDVGLGESSQRTLQLKRP 119

Query: 120 SGRPHGKVDVKVAVRESRYAPPGAYHTPPYGVPPSGS-RDYPAPPPYGYPYGRPPQDPYY 178
           SGRP GK++VKV VRE RY    +Y+TPPYGVPP GS RDY APPP        P +PYY
Sbjct: 120 SGRPQGKIEVKVTVREPRYRSSDSYYTPPYGVPPPGSARDYSAPPPPYVAPYSAPPNPYY 179

Query: 179 ATAPPPSGYPYGAYN-----------APPAYGQPSY--GAYGAAPPG--GYYGQVEEKKK 223
           + A PPSGYPYG Y                YGQPSY  G+YG    G   YYGQ EEKKK
Sbjct: 180 SAA-PPSGYPYGGYGAPAPPPTAPPYGQSNYGQPSYGQGSYGQPAYGEHTYYGQPEEKKK 238

Query: 224 SKFGGMGTGLAVGAVGGILGGLALAEGVDALEDHIADEAAEKVEDDLGYDGDDF 277
           SKF GMGTGLAVGA  GILGGLA+ EGV+ +ED IA++AA+KVEDDLGY  +DF
Sbjct: 239 SKF-GMGTGLAVGAAAGILGGLAIGEGVEYVEDQIAEDAAQKVEDDLGYGDEDF 291

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073077|gb|ACJ84898.1| unknown [Medicago truncatula] gi|388514313|gb|AFK45218.1| unknown [Medicago truncatula]

 Score =  310 bits (793), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 177/286 (61%), Positives = 208/286 (72%), Gaps = 21/286 (7%)

Query: 1   MASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLA 60
           MASRYE EV ++SA +LKNVNWR+G N+PY V+W+DP  K STKVD+ GDT   WD+TL 
Sbjct: 1   MASRYEAEVKLSSAYNLKNVNWRNGSNKPYGVVWIDPKNKFSTKVDENGDTEANWDQTLI 60

Query: 61  IPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPS 120
           IPLP    +D TL ID+VHAG+E DTK LIGSA+LKL +V++DVG+GERAS +L LKRPS
Sbjct: 61  IPLPPQPIEDLTLYIDIVHAGSEPDTKPLIGSARLKLVEVLDDVGIGERASRSLTLKRPS 120

Query: 121 GRPHGKVDVKVAVRESRYAPPGAYHTPPYGVPP--SGSRDY---PAPPPYGYPYGRPPQD 175
           GRPHGKVDVKV +RE  Y   G Y+ PPYGVPP  + SRDY   P+ P YG PYG PPQ+
Sbjct: 121 GRPHGKVDVKVIIREPGYRGSGEYYAPPYGVPPPQASSRDYNYNPSAPGYGNPYGAPPQN 180

Query: 176 PYYATAPPPSGYPYGA-----------YNAPPAYG--QPSYG-AYGAAPPGGYYGQVEEK 221
            Y  +A PP GYPY A           YNA P     +P YG +YG     G YGQVEEK
Sbjct: 181 -YGYSAAPPGGYPYNAGPQTAPPGGYPYNAGPQTTGYEPGYGSSYGQGSSYG-YGQVEEK 238

Query: 222 KKSKFGGMGTGLAVGAVGGILGGLALAEGVDALEDHIADEAAEKVE 267
           KKSKFGGMGTGLAVGAV G+LGG+AL EG + LED IAD+AA+KVE
Sbjct: 239 KKSKFGGMGTGLAVGAVAGVLGGVALVEGAEYLEDKIADDAADKVE 284

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464535|ref|XP_002271267.1| PREDICTED: uncharacterized protein LOC100249100 [Vitis vinifera]

 Score =  293 bits (749), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 165/278 (59%), Positives = 207/278 (74%), Gaps = 17/278 (6%)

Query: 1   MASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLA 60
           MA RYE+E+ I+SAKDLKNVNWRHG  +PY V+WVDP  K STKVD++GDT P W+ETL 
Sbjct: 1   MAGRYEIELIISSAKDLKNVNWRHGSLKPYVVVWVDPAAKLSTKVDNDGDTFPCWNETLL 60

Query: 61  IPLPGPVDDDTTLIIDVVH--AGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR 118
           IP+P  + +D+TL +DVVH  A +E+DTK ++GSA+L L+DV++DVG G +A  TL+L+R
Sbjct: 61  IPVPSRI-EDSTLYLDVVHLKADDEDDTKPVVGSARLFLRDVVDDVGFGAQAIRTLELRR 119

Query: 119 PSGRPHGKVDVKVAVRESRYAPPGAYHTPPYGV-PPSGSR--DYPAPPPYGYPYGRPPQD 175
           PSGRPHGKV+VKV+VR+ RY  PG+ ++PPYGV PP+G+R   Y A P Y  PYG PP D
Sbjct: 120 PSGRPHGKVEVKVSVRDPRYRAPGSAYSPPYGVPPPAGTRGAGYAASPAYATPYGAPPPD 179

Query: 176 PYYATAPPPSGYPYGAYNAPPAYGQPS--YG--AYGAAP-PGGYYGQ--VEEKKKSKFGG 228
           PYY+ APP    PY      PAYGQP   YG  AYG  P   G YGQ  VE+ +K    G
Sbjct: 180 PYYSNAPPYGQDPYRQ----PAYGQPQPRYGDPAYGQGPYAQGPYGQTVVEQPQKKSGMG 235

Query: 229 MGTGLAVGAVGGILGGLALAEGVDALEDHIADEAAEKV 266
           MGTGLAVGAV G+LGGLA++EGVDALEDHIAD+  +++
Sbjct: 236 MGTGLAVGAVAGVLGGLAISEGVDALEDHIADDVEDRI 273

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490466|ref|XP_003634095.1| PREDICTED: uncharacterized protein LOC100852496 [Vitis vinifera] gi|147821140|emb|CAN62171.1| hypothetical protein VITISV_014432 [Vitis vinifera]

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 164/279 (58%), Positives = 206/279 (73%), Gaps = 24/279 (8%)

Query: 1   MASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLA 60
           MA R+E+++ I+SAKDLKNVNWRHG  +PYAV+WV+PN KCSTKVD +GDT P W+ETL 
Sbjct: 1   MAPRFELKLKISSAKDLKNVNWRHGSLKPYAVVWVEPNAKCSTKVDHDGDTFPSWNETLH 60

Query: 61  IPLPGPVDDDTTLIIDVVH--AGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR 118
           IP+P  + DD+ L +D+VH  + +E+DTK ++GSA+L L+DV++DVG G  A  TL+L+R
Sbjct: 61  IPVPSSI-DDSALYLDIVHVKSDDEDDTKPMVGSARLFLRDVVDDVGFGVEAFRTLELRR 119

Query: 119 PSGRPHGKVDVKVAVRESRYAPPGAYHTPPYGV-PPSGSR--DYPAPPPYGYPYGRPPQD 175
           PSGRP GKVDV+V+VR+ RY  P  Y+T PYGV PP G+R   Y  PP     YG PP D
Sbjct: 120 PSGRPQGKVDVEVSVRDLRYRAPEPYYTAPYGVPPPPGTRGAGYADPP----AYGAPPPD 175

Query: 176 PYYATAPPPSGYPYGAYNAPPAYG--QPSYGAYGAAPPGGYYGQ---VEEKKKSKFGGMG 230
           PYY+ A P S  PYG     PAYG  +P+YG YG     G YGQ   VEEKKK    GMG
Sbjct: 176 PYYSNAAPYSHSPYGQ----PAYGYQEPTYG-YGQ----GTYGQTVVVEEKKKKSGMGMG 226

Query: 231 TGLAVGAVGGILGGLALAEGVDALEDHIADEAAEKVEDD 269
           TGLAVGAV G+LGGLA+AEGVDALED+IA++ AE++ED+
Sbjct: 227 TGLAVGAVAGVLGGLAIAEGVDALEDNIAEDVAERIEDE 265

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147836228|emb|CAN68775.1| hypothetical protein VITISV_006805 [Vitis vinifera]

 Score =  282 bits (722), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 165/278 (59%), Positives = 207/278 (74%), Gaps = 17/278 (6%)

Query: 1   MASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLA 60
           MA RYE+E+ I+SAKDLKNVNWRHG  +PY V+WVDP  K STKVD++GDT P W+ETL 
Sbjct: 1   MAGRYEIELIISSAKDLKNVNWRHGSLKPYVVVWVDPAAKLSTKVDNDGDTFPCWNETLL 60

Query: 61  IPLPGPVDDDTTLIIDVVH--AGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR 118
           IP+P  + +D+TL +DVVH  A +E+DTK ++GSA+L L+DV++DVG G +A  TL+L+R
Sbjct: 61  IPVPSRI-EDSTLYLDVVHLKADDEDDTKPVVGSARLFLRDVVDDVGFGAQAIRTLELRR 119

Query: 119 PSGRPHGKVDVKVAVRESRYAPPGAYHTPPYGV-PPSGSR--DYPAPPPYGYPYGRPPQD 175
           PSGRPHGKV+VKV+VR+ RY  PG+ ++PPYGV PP+G+R   Y A P Y  PYG PP D
Sbjct: 120 PSGRPHGKVEVKVSVRDPRYXAPGSAYSPPYGVPPPAGTRGAXYAASPAYATPYGAPPPD 179

Query: 176 PYYATAPPPSGYPYGAYNAPPAYGQPS--YG--AYGAAP-PGGYYGQ--VEEKKKSKFGG 228
           PYY+ APP    PY      PAYGQP   YG  AYG  P   G YGQ  VE+ +K    G
Sbjct: 180 PYYSNAPPYGQDPYRQ----PAYGQPQPRYGDPAYGQGPYAQGPYGQTVVEQPQKKSGMG 235

Query: 229 MGTGLAVGAVGGILGGLALAEGVDALEDHIADEAAEKV 266
           MGTGLAVGAV G+LGGLA++EGVDALEDHIAD+  +++
Sbjct: 236 MGTGLAVGAVAGVLGGLAISEGVDALEDHIADDVEDRI 273

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561526|ref|XP_003549032.1| PREDICTED: uncharacterized protein LOC100805876 [Glycine max]

 Score =  272 bits (696), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 154/277 (55%), Positives = 188/277 (67%), Gaps = 21/277 (7%)

Query: 1   MASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLA 60
           MASRYE+E+ + SA+ LKNVNWRHGPNRPYAV+WVDP  KCST+VD++GDT   WD+TL 
Sbjct: 1   MASRYELELKLASARGLKNVNWRHGPNRPYAVVWVDPRNKCSTRVDEDGDTEATWDQTLL 60

Query: 61  IPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPS 120
           IPLP    ++ TL +D VHAG+EEDT+ LIG+A+LKL D++++VG+GE  + TL LKRPS
Sbjct: 61  IPLPPEPLENLTLYVDAVHAGSEEDTEPLIGAAQLKLVDILDEVGVGESVNRTLSLKRPS 120

Query: 121 GRPHGKVDVKVAVRESRYAPPGAYHTPPYGVPPSGSRDYPAPPPYGYPYGRPPQDPYYAT 180
           GRP GKVDV V +RE  Y   G Y+ P YGV     RDY AP   GY            +
Sbjct: 121 GRPQGKVDVNVVIREFGYRAHGGYYAPSYGVR---ERDYSAPVQDGYN-----------S 166

Query: 181 APPPSGYPYGAYNAPPAYGQPSYGAYGAAPPGGYYGQVEEKKKSKFGGMGTGLAVGAVGG 240
           AP  + Y  G       Y  P   +YG     GY    EEKK +KFGGMGTGLAVGAV G
Sbjct: 167 APRTASYGQG-------YAGPQTASYGQGSGYGYGYDQEEKKSNKFGGMGTGLAVGAVAG 219

Query: 241 ILGGLALAEGVDALEDHIADEAAEKVEDDLGYDGDDF 277
           +LGG+AL EG + +ED I D+ AE+VEDDLGYD DDF
Sbjct: 220 VLGGIALVEGAEYVEDKITDDVAERVEDDLGYDEDDF 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147859725|emb|CAN78886.1| hypothetical protein VITISV_002549 [Vitis vinifera]

 Score =  270 bits (691), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 157/269 (58%), Positives = 195/269 (72%), Gaps = 24/269 (8%)

Query: 1   MASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLA 60
           MA R+E+++ I+SAKDLKNVNWRHG  +PYAV+WV+PN KCSTKVD +GDT P W+ETL 
Sbjct: 1   MAPRFELKLKISSAKDLKNVNWRHGSLKPYAVVWVEPNAKCSTKVDHDGDTFPSWNETLH 60

Query: 61  IPLPGPVDDDTTLIIDVVH--AGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR 118
           IP+P  + DD+ L +D+VH  + +E+DTK ++GSA+L L+DV++DVG G  A  TL+L+R
Sbjct: 61  IPVPSSI-DDSALYLDIVHVKSDDEDDTKPMVGSARLFLRDVVDDVGFGVEAFRTLELRR 119

Query: 119 PSGRPHGKVDVKVAVRESRYAPPGAYHTPPYGV-PPSGSR--DYPAPPPYGYPYGRPPQD 175
           PSGRP GKVDV+V+V++ RY  P  Y+T PYGV PP G+R   Y  PP     YG PP D
Sbjct: 120 PSGRPQGKVDVEVSVKDLRYRAPEPYYTAPYGVPPPPGTRGAAYADPP----AYGAPPPD 175

Query: 176 PYYATAPPPSGYPYGAYNAPPAYG--QPSYGAYGAAPPGGYYGQ---VEEKKKSKFGGMG 230
           PYY+ A P    PYG     PAYG  +P+YG YG     G YGQ   VEEKKK    GMG
Sbjct: 176 PYYSNAAPYGHSPYGQ----PAYGYQEPTYG-YGQ----GLYGQTVVVEEKKKKSGMGMG 226

Query: 231 TGLAVGAVGGILGGLALAEGVDALEDHIA 259
           T LAVGAV G+LGGLA+AEGVDALED+IA
Sbjct: 227 TXLAVGAVAGVLGGLAIAEGVDALEDNIA 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464609|ref|XP_002275480.1| PREDICTED: uncharacterized protein LOC100242355 [Vitis vinifera]

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 157/269 (58%), Positives = 195/269 (72%), Gaps = 24/269 (8%)

Query: 1   MASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLA 60
           MA R+E+++ I+SAKDLKNVNW HG  +PYAV+WV+PN KCSTKVD +GDT P W+ETL 
Sbjct: 1   MAPRFELKLKISSAKDLKNVNWCHGSLKPYAVVWVEPNAKCSTKVDHDGDTFPSWNETLH 60

Query: 61  IPLPGPVDDDTTLIIDVVH--AGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR 118
           IP+P  + DD+ L +D+VH  + +E+DTK ++GSA+L L+DV++DVG G  A  TL+L+R
Sbjct: 61  IPVPSSI-DDSALYLDIVHVKSDDEDDTKPMVGSARLFLRDVVDDVGFGVEAFRTLELRR 119

Query: 119 PSGRPHGKVDVKVAVRESRYAPPGAYHTPPYGV-PPSGSRD--YPAPPPYGYPYGRPPQD 175
           PSGRP GKVDV+V+VR+ R+  P  Y+T PYGV PP G+R   Y  PP     YG PP D
Sbjct: 120 PSGRPQGKVDVEVSVRDLRHRAPEPYYTAPYGVPPPPGTRGAAYADPP----AYGAPPPD 175

Query: 176 PYYATAPPPSGYPYGAYNAPPAYG--QPSYGAYGAAPPGGYYGQ---VEEKKKSKFGGMG 230
           PYY+ A P    PYG     PAYG  +P+YG YG     G YGQ   VEEKKK    GMG
Sbjct: 176 PYYSNAAPYGHSPYGQ----PAYGYQEPTYG-YGQ----GSYGQTVVVEEKKKKSGMGMG 226

Query: 231 TGLAVGAVGGILGGLALAEGVDALEDHIA 259
           TGLAVGAV G+LGGLA+AEGVDALED+IA
Sbjct: 227 TGLAVGAVAGVLGGLAIAEGVDALEDNIA 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808401|ref|XP_002872084.1| hypothetical protein ARALYDRAFT_910412 [Arabidopsis lyrata subsp. lyrata] gi|297317921|gb|EFH48343.1| hypothetical protein ARALYDRAFT_910412 [Arabidopsis lyrata subsp. lyrata]

 Score =  263 bits (671), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 156/279 (55%), Positives = 184/279 (65%), Gaps = 51/279 (18%)

Query: 1   MASR-YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETL 59
           M+SR  EVEVTI+SAKD+KNVNWR+GPN+PYAV+WVDP  K ST+V+++GDTCP W+ET 
Sbjct: 1   MSSRGREVEVTISSAKDIKNVNWRNGPNKPYAVVWVDPTYKSSTRVEEDGDTCPTWNETF 60

Query: 60  AIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP 119
            IPLP   DDD  + ID+VHAG E++TK LIGSA L L+DVI+DVG G     TLKLKRP
Sbjct: 61  VIPLPPANDDDDKVYIDIVHAGGEKNTKPLIGSAHLSLRDVIDDVGFGVPFMKTLKLKRP 120

Query: 120 SGRPHGKVDVKVAVRESRYAP-PGAYHTPPYGVPPSGSRDYPAPPPYGYPYGRPPQDPYY 178
           SGRPHGK+++ V VRE RY P PG+YH PP  V             YG PY         
Sbjct: 121 SGRPHGKLELTVTVREPRYHPAPGSYHAPPQTV-------------YGEPY--------- 158

Query: 179 ATAPPPSGYPYGAYNAPPAYGQPSYGAYGAAPPGGYYGQVEEKKKSKFGGMGTGLAVGAV 238
             AP  S            Y QP    YG AP          +K SKFGGMGTGLAVGAV
Sbjct: 159 --APSHS------------YVQP---GYGYAP----------EKGSKFGGMGTGLAVGAV 191

Query: 239 GGILGGLALAEGVDALEDHIADEAAEKVEDDLGYDGDDF 277
            G+LGG+ALAEG++A+ED IA+EAAEKVEDDL    D F
Sbjct: 192 AGVLGGVALAEGLEAVEDKIAEEAAEKVEDDLDAGEDYF 230

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:2172828	219	AT5G23950 "AT5G23950" [Arabido	0.516	0.652	0.585	4.1e-43
TAIR|locus:2025002	352	AT1G07310 "AT1G07310" [Arabido	0.501	0.394	0.365	1e-20
TAIR|locus:2124933	250	AT4G01200 "AT4G01200" [Arabido	0.476	0.528	0.235	4.2e-06
TAIR|locus:2041654	401	AT2G13350 "AT2G13350" [Arabido	0.440	0.304	0.251	6.2e-06
TAIR|locus:2036004	324	SRC2 "AT1G09070" [Arabidopsis	0.505	0.432	0.227	0.00035

TAIR|locus:2172828 AT5G23950 "AT5G23950" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
 Identities = 86/147 (58%), Positives = 104/147 (70%)

Query:     6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPG 65
             EVEVTI+SAKD+KNVNWR+GPN+PYAV+W+DP  K ST+VD++G+TC  W+ET  I LP 
Sbjct:     7 EVEVTISSAKDIKNVNWRNGPNKPYAVVWIDPKFKSSTRVDEDGNTCTTWNETFVIALPP 66

Query:    66 PXXXXXXXXXXXXHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHG 125
                          HAG EE+TK LIGSA L L+DVI+DVG G     TLKLKRPSGRP G
Sbjct:    67 ANDDDDKVYINIVHAGREENTKPLIGSAHLSLRDVIDDVGFGVPFMKTLKLKRPSGRPQG 126

Query:   126 KVDVKVAVRESRYAPPGAYHTPPYGVP 152
             K+DV V VRE+    PG+ +  PYG P
Sbjct:   127 KLDVTVTVRET----PGSNYALPYGDP 149

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2025002 AT1G07310 "AT1G07310" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 53/145 (36%), Positives = 82/145 (56%)

Query:     6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPG 65
             ++ VT+ SAK LKNVNWR+G  +PY VL++D +   ST+ DD     P W+E + +PL  
Sbjct:     8 DLVVTVVSAKHLKNVNWRNGDLKPYVVLYLDQDHPLSTRSDDSSSIKPVWNERITLPLTR 67

Query:    66 PXXXXXXXXXXXXHAGNEEDTKKLIGSAKLKLKDVINDVG--LGERASLTLKLKRPSGRP 123
                          H+ + +  K L+GS +  L  +I+  G  + E  + +L+L RPSGRP
Sbjct:    68 -SVHESVLNIEVFHSNSSDLAKTLVGSVRFPLARLIDSDGSMIPELIN-SLELVRPSGRP 125

Query:   124 HGKVDVKVAVRESRYAPPGAYHTPP 148
              GK+ +K+A+++    PP   H PP
Sbjct:   126 QGKIRLKLAIKDRPIPPP--QHPPP 148

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2124933 AT4G01200 "AT4G01200" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 32/136 (23%), Positives = 63/136 (46%)

Query:     7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPL-PG 65
             +E+ + SA+ LK    +    + YA +WVD + K  T++D  G   P W++     + P 
Sbjct:     7 LEINLISAQGLKEPTGKLRRLQTYASVWVDSSSKLRTRIDRIGSENPIWNDKFVFQVSPE 66

Query:    66 PXXXXXXXXXXXXHA-GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPH 124
                          +A G   D   LIG+ +  + + +    +   + + L+++RPSG+ H
Sbjct:    67 FLSSETSGVSIEIYAVGYLRD--HLIGTVRFLVSNFLPTAAVKVPSLVALQIRRPSGKFH 124

Query:   125 GKVDVKVAVRESRYAP 140
             G +++   V ++   P
Sbjct:   125 GVLNIAAMVMDASELP 140

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2041654 AT2G13350 "AT2G13350" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 32/127 (25%), Positives = 59/127 (46%)

Query:     7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP 66
             +E+ I SA++L  V       + YA+ W+DP +K +T+VD+ G T P W++     L   
Sbjct:    10 LELNIISAQELAPVA---RCMKTYAIAWIDPERKLTTRVDNTGGTSPTWNDKFVFRLDEE 66

Query:    67 XXXXXXXXXXXXHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGK 126
                                    +G+ +  + D+++         +TL++ R SGRPHG 
Sbjct:    67 ALYDATSIVVIEIYALHWFKDIHVGTVQALISDLVSPSSA--MRFVTLEVLRASGRPHGL 124

Query:   127 VDVKVAV 133
             +++ V +
Sbjct:   125 LNIAVGL 131

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2036004 SRC2 "AT1G09070" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 0.00035, Sum P(2) = 0.00035
 Identities = 33/145 (22%), Positives = 59/145 (40%)

Query:     7 VEVTITSAKDLKNVNWRHGPNRPYAVLWV--DPNKKCSTKVDDEGDTCPYWDETLAIPLP 64
             +++TI SA+DLK+V    G    YAV+ +  D   K  TKVD +  T P W   + + + 
Sbjct:     6 LDLTIISAEDLKDVQLI-GKQDLYAVVSINGDARTKQKTKVDKDCGTKPKWKHQMKLTVD 64

Query:    65 GPXXXXXXXXXXXXHAGNEEDT-KKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP 123
                              +      K +G   + +K++++     E  ++T  ++ P+G+ 
Sbjct:    65 DAAARDNRLTLVFEIVADRPIAGDKPVGEVSVPVKELLDQNKGDEEKTVTYAVRLPNGKA 124

Query:   124 HGKVDVKVAVRES-RYAPPGAYHTP 147
              G +       E   Y      H P
Sbjct:   125 KGSLKFSFKFGEKYTYGSSSGPHAP 149

GO:0000326 "protein storage vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=RCA;TAS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	277
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	2e-35
cd00030	102	cd00030, C2, C2 domain	2e-12
pfam00168	85	pfam00168, C2, C2 domain	1e-09
smart00239	101	smart00239, C2, Protein kinase C conserved region	4e-09
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	7e-08
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	4e-05
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	1e-04
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	2e-04
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	0.003

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score =  123 bits (310), Expect = 2e-35
 Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 5/127 (3%)

Query: 6   EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPG 65
            +E+TI SA+DLKNVN   G  + YAV+W+DP+ K ST VD +G T P W+ETL  PL  
Sbjct: 1   TLEITIISAEDLKNVNLF-GKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDE 59

Query: 66  PV--DDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVG-LGERASLTLKLKRPSGR 122
            +       L I+V          KLIG  ++ LKD+++     GE   L+ +L+RPSG+
Sbjct: 60  RLLQQGRLALTIEVYCERP-SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGK 118

Query: 123 PHGKVDV 129
           P G ++ 
Sbjct: 119 PQGVLNF 125

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 61.7 bits (150), Expect = 2e-12
 Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 7   VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP 66
           + VT+  A++L   +     + PY  + +   +K  TKV  +    P W+ET   P+  P
Sbjct: 1   LRVTVIEARNLPAKDLNGKSD-PYVKVSLGGKQKFKTKV-VKNTLNPVWNETFEFPVLDP 58

Query: 67  VDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGER 109
             +  TL ++V    +       +G  ++ L ++++    GE 
Sbjct: 59  --ESDTLTVEVWDK-DRFSKDDFLGEVEIPLSELLDSGKEGEL 98

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 7  VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCS--TKVDDEGDTCPYWDETLAIPLP 64
          + VT+ SAK+L   +     + PY  + +   KK +  TKV  +    P W+ET    + 
Sbjct: 1  LRVTVISAKNLPPKDLNGKSD-PYVKVSLGGQKKDTKKTKV-VKNTLNPVWNETFTFEV- 57

Query: 65 GPVDDDTTLIIDVVHAGNEEDTKKLIGSAK 94
            + +   L I+V            IG   
Sbjct: 58 -TLPELAELRIEVYDYDRFGK-DDFIGEVT 85

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 52.5 bits (126), Expect = 4e-09
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 7   VEVTITSAKDLKNVNWRHGPNRPYAVLWVDP--NKKCSTKVDDEGDTCPYWDETLAIPLP 64
           + V I SA++L   + + G + PY  + +D    +K  TKV  +    P W+ET    +P
Sbjct: 2   LTVKIISARNLPPKD-KGGKSDPYVKVSLDGDPKEKKKTKVV-KNTLNPVWNETFEFEVP 59

Query: 65  GPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVIN 102
            P  +   L I+V            IG   + L D++ 
Sbjct: 60  PP--ELAELEIEVYDKDRFGR-DDFIGQVTIPLSDLLL 94

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 49.9 bits (120), Expect = 7e-08
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 15/128 (11%)

Query: 16  DLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLII 75
            LKN+    G     A +     KK +  +++E +  P W+ET   PL G  D D +L I
Sbjct: 4   SLKNLPGLKGKGDRIAKVTFRGVKKKTRVLENELN--PVWNETFEWPLAGSPDPDESLEI 61

Query: 76  DVVHAGNEED--TKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAV 133
            V    + E     +LIGSA + L+D++++        +T  L   +GRP       +  
Sbjct: 62  VVK---DYEKVGRNRLIGSATVSLQDLVSEG----LLEVTEPLLDSNGRP---TGATI-S 110

Query: 134 RESRYAPP 141
            E  Y PP
Sbjct: 111 LEVSYQPP 118

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 15/121 (12%)

Query: 4   RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD--PNKKCSTKVDDEGDTCPYWDETLAI 61
           + ++++T+ SAK LK+ +    P+ PY  + VD  P KK  T+V  +  + P W+E   +
Sbjct: 1   KSQLQITVESAK-LKSNSKSFKPD-PYVEVTVDGQPPKK--TEVS-KKTSNPKWNEHFTV 55

Query: 62  PLPGPVDDDTTLIIDVV-HAGNEEDTKKLIGSAKLKLKDVI-NDVGLGERASLTLKLKRP 119
                V   +TL   V  H   + D   L+G A L L D++ N  G  E   LTL L   
Sbjct: 56  L----VTPQSTLEFKVWSHHTLKADV--LLGEASLDLSDILKNHNGKLENVKLTLNLSSE 109

Query: 120 S 120
           +
Sbjct: 110 N 110

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 33/111 (29%)

Query: 5   YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP-------NKKCSTKVDDEGDTCPYWDE 57
           ++V V +  A+ L   N             +DP        +K  T V  +G  CP+++E
Sbjct: 4   FQVRVRVIEARQLVGGN-------------IDPVVKVEVGGQKKYTSVK-KGTNCPFYNE 49

Query: 58  TLAIPLPGPVDD--DTTLIIDVVHAGN-EEDTKKLIGSAKLKLKDVINDVG 105
                     D+  D  + I V  + +   DT  LIGS KL       DVG
Sbjct: 50  YFFFNFHESPDELFDKIIKISVYDSRSLRSDT--LIGSFKL-------DVG 91

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 14/124 (11%)

Query: 7   VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCS-TKVDDEGDTC-PYWDETLAIPLP 64
           + VTI SA+ LK  +   G   PY    +   ++ + TKV    DT  P W+ET  I   
Sbjct: 4   LAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKK--DTSNPVWNETKYI--- 58

Query: 65  GPVDDDT-TLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP 123
             V+  T  L + V    N++   KLIG+A+  L  ++ +    E+ +LT  L R +G+P
Sbjct: 59  -LVNSLTEPLNLTVYDF-NDKRKDKLIGTAEFDLSSLLQN---PEQENLTKNLLR-NGKP 112

Query: 124 HGKV 127
            G++
Sbjct: 113 VGEL 116

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 10/77 (12%)

Query: 9  VTITSAKDLKNVNWRHGPNRPY--AVLWVDPN----KKCSTKVDDEGDTCPYWDETLAIP 62
          V +  A++L   +   G + PY    L         KK S K   +G   P ++E  +  
Sbjct: 18 VVVLKARNLPPSD-GKGLSDPYVKVSLLQGGKKLKKKKTSVK---KGTLNPVFNEAFSFD 73

Query: 63 LPGPVDDDTTLIIDVVH 79
          +P    ++ +L+I VV 
Sbjct: 74 VPAEQLEEVSLVITVVD 90

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.88
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.86
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.85
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.84
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.84
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.84
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.83
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.82
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.82
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.82
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.82
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.82
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.81
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.81
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.81
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.8
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.8
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.8
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.8
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.79
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.79
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.79
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.79
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.79
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.78
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.78
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.78
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.77
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.77
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.77
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.77
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.77
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.77
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.76
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.76
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.76
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.75
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.75
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.75
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.75
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.75
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.75
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.74
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.74
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.74
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.74
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.74
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.74
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.73
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.73
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.73
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.73
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.73
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.72
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.72
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.71
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.71
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.7
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.7
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.7
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.69
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.69
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.69
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.68
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.68
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.68
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.66
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.66
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.65
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.65
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.65
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.64
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.64
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.64
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.64
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.63
PLN03008	868	Phospholipase D delta	99.63
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.63
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.63
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.63
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.62
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.62
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.62
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.61
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.61
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.61
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.6
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.6
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.6
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.59
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.56
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.56
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.56
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.48
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.48
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.47
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.46
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.35
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.35
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.32
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	99.31
PLN02270	808	phospholipase D alpha	99.3
PLN02223	537	phosphoinositide phospholipase C	99.3
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.3
PLN02952	599	phosphoinositide phospholipase C	99.23
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.19
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.17
PLN02230	598	phosphoinositide phospholipase C 4	99.12
PLN02222	581	phosphoinositide phospholipase C 2	99.07
PLN02228	567	Phosphoinositide phospholipase C	99.06
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	99.06
KOG0169	746	consensus Phosphoinositide-specific phospholipase	99.01
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.99
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.99
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.96
PLN02352	758	phospholipase D epsilon	98.82
KOG3837	523	consensus Uncharacterized conserved protein, conta	98.66
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.63
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.4
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.38
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.35
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	98.32
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	98.31
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.18
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.99
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	97.64
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.64
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	97.56
smart00157	217	PRP Major prion protein. The prion protein is a ma	97.48
PLN02964	644	phosphatidylserine decarboxylase	97.48
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	97.42
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	97.35
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	97.3
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.23
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	97.18
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.14
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	97.13
PF15627	156	CEP76-C2: CEP76 C2 domain	97.11
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	97.1
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	97.08
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	97.05
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	96.9
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	96.87
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	96.8
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	96.62
KOG1452	442	consensus Predicted Rho GTPase-activating protein	96.47
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	96.33
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	96.22
KOG1327	529	consensus Copine [Signal transduction mechanisms]	95.79
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	95.73
PF09849	247	DUF2076: Uncharacterized protein conserved in bact	95.45
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	95.18
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	95.04
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	94.9
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	94.21
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	92.54
KOG1327	529	consensus Copine [Signal transduction mechanisms]	89.98
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	86.33
PF14924	112	DUF4497: Protein of unknown function (DUF4497)	85.36
PTZ00447	508	apical membrane antigen 1-like protein; Provisiona	85.29
KOG3294	261	consensus WW domain binding protein WBP-2, contain	84.06
PF07162	168	B9-C2: Ciliary basal body-associated, B9 protein;	83.87
PF09849	247	DUF2076: Uncharacterized protein conserved in bact	81.0

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.88  E-value=7.4e-22  Score=155.55  Aligned_cols=118  Identities=19%  Similarity=0.282  Sum_probs=96.4

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      .+|+|+|++|++|++.+ + +++||||++++. +.+++|+++.+++.||+|||+|.|.|...   ...|.|+|||++. +
T Consensus         2 g~L~v~v~~Ak~l~~~~-~-g~sDPYv~i~lg-~~~~kT~v~~~~~~nP~WNe~F~f~v~~~---~~~l~~~V~d~d~-~   74 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-L-TRMDPYCRIRVG-HAVYETPTAYNGAKNPRWNKTIQCTLPEG---VDSIYIEIFDERA-F   74 (121)
T ss_pred             cEEEEEEEEccCCCcCC-C-CCCCceEEEEEC-CEEEEeEEccCCCCCCccCeEEEEEecCC---CcEEEEEEEeCCC-C
Confidence            47999999999998877 4 899999999994 67789999656689999999999999752   3579999999997 4


Q ss_pred             CCCceeEEEEEecce-eccccCCCceeeEEEEeecCC-CCCceEEEEEEEE
Q 023810           85 DTKKLIGSAKLKLKD-VINDVGLGERASLTLKLKRPS-GRPHGKVDVKVAV  133 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~-l~~~~~~~~~~~~~~~L~~~s-g~~~G~L~l~v~~  133 (277)
                      ++|++||++.|+|.+ +...    +....||.|...+ .+..|.|+|+++|
T Consensus        75 ~~dd~iG~~~i~l~~~~~~g----~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          75 TMDERIAWTHITIPESVFNG----ETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             cCCceEEEEEEECchhccCC----CCccccEeCcCccCCCCceEEEEEEeC
Confidence            788999999999964 4433    3356788886543 3467999999985

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.86  E-value=1e-20  Score=150.21  Aligned_cols=124  Identities=20%  Similarity=0.349  Sum_probs=100.9

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCC-CCCCceEEEEEEEccCCC
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP-VDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~-~l~~~~L~v~V~d~~~~~   84 (277)
                      .|+|+|++|++|...+.. +.+||||++++. ..+.+|++ +.++.||+|||+|.|.+... .+.+..|.|+|||.+.+.
T Consensus         1 ~L~V~vi~A~~L~~~d~~-g~~dpyv~v~~~-~~~~rT~v-~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~   77 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQ-GSSSAYVELDFD-GQKKRTRT-KPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG   77 (127)
T ss_pred             CeEEEEEEeeCCCCCCCC-CCcCcEEEEEEC-CEEeccee-EcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence            489999999999987754 889999999995 56779999 77899999999999999752 233568999999988642


Q ss_pred             CCCceeEEEEEecceeccccCCCceeeEEEEeecC--CCCCceEEEEEEEEEe
Q 023810           85 DTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP--SGRPHGKVDVKVAVRE  135 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~--sg~~~G~L~l~v~~~~  135 (277)
                      ..++|||++.|+|+++...   +.....||.|.++  .++.+|+|.|++.|.+
T Consensus        78 ~~d~~lG~v~i~l~~l~~~---~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~  127 (127)
T cd04022          78 RRRSFLGRVRISGTSFVPP---SEAVVQRYPLEKRGLFSRVRGEIGLKVYITD  127 (127)
T ss_pred             CCCCeeeEEEEcHHHcCCC---CCccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence            2789999999999998732   3335688888654  4578999999999863

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.85  E-value=1.9e-20  Score=148.49  Aligned_cols=120  Identities=29%  Similarity=0.493  Sum_probs=96.8

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCC---CCCCceEEEEEEEccCC
Q 023810            7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP---VDDDTTLIIDVVHAGNE   83 (277)
Q Consensus         7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~---~l~~~~L~v~V~d~~~~   83 (277)
                      |+|+|++|++|...+.. +.+||||++++. ..+.+|++ +.++.||+|||+|.|.+...   ......|.|+|||++. 
T Consensus         1 ~~V~V~~A~~L~~~d~~-g~~dpYv~v~l~-~~~~kT~v-~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~-   76 (126)
T cd08682           1 VQVTVLQARGLLCKGKS-GTNDAYVIIQLG-KEKYSTSV-KEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL-   76 (126)
T ss_pred             CEEEEEECcCCcCCCCC-cCCCceEEEEEC-Ceeeeeee-ecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc-
Confidence            58999999999987754 899999999995 67789999 67789999999999998752   2345789999999986 


Q ss_pred             CCCCceeEEEEEecceeccccCCCceeeEEEEeecC---CCCCceEEEEEEE
Q 023810           84 EDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP---SGRPHGKVDVKVA  132 (277)
Q Consensus        84 ~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~---sg~~~G~L~l~v~  132 (277)
                      .++++|||++.|+|+++....  +.....||.|...   ..+.+|+|.|+++
T Consensus        77 ~~~d~~iG~~~i~l~~l~~~~--~~~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          77 LGLDKFLGQVSIPLNDLDEDK--GRRRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             cCCCceeEEEEEEHHHhhccC--CCcccEEEECcCCCCCCccccceEEEEeC
Confidence            467899999999999987432  2335689999643   2356899999874

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.84  E-value=3.8e-20  Score=151.25  Aligned_cols=126  Identities=19%  Similarity=0.282  Sum_probs=102.1

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED   85 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~   85 (277)
                      .|+|+|++|++|...+.. +.+||||+++++ ..+.+|++..+++.||+|||+|.|.+..  ...+.|.|+||+.+. ..
T Consensus         1 ~L~V~Vi~A~~L~~~d~~-g~sDPYV~v~l~-~~~~kTk~~~~~t~nP~WNE~F~f~v~~--~~~~~l~v~V~d~~~-~~   75 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKN-RVPEVFVKAQLG-NQVLRTRPSQTRNGNPSWNEELMFVAAE--PFEDHLILSVEDRVG-PN   75 (150)
T ss_pred             CEEEEEEEeECCCCCCCC-CCCCeEEEEEEC-CEEeeeEeccCCCCCCcccCcEEEEecC--ccCCeEEEEEEEecC-CC
Confidence            389999999999988865 899999999996 5778999854557999999999999965  234689999999886 35


Q ss_pred             CCceeEEEEEecceeccccCCCceeeEEEEeecCCC--------CCceEEEEEEEEEec
Q 023810           86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSG--------RPHGKVDVKVAVRES  136 (277)
Q Consensus        86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg--------~~~G~L~l~v~~~~~  136 (277)
                      ++++||++.|+|+++......+.....||+|.+..+        +.+|+|+|+++|...
T Consensus        76 ~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~  134 (150)
T cd04019          76 KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG  134 (150)
T ss_pred             CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence            789999999999998764333344578999976543        568999999999754

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.84  E-value=6.8e-20  Score=144.25  Aligned_cols=118  Identities=20%  Similarity=0.373  Sum_probs=99.5

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCC
Q 023810            7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDT   86 (277)
Q Consensus         7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~   86 (277)
                      |+|+|++|++|...+.. +.+||||++.++.....+|++ +.++.||.|||+|.|.+..  + ...|.|+|||++. ..+
T Consensus         2 L~v~v~~a~~L~~~d~~-g~~Dpyv~v~~~~~~~~kT~~-~~~t~nP~Wne~f~f~v~~--~-~~~l~~~v~D~d~-~~~   75 (121)
T cd04042           2 LDIHLKEGRNLAARDRG-GTSDPYVKFKYGGKTVYKSKT-IYKNLNPVWDEKFTLPIED--V-TQPLYIKVFDYDR-GLT   75 (121)
T ss_pred             eEEEEEEeeCCCCcCCC-CCCCCeEEEEECCEEEEEeee-ccCCCCCccceeEEEEecC--C-CCeEEEEEEeCCC-CCC
Confidence            79999999999988865 899999999996556789998 7789999999999999864  2 4689999999986 468


Q ss_pred             CceeEEEEEecceeccccCCCceeeEEEEeecCC-CCCceEEEEEEEEE
Q 023810           87 KKLIGSAKLKLKDVINDVGLGERASLTLKLKRPS-GRPHGKVDVKVAVR  134 (277)
Q Consensus        87 d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~s-g~~~G~L~l~v~~~  134 (277)
                      +++||++.++|.++...    .....|++|.... .+..|+|.|.++|.
T Consensus        76 ~~~iG~~~~~l~~l~~~----~~~~~~~~L~~~~~~~~~G~l~l~~~~~  120 (121)
T cd04042          76 DDFMGSAFVDLSTLELN----KPTEVKLKLEDPNSDEDLGYISLVVTLT  120 (121)
T ss_pred             CcceEEEEEEHHHcCCC----CCeEEEEECCCCCCccCceEEEEEEEEC
Confidence            89999999999998864    2356788887554 36799999999985

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.84  E-value=2.8e-20  Score=147.15  Aligned_cols=122  Identities=42%  Similarity=0.682  Sum_probs=101.2

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCC--CCceEEEEEEEccCC
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVD--DDTTLIIDVVHAGNE   83 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l--~~~~L~v~V~d~~~~   83 (277)
                      +|+|+|++|++|+..+.. +++||||++++....+.+|++..+++.||.|||+|.|.+....+  ....|.|+|||++. 
T Consensus         1 ~L~V~V~sA~~L~~~~~~-~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~-   78 (125)
T cd04051           1 TLEITIISAEDLKNVNLF-GKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP-   78 (125)
T ss_pred             CEEEEEEEcccCCCCCcc-cCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC-
Confidence            489999999999988754 89999999999654778999855678999999999999976321  25789999999986 


Q ss_pred             CCCCceeEEEEEecceeccccCCC-ceeeEEEEeecCCCCCceEEEE
Q 023810           84 EDTKKLIGSAKLKLKDVINDVGLG-ERASLTLKLKRPSGRPHGKVDV  129 (277)
Q Consensus        84 ~~~d~~iG~~~v~L~~l~~~~~~~-~~~~~~~~L~~~sg~~~G~L~l  129 (277)
                      ...++|||++.|+|.++....... +....||+|++++++.+|+|+|
T Consensus        79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence            367899999999999998765322 2357899999999999999975

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.83  E-value=1.2e-19  Score=141.94  Aligned_cols=117  Identities=24%  Similarity=0.367  Sum_probs=96.2

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED   85 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~   85 (277)
                      .|+|+|++|++|+..+.. +++||||+++++ ..+.+|++..+++.||+|||+|.|.+...  ....|.|+|||++.. +
T Consensus         2 ~L~V~v~~A~~L~~~~~~-~~~dpyv~v~~~-~~~~kT~~~~~~~~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~-~   76 (118)
T cd08681           2 TLVVVVLKARNLPNKRKL-DKQDPYCVLRIG-GVTKKTKTDFRGGQHPEWDEELRFEITED--KKPILKVAVFDDDKR-K   76 (118)
T ss_pred             EEEEEEEEccCCCCCCcC-CCCCceEEEEEC-CCccccccccCCCCCCccCceEEEEecCC--CCCEEEEEEEeCCCC-C
Confidence            699999999999988865 899999999995 56778887445678999999999999762  346899999998863 3


Q ss_pred             CCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEE
Q 023810           86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAV  133 (277)
Q Consensus        86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~  133 (277)
                       +++||++.|+|.++.....    ...|+.|.+ +++..|+|.|+++|
T Consensus        77 -~~~iG~~~~~l~~~~~~~~----~~~w~~L~~-~~~~~G~i~l~l~f  118 (118)
T cd08681          77 -PDLIGDTEVDLSPALKEGE----FDDWYELTL-KGRYAGEVYLELTF  118 (118)
T ss_pred             -CcceEEEEEecHHHhhcCC----CCCcEEecc-CCcEeeEEEEEEEC
Confidence             8999999999999876432    356777754 55789999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.82  E-value=2.9e-19  Score=142.77  Aligned_cols=123  Identities=15%  Similarity=0.257  Sum_probs=99.9

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC------CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEE
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN------KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVH   79 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~------~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d   79 (277)
                      .|+|+|++|++|...+.. +..||||++.+...      .+.+|++ ++++.||.|||+|.|.+..   ....|.|+|||
T Consensus         1 ~L~v~Vi~a~~L~~~d~~-~~~Dpyv~v~~~~~~~~~~~~~~kT~v-~~~t~nP~Wne~f~f~~~~---~~~~l~~~v~d   75 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIF-GASDPYVKISLYDPDGNGEIDSVQTKT-IKKTLNPKWNEEFFFRVNP---REHRLLFEVFD   75 (133)
T ss_pred             CEEEEEEEeECCCcccCC-CCcCcEEEEEEECCCCCCcccceeeeE-EcCCCCCcEeeEEEEEEcC---CCCEEEEEEEE
Confidence            489999999999988755 88999999999432      2468988 7889999999999999865   24679999999


Q ss_pred             ccCCCCCCceeEEEEEecceeccccCCC--ceeeEEEEeecC--CCCCceEEEEEEEEE
Q 023810           80 AGNEEDTKKLIGSAKLKLKDVINDVGLG--ERASLTLKLKRP--SGRPHGKVDVKVAVR  134 (277)
Q Consensus        80 ~~~~~~~d~~iG~~~v~L~~l~~~~~~~--~~~~~~~~L~~~--sg~~~G~L~l~v~~~  134 (277)
                      .+. .+.+++||++.|+|.++.......  .....||.|.+.  .++.+|+|+|+++|.
T Consensus        76 ~~~-~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~  133 (133)
T cd04033          76 ENR-LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL  133 (133)
T ss_pred             CCC-CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence            986 468899999999999988764322  124678888754  567899999999983

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.82  E-value=3.4e-19  Score=141.29  Aligned_cols=114  Identities=23%  Similarity=0.347  Sum_probs=92.0

Q ss_pred             EEEEEEEEeeC---CCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccC
Q 023810            6 EVEVTITSAKD---LKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN   82 (277)
Q Consensus         6 ~L~V~v~~A~~---L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~   82 (277)
                      .|+|+|++|++   |...+.. +++||||+++++ .++.||++ +.++.||+|||+|.|.+..   ....|.|+|||.+.
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~-g~sDPYv~i~~g-~~~~rTk~-~~~~~nP~WnE~f~f~v~~---~~~~l~v~V~d~d~   74 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGR-GSTDAYCVAKYG-PKWVRTRT-VEDSSNPRWNEQYTWPVYD---PCTVLTVGVFDNSQ   74 (126)
T ss_pred             CeEEEEEEeECCccccccccC-CCCCeeEEEEEC-CEEeEcCc-ccCCCCCcceeEEEEEecC---CCCEEEEEEEECCC
Confidence            38999999999   7777755 899999999994 77889999 7889999999999999965   23579999999885


Q ss_pred             CC-----CCCceeEEEEEecceeccccCCCceeeEEEEeecC---CCCCceEEEE
Q 023810           83 EE-----DTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP---SGRPHGKVDV  129 (277)
Q Consensus        83 ~~-----~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~---sg~~~G~L~l  129 (277)
                      ..     ..++|||++.|+|+++..+    .....||+|...   ..+..|+|.+
T Consensus        75 ~~~~~~~~~dd~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          75 SHWKEAVQPDVLIGKVRIRLSTLEDD----RVYAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             ccccccCCCCceEEEEEEEHHHccCC----CEEeeEEEeEeCCCCCccCCcEEEe
Confidence            31     3789999999999998764    335688998753   2455677764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.82  E-value=3.8e-19  Score=140.27  Aligned_cols=117  Identities=23%  Similarity=0.282  Sum_probs=96.3

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCC
Q 023810            7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDT   86 (277)
Q Consensus         7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~   86 (277)
                      |+|+|++|++|...     .+||||++.+. ..+.+|++ ++++.||+|||+|.|.+..  +....|.|+|||++..  +
T Consensus         2 L~V~Vi~a~~L~~~-----~~Dpyv~v~l~-~~~~kT~v-~~~t~nP~Wne~F~f~~~~--~~~~~L~~~v~d~d~~--~   70 (121)
T cd08378           2 LYVRVVKARGLPAN-----SNDPVVEVKLG-NYKGSTKA-IERTSNPEWNQVFAFSKDR--LQGSTLEVSVWDKDKA--K   70 (121)
T ss_pred             EEEEEEEecCCCcc-----cCCCEEEEEEC-Cccccccc-cCCCCCCccceEEEEEcCC--CcCCEEEEEEEeCCCC--c
Confidence            89999999999865     57999999995 57889999 7889999999999999864  3467899999999863  7


Q ss_pred             CceeEEEEEecceeccccC-CCceeeEEEEeecC-CCCCceEEEEEEEEE
Q 023810           87 KKLIGSAKLKLKDVINDVG-LGERASLTLKLKRP-SGRPHGKVDVKVAVR  134 (277)
Q Consensus        87 d~~iG~~~v~L~~l~~~~~-~~~~~~~~~~L~~~-sg~~~G~L~l~v~~~  134 (277)
                      ++|||++.|+|+++..... .+.....||.|.+. ..+.+|+|.|+|+|.
T Consensus        71 ~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~  120 (121)
T cd08378          71 DDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG  120 (121)
T ss_pred             CceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence            8999999999999875432 12234688999654 357899999999985

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.82  E-value=3.4e-19  Score=140.28  Aligned_cols=121  Identities=26%  Similarity=0.402  Sum_probs=98.2

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC-CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP-NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE   83 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~-~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~   83 (277)
                      ..|+|+|++|++|+..+...+.+||||+++++. ..+.+|++ +.++.||.|||+|.|.+..   ....|.|+|||.+. 
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~-~~~~~~P~Wne~~~~~v~~---~~~~l~~~v~d~~~-   76 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKV-KKDTSNPVWNETKYILVNS---LTEPLNLTVYDFND-   76 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeee-ecCCCCCcceEEEEEEeCC---CCCEEEEEEEecCC-
Confidence            479999999999986554446789999999965 47789999 7889999999999999873   35789999999986 


Q ss_pred             CCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEE
Q 023810           84 EDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVR  134 (277)
Q Consensus        84 ~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~  134 (277)
                      ..++++||++.++|.++......   ...++.| ..+++.+|+|+|+++|.
T Consensus        77 ~~~d~~iG~~~~~l~~l~~~~~~---~~~~~~~-~~~~k~~G~i~~~l~~~  123 (124)
T cd04044          77 KRKDKLIGTAEFDLSSLLQNPEQ---ENLTKNL-LRNGKPVGELNYDLRFF  123 (124)
T ss_pred             CCCCceeEEEEEEHHHhccCccc---cCcchhh-hcCCccceEEEEEEEeC
Confidence            36889999999999999876432   1233334 35778899999999985

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.82  E-value=6.6e-19  Score=138.88  Aligned_cols=118  Identities=19%  Similarity=0.278  Sum_probs=96.3

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCC
Q 023810            7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDT   86 (277)
Q Consensus         7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~   86 (277)
                      |.|+|++|++|+..+..++.+||||++.++.....+|++ +.++.||.|||+|.|.|..   ....|.|.|||++. ..+
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v-~~kt~~P~WnE~F~f~v~~---~~~~l~~~v~d~~~-~~~   76 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKT-VEKSLCPFFGEDFYFEIPR---TFRHLSFYIYDRDV-LRR   76 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeE-EECCCCCccCCeEEEEcCC---CCCEEEEEEEECCC-CCC
Confidence            789999999998764334788999999996455679999 7789999999999999975   24689999999997 468


Q ss_pred             CceeEEEEEecceeccccCCCceeeEEEEeec--CCCCCceEEEEEEEE
Q 023810           87 KKLIGSAKLKLKDVINDVGLGERASLTLKLKR--PSGRPHGKVDVKVAV  133 (277)
Q Consensus        87 d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~--~sg~~~G~L~l~v~~  133 (277)
                      +++||.+.|+|+++....    ....||.|..  ..++.+|+|.|+++|
T Consensus        77 ~~~iG~~~i~l~~l~~~~----~~~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          77 DSVIGKVAIKKEDLHKYY----GKDTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             CceEEEEEEEHHHccCCC----CcEeeEEEEccCCCCcccEEEEEEEEC
Confidence            899999999999987542    2467888864  345679999999875

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.81  E-value=3.9e-19  Score=140.50  Aligned_cols=118  Identities=20%  Similarity=0.327  Sum_probs=95.3

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED   85 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~   85 (277)
                      .|+|+|++|++|...+.. +.+||||++++++..+.+|++ ++++.||.|||+|.|.+..    ...|.|+|||++....
T Consensus         1 ~l~v~v~~A~~L~~~~~~-~~~dpyv~v~~~~~~~~kT~v-~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~~~   74 (123)
T cd08382           1 KVRLTVLCADGLAKRDLF-RLPDPFAVITVDGGQTHSTDV-AKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKFKK   74 (123)
T ss_pred             CeEEEEEEecCCCccCCC-CCCCcEEEEEECCccceEccE-EcCCCCCcccceEEEEeCC----CCEEEEEEEECCCCCC
Confidence            489999999999987755 899999999997677789999 7889999999999999964    5689999999886432


Q ss_pred             C-CceeEEEEEecceeccccCCCceeeEEEEeecC----CCCCceEEEEEEE
Q 023810           86 T-KKLIGSAKLKLKDVINDVGLGERASLTLKLKRP----SGRPHGKVDVKVA  132 (277)
Q Consensus        86 ~-d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~----sg~~~G~L~l~v~  132 (277)
                      . ++|||++.|+|.++......   ...|+.|+..    .++..|+|.++++
T Consensus        75 ~~d~~lG~~~i~l~~l~~~~~~---~~~~~~l~~~~~~~~~~~~G~v~~~~~  123 (123)
T cd08382          75 KDQGFLGCVRIRANAVLPLKDT---GYQRLDLRKLKKSDNLSVRGKIVVSLS  123 (123)
T ss_pred             CCCceEeEEEEEHHHccccCCC---ccceeEeecCCCCCCceEeeEEEEEeC
Confidence            2 58999999999999765322   2347777543    4667899988763

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.81  E-value=8.9e-19  Score=138.92  Aligned_cols=118  Identities=21%  Similarity=0.410  Sum_probs=96.7

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCcEEEEEECC-CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810            7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDP-NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED   85 (277)
Q Consensus         7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~-~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~   85 (277)
                      |.|+|++|++|..  .. +.+||||++.++. ..+.+|++ +.++.||+|||+|.|.+..   ....|.|+|||++. .+
T Consensus         1 l~v~v~~A~~L~~--~~-g~~dpyv~v~~~~~~~~~kT~v-~~~t~nP~Wne~f~f~~~~---~~~~l~~~v~d~~~-~~   72 (126)
T cd08678           1 LLVKNIKANGLSE--AA-GSSNPYCVLEMDEPPQKYQSST-QKNTSNPFWDEHFLFELSP---NSKELLFEVYDNGK-KS   72 (126)
T ss_pred             CEEEEEEecCCCC--CC-CCcCCEEEEEECCCCcEEEeEE-EecCCCCccCceEEEEeCC---CCCEEEEEEEECCC-CC
Confidence            6799999999986  33 8999999999953 35679999 7788999999999999964   35679999999986 36


Q ss_pred             CCceeEEEEEecceeccccCCCceeeEEEEeecC---CCCCceEEEEEEEEEec
Q 023810           86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP---SGRPHGKVDVKVAVRES  136 (277)
Q Consensus        86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~---sg~~~G~L~l~v~~~~~  136 (277)
                      +++|||++.|+|.++.....    ...|+.|...   ....+|+|.|++.|.+.
T Consensus        73 ~~~~lG~~~i~l~~l~~~~~----~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~  122 (126)
T cd08678          73 DSKFLGLAIVPFDELRKNPS----GRQIFPLQGRPYEGDSVSGSITVEFLFMEP  122 (126)
T ss_pred             CCceEEEEEEeHHHhccCCc----eeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence            78999999999999886532    2456777543   35679999999999875

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.81  E-value=1.1e-18  Score=140.48  Aligned_cols=120  Identities=22%  Similarity=0.363  Sum_probs=97.4

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      ..|+|+|++|++|...+.. +.+||||++.+. +.+.+|++ +.++.||.|||+|.|.+..  .....|.|+|||++. .
T Consensus        15 G~L~V~Vi~A~~L~~~d~~-g~~DPYv~v~~~-~~~~kT~v-i~~t~nP~Wne~f~f~v~~--~~~~~l~i~V~D~d~-~   88 (136)
T cd08375          15 GRLMVVIVEGRDLKPCNSN-GKSDPYCEVSMG-SQEHKTKV-VSDTLNPKWNSSMQFFVKD--LEQDVLCITVFDRDF-F   88 (136)
T ss_pred             EEEEEEEEEeeCCCCCCCC-CCcCcEEEEEEC-CEeeeccc-cCCCCCCccCceEEEEecC--ccCCEEEEEEEECCC-C
Confidence            6899999999999988755 899999999994 67789999 7889999999999999965  345689999999986 4


Q ss_pred             CCCceeEEEEEecceeccccCCC-ceeeEEEEeecCCCCCceEEEEEEEE
Q 023810           85 DTKKLIGSAKLKLKDVINDVGLG-ERASLTLKLKRPSGRPHGKVDVKVAV  133 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~~~~~~-~~~~~~~~L~~~sg~~~G~L~l~v~~  133 (277)
                      ..+++||++.|+|.++....... .....++.|   ++..+|+|.|+++|
T Consensus        89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~~~~g~i~l~~~~  135 (136)
T cd08375          89 SPDDFLGRTEIRVADILKETKESKGPITKRLLL---HEVPTGEVVVKLDL  135 (136)
T ss_pred             CCCCeeEEEEEEHHHhccccccCCCcEEEEecc---ccccceeEEEEEEe
Confidence            67899999999999988632211 112344554   46678999999987

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.80  E-value=1.5e-18  Score=137.66  Aligned_cols=117  Identities=20%  Similarity=0.295  Sum_probs=95.6

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      .+|+|+|++|++|...+.. +.+||||+++++ ..+.+|++ ++++.||+|||+|.|.+..   ....|.|+|||++.. 
T Consensus         3 ~~~~V~v~~A~~L~~~d~~-g~~dPyv~v~~~-~~~~kT~v-~~~t~nP~Wne~f~f~~~~---~~~~l~i~V~d~~~~-   75 (126)
T cd04046           3 VVTQVHVHSAEGLSKQDSG-GGADPYVIIKCE-GESVRSPV-QKDTLSPEFDTQAIFYRKK---PRSPIKIQVWNSNLL-   75 (126)
T ss_pred             EEEEEEEEeCcCCCCCCCC-CCcCccEEEEEC-CEEEEeCc-cCCCCCCcccceEEEEecC---CCCEEEEEEEECCCC-
Confidence            4899999999999988765 899999999995 56789999 7889999999999998865   356899999998863 


Q ss_pred             CCCceeEEEEEecceeccccCCCceeeEEEEe----ecCCCCCceEEEEEEEEEe
Q 023810           85 DTKKLIGSAKLKLKDVINDVGLGERASLTLKL----KRPSGRPHGKVDVKVAVRE  135 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L----~~~sg~~~G~L~l~v~~~~  135 (277)
                       .++|||.+++++.++...      ...++.|    .+.+++..|+|.|++++.+
T Consensus        76 -~d~~lG~~~~~l~~~~~~------~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~  123 (126)
T cd04046          76 -CDEFLGQATLSADPNDSQ------TLRTLPLRKRGRDAAGEVPGTISVKVTSSD  123 (126)
T ss_pred             -CCCceEEEEEecccCCCc------CceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence             589999999999875322      1234444    2367889999999998864

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.80  E-value=4e-19  Score=138.56  Aligned_cols=94  Identities=26%  Similarity=0.331  Sum_probs=81.5

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC---CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP---NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~---~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ...|+|+|++|++|+ .  . +.+||||++++.+   ..+.+|+| .++++||+|||+|.|.|..+++.+..|.|+|||.
T Consensus        13 ~~~L~V~vikA~~L~-~--~-g~sDPYVKv~L~~~~k~~k~kT~v-~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~   87 (118)
T cd08677          13 KAELHVNILEAENIS-V--D-AGCECYISGCVSVSEGQKEAQTAL-KKLALHTQWEEELVFPLPEEESLDGTLTLTLRCC   87 (118)
T ss_pred             CCEEEEEEEEecCCC-C--C-CCCCeEEEEEEcCCcCccEEEcce-ecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeC
Confidence            358999999999998 2  2 6789999999942   25779999 7889999999999999988778888999999999


Q ss_pred             cCCCCCCceeEEEEEecceeccc
Q 023810           81 GNEEDTKKLIGSAKLKLKDVIND  103 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~  103 (277)
                      ++ ++++++||++.+++.++...
T Consensus        88 Dr-fs~~d~IG~v~l~l~~~~~~  109 (118)
T cd08677          88 DR-FSRHSTLGELRLKLADVSMM  109 (118)
T ss_pred             CC-CCCCceEEEEEEccccccCC
Confidence            97 58999999999999987444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.80  E-value=1.6e-18  Score=136.66  Aligned_cols=119  Identities=19%  Similarity=0.326  Sum_probs=96.3

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED   85 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~   85 (277)
                      .|.|+|++|++|...+.. +.+||||++.++.....+|++ +.++.||.|||+|.|.+..   ....|.|+|||.+. .+
T Consensus         1 ~l~v~vi~a~~L~~~d~~-g~~DPYv~v~~~~~~~~kT~v-~~~t~nP~Wne~f~~~~~~---~~~~l~v~v~d~~~-~~   74 (121)
T cd04054           1 SLYIRIVEGKNLPAKDIT-GSSDPYCIVKVDNEVIIRTAT-VWKTLNPFWGEEYTVHLPP---GFHTVSFYVLDEDT-LS   74 (121)
T ss_pred             CEEEEEEEeeCCcCCCCC-CCCCceEEEEECCEeeeeeee-EcCCCCCcccceEEEeeCC---CCCEEEEEEEECCC-CC
Confidence            389999999999988865 899999999996444569999 7789999999999999865   24689999999986 46


Q ss_pred             CCceeEEEEEecceeccccCCCceeeEEEEeec--CCCCCceEEEEEEEE
Q 023810           86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLKR--PSGRPHGKVDVKVAV  133 (277)
Q Consensus        86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~--~sg~~~G~L~l~v~~  133 (277)
                      ++++||++.+.+.++....   .....|+.|+.  +.++..|+|.|.+++
T Consensus        75 ~d~~iG~~~~~~~~~~~~~---~~~~~W~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd04054          75 RDDVIGKVSLTREVISAHP---RGIDGWMNLTEVDPDEEVQGEIHLELSV  121 (121)
T ss_pred             CCCEEEEEEEcHHHhccCC---CCCCcEEECeeeCCCCccccEEEEEEEC
Confidence            8899999999998876432   12356788853  456678999998863

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.80  E-value=3e-18  Score=136.00  Aligned_cols=119  Identities=18%  Similarity=0.269  Sum_probs=95.0

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE   83 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~   83 (277)
                      .+.|+|+|++|++|+..    +.+||||++.++...+.+|++ . ++.||.|||+|.|.+....  ...|+|.|||.+. 
T Consensus         3 ~~~L~V~Vi~A~~L~~~----~~~DPYv~v~l~~~~~~kT~v-~-~~~nP~WnE~f~f~~~~~~--~~~l~v~v~d~~~-   73 (126)
T cd08400           3 VRSLQLNVLEAHKLPVK----HVPHPYCVISLNEVKVARTKV-R-EGPNPVWSEEFVFDDLPPD--VNSFTISLSNKAK-   73 (126)
T ss_pred             eeEEEEEEEEeeCCCCC----CCCCeeEEEEECCEeEEEeec-C-CCCCCccCCEEEEecCCCC--cCEEEEEEEECCC-
Confidence            35899999999999863    467999999996445578887 4 4799999999999875422  2468999999886 


Q ss_pred             CCCCceeEEEEEecceeccccCCCceeeEEEEeecCC---CCCceEEEEEEEEEe
Q 023810           84 EDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPS---GRPHGKVDVKVAVRE  135 (277)
Q Consensus        84 ~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~s---g~~~G~L~l~v~~~~  135 (277)
                      ..++++||++.|+|.++....    ....||.|...+   .+..|+|+|+++|.+
T Consensus        74 ~~~d~~iG~v~i~l~~l~~~~----~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          74 RSKDSEIAEVTVQLSKLQNGQ----ETDEWYPLSSASPLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             CCCCCeEEEEEEEHhHccCCC----cccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence            478999999999999887642    346788886543   456799999999976

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.79  E-value=1.5e-18  Score=136.45  Aligned_cols=105  Identities=26%  Similarity=0.324  Sum_probs=85.5

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC----C--CCeEEeeecCCCCCCCccceeEEEecCCC-CCCCceEEEEEE
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVD----P--NKKCSTKVDDEGDTCPYWDETLAIPLPGP-VDDDTTLIIDVV   78 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld----~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~-~l~~~~L~v~V~   78 (277)
                      .|+|+|++|++|+..+ . +.+||||++++-    +  .++.+|++ ++++.||+|||+|.|.|... .+....|.|+||
T Consensus         1 kL~V~Vi~A~~L~~~d-~-g~~DPYVkV~l~g~~~~~k~~k~kTkv-~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~   77 (120)
T cd08395           1 KVTVKVVAANDLKWQT-T-GMFRPFVEVNLIGPHLSDKKRKFATKS-KNNNWSPKYNETFQFILGNEDDPESYELHICVK   77 (120)
T ss_pred             CEEEEEEECcCCCccc-C-CCCCCEEEEEEecCCCcccccEeeeEE-ecCCCCCccCcEEEEEeeCcCCCceeEEEEEEE
Confidence            4899999999998766 4 899999999982    1  23568999 78899999999999999753 345577999999


Q ss_pred             EccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeec
Q 023810           79 HAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR  118 (277)
Q Consensus        79 d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~  118 (277)
                      |.+. .+.+++||++.|+|+++....    ....|++|.+
T Consensus        78 D~d~-~~~dd~IG~~~l~l~~~~~~~----~~~~w~~L~~  112 (120)
T cd08395          78 DYCF-ARDDRLVGVTVLQLRDIAQAG----SCACWLPLGR  112 (120)
T ss_pred             Eecc-cCCCCEEEEEEEEHHHCcCCC----cEEEEEECcC
Confidence            9884 467899999999999988653    2567888854

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.79  E-value=3.1e-18  Score=141.21  Aligned_cols=120  Identities=23%  Similarity=0.343  Sum_probs=96.4

Q ss_pred             eEEEEEEEEeeCCCCCCC-----------------------------CCCCCCcEEEEEECCCCeEEeeecCCCCCCCcc
Q 023810            5 YEVEVTITSAKDLKNVNW-----------------------------RHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYW   55 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~-----------------------------~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~W   55 (277)
                      .+|+|+|.+|++|.+.+.                             ..+.+||||+++++.....+|++ ++++.||+|
T Consensus         7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v-~~~~~nP~W   85 (158)
T cd04015           7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRV-IENSENPVW   85 (158)
T ss_pred             eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEE-eCCCCCCcc
Confidence            579999999999988652                             23678999999996555579999 778899999


Q ss_pred             ceeEEEecCCCCCCCceEEEEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCC---CceEEEEEEE
Q 023810           56 DETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGR---PHGKVDVKVA  132 (277)
Q Consensus        56 nE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~---~~G~L~l~v~  132 (277)
                      ||+|.|.+..   ....|.|+|||++.+  .+++||++.|+|+++...    .....||+|....++   ..++|+|+++
T Consensus        86 nE~F~~~~~~---~~~~l~~~V~d~d~~--~~~~IG~~~i~l~~l~~g----~~~~~w~~L~~~~~~~~~~~~~l~v~~~  156 (158)
T cd04015          86 NESFHIYCAH---YASHVEFTVKDNDVV--GAQLIGRAYIPVEDLLSG----EPVEGWLPILDSNGKPPKPGAKIRVSLQ  156 (158)
T ss_pred             ceEEEEEccC---CCCEEEEEEEeCCCc--CCcEEEEEEEEhHHccCC----CCcceEEECcCCCCCCCCCCCEEEEEEE
Confidence            9999999865   245799999999863  468999999999998753    335688998765433   4689999999


Q ss_pred             EE
Q 023810          133 VR  134 (277)
Q Consensus       133 ~~  134 (277)
                      |.
T Consensus       157 f~  158 (158)
T cd04015         157 FT  158 (158)
T ss_pred             EC
Confidence            84

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.79  E-value=3.4e-18  Score=133.79  Aligned_cols=115  Identities=19%  Similarity=0.327  Sum_probs=95.7

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED   85 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~   85 (277)
                      .|+|+|++|++|+..+.. +.+||||++.+. ..+.+|++ ++++.||.|||+|.|.+..  + ...|.|+|||++. ..
T Consensus         2 ~l~v~v~~a~~L~~~~~~-~~~dPyv~v~~~-~~~~~T~~-~~~t~nP~W~e~f~~~~~~--~-~~~l~~~v~d~~~-~~   74 (119)
T cd08377           2 FLQVKVIRASGLAAADIG-GKSDPFCVLELV-NARLQTHT-IYKTLNPEWNKIFTFPIKD--I-HDVLEVTVYDEDK-DK   74 (119)
T ss_pred             EEEEEEEeeeCCCCCCCC-CCCCcEEEEEEC-CEeeecce-ecCCcCCccCcEEEEEecC--c-CCEEEEEEEECCC-CC
Confidence            689999999999987754 789999999995 55679998 7789999999999999864  2 4689999999986 46


Q ss_pred             CCceeEEEEEecceeccccCCCceeeEEEEeecC--CCCCceEEEEEEEE
Q 023810           86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP--SGRPHGKVDVKVAV  133 (277)
Q Consensus        86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~--sg~~~G~L~l~v~~  133 (277)
                      .+++||++.++|.++...      ...||.|..+  ..+.+|+|.|++.|
T Consensus        75 ~~~~iG~~~~~l~~~~~~------~~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          75 KPEFLGKVAIPLLSIKNG------ERKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             CCceeeEEEEEHHHCCCC------CceEEECcccCCCCceeeEEEEEEEe
Confidence            789999999999988643      2357888654  45679999999987

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.79  E-value=2.8e-18  Score=134.64  Aligned_cols=114  Identities=17%  Similarity=0.325  Sum_probs=93.7

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCcEEEEEECC--CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDP--NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      |+|+|++|++|+..+.. +.+||||++++..  ..+.+|++ ++++.||+|||+|.|.+...  ....|.|+|||++.. 
T Consensus         2 L~V~vi~a~~L~~~~~~-~~~Dpyv~v~~~~~~~~~~kT~v-v~~t~nP~Wne~f~f~i~~~--~~~~l~v~v~d~d~~-   76 (119)
T cd04036           2 LTVRVLRATNITKGDLL-STPDCYVELWLPTASDEKKRTKT-IKNSINPVWNETFEFRIQSQ--VKNVLELTVMDEDYV-   76 (119)
T ss_pred             eEEEEEEeeCCCccCCC-CCCCcEEEEEEcCCCCccCccce-ecCCCCCccceEEEEEeCcc--cCCEEEEEEEECCCC-
Confidence            78999999999987754 8999999999942  45679998 77899999999999998753  345799999999863 


Q ss_pred             CCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEE
Q 023810           85 DTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAV  133 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~  133 (277)
                       .+++||++.++|.++..+    .....|++|...   .+|+|+|.+.+
T Consensus        77 -~~~~iG~~~~~l~~l~~g----~~~~~~~~L~~~---~~g~l~~~~~~  117 (119)
T cd04036          77 -MDDHLGTVLFDVSKLKLG----EKVRVTFSLNPQ---GKEELEVEFLL  117 (119)
T ss_pred             -CCcccEEEEEEHHHCCCC----CcEEEEEECCCC---CCceEEEEEEe
Confidence             788999999999988653    346788888442   47888888876

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.79  E-value=4.5e-18  Score=132.65  Aligned_cols=115  Identities=22%  Similarity=0.367  Sum_probs=95.6

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED   85 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~   85 (277)
                      +|+|+|++|++|+..+.. +.+||||++++. +.+.+|++ +.++.||.|||+|.|.+...  ....|.|+|||++. .+
T Consensus         1 ~~~V~v~~a~~L~~~~~~-~~~dPyv~v~~~-~~~~kT~v-~~~t~nP~Wne~f~f~~~~~--~~~~l~v~v~d~~~-~~   74 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDN-GLSDPYVKFRLG-NEKYKSKV-CSKTLNPQWLEQFDLHLFDD--QSQILEIEVWDKDT-GK   74 (116)
T ss_pred             CEEEEEEEEECCCCCCCC-CCCCcEEEEEEC-CEeEeccc-ccCCCCCceeEEEEEEecCC--CCCEEEEEEEECCC-CC
Confidence            478999999999988754 789999999994 67789998 78899999999999998752  35789999999986 46


Q ss_pred             CCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEE
Q 023810           86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVR  134 (277)
Q Consensus        86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~  134 (277)
                      .+++||++.++|.++...    .....|++|...    +|+|.+.+.+.
T Consensus        75 ~~~~iG~~~~~l~~l~~~----~~~~~w~~L~~~----~G~~~~~~~~~  115 (116)
T cd08376          75 KDEFIGRCEIDLSALPRE----QTHSLELELEDG----EGSLLLLLTLT  115 (116)
T ss_pred             CCCeEEEEEEeHHHCCCC----CceEEEEEccCC----CcEEEEEEEec
Confidence            889999999999988753    335788998543    59998888764

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.78  E-value=1.3e-18  Score=141.41  Aligned_cols=93  Identities=25%  Similarity=0.408  Sum_probs=84.0

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      ..|+|+|+++.+|..+++. +++||||++.+ ++++++|++ +++++||+|||+|+|.|..   ....|.++|||++. +
T Consensus         6 GLL~v~v~~g~~L~~rD~~-~sSDPyVVl~l-g~q~lkT~~-v~~n~NPeWNe~ltf~v~d---~~~~lkv~VyD~D~-f   78 (168)
T KOG1030|consen    6 GLLRVRVKRGKNLAIRDFL-GSSDPYVVLEL-GNQKLKTRV-VYKNLNPEWNEELTFTVKD---PNTPLKVTVYDKDT-F   78 (168)
T ss_pred             eEEEEEEEeecCeeeeccc-cCCCCeEEEEE-CCeeeeeee-ecCCCCCcccceEEEEecC---CCceEEEEEEeCCC-C
Confidence            5799999999999998864 89999999999 589999998 8999999999999999987   25689999999997 5


Q ss_pred             CCCceeEEEEEecceecccc
Q 023810           85 DTKKLIGSAKLKLKDVINDV  104 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~~~  104 (277)
                      ++++|||.+.|+|..+++..
T Consensus        79 s~dD~mG~A~I~l~p~~~~~   98 (168)
T KOG1030|consen   79 SSDDFMGEATIPLKPLLEAQ   98 (168)
T ss_pred             CcccccceeeeccHHHHHHh
Confidence            89999999999999988763

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.78  E-value=5.6e-18  Score=133.60  Aligned_cols=117  Identities=18%  Similarity=0.322  Sum_probs=94.9

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED   85 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~   85 (277)
                      .|+|+|++|++|...+.. +.+||||++.+. ..+.+|++ +.++.||+|||+|.|.+...  ....|.|+|||++. .+
T Consensus         1 ~L~v~vi~a~~L~~~d~~-~~~DPyv~v~~~-~~~~kT~v-~~~t~nP~Wne~f~f~~~~~--~~~~l~~~v~d~~~-~~   74 (123)
T cd04025           1 RLRCHVLEARDLAPKDRN-GTSDPFVRVFYN-GQTLETSV-VKKSCYPRWNEVFEFELMEG--ADSPLSVEVWDWDL-VS   74 (123)
T ss_pred             CEEEEEEEeeCCCCCCCC-CCcCceEEEEEC-CEEEecee-ecCCCCCccCcEEEEEcCCC--CCCEEEEEEEECCC-CC
Confidence            389999999999887754 789999999994 56778998 77899999999999999762  35679999999986 46


Q ss_pred             CCceeEEEEEecceeccccCCCceeeEEEEeec------CCCCCceEEEEEEE
Q 023810           86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLKR------PSGRPHGKVDVKVA  132 (277)
Q Consensus        86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~------~sg~~~G~L~l~v~  132 (277)
                      .++|||.+.++|.++.....    ...||.|..      .+++..|.|.|.|+
T Consensus        75 ~~~~iG~~~~~l~~l~~~~~----~~~w~~L~~~~~~~~~~~~~~G~l~~~~~  123 (123)
T cd04025          75 KNDFLGKVVFSIQTLQQAKQ----EEGWFRLLPDPRAEEESGGNLGSLRLKVR  123 (123)
T ss_pred             CCcEeEEEEEEHHHcccCCC----CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence            78999999999999865432    245777753      36677899998873

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.78  E-value=9.3e-18  Score=137.34  Aligned_cols=126  Identities=21%  Similarity=0.323  Sum_probs=100.0

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCCCcEEEEEE----CCCCeEEeeecCCCCCCCccceeEEEecCCC------CCCCceEE
Q 023810            6 EVEVTITSAKDLKNVN-WRHGPNRPYAVLWV----DPNKKCSTKVDDEGDTCPYWDETLAIPLPGP------VDDDTTLI   74 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~-~~~g~~dpYv~v~l----d~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~------~l~~~~L~   74 (277)
                      .++|+|..|++++... ..++..||||++++    +...+.+|++ +++++||+|||+|.|.|...      .+.+..|.
T Consensus         3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v-~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~   81 (155)
T cd08690           3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTST-IKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLK   81 (155)
T ss_pred             ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCc-ccCCCCCcccceEEEEeccccchhhhhccCCcEE
Confidence            5788889998864322 23468999999997    3356789999 88999999999999999653      24466799


Q ss_pred             EEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEec
Q 023810           75 IDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRES  136 (277)
Q Consensus        75 v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~~  136 (277)
                      |+|||.+.++.+|++||++.|+|+.+..+..    ...+++|.+......|+|.|+|+++++
T Consensus        82 ~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~----~~~~~~L~~~~k~~Gg~l~v~ir~r~p  139 (155)
T cd08690          82 FEVYHKGGFLRSDKLLGTAQVKLEPLETKCE----IHESVDLMDGRKATGGKLEVKVRLREP  139 (155)
T ss_pred             EEEEeCCCcccCCCeeEEEEEEcccccccCc----ceEEEEhhhCCCCcCCEEEEEEEecCC
Confidence            9999998754679999999999999876532    345788876566678999999999886

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.77  E-value=3.1e-18  Score=136.39  Aligned_cols=109  Identities=22%  Similarity=0.286  Sum_probs=88.6

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|+|++|++|...+...+..||||++.+.+    ..+.+|++ +.++.||+|||+|.|.|....+.+..|.|.||+.
T Consensus        15 ~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v-~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~   93 (128)
T cd08392          15 SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAV-KKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS   93 (128)
T ss_pred             CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeeccc-ccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence            579999999999987764337899999999943    23679999 7889999999999999977566678999999999


Q ss_pred             cCCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810           81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL  116 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L  116 (277)
                      +. ..++++||++.|+|.++.... ..+....||.|
T Consensus        94 ~~-~~~~~~lG~~~i~L~~~~~~~-~~~~~~~W~~l  127 (128)
T cd08392          94 RT-LKRRVFLGEVLIPLADWDFED-TDSQRFLWYPL  127 (128)
T ss_pred             CC-CcCcceEEEEEEEcCCcccCC-CCccccceEEC
Confidence            86 478899999999999985432 12345678876

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.77  E-value=7.8e-18  Score=133.32  Aligned_cols=120  Identities=20%  Similarity=0.330  Sum_probs=97.2

Q ss_pred             EEEEEEEEeeCCCCCCC--CCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC
Q 023810            6 EVEVTITSAKDLKNVNW--RHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE   83 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~--~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~   83 (277)
                      .|+|+|++|++|...+.  . +.+||||++.++ ..+.+|++ +.++.||.|||+|.|.+..  .....|.|+|||++. 
T Consensus         2 ~l~v~v~~a~~L~~~~~~~~-~~~dPyv~v~~~-~~~~kT~~-~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d~~~-   75 (128)
T cd04024           2 VLRVHVVEAKDLAAKDRSGK-GKSDPYAILSVG-AQRFKTQT-IPNTLNPKWNYWCEFPIFS--AQNQLLKLILWDKDR-   75 (128)
T ss_pred             EEEEEEEEeeCCCcccCCCC-CCcCCeEEEEEC-CEEEecce-ecCCcCCccCCcEEEEecC--CCCCEEEEEEEECCC-
Confidence            68999999999988775  4 789999999994 67789998 7789999999999999975  345789999999986 


Q ss_pred             CCCCceeEEEEEecceeccccCCCceeeEEEEeecC----CCCCceEEEEEEE
Q 023810           84 EDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP----SGRPHGKVDVKVA  132 (277)
Q Consensus        84 ~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~----sg~~~G~L~l~v~  132 (277)
                      ...++|||++.|+|.++..... ......||.|...    .....|+|.|+++
T Consensus        76 ~~~~~~lG~~~i~l~~~~~~~~-~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~  127 (128)
T cd04024          76 FAGKDYLGEFDIALEEVFADGK-TGQSDKWITLKSTRPGKTSVVSGEIHLQFS  127 (128)
T ss_pred             CCCCCcceEEEEEHHHhhcccc-cCccceeEEccCcccCccccccceEEEEEE
Confidence            4678999999999999875321 1224678888543    2347999999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.77  E-value=3e-18  Score=135.35  Aligned_cols=104  Identities=20%  Similarity=0.200  Sum_probs=85.8

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEec-CCCCCCCceEEEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPL-PGPVDDDTTLIIDVVH   79 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v-~~~~l~~~~L~v~V~d   79 (277)
                      ..|+|+|++|++|...+ . +.+||||++++.+    ..+.+|++ ++++.||+|||+|.|.+ ....+.+..|.|+|||
T Consensus        13 ~~L~V~Vi~A~~L~~~~-~-~~~DpyVkv~l~~~~~~~~~~kT~v-~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d   89 (122)
T cd08381          13 GTLFVMVMHAKNLPLLD-G-SDPDPYVKTYLLPDPQKTTKRKTKV-VRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWS   89 (122)
T ss_pred             CEEEEEEEEeeCCCCCC-C-CCCCCEEEEEEeeCCccCCceeCCc-cCCCCCCCcccEEEEecCChHHhCCCEEEEEEEe
Confidence            47999999999999887 4 8999999999942    34679999 78899999999999997 4334567889999999


Q ss_pred             ccCCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810           80 AGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL  116 (277)
Q Consensus        80 ~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L  116 (277)
                      ++. .++++|||++.|+|+++....    ....||.|
T Consensus        90 ~d~-~~~~~~lG~~~i~l~~l~~~~----~~~~W~~L  121 (122)
T cd08381          90 HDS-LVENEFLGGVCIPLKKLDLSQ----ETEKWYPL  121 (122)
T ss_pred             CCC-CcCCcEEEEEEEeccccccCC----CccceEEC
Confidence            986 468999999999999987542    23567765

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.77  E-value=3.5e-18  Score=139.22  Aligned_cols=118  Identities=19%  Similarity=0.279  Sum_probs=90.2

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCccceeEEEecC-------------CCCC
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAIPLP-------------GPVD   68 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----~~~~T~v~~~~~~nP~WnE~f~f~v~-------------~~~l   68 (277)
                      .|.|+|++|++|..   .++.+||||++.+...    .+.+|++ ++++.||+|||+|.|.+.             ...+
T Consensus         1 kL~V~Vi~ArnL~~---~~g~sDPYV~V~l~~~~~k~~~~kT~v-~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~   76 (148)
T cd04010           1 KLSVRVIECSDLAL---KNGTCDPYASVTLIYSNKKQDTKRTKV-KKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDA   76 (148)
T ss_pred             CEEEEEEeCcCCCC---CCCCCCceEEEEEeCCcccCcccCCcc-EeCCCCCccceEEEEEEecccccccccccCCcccc
Confidence            38999999999987   2388999999999432    4678998 788999999999999984             1123


Q ss_pred             CCceEEEEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCC------------CCceEEEEEE
Q 023810           69 DDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSG------------RPHGKVDVKV  131 (277)
Q Consensus        69 ~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg------------~~~G~L~l~v  131 (277)
                      ....|.|+||+++. ..+++|||++.|+|.++....   .....||.|...+.            ...|.|+|+|
T Consensus        77 ~~~~L~i~V~d~~~-~~~ddfLG~v~i~l~~l~~~~---~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (148)
T cd04010          77 EKLELRVDLWHASM-GGGDVFLGEVRIPLRGLDLQA---GSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI  147 (148)
T ss_pred             cEEEEEEEEEcCCC-CCCCceeEEEEEecccccccC---CcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence            34679999999986 468999999999999987651   12357888854321            2357777765

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.77  E-value=3.1e-18  Score=135.59  Aligned_cols=106  Identities=18%  Similarity=0.284  Sum_probs=87.0

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC--C---CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD--P---NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVH   79 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld--~---~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d   79 (277)
                      ..|+|+|++|++|...+. .+.+||||++.+.  .   ..+.+|++ .+++.||+|||+|.|.|..+++.+..|.|+||+
T Consensus        14 ~~L~V~V~~arnL~~~~~-~~~~dpyVKv~Llp~~~~~~~~~kT~v-~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~   91 (124)
T cd08680          14 SSLVISVEQLRNLSALSI-PENSKVYVRVALLPCSSSTSCLFRTKA-LEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS   91 (124)
T ss_pred             CEEEEEEeEecCCccccc-CCCCCeEEEEEEccCCCCCCceEEcCc-cCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence            579999999999988764 3789999999993  2   23689999 677999999999999998877888999999999


Q ss_pred             ccCCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810           80 AGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL  116 (277)
Q Consensus        80 ~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L  116 (277)
                      .+. .+++++||.+.|+|.++....   +....||.|
T Consensus        92 ~~~-~~~~~~lG~~~i~L~~~~~~~---~~~~~Wy~l  124 (124)
T cd08680          92 VGP-DQQEECLGGAQISLADFESSE---EMSTKWYNL  124 (124)
T ss_pred             CCC-CCceeEEEEEEEEhhhccCCC---ccccccccC
Confidence            986 478999999999999985432   223556654

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.77  E-value=1.8e-17  Score=132.45  Aligned_cols=117  Identities=22%  Similarity=0.433  Sum_probs=94.9

Q ss_pred             EEEEEEEEeeCCCCCCCC---------CCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEE
Q 023810            6 EVEVTITSAKDLKNVNWR---------HGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIID   76 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~---------~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~   76 (277)
                      .|+|+|++|++|...+..         .+.+||||+++++.....+|++ +.++.||.|||+|.|.+..    .+.|.|+
T Consensus         5 ~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~-~~~t~~P~Wne~f~~~v~~----~~~l~~~   79 (132)
T cd04014           5 TLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTST-KPKTNSPVWNEEFTTEVHN----GRNLELT   79 (132)
T ss_pred             EEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeE-cCCCCCCCcceeEEEEcCC----CCEEEEE
Confidence            799999999999877641         2578999999997545568998 7789999999999999963    5789999


Q ss_pred             EEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEe
Q 023810           77 VVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRE  135 (277)
Q Consensus        77 V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~  135 (277)
                      ||+++. ...+++||++.|+|+++....  +.....|+.|.     .+|+|+|++++..
T Consensus        80 v~d~~~-~~~~~~iG~~~i~l~~l~~~~--~~~~~~w~~L~-----~~G~l~l~~~~~~  130 (132)
T cd04014          80 VFHDAA-IGPDDFVANCTISFEDLIQRG--SGSFDLWVDLE-----PQGKLHVKIELKG  130 (132)
T ss_pred             EEeCCC-CCCCceEEEEEEEhHHhcccC--CCcccEEEEcc-----CCcEEEEEEEEec
Confidence            999875 367899999999999988741  22246788884     4799999998864

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.76  E-value=2.3e-17  Score=130.91  Aligned_cols=116  Identities=28%  Similarity=0.426  Sum_probs=95.6

Q ss_pred             EEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCCCcee
Q 023810           11 ITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLI   90 (277)
Q Consensus        11 v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~d~~i   90 (277)
                      |++|++|..  .. +++||||++++. ..+.+|++ ++++.||+|||+|.|.+.........|.|+||+++. ...+++|
T Consensus         2 vi~a~~L~~--~~-g~~Dpyv~v~~~-~~~~kT~v-~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~-~~~d~~i   75 (127)
T cd08373           2 VVSLKNLPG--LK-GKGDRIAKVTFR-GVKKKTRV-LENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK-VGRNRLI   75 (127)
T ss_pred             eEEeeCCcc--cC-CCCCCEEEEEEC-CEeeecce-eCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC-CCCCceE
Confidence            689999987  33 899999999994 56789999 778899999999999996532346789999999986 4678999


Q ss_pred             EEEEEecceeccccCCCceeeEEEEeecCCCC-CceEEEEEEEEEec
Q 023810           91 GSAKLKLKDVINDVGLGERASLTLKLKRPSGR-PHGKVDVKVAVRES  136 (277)
Q Consensus        91 G~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~-~~G~L~l~v~~~~~  136 (277)
                      |++.++|+++...    .....|++|.+++++ .+|+|.++++|.+.
T Consensus        76 G~~~~~l~~l~~~----~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~  118 (127)
T cd08373          76 GSATVSLQDLVSE----GLLEVTEPLLDSNGRPTGATISLEVSYQPP  118 (127)
T ss_pred             EEEEEEhhHcccC----CceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence            9999999998864    235678888765554 58999999999876

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.76  E-value=1.4e-17  Score=132.62  Aligned_cols=108  Identities=20%  Similarity=0.237  Sum_probs=85.9

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC--CCCeEEeeecCCCCCCCccceeEEE-ecCCCCCCCceEEEEEEEcc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD--PNKKCSTKVDDEGDTCPYWDETLAI-PLPGPVDDDTTLIIDVVHAG   81 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld--~~~~~~T~v~~~~~~nP~WnE~f~f-~v~~~~l~~~~L~v~V~d~~   81 (277)
                      ..|+|+|++|++|+..+...+.+||||++.+.  ...+.+|++ ++++.||+|||+|.| .++...+.+..|.|+||+++
T Consensus        16 ~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v-~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d   94 (128)
T cd08388          16 KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRV-LRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD   94 (128)
T ss_pred             CEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccE-EcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence            58999999999999876433789999999983  345679999 788999999999999 46544455668999999998


Q ss_pred             CCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810           82 NEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL  116 (277)
Q Consensus        82 ~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L  116 (277)
                      . .+++++||++.|+|+++....  ++...+|+.|
T Consensus        95 ~-~~~d~~lG~~~i~L~~l~~~~--~~~~~~~~~~  126 (128)
T cd08388          95 R-YSRDDVIGEVVCPLAGADLLN--EGELLVSREI  126 (128)
T ss_pred             C-CCCCceeEEEEEeccccCCCC--CceEEEEEec
Confidence            6 478999999999999986542  2335667765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.76  E-value=1.9e-17  Score=134.37  Aligned_cols=106  Identities=22%  Similarity=0.219  Sum_probs=85.4

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC--C--CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEE-
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP--N--KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVH-   79 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~--~--~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d-   79 (277)
                      ..|+|+|++|++|...+...+.+||||++++.+  .  .+.+|++ +++++||+|||+|.|.+.   +.+..|.|+||+ 
T Consensus        29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v-~kktlnPvfNE~F~f~v~---l~~~~L~v~V~~d  104 (146)
T cd04028          29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKI-ARKTLDPLYQQQLVFDVS---PTGKTLQVIVWGD  104 (146)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceecee-cCCCCCCccCCeEEEEEc---CCCCEEEEEEEeC
Confidence            479999999999987542337899999999932  2  3779999 789999999999999997   357789999995 


Q ss_pred             ccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecC
Q 023810           80 AGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP  119 (277)
Q Consensus        80 ~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~  119 (277)
                      .+. ..+++|||++.|+|+++...    .....||.|...
T Consensus       105 ~~~-~~~~~~iG~~~i~L~~l~~~----~~~~~Wy~L~~~  139 (146)
T cd04028         105 YGR-MDKKVFMGVAQILLDDLDLS----NLVIGWYKLFPT  139 (146)
T ss_pred             CCC-CCCCceEEEEEEEcccccCC----CCceeEEecCCc
Confidence            554 56889999999999997543    224678998654

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.75  E-value=4.8e-17  Score=130.55  Aligned_cols=126  Identities=16%  Similarity=0.209  Sum_probs=96.7

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCC-----CC--CCceEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP-----VD--DDTTLIIDV   77 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~-----~l--~~~~L~v~V   77 (277)
                      +.|+|+|++|++|...+.. +.+||||++.+. ..+.+|++ ++++.||.|||+|.|.+...     .+  ....|.|+|
T Consensus         1 ~~l~v~V~~a~~L~~~d~~-g~~dpyv~v~~~-~~~~kT~v-~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V   77 (135)
T cd04017           1 FQLRAYIYQARDLLAADKS-GLSDPFARVSFL-NQSQETEV-IKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVEL   77 (135)
T ss_pred             CEEEEEEEEeecCcCCCCC-CCCCCEEEEEEC-CeeeEeee-EcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEE
Confidence            3689999999999887754 899999999995 67789999 78899999999999975320     01  124699999


Q ss_pred             EEccCCCCCCceeEEEEE-ecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEec
Q 023810           78 VHAGNEEDTKKLIGSAKL-KLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRES  136 (277)
Q Consensus        78 ~d~~~~~~~d~~iG~~~v-~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~~  136 (277)
                      ||++. .++++|||++.+ ++..+... ........|+.|. +.+..+|+|.|++++.+.
T Consensus        78 ~d~d~-~~~d~~iG~~~i~~~~~~~~~-~~~~~~~~W~~L~-~~~~~~Geil~~~~~~~~  134 (135)
T cd04017          78 FDQDS-VGKDEFLGRSVAKPLVKLDLE-EDFPPKLQWFPIY-KGGQSAGELLAAFELIEV  134 (135)
T ss_pred             EeCcC-CCCCccceEEEeeeeeecccC-CCCCCCceEEEee-cCCCchhheeEEeEEEEe
Confidence            99986 467899999987 44443332 1233456889985 455679999999999864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.75  E-value=5.3e-17  Score=128.67  Aligned_cols=118  Identities=26%  Similarity=0.375  Sum_probs=93.7

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED   85 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~   85 (277)
                      .|+|+|++|+ |...+.. +.+||||+++++...+.+|++ ++++.||+|||+|.|.+..    ...|.|+|||.+. ..
T Consensus         3 ~L~V~i~~a~-l~~~~~~-~~~dPyv~v~~~~~~~~kT~v-~~~t~~P~Wne~f~~~~~~----~~~l~~~V~d~~~-~~   74 (125)
T cd04021           3 QLQITVESAK-LKSNSKS-FKPDPYVEVTVDGQPPKKTEV-SKKTSNPKWNEHFTVLVTP----QSTLEFKVWSHHT-LK   74 (125)
T ss_pred             eEEEEEEeeE-CCCCCcC-CCCCeEEEEEECCcccEEeee-eCCCCCCccccEEEEEeCC----CCEEEEEEEeCCC-CC
Confidence            6899999999 4444433 789999999996444789998 7789999999999999864    4689999999986 46


Q ss_pred             CCceeEEEEEecceeccccCCC-ceeeEEEEeecCC---CCCceEEEEEE
Q 023810           86 TKKLIGSAKLKLKDVINDVGLG-ERASLTLKLKRPS---GRPHGKVDVKV  131 (277)
Q Consensus        86 ~d~~iG~~~v~L~~l~~~~~~~-~~~~~~~~L~~~s---g~~~G~L~l~v  131 (277)
                      .+++||++.++|.++....... +....|++|.+++   +...|+|.+.+
T Consensus        75 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          75 ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence            8899999999999988653311 2235688887654   47799999875

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.75  E-value=5.5e-17  Score=130.51  Aligned_cols=118  Identities=17%  Similarity=0.332  Sum_probs=93.6

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC------------CeEEeeecCCCCCCCcc-ceeEEEecCCCCCCCce
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN------------KKCSTKVDDEGDTCPYW-DETLAIPLPGPVDDDTT   72 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~------------~~~~T~v~~~~~~nP~W-nE~f~f~v~~~~l~~~~   72 (277)
                      +..|++++|++|+ .+++ +++||||++.+.+.            .+.+|++ ++++.||+| ||+|.|.+..    ...
T Consensus         2 ~~~~~~~~A~~L~-~~~f-g~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v-~~~tlnP~W~nE~f~f~v~~----~~~   74 (137)
T cd08691           2 SFSLSGLQARNLK-KGMF-FNPDPYVKISIQPGKRHIFPALPHHGQECRTSI-VENTINPVWHREQFVFVGLP----TDV   74 (137)
T ss_pred             EEEEEEEEeCCCC-CccC-CCCCceEEEEEECCCcccccccccccceeeeee-EcCCCCCceEceEEEEEcCC----CCE
Confidence            5789999999998 6666 89999999999432            2679999 788999999 9999999964    357


Q ss_pred             EEEEEEEccCCCC--CCceeEEEEEecceeccccCCCceeeEEEEeecC--CCCCceEEEEEE
Q 023810           73 LIIDVVHAGNEED--TKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP--SGRPHGKVDVKV  131 (277)
Q Consensus        73 L~v~V~d~~~~~~--~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~--sg~~~G~L~l~v  131 (277)
                      |.|+|||+.....  .+++||++.|+|.+|+..... .....+++|.+.  .++.+|+|.+++
T Consensus        75 L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~-~~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          75 LEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAI-GDQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EEEEEEecCCCCCccCCceEEEEEEEHHHhcccccC-CceEEEEECCcCCCCCcEEEEEEEEe
Confidence            9999999753211  268999999999999876432 235778888653  567889999876

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.75  E-value=7.5e-17  Score=127.57  Aligned_cols=121  Identities=21%  Similarity=0.284  Sum_probs=95.8

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC--CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN--KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN   82 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~--~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~   82 (277)
                      +.|+|+|++|++|+..+.. +.+||||++.+...  ...+|++ +.++.||.|||+|.|.+...  ....|.|+||+++.
T Consensus         1 ~~~~V~v~~a~~L~~~~~~-~~~Dpyv~v~~~~~~~~~~kT~~-~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d~   76 (126)
T cd04043           1 HLFTIRIVRAENLKADSSN-GLSDPYVTLVDTNGKRRIAKTRT-IYDTLNPRWDEEFELEVPAG--EPLWISATVWDRSF   76 (126)
T ss_pred             CEEEEEEEEeECCCCCCCC-CCCCceEEEEECCCCeeeecccE-ecCCCCCcccceEEEEcCCC--CCCEEEEEEEECCC
Confidence            3689999999999988754 89999999998533  3569998 67899999999999999762  35689999999986


Q ss_pred             CCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEec
Q 023810           83 EEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRES  136 (277)
Q Consensus        83 ~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~~  136 (277)
                       ...+++||++.|+|.++..... +.....|+.|..     +|+|.|.+++...
T Consensus        77 -~~~~~~iG~~~i~l~~~~~~~~-~~~~~~w~~l~~-----~g~i~l~~~~~~~  123 (126)
T cd04043          77 -VGKHDLCGRASLKLDPKRFGDD-GLPREIWLDLDT-----QGRLLLRVSMEGE  123 (126)
T ss_pred             -CCCCceEEEEEEecCHHHcCCC-CCCceEEEEcCC-----CCeEEEEEEEeee
Confidence             3588999999999987644321 233567888843     6899998888643

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.75  E-value=1.4e-17  Score=128.95  Aligned_cols=108  Identities=16%  Similarity=0.210  Sum_probs=87.9

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCcc-ceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810            7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYW-DETLAIPLPGPVDDDTTLIIDVVHAGNEED   85 (277)
Q Consensus         7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~W-nE~f~f~v~~~~l~~~~L~v~V~d~~~~~~   85 (277)
                      |+|+|++|++|+..+...+.+||||++.+. ..+.+|++ +.++.||.| ||+|.|.+....+.+..|.|+|||++. .+
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~-~~~~kT~v-~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~-~~   77 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG-STTYKTDV-VKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT-YS   77 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEEC-CeeEecce-ecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC-CC
Confidence            689999999998766434789999999995 57889999 778999999 999999997644455789999999986 46


Q ss_pred             CCceeEEEEEecceeccccCCCceeeEEEEeec
Q 023810           86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLKR  118 (277)
Q Consensus        86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~  118 (277)
                      ++++||++.++|.++..... ......||.|.+
T Consensus        78 ~~~~iG~~~~~l~~l~~~~~-~~~~~~w~~l~~  109 (110)
T cd08688          78 ANDAIGKVYIDLNPLLLKDS-VSQISGWFPIYD  109 (110)
T ss_pred             CCCceEEEEEeHHHhcccCC-ccccCCeEEccc
Confidence            88999999999999987421 223567887743

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.75  E-value=3.5e-17  Score=128.23  Aligned_cols=115  Identities=18%  Similarity=0.307  Sum_probs=93.8

Q ss_pred             EEEEEEEEeeCCCCCCCC-----CCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            6 EVEVTITSAKDLKNVNWR-----HGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~-----~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      +|+|+|++|++|...+..     .+.+||||++.++ ..+.+|++ ++++.||+|||+|.|.+...  ....|.|+|||+
T Consensus         2 ~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~-~~~~kT~~-~~~t~~P~W~e~f~~~v~~~--~~~~l~i~v~d~   77 (121)
T cd08391           2 VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG-AQTFKSKV-IKENLNPKWNEVYEAVVDEV--PGQELEIELFDE   77 (121)
T ss_pred             eEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC-CEeEEccc-cCCCCCCcccceEEEEeCCC--CCCEEEEEEEec
Confidence            689999999999876532     2578999999995 57789998 77899999999999999752  457899999999


Q ss_pred             cCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEE
Q 023810           81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAV  133 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~  133 (277)
                      +. . .+++||.+.|+|.++....    ....||.|...   .+|+|.|++++
T Consensus        78 ~~-~-~~~~iG~~~i~l~~l~~~~----~~~~w~~L~~~---~~G~~~~~~~~  121 (121)
T cd08391          78 DP-D-KDDFLGRLSIDLGSVEKKG----FIDEWLPLEDV---KSGRLHLKLEW  121 (121)
T ss_pred             CC-C-CCCcEEEEEEEHHHhcccC----ccceEEECcCC---CCceEEEEEeC
Confidence            86 3 7899999999999987642    24678888542   57999988764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.74  E-value=2.3e-17  Score=130.26  Aligned_cols=106  Identities=20%  Similarity=0.293  Sum_probs=88.4

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN   82 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~   82 (277)
                      ..|.|+|++|++|...+.. +.+||||++.+  +...+.+|++ ++++.||+|||+|.|.+....+....|.|+|||.+.
T Consensus        16 ~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~l~~~~~~~~kT~v-~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~   93 (124)
T cd08387          16 GILNVKLIQARNLQPRDFS-GTADPYCKVRLLPDRSNTKQSKI-HKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ   93 (124)
T ss_pred             CEEEEEEEEeeCCCCCCCC-CCCCCeEEEEEecCCCCcEeCce-EcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC
Confidence            5799999999999987754 88999999999  3355689999 788999999999999997655556789999999986


Q ss_pred             CCCCCceeEEEEEecceeccccCCCceeeEEEEee
Q 023810           83 EEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLK  117 (277)
Q Consensus        83 ~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~  117 (277)
                       ..++++||++.|+|+++....    ....||.|.
T Consensus        94 -~~~~~~iG~~~i~l~~~~~~~----~~~~W~~l~  123 (124)
T cd08387          94 -FSRDECIGVVELPLAEVDLSE----KLDLWRKIQ  123 (124)
T ss_pred             -CCCCceeEEEEEecccccCCC----CcceEEECc
Confidence             468899999999999987553    246788763

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.74  E-value=3.7e-17  Score=127.19  Aligned_cols=114  Identities=26%  Similarity=0.466  Sum_probs=94.5

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCC
Q 023810            7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDT   86 (277)
Q Consensus         7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~   86 (277)
                      |+|+|++|++|...+.. +.+||||++.++.....+|++ +.++.||.|||+|.|.+...  ....|.|+|||.+. ...
T Consensus         1 l~v~vi~a~~L~~~~~~-~~~dpyv~v~~~~~~~~~T~v-~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~-~~~   75 (115)
T cd04040           1 LTVDVISAENLPSADRN-GKSDPFVKFYLNGEKVFKTKT-IKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWDR-GGK   75 (115)
T ss_pred             CEEEEEeeeCCCCCCCC-CCCCCeEEEEECCCcceeece-ecCCCCCcccccEEEEeccC--CCCEEEEEEEeCCC-CCC
Confidence            68999999999987754 789999999997556679999 78899999999999998752  35789999999986 468


Q ss_pred             CceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEE
Q 023810           87 KKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDV  129 (277)
Q Consensus        87 d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l  129 (277)
                      +++||++.++|.++...    .....|+.|....+...|.|.+
T Consensus        76 ~~~iG~~~~~l~~l~~~----~~~~~~~~L~~~g~~~~~~~~~  114 (115)
T cd04040          76 DDLLGSAYIDLSDLEPE----ETTELTLPLDGQGGGKLGAVFL  114 (115)
T ss_pred             CCceEEEEEEHHHcCCC----CcEEEEEECcCCCCccCceEEc
Confidence            89999999999998763    2357788887777777888764

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.74  E-value=2e-17  Score=131.11  Aligned_cols=106  Identities=20%  Similarity=0.284  Sum_probs=86.4

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|.|+|++|++|...+...+.+||||++.+.+    ..+.+|++ ++++.||+|||+|.|.|....+.+..|.|+|||.
T Consensus        15 ~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v-~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~   93 (125)
T cd04029          15 QSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSI-KRNTTNPVYNETLKYSISHSQLETRTLQLSVWHY   93 (125)
T ss_pred             CeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeee-eeCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence            579999999999987654347899999999932    23578998 7889999999999999976556677899999999


Q ss_pred             cCCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810           81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL  116 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L  116 (277)
                      +. .+++++||++.|+|.++.....    ...||+|
T Consensus        94 ~~-~~~~~~lG~~~i~l~~~~~~~~----~~~w~~l  124 (125)
T cd04029          94 DR-FGRNTFLGEVEIPLDSWNFDSQ----HEECLPL  124 (125)
T ss_pred             CC-CCCCcEEEEEEEeCCcccccCC----cccEEEC
Confidence            86 4788999999999999876532    3456665

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.74  E-value=2.6e-17  Score=126.36  Aligned_cols=102  Identities=24%  Similarity=0.330  Sum_probs=85.4

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED   85 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~   85 (277)
                      .|.|+|++|++|+..+.. +.+||||++++. +.+.+|++ +.++.||+|||+|.|.+..  .+...|.|+||+++.   
T Consensus         1 ~L~V~v~~A~~L~~~~~~-~~~dpyv~v~~~-~~~~kT~v-~~~t~nP~Wne~f~f~v~~--~~~~~l~v~v~d~~~---   72 (105)
T cd04050           1 LLFVYLDSAKNLPLAKST-KEPSPYVELTVG-KTTQKSKV-KERTNNPVWEEGFTFLVRN--PENQELEIEVKDDKT---   72 (105)
T ss_pred             CEEEEEeeecCCCCcccC-CCCCcEEEEEEC-CEEEeCcc-ccCCCCCcccceEEEEeCC--CCCCEEEEEEEECCC---
Confidence            389999999999987754 899999999995 57789998 7789999999999999975  235689999999873   


Q ss_pred             CCceeEEEEEecceeccccCCCceeeEEEEeec
Q 023810           86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLKR  118 (277)
Q Consensus        86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~  118 (277)
                       +++||++.|+|.++....  +.....||+|..
T Consensus        73 -~~~iG~~~i~l~~l~~~~--~~~~~~w~~L~~  102 (105)
T cd04050          73 -GKSLGSLTLPLSELLKEP--DLTLDQPFPLDN  102 (105)
T ss_pred             -CCccEEEEEEHHHhhccc--cceeeeeEecCC
Confidence             689999999999998653  344678898843

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.74  E-value=5.4e-17  Score=128.93  Aligned_cols=114  Identities=15%  Similarity=0.364  Sum_probs=91.6

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC--
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE--   83 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~--   83 (277)
                      .|+|+|++|++|...+.. +.+||||++.+. ..+.+|++ +.++.||.|||+|.|.+..   ....|.|+|||.+..  
T Consensus         2 ~L~V~vi~a~~L~~~d~~-g~~DPyv~v~~~-~~~~kT~~-v~~t~~P~Wne~f~f~~~~---~~~~l~i~v~d~d~~~~   75 (127)
T cd04027           2 KISITVVCAQGLIAKDKT-GTSDPYVTVQVG-KTKKRTKT-IPQNLNPVWNEKFHFECHN---SSDRIKVRVWDEDDDIK   75 (127)
T ss_pred             eEEEEEEECcCCcCCCCC-CCcCcEEEEEEC-CEeeecce-ecCCCCCccceEEEEEecC---CCCEEEEEEEECCCCcc
Confidence            689999999999988865 889999999994 56779998 7789999999999999864   245799999998742  


Q ss_pred             --------CCCCceeEEEEEecceeccccCCCceeeEEEEeecC--CCCCceEEEEEE
Q 023810           84 --------EDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP--SGRPHGKVDVKV  131 (277)
Q Consensus        84 --------~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~--sg~~~G~L~l~v  131 (277)
                              ...+++||.+.|+|.++...      ...||.|...  ....+|+|.|++
T Consensus        76 ~~~~~~~~~~~~~~iG~~~i~l~~~~~~------~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          76 SRLKQKFTRESDDFLGQTIIEVRTLSGE------MDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             cccceeccccCCCcceEEEEEhHHccCC------CCeEEECccCCCCCcEeEEEEEEC
Confidence                    13688999999999886422      3478888654  345799999874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.74  E-value=2.6e-17  Score=130.42  Aligned_cols=106  Identities=19%  Similarity=0.233  Sum_probs=86.2

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|+|++|++|...+...+.+||||++.+.+    ..+.+|++ ++++.||+|||+|.|.+....+.+..|.|+|||.
T Consensus        15 ~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v-~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~   93 (125)
T cd08393          15 RELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSV-KKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR   93 (125)
T ss_pred             CEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCcc-CcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence            479999999999998774236899999999932    24579999 7889999999999999976556678899999999


Q ss_pred             cCCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810           81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL  116 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L  116 (277)
                      +. .+++++||++.|+|.++....    ....||.|
T Consensus        94 ~~-~~~~~~iG~~~i~L~~~~~~~----~~~~W~~L  124 (125)
T cd08393          94 DS-LGRNSFLGEVEVDLGSWDWSN----TQPTWYPL  124 (125)
T ss_pred             CC-CCCCcEeEEEEEecCccccCC----CCcceEEC
Confidence            86 478899999999999985442    23456665

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.73  E-value=3.9e-17  Score=129.28  Aligned_cols=107  Identities=23%  Similarity=0.304  Sum_probs=87.3

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEE
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVH   79 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d   79 (277)
                      ...|+|+|++|++|...+.. +..||||++.+.+    ..+.+|++ ++++.||+|||+|.|.+....+....|.|+||+
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~kT~v-~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~   92 (127)
T cd04030          15 RQKLIVTVHKCRNLPPCDSS-DIPDPYVRLYLLPDKSKSTRRKTSV-KKDNLNPVFDETFEFPVSLEELKRRTLDVAVKN   92 (127)
T ss_pred             CCEEEEEEEEEECCCCccCC-CCCCceEEEEEEcCCCCCceEeccc-ccCCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence            35899999999999988754 8999999999832    45689999 788999999999999997654556789999999


Q ss_pred             ccCCC-CCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810           80 AGNEE-DTKKLIGSAKLKLKDVINDVGLGERASLTLKL  116 (277)
Q Consensus        80 ~~~~~-~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L  116 (277)
                      .+.+. +++++||++.|+|.++....    ....||.|
T Consensus        93 ~~~~~~~~~~~iG~~~i~l~~l~~~~----~~~~W~~L  126 (127)
T cd04030          93 SKSFLSREKKLLGQVLIDLSDLDLSK----GFTQWYDL  126 (127)
T ss_pred             CCcccCCCCceEEEEEEecccccccC----CccceEEC
Confidence            88532 57899999999999986542    24567765

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.73  E-value=4.9e-17  Score=128.35  Aligned_cols=105  Identities=26%  Similarity=0.351  Sum_probs=86.2

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC--CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP--NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN   82 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~   82 (277)
                      ..|+|+|++|++|...+.. +.+||||++.+.+  ..+.+|++ ++++.||+|||+|.|.+....+....|.|+|||.+.
T Consensus        16 ~~L~V~v~~a~~L~~~d~~-~~~dpyv~v~l~~~~~~~~kT~v-~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~   93 (124)
T cd08385          16 NQLTVGIIQAADLPAMDMG-GTSDPYVKVYLLPDKKKKFETKV-HRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR   93 (124)
T ss_pred             CEEEEEEEEeeCCCCccCC-CCCCCEEEEEEEcCCCCceeccc-CcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence            4799999999999987754 7899999999843  35679998 788999999999999987544456789999999986


Q ss_pred             CCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810           83 EEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL  116 (277)
Q Consensus        83 ~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L  116 (277)
                       ..++++||++.|+|+++...    .....|+.|
T Consensus        94 -~~~~~~lG~~~i~l~~~~~~----~~~~~W~~l  122 (124)
T cd08385          94 -FSKHDLIGEVRVPLLTVDLG----HVTEEWRDL  122 (124)
T ss_pred             -CCCCceeEEEEEecCcccCC----CCcceEEEc
Confidence             46889999999999998653    224567766

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.73  E-value=4.9e-17  Score=125.71  Aligned_cols=95  Identities=15%  Similarity=0.203  Sum_probs=79.4

Q ss_pred             EEEEEEEEeeCCCCCCCCC---CCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccC
Q 023810            6 EVEVTITSAKDLKNVNWRH---GPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN   82 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~---g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~   82 (277)
                      +|.|+|++|++|+..+...   +.+||||++.+. ..+.+|++ ++++.||+|||+|.|.+.... ....|.|+|||++.
T Consensus         2 ~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~-~~~~kT~v-~~~t~nPvWne~f~f~v~~~~-~~~~L~~~V~D~d~   78 (108)
T cd04039           2 VVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG-RRVFRTSW-RRHTLNPVFNERLAFEVYPHE-KNFDIQFKVLDKDK   78 (108)
T ss_pred             EEEEEEEeeeCCCCccccCCCCCccCceEEEEEC-CEeEeeee-ecCCCCCcccceEEEEEeCcc-CCCEEEEEEEECCC
Confidence            7999999999998765321   258999999994 66789999 788999999999999986532 24579999999986


Q ss_pred             CCCCCceeEEEEEecceecccc
Q 023810           83 EEDTKKLIGSAKLKLKDVINDV  104 (277)
Q Consensus        83 ~~~~d~~iG~~~v~L~~l~~~~  104 (277)
                       .+++++||++.|+|++|..+.
T Consensus        79 -~~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          79 -FSFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             -CCCCcceEEEEEEHHHHHhhC
Confidence             478999999999999998764

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.73  E-value=2.9e-17  Score=129.18  Aligned_cols=104  Identities=18%  Similarity=0.279  Sum_probs=82.8

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|+|++|++|...+ . +.+||||++.+.+    ..+.+|++ +.++.||+|||+|.|.+....+ ...|.|+||+.
T Consensus        12 ~~L~V~Vi~ar~L~~~~-~-g~~dpYVkv~l~p~~~~~~~~kT~v-~~~t~~P~~nE~F~f~v~~~~~-~~~l~v~V~~~   87 (119)
T cd08685          12 RKLTLHVLEAKGLRSTN-S-GTCNSYVKISLSPDKEVRFRQKTST-VPDSANPLFHETFSFDVNERDY-QKRLLVTVWNK   87 (119)
T ss_pred             CEEEEEEEEEECCCCCC-C-CCCCeeEEEEEEeCCCCcceEeCcc-ccCCCCCccccEEEEEcChHHh-CCEEEEEEECC
Confidence            57999999999998876 4 7899999999943    24568998 7789999999999999976444 34688999998


Q ss_pred             cCCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810           81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL  116 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L  116 (277)
                      +....+++|||.+.|+|.++....    ....||.|
T Consensus        88 ~~~~~~~~~lG~~~i~l~~~~~~~----~~~~Wy~l  119 (119)
T cd08685          88 LSKSRDSGLLGCMSFGVKSIVNQK----EISGWYYL  119 (119)
T ss_pred             CCCcCCCEEEEEEEecHHHhccCc----cccceEeC
Confidence            864335789999999999997432    23567654

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.73  E-value=5.7e-17  Score=125.70  Aligned_cols=106  Identities=25%  Similarity=0.323  Sum_probs=86.6

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCC--CCCCceEEEEEEEcc
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP--VDDDTTLIIDVVHAG   81 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~--~l~~~~L~v~V~d~~   81 (277)
                      .+.|+|+|++|++|.     .+.+||||+++++ +.+.+|++ ++++.||.|||+|.|.+...  .+.+..|.|+|||.+
T Consensus         3 ~~~l~V~v~~a~~L~-----~~~~dpyv~v~~~-~~~~kT~~-~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~   75 (111)
T cd04011           3 DFQVRVRVIEARQLV-----GGNIDPVVKVEVG-GQKKYTSV-KKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR   75 (111)
T ss_pred             cEEEEEEEEEcccCC-----CCCCCCEEEEEEC-CEeeeeeE-EeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence            367999999999998     2688999999996 66778998 77889999999999997542  234568999999998


Q ss_pred             CCCCCCceeEEEEEecceeccccCCCceeeEEEEeec
Q 023810           82 NEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR  118 (277)
Q Consensus        82 ~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~  118 (277)
                      .+ .++++||++.|+|+++..... ......|+.|..
T Consensus        76 ~~-~~~~~iG~~~i~l~~v~~~~~-~~~~~~w~~L~~  110 (111)
T cd04011          76 SL-RSDTLIGSFKLDVGTVYDQPD-HAFLRKWLLLTD  110 (111)
T ss_pred             cc-ccCCccEEEEECCccccCCCC-CcceEEEEEeeC
Confidence            64 678999999999999987643 334578888865

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.72  E-value=8.6e-17  Score=127.01  Aligned_cols=105  Identities=26%  Similarity=0.410  Sum_probs=84.2

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCC-CCceEEEEEEEccCCC
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVD-DDTTLIIDVVHAGNEE   84 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l-~~~~L~v~V~d~~~~~   84 (277)
                      .|+|+|++|++|+..+.. +++||||++++. ..+.+|++..+++.||.|||+|.|.+..... ....|.|+|||.+. .
T Consensus         2 ~L~V~V~~A~~L~~~~~~-~~~dpyv~v~~~-~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~-~   78 (124)
T cd04049           2 TLEVLLISAKGLQDTDFL-GKIDPYVIIQCR-TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN-F   78 (124)
T ss_pred             eEEEEEEecCCCCCCCCC-CCcCceEEEEEC-CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc-C
Confidence            689999999999988765 899999999995 5567888844458999999999999976321 24679999999986 4


Q ss_pred             CCCceeEEEEEecceeccccCCCceeeEEEEee
Q 023810           85 DTKKLIGSAKLKLKDVINDVGLGERASLTLKLK  117 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~  117 (277)
                      ..+++||++.|+|.++......    ..|+.|.
T Consensus        79 ~~d~~iG~~~i~l~~l~~~~~~----~~~~~l~  107 (124)
T cd04049          79 SDDDFIGEATIHLKGLFEEGVE----PGTAELV  107 (124)
T ss_pred             CCCCeEEEEEEEhHHhhhCCCC----cCceEee
Confidence            6789999999999999875432    4455553

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.72  E-value=6.6e-17  Score=127.97  Aligned_cols=104  Identities=19%  Similarity=0.275  Sum_probs=85.3

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC--CCCeEEeeecCCCCCCCccceeEEEe-cCCCCCCCceEEEEEEEcc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD--PNKKCSTKVDDEGDTCPYWDETLAIP-LPGPVDDDTTLIIDVVHAG   81 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld--~~~~~~T~v~~~~~~nP~WnE~f~f~-v~~~~l~~~~L~v~V~d~~   81 (277)
                      ..|+|+|++|++|...+. .+..|+||++.+.  ...+.+|++ .++ .||+|||+|.|. ++...+.+..|.|+||+.+
T Consensus        16 ~~L~V~Vi~a~nL~~~~~-~~~~d~yVk~~llp~~~~~~kTkv-~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~   92 (124)
T cd08389          16 RKLTVTVIRAQDIPTKDR-GGASSWQVHLVLLPSKKQRAKTKV-QRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE   92 (124)
T ss_pred             CEEEEEEEEecCCCchhc-CCCCCcEEEEEEccCCcceeeccc-ccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECC
Confidence            479999999999998774 3788999998773  345678888 555 999999999998 7665667789999999998


Q ss_pred             CCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810           82 NEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL  116 (277)
Q Consensus        82 ~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L  116 (277)
                      . .+++++||++.|+|+++...    .....||.|
T Consensus        93 ~-~~~~~~lG~~~i~L~~l~~~----~~~~~w~~L  122 (124)
T cd08389          93 R-MRKERLIGEKVVPLSQLNLE----GETTVWLTL  122 (124)
T ss_pred             C-cccCceEEEEEEeccccCCC----CCceEEEeC
Confidence            6 47899999999999998543    235677776

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.71  E-value=1e-16  Score=126.10  Aligned_cols=106  Identities=23%  Similarity=0.317  Sum_probs=85.4

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|+|++|++|...+...+.+||||++.+.+.    .+.+|++ ++++.||+|||+|.|.+....+....|.|+|||.
T Consensus        14 ~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v-~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~   92 (123)
T cd08521          14 GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSV-KKNTTNPVFNETLKYHISKSQLETRTLQLSVWHH   92 (123)
T ss_pred             CEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccc-cCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeC
Confidence            5799999999999887622378999999998322    4578998 7889999999999999876555567899999999


Q ss_pred             cCCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810           81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL  116 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L  116 (277)
                      +. .+++++||++.|+|.++....    ....||.|
T Consensus        93 ~~-~~~~~~iG~~~i~l~~l~~~~----~~~~w~~l  123 (123)
T cd08521          93 DR-FGRNTFLGEVEIPLDSWDLDS----QQSEWYPL  123 (123)
T ss_pred             CC-CcCCceeeEEEEecccccccC----CCccEEEC
Confidence            86 468899999999999986432    24567765

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.71  E-value=9.5e-17  Score=126.53  Aligned_cols=98  Identities=21%  Similarity=0.245  Sum_probs=79.1

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED   85 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~   85 (277)
                      .|.|+|++|++|...+    ..||||++++. +.+.+|++ .++ .||.|||+|.|.+..  . +..|.|+|||++.  .
T Consensus         3 ~L~V~Vv~Ar~L~~~~----~~dPYV~Ik~g-~~k~kT~v-~~~-~nP~WnE~F~F~~~~--~-~~~L~v~V~dkd~--~   70 (127)
T cd08394           3 LLCVLVKKAKLDGAPD----KFNTYVTLKVQ-NVKSTTIA-VRG-SQPCWEQDFMFEINR--L-DLGLVIELWNKGL--I   70 (127)
T ss_pred             eEEEEEEEeeCCCCCC----CCCCeEEEEEC-CEEeEeeE-CCC-CCCceeeEEEEEEcC--C-CCEEEEEEEeCCC--c
Confidence            6999999999997644    44899999994 77889998 554 599999999999965  2 3459999999884  4


Q ss_pred             CCceeEEEEEecceeccccCCCceeeEEEEee
Q 023810           86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLK  117 (277)
Q Consensus        86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~  117 (277)
                      .|+|||++.|+|.++......  -...||+|.
T Consensus        71 ~DD~lG~v~i~L~~v~~~~~~--~~~~Wy~L~  100 (127)
T cd08394          71 WDTLVGTVWIPLSTIRQSNEE--GPGEWLTLD  100 (127)
T ss_pred             CCCceEEEEEEhHHcccCCCC--CCCccEecC
Confidence            899999999999999876322  125677775

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.70  E-value=1.5e-16  Score=123.33  Aligned_cols=97  Identities=23%  Similarity=0.333  Sum_probs=79.9

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC--CCeEEeeecCCCCCCCccceeEEEecCCCCC-CCceEEEEEEEcc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP--NKKCSTKVDDEGDTCPYWDETLAIPLPGPVD-DDTTLIIDVVHAG   81 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l-~~~~L~v~V~d~~   81 (277)
                      .+|+|+|++|++|...+...+.+||||++++..  +.+.+|++ ++++.||+|||+|.|.+...++ ....|.|+|||.+
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v-~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d   79 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRI-IRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD   79 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeee-ECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence            379999999999988774326899999999843  35679999 7889999999999998865322 2468999999999


Q ss_pred             CCCCCCceeEEEEEecceeccc
Q 023810           82 NEEDTKKLIGSAKLKLKDVIND  103 (277)
Q Consensus        82 ~~~~~d~~iG~~~v~L~~l~~~  103 (277)
                      . .+.++|||++.|+|.+|...
T Consensus        80 ~-~~~dd~lG~~~i~l~~l~~~  100 (111)
T cd04041          80 R-FTADDRLGRVEIDLKELIED  100 (111)
T ss_pred             C-CCCCCcceEEEEEHHHHhcC
Confidence            6 46789999999999999854

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.70  E-value=2.9e-16  Score=122.33  Aligned_cols=114  Identities=23%  Similarity=0.313  Sum_probs=85.1

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCC
Q 023810            7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDT   86 (277)
Q Consensus         7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~   86 (277)
                      |+|+|++|++|+..    +.+||||+++++...+.+|++ +++ .||.|||+|.|.+....+....|.|.||+.+.. ..
T Consensus         2 L~v~vi~a~~l~~~----~~~dpyv~v~~~~~~~~kT~~-~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~-~~   74 (117)
T cd08383           2 LRLRILEAKNLPSK----GTRDPYCTVSLDQVEVARTKT-VEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSK-DR   74 (117)
T ss_pred             eEEEEEEecCCCcC----CCCCceEEEEECCEEeEecce-EEC-CCCcccceEEEecCCccccEEEEEEEEEecccC-CC
Confidence            78999999999864    578999999996545578998 566 999999999999977544456788999988753 44


Q ss_pred             CceeEEEEEecceeccccCCCceeeEEEEeecC--CCCCceEEEEEEEE
Q 023810           87 KKLIGSAKLKLKDVINDVGLGERASLTLKLKRP--SGRPHGKVDVKVAV  133 (277)
Q Consensus        87 d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~--sg~~~G~L~l~v~~  133 (277)
                      +.++|.+.  |..+..    +.....||+|...  ..+..|+|+|+++|
T Consensus        75 ~~~~g~v~--l~~~~~----~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          75 DIVIGKVA--LSKLDL----GQGKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             eeEEEEEE--ecCcCC----CCcceeEEECccCCCCCCcCceEEEEEEC
Confidence            55666654  444433    2234678888543  34568999999986

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.70  E-value=2.2e-16  Score=124.32  Aligned_cols=103  Identities=22%  Similarity=0.345  Sum_probs=86.0

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED   85 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~   85 (277)
                      .|+|+|++|++|+..+.. +.+||||+++++...+.+|++ ++++.||.|||+|.|.+..   ....|.|+|||.+. ..
T Consensus         2 ~L~V~Vi~a~~L~~~d~~-g~~DPYv~v~~~~~~~~kT~~-~~~t~~P~Wne~f~~~v~~---~~~~L~v~v~d~~~-~~   75 (120)
T cd04045           2 VLRLHIRKANDLKNLEGV-GKIDPYVRVLVNGIVKGRTVT-ISNTLNPVWDEVLYVPVTS---PNQKITLEVMDYEK-VG   75 (120)
T ss_pred             eEEEEEEeeECCCCccCC-CCcCCEEEEEECCEEeeceeE-ECCCcCCccCceEEEEecC---CCCEEEEEEEECCC-CC
Confidence            689999999999988765 899999999996456678888 7789999999999999865   24689999999986 46


Q ss_pred             CCceeEEEEEecceeccccCCCceeeEEEEeecC
Q 023810           86 TKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP  119 (277)
Q Consensus        86 ~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~  119 (277)
                      .+++||+++++|.++....     ...||.|.+.
T Consensus        76 ~d~~IG~~~~~l~~l~~~~-----~~~~~~~~~~  104 (120)
T cd04045          76 KDRSLGSVEINVSDLIKKN-----EDGKYVEYDD  104 (120)
T ss_pred             CCCeeeEEEEeHHHhhCCC-----CCceEEecCC
Confidence            8899999999999998762     2456777554

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.69  E-value=2.3e-16  Score=124.49  Aligned_cols=104  Identities=21%  Similarity=0.301  Sum_probs=83.1

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCC-CCCCCceEEEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPG-PVDDDTTLIIDVVH   79 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~-~~l~~~~L~v~V~d   79 (277)
                      ..|+|+|++|++|...+.. +..||||++.+.+    ..+.+|++ ++++.||+|||+|.|.+.. ..+....|.|+|||
T Consensus        16 ~~L~V~vi~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d   93 (125)
T cd04031          16 SQLIVTVLQARDLPPRDDG-SLRNPYVKVYLLPDRSEKSKRRTKT-VKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD   93 (125)
T ss_pred             CEEEEEEEEecCCCCcCCC-CCCCCEEEEEEccCCCccccccccc-cCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence            4799999999999987754 7899999999943    25678998 7889999999999998533 33456789999999


Q ss_pred             ccCCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810           80 AGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL  116 (277)
Q Consensus        80 ~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L  116 (277)
                      .+. ...+++||++.++|++....   +  ...||.|
T Consensus        94 ~~~-~~~~~~iG~~~i~l~~~~~~---~--~~~W~~L  124 (125)
T cd04031          94 YDR-DGENDFLGEVVIDLADALLD---D--EPHWYPL  124 (125)
T ss_pred             CCC-CCCCcEeeEEEEeccccccc---C--CcceEEC
Confidence            986 46789999999999983322   1  2467776

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.69  E-value=3.2e-16  Score=123.78  Aligned_cols=105  Identities=21%  Similarity=0.304  Sum_probs=85.0

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CCCCeEEeeecCCCCCCCccceeEEEecCC-CCCCCceEEEEEEEcc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DPNKKCSTKVDDEGDTCPYWDETLAIPLPG-PVDDDTTLIIDVVHAG   81 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~~~~~~T~v~~~~~~nP~WnE~f~f~v~~-~~l~~~~L~v~V~d~~   81 (277)
                      ..|+|+|++|++|...+.. +..||||++.+  +...+.+|++ ++++.||+|||+|.|.+.. ..+....|.|+|||.+
T Consensus        16 ~~L~v~v~~a~~L~~~d~~-~~~dpyv~v~~~~~~~~~~kT~v-~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d   93 (125)
T cd08386          16 STLTLKILKAVELPAKDFS-GTSDPFVKIYLLPDKKHKLETKV-KRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD   93 (125)
T ss_pred             CEEEEEEEEecCCCCccCC-CCCCceEEEEECCCCCcceeeee-ecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence            5899999999999887754 78999999999  3356689999 7889999999999998532 2345568999999998


Q ss_pred             CCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810           82 NEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL  116 (277)
Q Consensus        82 ~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L  116 (277)
                      . ..+++|||++.|+|+++....    ....|+.|
T Consensus        94 ~-~~~~~~iG~~~i~l~~l~~~~----~~~~W~~l  123 (125)
T cd08386          94 R-FSRNDPIGEVSLPLNKVDLTE----EQTFWKDL  123 (125)
T ss_pred             C-CcCCcEeeEEEEecccccCCC----CcceEEec
Confidence            6 468899999999999987542    24567766

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.69  E-value=2.6e-16  Score=122.13  Aligned_cols=102  Identities=17%  Similarity=0.359  Sum_probs=82.6

Q ss_pred             CCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCCCceeEEEEEecceecc
Q 023810           23 RHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVIN  102 (277)
Q Consensus        23 ~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~  102 (277)
                      .+|.+||||+++++.....+|++ +.++.||+|||+|.|.+.+.  ..+.|.|+|||.+. . .+++||.+.|+|+++..
T Consensus         9 ~~G~~dPYv~v~v~~~~~~kT~v-~~~t~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~-~-~d~~iG~~~v~L~~l~~   83 (111)
T cd04052           9 KTGLLSPYAELYLNGKLVYTTRV-KKKTNNPSWNASTEFLVTDR--RKSRVTVVVKDDRD-R-HDPVLGSVSISLNDLID   83 (111)
T ss_pred             cCCCCCceEEEEECCEEEEEEee-eccCCCCccCCceEEEecCc--CCCEEEEEEEECCC-C-CCCeEEEEEecHHHHHh
Confidence            45889999999996445678998 67799999999999999752  35679999999986 4 78999999999999876


Q ss_pred             ccCCCceeeEEEEeecCCCCCceEEEEEEEEEe
Q 023810          103 DVGLGERASLTLKLKRPSGRPHGKVDVKVAVRE  135 (277)
Q Consensus       103 ~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~  135 (277)
                      ..   .....||.|..   +.+|+|+|+++|.+
T Consensus        84 ~~---~~~~~w~~L~~---~~~G~i~~~~~~~p  110 (111)
T cd04052          84 AT---SVGQQWFPLSG---NGQGRIRISALWKP  110 (111)
T ss_pred             hh---hccceeEECCC---CCCCEEEEEEEEec
Confidence            42   22457888843   56899999999875

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.68  E-value=5.3e-16  Score=122.09  Aligned_cols=106  Identities=18%  Similarity=0.184  Sum_probs=85.5

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC--CCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD--PNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN   82 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld--~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~   82 (277)
                      ..|.|+|++|++|...+...+..||||++.+.  ...+.+|++ ++++.||+|||+|.|.+....+....|.|+|||.+.
T Consensus        14 ~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v-~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~   92 (123)
T cd08390          14 EQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKV-KRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR   92 (123)
T ss_pred             CEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeee-EcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc
Confidence            47999999999999876223789999999983  345578988 788999999999999987644445689999999886


Q ss_pred             CCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810           83 EEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL  116 (277)
Q Consensus        83 ~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L  116 (277)
                       ..++++||++.|+|.++....    ....|++|
T Consensus        93 -~~~~~~iG~~~i~L~~l~~~~----~~~~w~~L  121 (123)
T cd08390          93 -FSRHCIIGHVLFPLKDLDLVK----GGVVWRDL  121 (123)
T ss_pred             -CCCCcEEEEEEEeccceecCC----CceEEEeC
Confidence             467899999999999987653    23567776

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.68  E-value=1.7e-15  Score=119.84  Aligned_cols=117  Identities=20%  Similarity=0.290  Sum_probs=91.6

Q ss_pred             eEEEEEEEEeeCCCCCCC-CCCCCCcEEEEEEC-----CCCeEEeeecCCCC-CCCccceeEEEecCCCCCCCceEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNW-RHGPNRPYAVLWVD-----PNKKCSTKVDDEGD-TCPYWDETLAIPLPGPVDDDTTLIIDV   77 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~-~~g~~dpYv~v~ld-----~~~~~~T~v~~~~~-~nP~WnE~f~f~v~~~~l~~~~L~v~V   77 (277)
                      ..|+|+|++|++|...+. ..+..||||++++.     ...+.+|++ +.++ .||.|||+|.|.+...  +...|.|+|
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~-~~~~~~~P~w~e~f~f~~~~~--~~~~l~~~V   78 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKV-VKNNGFNPVWNETFEFDVTVP--ELAFLRFVV   78 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeee-ecCCCcCCccCCcEEEEEeCC--CeEEEEEEE
Confidence            379999999999987662 23789999999993     235678988 4444 4999999999998642  235799999


Q ss_pred             EEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCC--CceEEEEEEEE
Q 023810           78 VHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGR--PHGKVDVKVAV  133 (277)
Q Consensus        78 ~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~--~~G~L~l~v~~  133 (277)
                      ||++..  ++++||++.++|++|...       ..+++|+++.++  ..|+|.+++++
T Consensus        79 ~d~~~~--~~~~iG~~~~~l~~l~~g-------~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          79 YDEDSG--DDDFLGQACLPLDSLRQG-------YRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             EeCCCC--CCcEeEEEEEEhHHhcCc-------eEEEEecCCCCCCCcceeEEEEEEE
Confidence            999863  889999999999998532       246788776663  57899998886

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.68  E-value=1.7e-15  Score=122.85  Aligned_cols=118  Identities=17%  Similarity=0.291  Sum_probs=92.3

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      ..|.|.|++|++|...      .++||.+.|+.....||++ +.++.||.|+|+|.|.+..   ....|+|.||+.+...
T Consensus        11 ~sL~v~V~EAk~Lp~~------~~~Y~~i~Ld~~~vaRT~v-~~~~~nP~W~E~F~f~~~~---~~~~l~v~v~k~~~~~   80 (146)
T cd04013          11 NSLKLWIIEAKGLPPK------KRYYCELCLDKTLYARTTS-KLKTDTLFWGEHFEFSNLP---PVSVITVNLYRESDKK   80 (146)
T ss_pred             EEEEEEEEEccCCCCc------CCceEEEEECCEEEEEEEE-EcCCCCCcceeeEEecCCC---cccEEEEEEEEccCcc
Confidence            4689999999999753      2799999998666679999 7789999999999998654   2357999998754321


Q ss_pred             ---CCCceeEEEEEecceeccccCCCceeeEEEEeecCCCC----------CceEEEEEEEEEec
Q 023810           85 ---DTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGR----------PHGKVDVKVAVRES  136 (277)
Q Consensus        85 ---~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~----------~~G~L~l~v~~~~~  136 (277)
                         ..+++||.+.|++.+|...    .....||+|...+++          ..++|+|+++|.+.
T Consensus        81 ~~~~~~~~IG~V~Ip~~~l~~~----~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~  141 (146)
T cd04013          81 KKKDKSQLIGTVNIPVTDVSSR----QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST  141 (146)
T ss_pred             ccccCCcEEEEEEEEHHHhcCC----CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence               2568999999999998853    346789999765443          24799999999765

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.66  E-value=8.5e-16  Score=122.98  Aligned_cols=97  Identities=21%  Similarity=0.298  Sum_probs=80.9

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC------CCeEEeeecCCCCCCCccceeEEEecCCC--CCCCceEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP------NKKCSTKVDDEGDTCPYWDETLAIPLPGP--VDDDTTLIID   76 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~------~~~~~T~v~~~~~~nP~WnE~f~f~v~~~--~l~~~~L~v~   76 (277)
                      ..|+|+|++|++|...+.. +.+||||++.+.+      ..+.+|++ +.++.||+|||+|.|.+...  ......|.|+
T Consensus        16 ~~L~V~Vi~A~~L~~~~~~-g~~dPyv~v~l~~~~~~~~~~~~kT~v-~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~   93 (133)
T cd04009          16 QSLRVEILNARNLLPLDSN-GSSDPFVKVELLPRHLFPDVPTPKTQV-KKKTLFPLFDESFEFNVPPEQCSVEGALLLFT   93 (133)
T ss_pred             CEEEEEEEEeeCCCCcCCC-CCCCCEEEEEEECCCcCcccccccccc-CcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence            4799999999999987754 8899999999842      34679999 78899999999999998652  2235689999


Q ss_pred             EEEccCCCCCCceeEEEEEecceecccc
Q 023810           77 VVHAGNEEDTKKLIGSAKLKLKDVINDV  104 (277)
Q Consensus        77 V~d~~~~~~~d~~iG~~~v~L~~l~~~~  104 (277)
                      |||.+. .++++|||++.|+|++|..-.
T Consensus        94 V~d~d~-~~~d~~iG~~~i~l~~l~~~~  120 (133)
T cd04009          94 VKDYDL-LGSNDFEGEAFLPLNDIPGVE  120 (133)
T ss_pred             EEecCC-CCCCcEeEEEEEeHHHCCccc
Confidence            999986 467899999999999987543

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.66  E-value=5.5e-16  Score=124.66  Aligned_cols=92  Identities=20%  Similarity=0.312  Sum_probs=77.8

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC--C--CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP--N--KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~--~--~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|.|+|++|++|...+.. +.+||||++.+.+  .  .+.+|++ ++++.||+|||+|.|.|....+.+..|.|+||+.
T Consensus        15 ~~L~V~Vi~A~nL~~~~~~-g~~DpyVkv~l~~~~~~~~k~kT~v-~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~   92 (136)
T cd08406          15 ERLTVVVVKARNLVWDNGK-TTADPFVKVYLLQDGRKISKKKTSV-KRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAES   92 (136)
T ss_pred             CEEEEEEEEeeCCCCccCC-CCCCeEEEEEEEeCCccccccCCcc-ccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeC
Confidence            4799999999999987643 8899999999932  2  2568888 7789999999999999987667788999999999


Q ss_pred             cCCCCCCceeEEEEEecce
Q 023810           81 GNEEDTKKLIGSAKLKLKD   99 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~   99 (277)
                      +. .+++++||++.|....
T Consensus        93 d~-~~~~~~iG~v~lg~~~  110 (136)
T cd08406          93 TE-DGKTPNVGHVIIGPAA  110 (136)
T ss_pred             CC-CCCCCeeEEEEECCCC
Confidence            86 4789999999997653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.65  E-value=6.6e-16  Score=124.38  Aligned_cols=93  Identities=18%  Similarity=0.252  Sum_probs=78.1

Q ss_pred             eEEEEEEEEeeCCCCCCCC-CCCCCcEEEEEECC--C--CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWR-HGPNRPYAVLWVDP--N--KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVH   79 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~-~g~~dpYv~v~ld~--~--~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d   79 (277)
                      ..|.|+|++|++|...+.. .+.+||||++++..  +  .+.+|++ ++++.||+|||+|.|.|+...+++..|.|+|||
T Consensus        15 ~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v-~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d   93 (138)
T cd08407          15 NRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKR-AKHKINPVWNEMIMFELPSELLAASSVELEVLN   93 (138)
T ss_pred             CeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccce-eeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence            5799999999999887622 14489999999832  1  3568998 788999999999999998777778889999999


Q ss_pred             ccCCCCCCceeEEEEEecce
Q 023810           80 AGNEEDTKKLIGSAKLKLKD   99 (277)
Q Consensus        80 ~~~~~~~d~~iG~~~v~L~~   99 (277)
                      .+. .+++++||++.+.+..
T Consensus        94 ~d~-~~~~d~iG~v~lg~~~  112 (138)
T cd08407          94 QDS-PGQSLPLGRCSLGLHT  112 (138)
T ss_pred             CCC-CcCcceeceEEecCcC
Confidence            986 5789999999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.65  E-value=3.3e-15  Score=116.35  Aligned_cols=81  Identities=32%  Similarity=0.480  Sum_probs=67.2

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEcc-
Q 023810            7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAG-   81 (277)
Q Consensus         7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~-   81 (277)
                      |+|+|++|++|+      +..||||++.+++.    .+.+|++ +.++.||+|||+|.|.+..    ...|.|.|||++ 
T Consensus         1 L~V~V~~A~~L~------~~sDPYV~l~v~~~~~~~~~~KTk~-i~~TlnPvWnE~F~i~l~~----s~~L~~~v~d~~~   69 (118)
T cd08686           1 LNVIVHSAQGFK------QSANLYCTLEVDSFGYFVKKAKTRV-CRDTTEPNWNEEFEIELEG----SQTLRILCYEKCY   69 (118)
T ss_pred             CEEEEEeCCCCC------CCCCCEEEEEEcCccccceeeeeee-ecCCCCCccceEEEEEeCC----CCEEEEEEEEccc
Confidence            689999999995      45799999999642    4589999 7899999999999999964    468999999973 


Q ss_pred             -----CCCCCCceeEEEEEecc
Q 023810           82 -----NEEDTKKLIGSAKLKLK   98 (277)
Q Consensus        82 -----~~~~~d~~iG~~~v~L~   98 (277)
                           .....+++||++.|.|.
T Consensus        70 ~~~~~d~~~~d~~~G~g~i~Ld   91 (118)
T cd08686          70 SKVKLDGEGTDAIMGKGQIQLD   91 (118)
T ss_pred             ccccccccCcccEEEEEEEEEC
Confidence                 12367899999888874

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.65  E-value=1.8e-15  Score=125.29  Aligned_cols=96  Identities=18%  Similarity=0.211  Sum_probs=79.9

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC----CCCeEEeeecCCCCCCCccceeEEEecC-CCCCCCceEEEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD----PNKKCSTKVDDEGDTCPYWDETLAIPLP-GPVDDDTTLIIDVVH   79 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld----~~~~~~T~v~~~~~~nP~WnE~f~f~v~-~~~l~~~~L~v~V~d   79 (277)
                      ..|.|+|++|++|...+.. +.+||||++.+.    ...+++|++ +.++.||.|||+|.|.+. ...+.+..|.|+|||
T Consensus        27 g~L~V~Vi~A~nL~~~d~~-g~~DPYVkv~l~~~~~~~~~~kT~v-i~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d  104 (162)
T cd04020          27 GELHVWVKEAKNLPALKSG-GTSDSFVKCYLLPDKSKKSKQKTPV-VKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD  104 (162)
T ss_pred             ceEEEEEEeeeCCCCCCCC-CCCCCEEEEEEEcCCCCCcceeCCc-cCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence            5799999999999987754 899999999883    235679999 788999999999999853 323455689999999


Q ss_pred             ccCCCCCCceeEEEEEecceeccc
Q 023810           80 AGNEEDTKKLIGSAKLKLKDVIND  103 (277)
Q Consensus        80 ~~~~~~~d~~iG~~~v~L~~l~~~  103 (277)
                      ++. .++++|||++.|.|.++...
T Consensus       105 ~d~-~~~d~~lG~v~i~l~~~~~~  127 (162)
T cd04020         105 HDK-LSSNDFLGGVRLGLGTGKSY  127 (162)
T ss_pred             CCC-CCCCceEEEEEEeCCccccC
Confidence            986 46799999999999988654

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.64  E-value=7.1e-15  Score=119.41  Aligned_cols=92  Identities=22%  Similarity=0.430  Sum_probs=79.9

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      ..|+|+|++|++|...+.  +.+||||++++. ..+.+|++ ++++.||+|||+|.|.+..   ....|.|+|||++. +
T Consensus         2 G~L~V~Vi~a~nL~~~d~--~~sDPYV~v~~g-~~~~kT~v-vk~t~nP~WnE~f~f~i~~---~~~~l~~~V~D~d~-~   73 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF--TSSDPYVVLTLG-NQKVKTRV-IKKNLNPVWNEELTLSVPN---PMAPLKLEVFDKDT-F   73 (145)
T ss_pred             eEEEEEEEeeECCCCCCC--CCcCcEEEEEEC-CEEEEeee-EcCCCCCeecccEEEEecC---CCCEEEEEEEECCC-C
Confidence            479999999999987774  689999999994 67889999 7789999999999999975   25689999999996 4


Q ss_pred             CCCceeEEEEEecceecccc
Q 023810           85 DTKKLIGSAKLKLKDVINDV  104 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~~~  104 (277)
                      +.+++||++.++|.++....
T Consensus        74 ~~dd~iG~a~i~l~~l~~~~   93 (145)
T cd04038          74 SKDDSMGEAEIDLEPLVEAA   93 (145)
T ss_pred             CCCCEEEEEEEEHHHhhhhh
Confidence            78899999999999887653

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.64  E-value=2.2e-15  Score=119.66  Aligned_cols=91  Identities=16%  Similarity=0.222  Sum_probs=76.0

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      ..|+|+|++|++|.. +.. +..||||++++. ..+.+|++ ++++.||+|||+|.|.+... .....|.|+|||++. .
T Consensus        28 ~~L~V~V~~A~~L~~-d~~-g~~DPYVkV~~~-~~~~kT~v-i~~t~nPvWNE~F~f~~~~~-~~~~~L~v~V~D~d~-~  101 (127)
T cd04032          28 ATLTVTVLRATGLWG-DYF-TSTDGYVKVFFG-GQEKRTEV-IWNNNNPRWNATFDFGSVEL-SPGGKLRFEVWDRDN-G  101 (127)
T ss_pred             EEEEEEEEECCCCCc-CcC-CCCCeEEEEEEC-CccccCce-ecCCCCCcCCCEEEEecccC-CCCCEEEEEEEeCCC-C
Confidence            589999999999984 444 789999999995 55889999 78899999999999975321 135789999999996 4


Q ss_pred             CCCceeEEEEEecceec
Q 023810           85 DTKKLIGSAKLKLKDVI  101 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~  101 (277)
                      +.++|||++.++|....
T Consensus       102 s~dd~IG~~~i~l~~~~  118 (127)
T cd04032         102 WDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             CCCCeeEEEEEEecCCc
Confidence            68999999999998654

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.64  E-value=1.6e-15  Score=123.99  Aligned_cols=107  Identities=19%  Similarity=0.223  Sum_probs=83.9

Q ss_pred             EEEEEEEEeeCCCCCCCC-------------CCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCce
Q 023810            6 EVEVTITSAKDLKNVNWR-------------HGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTT   72 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~-------------~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~   72 (277)
                      +|+|+|++|++|...+..             .+.+||||++.+. ..+.+|++ ++++.||+|||+|.|.+..... +..
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~-g~~~kT~v-~~~t~nPvWNE~f~f~v~~p~~-~~~   77 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA-GQKVKTSV-KKNSYNPEWNEQIVFPEMFPPL-CER   77 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC-CEeeecce-EcCCCCCCcceEEEEEeeCCCc-CCE
Confidence            379999999999987632             1368999999995 56679999 7889999999999999753222 468


Q ss_pred             EEEEEEEccCCCCCCceeEEEEEecceeccccCCCce----eeEEEEee
Q 023810           73 LIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGER----ASLTLKLK  117 (277)
Q Consensus        73 L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~----~~~~~~L~  117 (277)
                      |.|+|||++. .+.+++||++.|+|.+|...... .|    ...|+.|-
T Consensus        78 l~~~v~D~d~-~~~dd~iG~~~l~l~~l~~~~~~-~~lp~~~p~W~~ly  124 (151)
T cd04018          78 IKIQIRDWDR-VGNDDVIGTHFIDLSKISNSGDE-GFLPTFGPSFVNLY  124 (151)
T ss_pred             EEEEEEECCC-CCCCCEEEEEEEeHHHhccCCcc-ccCCccCceEEEee
Confidence            9999999986 46899999999999998775421 11    25677774

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.64  E-value=2.5e-15  Score=121.02  Aligned_cols=105  Identities=18%  Similarity=0.238  Sum_probs=85.0

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCcEEEEEECC---CCeEEeeecCCCCCCCccceeEEEecCCC-------------CCCC
Q 023810            7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDP---NKKCSTKVDDEGDTCPYWDETLAIPLPGP-------------VDDD   70 (277)
Q Consensus         7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~---~~~~~T~v~~~~~~nP~WnE~f~f~v~~~-------------~l~~   70 (277)
                      |+|+|++|++|... .. +.+||||+++++.   ..+.+|++ +.++.||.|||+|.|.+...             .+..
T Consensus         1 L~V~Vi~A~~L~~~-~~-g~~dPyv~v~~~~~~~~~~~rT~v-v~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~   77 (137)
T cd08675           1 LSVRVLECRDLALK-SN-GTCDPFARVTLNYSSKTDTKRTKV-KKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEK   77 (137)
T ss_pred             CEEEEEEccCCCcc-cC-CCCCcEEEEEEecCCcCCeeccce-eeCCCCCCcceEEEEEccccccccccccccccccccc
Confidence            68999999999877 44 8999999999953   56789998 77899999999999998653             2245


Q ss_pred             ceEEEEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecC
Q 023810           71 TTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP  119 (277)
Q Consensus        71 ~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~  119 (277)
                      ..|.|+|||.+. ...++|||++.|+|.++....    ....||.|...
T Consensus        78 ~~l~i~V~d~~~-~~~~~~IG~~~i~l~~l~~~~----~~~~W~~L~~~  121 (137)
T cd08675          78 SELRVELWHASM-VSGDDFLGEVRIPLQGLQQAG----SHQAWYFLQPR  121 (137)
T ss_pred             cEEEEEEEcCCc-CcCCcEEEEEEEehhhccCCC----cccceEecCCc
Confidence            679999999986 368899999999999987432    24678888553

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.63  E-value=2.1e-15  Score=119.33  Aligned_cols=119  Identities=17%  Similarity=0.210  Sum_probs=87.2

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC-CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN-KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~-~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      +|+|+|++|++|...+.. +.+||||++++... .+.+|++ +.++.||.|||+|.|.+..  .+...|.|+|||.+. .
T Consensus         1 ~lrV~Vi~a~~L~~~d~~-g~~DPYv~v~~~~~~~~~kT~~-v~~t~nP~Wne~f~f~~~~--~~~~~L~~~V~d~d~-~   75 (124)
T cd04037           1 LVRVYVVRARNLQPKDPN-GKSDPYLKIKLGKKKINDRDNY-IPNTLNPVFGKMFELEATL--PGNSILKISVMDYDL-L   75 (124)
T ss_pred             CEEEEEEECcCCCCCCCC-CCCCcEEEEEECCeeccceeeE-EECCCCCccceEEEEEecC--CCCCEEEEEEEECCC-C
Confidence            489999999999988865 89999999999533 2356776 5679999999999999754  235689999999986 4


Q ss_pred             CCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEe
Q 023810           85 DTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRE  135 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~  135 (277)
                      +.+++||++.|+|.+....   ..|...   +..++....|.|....++..
T Consensus        76 ~~dd~iG~~~i~l~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~  120 (124)
T cd04037          76 GSDDLIGETVIDLEDRFFS---KHRATC---GLPPTYEESGPNQWRDSLKP  120 (124)
T ss_pred             CCCceeEEEEEeecccccc---hHHHhc---cCCCcccccCceecCcccCc
Confidence            6889999999999886532   111111   22233335666666666544

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN03008 Phospholipase D delta

Probab=99.63  E-value=4.1e-15  Score=146.90  Aligned_cols=102  Identities=22%  Similarity=0.308  Sum_probs=84.5

Q ss_pred             CCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCCCceeEEEEEecceecccc
Q 023810           25 GPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDV  104 (277)
Q Consensus        25 g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~  104 (277)
                      +++||||++.++..++.||+| ++++.||+|||+|.|.|..   ....|.|+|||.+.+  .+++||++.|+|++|... 
T Consensus        75 ~tSDPYV~I~Lg~~rv~RTrV-i~n~~NPvWNE~F~f~vah---~~s~L~f~VkD~D~~--gaD~IG~a~IPL~~L~~G-  147 (868)
T PLN03008         75 ITSDPYVTVVVPQATLARTRV-LKNSQEPLWDEKFNISIAH---PFAYLEFQVKDDDVF--GAQIIGTAKIPVRDIASG-  147 (868)
T ss_pred             CCCCceEEEEECCcceeeEEe-CCCCCCCCcceeEEEEecC---CCceEEEEEEcCCcc--CCceeEEEEEEHHHcCCC-
Confidence            467999999996555679999 7889999999999999976   245899999999974  468999999999998774 


Q ss_pred             CCCceeeEEEEeecCCCC---CceEEEEEEEEEec
Q 023810          105 GLGERASLTLKLKRPSGR---PHGKVDVKVAVRES  136 (277)
Q Consensus       105 ~~~~~~~~~~~L~~~sg~---~~G~L~l~v~~~~~  136 (277)
                         +....|+.|....++   ..++|+|+++|.+.
T Consensus       148 ---e~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv  179 (868)
T PLN03008        148 ---ERISGWFPVLGASGKPPKAETAIFIDMKFTPF  179 (868)
T ss_pred             ---CceEEEEEccccCCCCCCCCcEEEEEEEEEEc
Confidence               345788998776543   46899999999886

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.63  E-value=2.7e-15  Score=119.87  Aligned_cols=92  Identities=21%  Similarity=0.294  Sum_probs=78.0

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|.|+|++|++|...+.. +..||||++.+.+    ..+.+|++ +.++.||+|||+|.|.+....+....|.|+|||.
T Consensus        13 ~~L~V~Vi~a~~L~~~d~~-~~~DpyV~v~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~   90 (133)
T cd08384          13 RGLIVGIIRCVNLAAMDAN-GYSDPFVKLYLKPDAGKKSKHKTQV-KKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDK   90 (133)
T ss_pred             CEEEEEEEEEcCCCCcCCC-CCCCcEEEEEEEcCCCccCCceeee-EeccCCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence            5899999999999988755 7899999999832    24578999 7889999999999999876445567899999998


Q ss_pred             cCCCCCCceeEEEEEecce
Q 023810           81 GNEEDTKKLIGSAKLKLKD   99 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~   99 (277)
                      +. ..++++||++.|+|..
T Consensus        91 d~-~~~~~~lG~~~i~l~~  108 (133)
T cd08384          91 DI-GKSNDYIGGLQLGINA  108 (133)
T ss_pred             CC-CCCccEEEEEEEecCC
Confidence            86 4678999999999974

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.63  E-value=3.7e-15  Score=121.96  Aligned_cols=99  Identities=25%  Similarity=0.402  Sum_probs=80.1

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----------------------------CeEEeeecCCCCCCCcc
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----------------------------KKCSTKVDDEGDTCPYW   55 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----------------------------~~~~T~v~~~~~~nP~W   55 (277)
                      ...|+|+|++|++|...+.. +.+||||++.+...                            ...+|++ +.++.||+|
T Consensus        27 ~~~L~V~vi~a~~L~~~d~~-g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v-~~~tlnP~W  104 (153)
T cd08676          27 IFVLKVTVIEAKGLLAKDVN-GFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEV-KPQTLNPVW  104 (153)
T ss_pred             eEEEEEEEEeccCCcccCCC-CCCCceEEEEEcccccccccccccccccccccccccccccccccEecce-ecCCCCCcc
Confidence            36899999999999988854 89999999998421                            2368888 788999999


Q ss_pred             ceeEEEecCCCCCCCceEEEEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810           56 DETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL  116 (277)
Q Consensus        56 nE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L  116 (277)
                      ||+|.|.+..  +....|.|+|||.+     ++|||++.|+|+++...   +  ...||.|
T Consensus       105 nE~F~f~v~~--~~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~~---~--~d~W~~L  153 (153)
T cd08676         105 NETFRFEVED--VSNDQLHLDIWDHD-----DDFLGCVNIPLKDLPSC---G--LDSWFKL  153 (153)
T ss_pred             ccEEEEEecc--CCCCEEEEEEEecC-----CCeEEEEEEEHHHhCCC---C--CCCeEeC
Confidence            9999999965  34578999999986     68999999999998832   1  3556654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.63  E-value=1.4e-15  Score=122.53  Aligned_cols=93  Identities=19%  Similarity=0.307  Sum_probs=78.2

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|+|++|++|...+ . +.+||||++.+.+.    .+.+|++ ++++.||+|||+|.|.|+...+.+..|.|+||+.
T Consensus        15 ~~L~V~V~~a~nL~~~~-~-~~~d~yVkv~l~~~~~~~~~~kT~v-~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~   91 (137)
T cd08409          15 NRLTVVVLRARGLRQLD-H-AHTSVYVKVSLMIHNKVVKTKKTEV-VDGAASPSFNESFSFKVTSRQLDTASLSLSVMQS   91 (137)
T ss_pred             CeEEEEEEEecCCCccc-C-CCCCeEEEEEEEECCEEeeeeeccc-EeCCCCCcccceEEEECCHHHhCccEEEEEEEeC
Confidence            47999999999998777 4 78999999998432    3568888 7889999999999999987667778899999999


Q ss_pred             cCCCCCCceeEEEEEecceec
Q 023810           81 GNEEDTKKLIGSAKLKLKDVI  101 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~  101 (277)
                      +. ..++++||++.|......
T Consensus        92 ~~-~~~~~~lG~v~ig~~~~~  111 (137)
T cd08409          92 GG-VRKSKLLGRVVLGPFMYA  111 (137)
T ss_pred             CC-CCCcceEEEEEECCcccC
Confidence            86 468899999999865443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.62  E-value=2.1e-15  Score=121.65  Aligned_cols=92  Identities=21%  Similarity=0.272  Sum_probs=78.7

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC--C---CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP--N---KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVH   79 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~--~---~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d   79 (277)
                      ..|.|+|++|++|...+.. +..||||++.+.+  +   .+.+|++ ++++.||+|||+|.|.+....+.+..|.|+||+
T Consensus        15 ~~L~V~VikarnL~~~~~~-~~~dpyVkv~llp~~~~~~~~~kT~v-~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~   92 (138)
T cd08408          15 GRLSVEVIKGSNFKNLAMN-KAPDTYVKLTLLNSDGQEISKSKTSI-RRGQPDPEFKETFVFQVALFQLSEVTLMFSVYN   92 (138)
T ss_pred             CeEEEEEEEecCCCccccC-CCCCeeEEEEEEeCCCcceeecccee-ecCCCCCcEeeeEEEECCHHHhCccEEEEEEEE
Confidence            5799999999999987754 7899999999832  2   2468998 678999999999999998766777899999999


Q ss_pred             ccCCCCCCceeEEEEEecce
Q 023810           80 AGNEEDTKKLIGSAKLKLKD   99 (277)
Q Consensus        80 ~~~~~~~d~~iG~~~v~L~~   99 (277)
                      .+. ..++++||++.|.+..
T Consensus        93 ~~~-~~~~~~iG~v~l~~~~  111 (138)
T cd08408          93 KRK-MKRKEMIGWFSLGLNS  111 (138)
T ss_pred             CCC-CCCCcEEEEEEECCcC
Confidence            986 5789999999998764

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.62  E-value=2.5e-15  Score=120.58  Aligned_cols=93  Identities=27%  Similarity=0.417  Sum_probs=77.6

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      .+|+|+|++|++|...+.. +.+||||++.+..    ..+.+|++ ++++.||.|||+|.|.+....+.+..|.|+|||.
T Consensus        15 ~~L~v~vi~a~~L~~~~~~-g~~dpyV~v~l~~~~~~~~~~kT~v-~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~   92 (136)
T cd08405          15 NRITVNIIKARNLKAMDIN-GTSDPYVKVWLMYKDKRVEKKKTVI-KKRTLNPVFNESFIFNIPLERLRETTLIITVMDK   92 (136)
T ss_pred             CeEEEEEEEeeCCCccccC-CCCCceEEEEEEeCCCccccccCcc-eeCCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence            4799999999999887754 8899999999831    23568988 7889999999999999875444456899999999


Q ss_pred             cCCCCCCceeEEEEEeccee
Q 023810           81 GNEEDTKKLIGSAKLKLKDV  100 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l  100 (277)
                      +. .++++|||++.|++.+.
T Consensus        93 ~~-~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          93 DR-LSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             CC-CCCCcEeEEEEECCccC
Confidence            86 46889999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.62  E-value=2.9e-15  Score=120.31  Aligned_cols=92  Identities=20%  Similarity=0.295  Sum_probs=77.8

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|.|+|++|++|...+.. +.+||||++.+...    .+.+|++ ++++.||.|||+|.|.+....+....|.|+|||.
T Consensus        15 ~~L~V~vi~a~~L~~~d~~-g~~Dpyv~v~l~~~~~~~~~~kT~v-~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~   92 (136)
T cd08404          15 NRLTVVVLKARHLPKMDVS-GLADPYVKVNLYYGKKRISKKKTHV-KKCTLNPVFNESFVFDIPSEELEDISVEFLVLDS   92 (136)
T ss_pred             CeEEEEEEEeeCCCccccC-CCCCeEEEEEEEcCCceeeeEcCcc-ccCCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence            4799999999999988765 89999999998422    2467888 7889999999999999976445567799999999


Q ss_pred             cCCCCCCceeEEEEEecce
Q 023810           81 GNEEDTKKLIGSAKLKLKD   99 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~   99 (277)
                      +. .+++++||++.|++..
T Consensus        93 d~-~~~~~~iG~~~~~~~~  110 (136)
T cd08404          93 DR-VTKNEVIGRLVLGPKA  110 (136)
T ss_pred             CC-CCCCccEEEEEECCcC
Confidence            87 4788999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.61  E-value=3.5e-15  Score=119.78  Aligned_cols=92  Identities=24%  Similarity=0.366  Sum_probs=77.1

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC--C--CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP--N--KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~--~--~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|+|++|++|...+.. +.+||||++.+..  .  .+.+|++ ++++.||.|||+|.|.+....+....|.|+|||.
T Consensus        15 ~~l~V~Vi~a~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~   92 (136)
T cd08402          15 GKLTVVILEAKNLKKMDVG-GLSDPYVKIHLMQNGKRLKKKKTTI-KKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDY   92 (136)
T ss_pred             CeEEEEEEEeeCCCcccCC-CCCCCeEEEEEEECCcccceeeccc-eeCCCCCcccceEEEECCHHHhCCCEEEEEEEeC
Confidence            5799999999999987754 8899999999832  1  3567888 7889999999999999876445556899999999


Q ss_pred             cCCCCCCceeEEEEEecce
Q 023810           81 GNEEDTKKLIGSAKLKLKD   99 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~   99 (277)
                      +. .++++|||++.|++..
T Consensus        93 ~~-~~~~~~iG~~~i~~~~  110 (136)
T cd08402          93 DR-IGKNDPIGKVVLGCNA  110 (136)
T ss_pred             CC-CCCCceeEEEEECCcc
Confidence            86 4688999999999865

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.61  E-value=1.4e-15  Score=121.24  Aligned_cols=106  Identities=21%  Similarity=0.327  Sum_probs=83.8

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|+|++|++|+..+.. +.+||||++.+...    .+.+|++ +.++.||.|||+|.|.+....+....|.|+|||.
T Consensus        14 ~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~~T~~-~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~   91 (134)
T cd00276          14 ERLTVVVLKARNLPPSDGK-GLSDPYVKVSLLQGGKKLKKKKTSV-KKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDK   91 (134)
T ss_pred             CEEEEEEEEeeCCCCccCC-CCCCcEEEEEEEcCCeEeeeecCcc-eecCCCCeeeeeEEEECCHHHhCCcEEEEEEEec
Confidence            4899999999999987744 78999999999432    2568888 7789999999999999976444467899999999


Q ss_pred             cCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecC
Q 023810           81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP  119 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~  119 (277)
                      +.. ..+++||.+.|+|.+  ..    .....|+.|.+.
T Consensus        92 ~~~-~~~~~lG~~~i~l~~--~~----~~~~~W~~l~~~  123 (134)
T cd00276          92 DSV-GRNEVIGQVVLGPDS--GG----EELEHWNEMLAS  123 (134)
T ss_pred             CCC-CCCceeEEEEECCCC--CC----cHHHHHHHHHhC
Confidence            864 688999999999988  22    223455666543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.61  E-value=5.3e-15  Score=118.72  Aligned_cols=90  Identities=18%  Similarity=0.298  Sum_probs=75.1

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC-C---CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP-N---KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~-~---~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|+|++|++|...+.. +.+||||++.+.. .   .+.+|++ ++++.||+|||+|.|.+....+.+..|.|+|||.
T Consensus        14 ~~L~V~vi~a~~L~~~d~~-g~~DPyV~v~l~~~~~~~~~~kT~v-~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~   91 (135)
T cd08410          14 GRLNVDIIRAKQLLQTDMS-QGSDPFVKIQLVHGLKLIKTKKTSC-MRGTIDPFYNESFSFKVPQEELENVSLVFTVYGH   91 (135)
T ss_pred             CeEEEEEEEecCCCcccCC-CCCCeEEEEEEEcCCcccceEcCcc-ccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence            5799999999999988765 8999999999732 2   3468888 7889999999999999976555556799999999


Q ss_pred             cCCCCCCceeEEEEEec
Q 023810           81 GNEEDTKKLIGSAKLKL   97 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L   97 (277)
                      +. ..++++||++.|..
T Consensus        92 d~-~~~~~~iG~~~l~~  107 (135)
T cd08410          92 NV-KSSNDFIGRIVIGQ  107 (135)
T ss_pred             CC-CCCCcEEEEEEEcC
Confidence            86 47899999988754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=7e-15  Score=138.69  Aligned_cols=125  Identities=21%  Similarity=0.269  Sum_probs=102.0

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN   82 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~   82 (277)
                      ..|.|+|++|++|...+ ..+.+||||++++  |...+.+|++ .++++||.|||+|.|.|....+....|.|.|||.++
T Consensus       167 ~~L~V~V~qa~~Lp~~d-~~g~sdpyVK~~llPdk~~k~kT~v-~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr  244 (421)
T KOG1028|consen  167 NLLTVRVIQAHDLPAKD-RGGTSDPYVKVYLLPDKKGKFKTRV-HRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR  244 (421)
T ss_pred             CEEEEEEEEecCCCccc-CCCCCCCeeEEEEcCCCCCcceeee-eecCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence            57999999999999888 4478999999999  4456789999 788999999999999987766778999999999997


Q ss_pred             CCCCCceeEEEEEecceeccccCCCceeeEEEEeecC---CCCCceEEEEEEEEEec
Q 023810           83 EEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP---SGRPHGKVDVKVAVRES  136 (277)
Q Consensus        83 ~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~---sg~~~G~L~l~v~~~~~  136 (277)
                       ++++++||++.++|..+.....    ...|..|...   +....|+|.+++++...
T Consensus       245 -fsr~~~iGev~~~l~~~~~~~~----~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~  296 (421)
T KOG1028|consen  245 -FSRHDFIGEVILPLGEVDLLST----TLFWKDLQPSSTDSEELAGELLLSLCYLPT  296 (421)
T ss_pred             -cccccEEEEEEecCcccccccc----ceeeeccccccCCcccccceEEEEEEeecC
Confidence             5899999999999888765432    3456666442   22233899999998765

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.60  E-value=9.7e-15  Score=116.32  Aligned_cols=106  Identities=25%  Similarity=0.327  Sum_probs=86.5

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|+|++|++|...+.. +..||||++.+..    ..+.+|++ +.++.||.|||+|.|.+.... ....|.|+|||.
T Consensus        13 ~~l~v~i~~a~nL~~~~~~-~~~dpyv~v~~~~~~~~~~~~rT~v-~~~~~~P~wne~f~~~~~~~~-~~~~l~v~v~d~   89 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPN-GLSDPYVKLKLIPDPKNETKQKTKT-IKKTLNPVWNETFTFDLKPAD-KDRRLSIEVWDW   89 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCC-CCCCCcEEEEEEcCCCCCceeccee-ecCCCCCCccceEEEeCCchh-cCCEEEEEEEEC
Confidence            4799999999999877654 7899999999942    35679998 788999999999999987532 246899999998


Q ss_pred             cCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecC
Q 023810           81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP  119 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~  119 (277)
                      +. ...+++||++.++|+++...     ....||.|.+.
T Consensus        90 ~~-~~~~~~iG~~~~~l~~l~~~-----~~~~w~~L~~~  122 (131)
T cd04026          90 DR-TTRNDFMGSLSFGVSELIKM-----PVDGWYKLLNQ  122 (131)
T ss_pred             CC-CCCcceeEEEEEeHHHhCcC-----ccCceEECcCc
Confidence            86 46889999999999998754     24678888653

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.60  E-value=1.3e-14  Score=114.40  Aligned_cols=95  Identities=25%  Similarity=0.314  Sum_probs=78.6

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEe-cCCCCCCCceEEEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIP-LPGPVDDDTTLIIDVVH   79 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~-v~~~~l~~~~L~v~V~d   79 (277)
                      ..|+|+|++|++|...+.. +..||||++.+.+    ..+.+|++ ++++.||.|||+|.|. +....+.+..|.|+|||
T Consensus        15 ~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~~~~~~~~~rT~v-~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d   92 (123)
T cd04035          15 SALHCTIIRAKGLKAMDAN-GLSDPYVKLNLLPGASKATKLRTKT-VHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD   92 (123)
T ss_pred             CEEEEEEEEeeCCCCCCCC-CCCCceEEEEEecCCCCCCceeeee-ecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence            4799999999999987764 7899999999832    24679998 7889999999999996 44323445689999999


Q ss_pred             ccCCCCCCceeEEEEEecceeccc
Q 023810           80 AGNEEDTKKLIGSAKLKLKDVIND  103 (277)
Q Consensus        80 ~~~~~~~d~~iG~~~v~L~~l~~~  103 (277)
                      .+..  .+++||++.|+|++|..+
T Consensus        93 ~~~~--~~~~iG~~~i~l~~l~~~  114 (123)
T cd04035          93 EDRF--GNDFLGETRIPLKKLKPN  114 (123)
T ss_pred             cCCc--CCeeEEEEEEEcccCCCC
Confidence            9863  788999999999998865

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.59  E-value=7.8e-15  Score=117.42  Aligned_cols=91  Identities=27%  Similarity=0.385  Sum_probs=76.4

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC--C--CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD--P--NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld--~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|+|++|++|...+.. +.+||||++.+.  .  ..+.+|++ ++++.||.|||+|.|.+....+.+..|.|+|||.
T Consensus        14 ~~L~V~v~~A~~L~~~d~~-g~~dpyvkv~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~   91 (134)
T cd08403          14 GRLTLTIIKARNLKAMDIT-GFSDPYVKVSLMCEGRRLKKKKTSV-KKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDY   91 (134)
T ss_pred             CEEEEEEEEeeCCCccccC-CCCCceEEEEEEeCCcccceecCCc-ccCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence            4799999999999988765 899999999983  2  23568888 7889999999999999876445556799999999


Q ss_pred             cCCCCCCceeEEEEEecc
Q 023810           81 GNEEDTKKLIGSAKLKLK   98 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~   98 (277)
                      +. .++++|||++.|++.
T Consensus        92 ~~-~~~~~~IG~~~l~~~  108 (134)
T cd08403          92 DR-VGHNELIGVCRVGPN  108 (134)
T ss_pred             CC-CCCCceeEEEEECCC
Confidence            86 478999999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.56  E-value=2.9e-14  Score=113.87  Aligned_cols=93  Identities=13%  Similarity=0.205  Sum_probs=74.1

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CCC--CeEEeeecCCCC-CCCccceeEEEecCCCCCCCceEEEEEE
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DPN--KKCSTKVDDEGD-TCPYWDETLAIPLPGPVDDDTTLIIDVV   78 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~~--~~~~T~v~~~~~-~nP~WnE~f~f~v~~~~l~~~~L~v~V~   78 (277)
                      ...|.|+|++|++|+.... ....||||++++  +++  .+.+|++ ++++ .||+|||+|.|+|... ..+..|.|+||
T Consensus        13 ~~rLtV~VikarnL~~~~~-~~~~dpYVKV~L~~~~k~~~KkKT~v-~k~t~~~P~fNEsF~Fdv~~~-~~~v~l~v~v~   89 (135)
T cd08692          13 NSRIQLQILEAQNLPSSST-PLTLSFFVKVGMFSTGGLLYKKKTRL-VKSSNGQVKWGETMIFPVTQQ-EHGIQFLIKLY   89 (135)
T ss_pred             CCeEEEEEEEccCCCcccC-CCCCCcEEEEEEEECCCcceeecCcc-EECCCCCceecceEEEeCCch-hheeEEEEEEE
Confidence            3579999999999987542 356799999998  222  4678888 6666 4699999999999874 34567899999


Q ss_pred             EccCCCCCCceeEEEEEeccee
Q 023810           79 HAGNEEDTKKLIGSAKLKLKDV  100 (277)
Q Consensus        79 d~~~~~~~d~~iG~~~v~L~~l  100 (277)
                      |.+. .+++++||++.+.++..
T Consensus        90 d~~~-~~~n~~IG~v~lG~~~~  110 (135)
T cd08692          90 SRSS-VRRKHFLGQVWISSDSS  110 (135)
T ss_pred             eCCC-CcCCceEEEEEECCccC
Confidence            9986 47899999999998763

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.56  E-value=3.4e-15  Score=136.65  Aligned_cols=97  Identities=27%  Similarity=0.380  Sum_probs=84.5

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CC--CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DP--NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|+|.+|++|...+- +|-+||||++.+  |+  ..+++|++ ++.++||+|||+|+|.+.+.+ .++.|.|+|||+
T Consensus       180 ~~l~v~i~ea~NLiPMDp-NGlSDPYvk~kliPD~~~~sKqKTkT-ik~~LNP~wNEtftf~Lkp~D-kdrRlsiEvWDW  256 (683)
T KOG0696|consen  180 DVLTVTIKEAKNLIPMDP-NGLSDPYVKLKLIPDPKNESKQKTKT-IKATLNPVWNETFTFKLKPSD-KDRRLSIEVWDW  256 (683)
T ss_pred             ceEEEEehhhccccccCC-CCCCCcceeEEeccCCcchhhhhhhh-hhhhcCccccceeEEeccccc-ccceeEEEEecc
Confidence            478999999999999885 499999999999  33  35678998 889999999999999998754 467899999999


Q ss_pred             cCCCCCCceeEEEEEecceeccccC
Q 023810           81 GNEEDTKKLIGSAKLKLKDVINDVG  105 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~~~  105 (277)
                      ++ .++++|+|+..+.|++|.....
T Consensus       257 Dr-TsRNDFMGslSFgisEl~K~p~  280 (683)
T KOG0696|consen  257 DR-TSRNDFMGSLSFGISELQKAPV  280 (683)
T ss_pred             cc-cccccccceecccHHHHhhcch
Confidence            97 5899999999999999987653

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.56  E-value=4.7e-14  Score=110.79  Aligned_cols=98  Identities=18%  Similarity=0.279  Sum_probs=78.0

Q ss_pred             EEEeeCCCCCCCCCCCCCcEEEEEECCCC------eEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC-
Q 023810           11 ITSAKDLKNVNWRHGPNRPYAVLWVDPNK------KCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE-   83 (277)
Q Consensus        11 v~~A~~L~~~~~~~g~~dpYv~v~ld~~~------~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~-   83 (277)
                      .++|++|...+.. +.+||||++++....      +.+|++ ++++.||+|||+|.|.+...  ....|.|+|||++.. 
T Consensus         6 ~i~a~~L~~~d~~-g~~DPyv~v~~~~~~~~~~~~~~kT~v-i~~t~nP~wne~f~f~~~~~--~~~~l~~~V~d~d~~~   81 (120)
T cd04048           6 SISCRNLLDKDVL-SKSDPFVVVYVKTGGSGQWVEIGRTEV-IKNNLNPDFVTTFTVDYYFE--EVQKLRFEVYDVDSKS   81 (120)
T ss_pred             EEEccCCCCCCCC-CCCCcEEEEEEEcCCCCceEEeccEeE-eCCCCCCCceEEEEEEEEeE--eeeEEEEEEEEecCCc
Confidence            4889999988865 899999999995432      479999 78899999999999986432  245799999999851 


Q ss_pred             --CCCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810           84 --EDTKKLIGSAKLKLKDVINDVGLGERASLTLKL  116 (277)
Q Consensus        84 --~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L  116 (277)
                        .+.++|||++.++|.+|+...    ....++.|
T Consensus        82 ~~~~~~d~iG~~~i~l~~l~~~~----~~~~~~~l  112 (120)
T cd04048          82 KDLSDHDFLGEAECTLGEIVSSP----GQKLTLPL  112 (120)
T ss_pred             CCCCCCcEEEEEEEEHHHHhcCC----CcEEEEEc
Confidence              468899999999999998653    23456666

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.48  E-value=3.6e-13  Score=103.97  Aligned_cols=91  Identities=21%  Similarity=0.331  Sum_probs=71.9

Q ss_pred             EEEEEeeCCCCCCCCCCCCCcEEEEEECCC-----CeEEeeecCCCCCCCccceeEEEecCCC-CC-CCceEEEEEEEcc
Q 023810            9 VTITSAKDLKNVNWRHGPNRPYAVLWVDPN-----KKCSTKVDDEGDTCPYWDETLAIPLPGP-VD-DDTTLIIDVVHAG   81 (277)
Q Consensus         9 V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~-----~~~~T~v~~~~~~nP~WnE~f~f~v~~~-~l-~~~~L~v~V~d~~   81 (277)
                      +-.++|++|...+.. +.+||||++++...     .+.+|++ ++++.||+|| +|.|.+..- .. ....|.|+|||++
T Consensus         4 ~~~i~a~~L~~~d~~-~~~DPyv~v~~~~~~~~~~~~~kT~v-i~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d   80 (110)
T cd04047           4 ELQFSGKKLDKKDFF-GKSDPFLEISRQSEDGTWVLVYRTEV-IKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD   80 (110)
T ss_pred             EEEEEeCCCCCCCCC-CCCCeeEEEEEECCCCCEEEEEeeeE-eccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence            345799999988865 89999999998432     2479999 7889999999 788875421 01 1468999999998


Q ss_pred             CCCCCCceeEEEEEecceeccc
Q 023810           82 NEEDTKKLIGSAKLKLKDVIND  103 (277)
Q Consensus        82 ~~~~~d~~iG~~~v~L~~l~~~  103 (277)
                      . .+++++||++.++|++|...
T Consensus        81 ~-~~~d~~iG~~~~~l~~l~~~  101 (110)
T cd04047          81 S-SGKHDLIGEFETTLDELLKS  101 (110)
T ss_pred             C-CCCCcEEEEEEEEHHHHhcC
Confidence            6 46889999999999999844

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=9.1e-14  Score=132.14  Aligned_cols=120  Identities=15%  Similarity=0.334  Sum_probs=97.8

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC--
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE--   83 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~--   83 (277)
                      .+++||+.|.+|...+. +|++||||.+.+ ++.+.||++ +...+||+|||+|+|.+.++   ...|.|.|||++..  
T Consensus       296 kitltvlcaqgl~akdk-tg~sdpyvt~qv-~ktkrrtrt-i~~~lnpvw~ekfhfechns---tdrikvrvwded~dlk  369 (1283)
T KOG1011|consen  296 KITLTVLCAQGLIAKDK-TGKSDPYVTAQV-GKTKRRTRT-IHQELNPVWNEKFHFECHNS---TDRIKVRVWDEDNDLK  369 (1283)
T ss_pred             eeEEeeeecccceeccc-CCCCCCcEEEee-cccchhhHh-hhhccchhhhhheeeeecCC---CceeEEEEecCcccHH
Confidence            68899999999998885 499999999999 488889998 88899999999999999873   56799999997642  


Q ss_pred             --------CCCCceeEEEEEecceeccccCCCceeeEEEEeecC--CCCCceEEEEEEEEEecC
Q 023810           84 --------EDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP--SGRPHGKVDVKVAVRESR  137 (277)
Q Consensus        84 --------~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~--sg~~~G~L~l~v~~~~~~  137 (277)
                              ..+|+|||++.|.+..|.-.      ..+||.|.+.  .....|-|+|.|++.-++
T Consensus       370 sklrqkl~resddflgqtvievrtlsge------mdvwynlekrtdksavsgairlhisveikg  427 (1283)
T KOG1011|consen  370 SKLRQKLTRESDDFLGQTVIEVRTLSGE------MDVWYNLEKRTDKSAVSGAIRLHISVEIKG  427 (1283)
T ss_pred             HHHHHHhhhcccccccceeEEEEecccc------hhhhcchhhccchhhccceEEEEEEEEEcC
Confidence                    25789999999988776432      5789999543  344678888888876553

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.47  E-value=2.2e-13  Score=145.61  Aligned_cols=118  Identities=19%  Similarity=0.283  Sum_probs=94.1

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      ..|.|+|+++++|. .+ + +++||||++.++...+.+|++ ++++.||+|||.|+|.++... ....|+|+|||++.+ 
T Consensus      1980 G~L~V~V~~a~nl~-~~-~-~~sdPyv~l~~g~~~~~kTkv-vk~~~nP~Wne~f~~~~~~p~-~~~~l~iev~d~d~f- 2053 (2102)
T PLN03200       1980 GSLTVTIKRGNNLK-QS-M-GNTNAFCKLTLGNGPPRQTKV-VSHSSSPEWKEGFTWAFDSPP-KGQKLHISCKSKNTF- 2053 (2102)
T ss_pred             cceEEEEeeccccc-cc-c-CCCCCeEEEEECCCCcccccc-cCCCCCCCcccceeeeecCCC-CCCceEEEEEecCcc-
Confidence            67999999999998 33 3 899999999996455779999 899999999999998887632 346799999999964 


Q ss_pred             CCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceE---EEEEEEEE
Q 023810           85 DTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGK---VDVKVAVR  134 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~---L~l~v~~~  134 (277)
                      + ++.||.+.|+|.++..+.    ....||.|.. +++..|.   |.|.++..
T Consensus      2054 ~-kd~~G~~~i~l~~vv~~~----~~~~~~~L~~-~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200       2054 G-KSSLGKVTIQIDRVVMEG----TYSGEYSLNP-ESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred             C-CCCCceEEEEHHHHhcCc----eeeeeeecCc-ccccCCCcceEEEEEEec
Confidence            4 457999999999998753    3467888853 3444566   88887664

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.46  E-value=2.4e-13  Score=98.82  Aligned_cols=83  Identities=31%  Similarity=0.505  Sum_probs=68.6

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCC--eEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNK--KCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~--~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      |+|+|++|++|...+.. +..++|+++.+....  +.+|++ ..++.+|.|||+|.|.+....  ...|.|+||+.+. .
T Consensus         1 L~v~I~~a~~L~~~~~~-~~~~~yv~v~~~~~~~~~~~T~~-~~~~~~P~w~e~~~~~~~~~~--~~~l~~~V~~~~~-~   75 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSN-GKPDPYVRVSVNGSESTKYKTKV-KKNTSNPVWNEEFEFPLDDPD--LDSLSFEVWDKDS-F   75 (85)
T ss_dssp             EEEEEEEEESSSSSSTT-SSBEEEEEEEEETTTCEEEEECC-BSSBSSEEEEEEEEEEESHGC--GTEEEEEEEEETS-S
T ss_pred             CEEEEEEEECCCCcccC-Ccccccceeecceeeeeeeeeee-eeccccceeeeeeeeeeeccc--ccceEEEEEECCC-C
Confidence            78999999999986643 789999999995443  489998 778899999999999976633  3459999999986 4


Q ss_pred             CCCceeEEEE
Q 023810           85 DTKKLIGSAK   94 (277)
Q Consensus        85 ~~d~~iG~~~   94 (277)
                      ..+++||++.
T Consensus        76 ~~~~~iG~~~   85 (85)
T PF00168_consen   76 GKDELIGEVK   85 (85)
T ss_dssp             SSEEEEEEEE
T ss_pred             CCCCEEEEEC
Confidence            5689999874

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.35  E-value=4e-12  Score=101.43  Aligned_cols=96  Identities=19%  Similarity=0.220  Sum_probs=77.0

Q ss_pred             EEEEEEEEeeCCCCCCC-CCC--CCCcEEEEEECC--CCeEEeeecCCCCCC--CccceeEEEecCC-------------
Q 023810            6 EVEVTITSAKDLKNVNW-RHG--PNRPYAVLWVDP--NKKCSTKVDDEGDTC--PYWDETLAIPLPG-------------   65 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~-~~g--~~dpYv~v~ld~--~~~~~T~v~~~~~~n--P~WnE~f~f~v~~-------------   65 (277)
                      .|+|.|.+|+++...+. .++  .+|+||++++++  ..+++|.| ..+++|  |.||+.|.|++..             
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDV-HyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~   79 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDV-HYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE   79 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccce-EEecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence            48999999999654321 125  499999999965  46789999 677889  9999999988765             


Q ss_pred             --------CCCCCceEEEEEEEccCCCCCCceeEEEEEecceeccc
Q 023810           66 --------PVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVIND  103 (277)
Q Consensus        66 --------~~l~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~  103 (277)
                              +.+....|.|+|||.+. ++.+++||++.++|..+...
T Consensus        80 ~~~~~~~~e~~~~~~L~lqvwD~D~-~s~dd~iG~~~l~l~~l~~~  124 (133)
T cd08374          80 HFWSLDETEYKIPPKLTLQVWDNDK-FSPDDFLGSLELDLSILPRP  124 (133)
T ss_pred             cccccCcceEecCcEEEEEEEECcc-cCCCCcceEEEEEhhhcccc
Confidence                    23445779999999997 57899999999999987655

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.35  E-value=1.5e-11  Score=91.34  Aligned_cols=93  Identities=28%  Similarity=0.480  Sum_probs=76.2

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC--CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN--KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE   83 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~--~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~   83 (277)
                      +|.|+|+++++|...... ...++||++.+...  ...+|++ ..++.||.|||+|.|.+...  ....|.|+||+....
T Consensus         1 ~l~i~i~~~~~l~~~~~~-~~~~~yv~v~~~~~~~~~~~T~~-~~~~~~P~w~e~~~~~~~~~--~~~~l~i~v~~~~~~   76 (101)
T smart00239        1 TLTVKIISARNLPKKDKK-GKSDPYVKVSLDGDPKEKKKTKV-VKNTLNPVWNETFEFEVPPP--ELAELEIEVYDKDRF   76 (101)
T ss_pred             CeEEEEEEeeCCCCCCCC-CCCCceEEEEEeCCccceEeeeE-ecCCCCCcccceEEEEecCc--ccCEEEEEEEecCCc
Confidence            378999999999876543 57899999999644  4788988 66777999999999999762  267899999998853


Q ss_pred             CCCCceeEEEEEecceeccc
Q 023810           84 EDTKKLIGSAKLKLKDVIND  103 (277)
Q Consensus        84 ~~~d~~iG~~~v~L~~l~~~  103 (277)
                       ..+.+||.+.++|.++...
T Consensus        77 -~~~~~~G~~~~~l~~~~~~   95 (101)
T smart00239       77 -GRDDFIGQVTIPLSDLLLG   95 (101)
T ss_pred             -cCCceeEEEEEEHHHcccC
Confidence             4688999999999888665

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd00030 C2 C2 domain

Probab=99.32  E-value=2.8e-11  Score=89.28  Aligned_cols=90  Identities=24%  Similarity=0.509  Sum_probs=75.0

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCC
Q 023810            7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDT   86 (277)
Q Consensus         7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~   86 (277)
                      |.|.|++|++|...... ...++||++.++.....+|++ ..++.||.|||.|.|.+...  ....|.|+||+.+.. ..
T Consensus         1 l~v~i~~~~~l~~~~~~-~~~~~~v~v~~~~~~~~~T~~-~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~-~~   75 (102)
T cd00030           1 LRVTVIEARNLPAKDLN-GKSDPYVKVSLGGKQKFKTKV-VKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRF-SK   75 (102)
T ss_pred             CEEEEEeeeCCCCcCCC-CCCCcEEEEEeccCceEecce-eCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCC-CC
Confidence            57999999999875533 689999999996447788888 66789999999999999752  356799999998863 56


Q ss_pred             CceeEEEEEecceec
Q 023810           87 KKLIGSAKLKLKDVI  101 (277)
Q Consensus        87 d~~iG~~~v~L~~l~  101 (277)
                      +++||.+.+++.++.
T Consensus        76 ~~~ig~~~~~l~~l~   90 (102)
T cd00030          76 DDFLGEVEIPLSELL   90 (102)
T ss_pred             CceeEEEEEeHHHhh
Confidence            789999999999987

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=99.31  E-value=5.6e-12  Score=95.45  Aligned_cols=87  Identities=24%  Similarity=0.386  Sum_probs=72.8

Q ss_pred             EEEEEEEeeCCCCCCC--CCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            7 VEVTITSAKDLKNVNW--RHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         7 L~V~v~~A~~L~~~~~--~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      |+|+|.+|++|.+...  +.++.++||+++++...+.||++    +.|+.|||+|.|+|..    ...|.|.|||+..  
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~----srnd~WnE~F~i~Vdk----~nEiel~VyDk~~--   70 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP----SRNDRWNEDFEIPVEK----NNEEEVIVYDKGG--   70 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC----CCCCcccceEEEEecC----CcEEEEEEEeCCC--
Confidence            6899999999988762  33788999999997677889998    4799999999999953    5689999999874  


Q ss_pred             CCCceeEEEEEecceeccc
Q 023810           85 DTKKLIGSAKLKLKDVIND  103 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~~  103 (277)
                      ...--||...|.|++|...
T Consensus        71 ~~~~Pi~llW~~~sdi~Ee   89 (109)
T cd08689          71 DQPVPVGLLWLRLSDIAEE   89 (109)
T ss_pred             CeecceeeehhhHHHHHHH
Confidence            3445699999999998865

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02270 phospholipase D alpha

Probab=99.30  E-value=3.6e-11  Score=119.11  Aligned_cols=122  Identities=20%  Similarity=0.273  Sum_probs=97.8

Q ss_pred             eEEEEEEEEeeCCCCC-----------------CCCCCCCCcEEEEEECCCCeEEeeecCCC-CCCCccceeEEEecCCC
Q 023810            5 YEVEVTITSAKDLKNV-----------------NWRHGPNRPYAVLWVDPNKKCSTKVDDEG-DTCPYWDETLAIPLPGP   66 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~-----------------~~~~g~~dpYv~v~ld~~~~~~T~v~~~~-~~nP~WnE~f~f~v~~~   66 (277)
                      .+|+|+|.+|++|.+.                 ....+.+++||.+.++.....||++ +++ ..||+|||+|.+.|...
T Consensus         8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~-~~~~~~~p~w~e~f~i~~ah~   86 (808)
T PLN02270          8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRK-IENEPKNPRWYESFHIYCAHM   86 (808)
T ss_pred             cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEee-cCCCCCCCccccceEEeeccC
Confidence            5799999999999752                 1112467999999998677789999 666 46999999999999762


Q ss_pred             CCCCceEEEEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCC---ceEEEEEEEEEec
Q 023810           67 VDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP---HGKVDVKVAVRES  136 (277)
Q Consensus        67 ~l~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~---~G~L~l~v~~~~~  136 (277)
                         -..|.|.|.|.+.+  ...+||.+.||+.+|++.    +....||+|...++++   .-+|+|+++|.+.
T Consensus        87 ---~~~v~f~vkd~~~~--g~~~ig~~~~p~~~~~~g----~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~  150 (808)
T PLN02270         87 ---ASNIIFTVKDDNPI--GATLIGRAYIPVEEILDG----EEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV  150 (808)
T ss_pred             ---cceEEEEEecCCcc--CceEEEEEEEEHHHhcCC----CccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence               46799999999864  456999999999999875    3467889988776654   2489999999885

>PLN02223 phosphoinositide phospholipase C

Probab=99.30  E-value=3.3e-11  Score=115.01  Aligned_cols=117  Identities=17%  Similarity=0.235  Sum_probs=85.9

Q ss_pred             eEEEEEEEEeeCCC-C---CCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEE
Q 023810            5 YEVEVTITSAKDLK-N---VNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIID   76 (277)
Q Consensus         5 ~~L~V~v~~A~~L~-~---~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~   76 (277)
                      ++|.|+|+++.++. +   ........||||+|.+-+    ..+.+|+| .+++.||+|||+|.|.|...  +-..|+|+
T Consensus       409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v-~nNg~nPvWne~F~F~i~~P--ELAlLrf~  485 (537)
T PLN02223        409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTV-KNNEWKPTWGEEFTFPLTYP--DLALISFE  485 (537)
T ss_pred             eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEe-CCCCcCceecceeEEEEEcc--CceEEEEE
Confidence            47999999999863 1   111124679999999922    34567777 78899999999999998753  34579999


Q ss_pred             EEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCC--ceEEEEEEE
Q 023810           77 VVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP--HGKVDVKVA  132 (277)
Q Consensus        77 V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~--~G~L~l~v~  132 (277)
                      |+|.+. ...++|||++.+||+.|..+.       ++++|++..++.  .-+|.+++.
T Consensus       486 V~D~D~-~~~ddfiGQ~~LPv~~Lr~Gy-------R~VpL~~~~g~~l~~~~Ll~~f~  535 (537)
T PLN02223        486 VYDYEV-STADAFCGQTCLPVSELIEGI-------RAVPLYDERGKACSSTMLLTRFK  535 (537)
T ss_pred             EEecCC-CCCCcEEEEEecchHHhcCCc-------eeEeccCCCcCCCCCceEEEEEE
Confidence            999985 367899999999999987653       456787766654  234444443

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.30  E-value=9.7e-12  Score=119.57  Aligned_cols=125  Identities=23%  Similarity=0.350  Sum_probs=105.9

Q ss_pred             CCCceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            1 MASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         1 m~~~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      |+....|.|.|.+||+|...+.. +..|+||.|.+|.....||.+ +.+++.|.|.|+|.|.+..   ....|.|-|||+
T Consensus         1 ~~~~~sl~vki~E~knL~~~~~~-g~~D~yC~v~lD~E~v~RT~t-v~ksL~PF~gEe~~~~iP~---~F~~l~fYv~D~   75 (800)
T KOG2059|consen    1 VRVEQSLKVKIGEAKNLPSYGPS-GMRDCYCTVNLDQEEVCRTAT-VEKSLCPFFGEEFYFEIPR---TFRYLSFYVWDR   75 (800)
T ss_pred             CccccceeEEEeecccCCCCCCC-CCcCcceEEeecchhhhhhhh-hhhhcCCccccceEEecCc---ceeeEEEEEecc
Confidence            56677899999999999988765 899999999999788899999 8899999999999999986   246799999999


Q ss_pred             cCCCCCCceeEEEEEecceeccccCCCceeeEEEEe--ecCCCCCceEEEEEEEEEec
Q 023810           81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL--KRPSGRPHGKVDVKVAVRES  136 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L--~~~sg~~~G~L~l~v~~~~~  136 (277)
                      +  .++|+.||++-|.=.+|..-...    .-|+.|  .++...++|+|+|++.+.+.
T Consensus        76 d--~~~D~~IGKvai~re~l~~~~~~----d~W~~L~~VD~dsEVQG~v~l~l~~~e~  127 (800)
T KOG2059|consen   76 D--LKRDDIIGKVAIKREDLHMYPGK----DTWFSLQPVDPDSEVQGKVHLELALTEA  127 (800)
T ss_pred             c--cccccccceeeeeHHHHhhCCCC----ccceeccccCCChhhceeEEEEEEeccc
Confidence            9  47999999999987777655422    345555  45788899999999999886

>PLN02952 phosphoinositide phospholipase C

Probab=99.23  E-value=1.5e-10  Score=112.54  Aligned_cols=118  Identities=19%  Similarity=0.274  Sum_probs=88.1

Q ss_pred             eEEEEEEEEeeCCCCC--CC-C--CCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEE
Q 023810            5 YEVEVTITSAKDLKNV--NW-R--HGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLII   75 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~--~~-~--~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v   75 (277)
                      ++|.|+|+++.+|...  +. .  ....||||+|.+-+    ..+.+|++ +.++.||+|||+|.|.+...  +-..|+|
T Consensus       470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkv-i~nN~nPvWnE~F~F~i~~P--ELAllrf  546 (599)
T PLN02952        470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKI-IEDNWYPAWNEEFSFPLTVP--ELALLRI  546 (599)
T ss_pred             ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeee-ccCCCCcccCCeeEEEEEcC--CccEEEE
Confidence            5799999999887421  10 1  12358999999822    35668998 66679999999999998753  3357999


Q ss_pred             EEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEE
Q 023810           76 DVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAV  133 (277)
Q Consensus        76 ~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~  133 (277)
                      +|||.+. ...++|||++.|||..|..+.       ++++|++..|+..+.+.|-|+|
T Consensus       547 ~V~D~D~-~~~ddfiGq~~lPv~~Lr~Gy-------R~VpL~~~~G~~l~~a~Llv~f  596 (599)
T PLN02952        547 EVREYDM-SEKDDFGGQTCLPVSELRPGI-------RSVPLHDKKGEKLKNVRLLMRF  596 (599)
T ss_pred             EEEecCC-CCCCCeEEEEEcchhHhcCCc-------eeEeCcCCCCCCCCCEEEEEEE
Confidence            9999885 467899999999999987753       4778877777766666666655

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.19  E-value=1.5e-10  Score=116.87  Aligned_cols=123  Identities=21%  Similarity=0.251  Sum_probs=98.1

Q ss_pred             eEEEEEEEEeeCCCCCC-CCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC
Q 023810            5 YEVEVTITSAKDLKNVN-WRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE   83 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~-~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~   83 (277)
                      .+|+|+|.+|++|+..+ ..++..|||+++.+......||++ .+++.||+|||+|.+.|..  + ...|.|+|||.+. 
T Consensus       436 GVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v-~~nt~nPvwNEt~Yi~lns--~-~d~L~LslyD~n~-  510 (1227)
T COG5038         436 GVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRV-KKNTLNPVWNETFYILLNS--F-TDPLNLSLYDFNS-  510 (1227)
T ss_pred             EEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccce-eeccCCccccceEEEEecc--c-CCceeEEEEeccc-
Confidence            68999999999998765 335899999999985566679999 8899999999999999864  3 5689999999775 


Q ss_pred             CCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEec
Q 023810           84 EDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRES  136 (277)
Q Consensus        84 ~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~~  136 (277)
                      ..+|+++|++.++|..|.......   ...++++ ...+..|.|..+++|.+.
T Consensus       511 ~~sd~vvG~~~l~L~~L~~~~~~~---ne~~e~~-~~~k~vGrL~yDl~ffp~  559 (1227)
T COG5038         511 FKSDKVVGSTQLDLALLHQNPVKK---NELYEFL-RNTKNVGRLTYDLRFFPV  559 (1227)
T ss_pred             cCCcceeeeEEechHHhhhccccc---cceeeee-ccCccceEEEEeeeeecc
Confidence            478999999999998877664322   2234443 356678999999999764

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=1.2e-10  Score=110.15  Aligned_cols=92  Identities=23%  Similarity=0.327  Sum_probs=77.7

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE-C-C--CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV-D-P--NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l-d-~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|.|++|++|+..+.. +..|+||++++ + .  ..+.+|.+ .+++.||+|||+|.|.|....+++..|.|+||+.
T Consensus       298 g~ltv~v~kar~L~~~~~~-~~~d~~Vk~~l~~~~~~~~kkkT~~-~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~  375 (421)
T KOG1028|consen  298 GRLTVVVIKARNLKSMDVG-GLSDPYVKVTLLDGDKRLSKKKTSV-KKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDH  375 (421)
T ss_pred             CeEEEEEEEecCCCcccCC-CCCCccEEEEEecCCceeeeeeeec-ccCCCCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence            5799999999999988754 78899999998 2 1  24568888 7899999999999999987777778899999999


Q ss_pred             cCCCCCCceeEEEEEecce
Q 023810           81 GNEEDTKKLIGSAKLKLKD   99 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~   99 (277)
                      +. .+++++||.+.+....
T Consensus       376 d~-~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  376 DT-LGSNDLIGRCILGSDS  393 (421)
T ss_pred             cc-ccccceeeEEEecCCC
Confidence            97 4788899998887654

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.12  E-value=7.1e-10  Score=107.74  Aligned_cols=118  Identities=14%  Similarity=0.259  Sum_probs=87.1

Q ss_pred             eEEEEEEEEeeCCCC----CCC-CCCCCCcEEEEEEC--C--CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEE
Q 023810            5 YEVEVTITSAKDLKN----VNW-RHGPNRPYAVLWVD--P--NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLII   75 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~----~~~-~~g~~dpYv~v~ld--~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v   75 (277)
                      .+|.|+|+++.++..    .+. .....||||+|.+-  +  ..+.+|++ .+++.||+|||+|.|.+...  +-..|+|
T Consensus       469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v-~~n~~nP~Wneef~F~l~vP--ELAllRf  545 (598)
T PLN02230        469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKI-EYDTWTPIWNKEFIFPLAVP--ELALLRV  545 (598)
T ss_pred             cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceec-cCCCCCCccCCeeEEEEEcC--ceeEEEE
Confidence            589999999998631    111 11357999999992  1  34568888 77899999999999998653  3467999


Q ss_pred             EEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCC--ceEEEEEEEE
Q 023810           76 DVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP--HGKVDVKVAV  133 (277)
Q Consensus        76 ~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~--~G~L~l~v~~  133 (277)
                      +|+|.+. ...++|||+..|||..|..+.       +.++|++..|..  .-+|.++++|
T Consensus       546 ~V~d~d~-~~~ddfiGQ~~lPv~~Lr~Gy-------R~V~L~~~~G~~l~~~~Ll~~f~~  597 (598)
T PLN02230        546 EVHEHDI-NEKDDFGGQTCLPVSEIRQGI-------HAVPLFNRKGVKYSSTRLLMRFEF  597 (598)
T ss_pred             EEEECCC-CCCCCEEEEEEcchHHhhCcc-------ceEeccCCCcCCCCCCeeEEEEEe
Confidence            9999885 368899999999999987653       356676765543  3466666665

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.07  E-value=2.6e-09  Score=103.62  Aligned_cols=118  Identities=21%  Similarity=0.280  Sum_probs=85.6

Q ss_pred             eEEEEEEEEeeCCC----CCCC-CCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEE
Q 023810            5 YEVEVTITSAKDLK----NVNW-RHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLII   75 (277)
Q Consensus         5 ~~L~V~v~~A~~L~----~~~~-~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v   75 (277)
                      .+|.|+|+++.++.    .... .....||||+|.+.+    ..+.+|++ +.++-||+|||+|.|.+...  +-..|+|
T Consensus       452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~-v~nn~nP~W~e~f~F~i~~P--eLAllRf  528 (581)
T PLN02222        452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKT-LEDNWIPAWDEVFEFPLTVP--ELALLRL  528 (581)
T ss_pred             ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEe-cCCCCCcccCCeeEEEEEcC--ceeEEEE
Confidence            47999999998742    2111 113578999999932    34678998 56668999999999987653  3367999


Q ss_pred             EEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCC--ceEEEEEEEE
Q 023810           76 DVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP--HGKVDVKVAV  133 (277)
Q Consensus        76 ~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~--~G~L~l~v~~  133 (277)
                      +|+|.+. ...++|||+..|||..|..+.       +.++|++..+..  .-+|.+.+.|
T Consensus       529 ~V~d~D~-~~~ddfigq~~lPv~~Lr~Gy-------R~V~L~~~~g~~l~~a~Lfv~~~~  580 (581)
T PLN02222        529 EVHEYDM-SEKDDFGGQTCLPVWELSQGI-------RAFPLHSRKGEKYKSVKLLVKVEF  580 (581)
T ss_pred             EEEECCC-CCCCcEEEEEEcchhhhhCcc-------ceEEccCCCcCCCCCeeEEEEEEe
Confidence            9999875 367899999999999987653       456777665543  4566666665

>PLN02228 Phosphoinositide phospholipase C

Probab=99.06  E-value=2.6e-09  Score=103.37  Aligned_cols=121  Identities=15%  Similarity=0.272  Sum_probs=89.8

Q ss_pred             eEEEEEEEEeeCCCC----CCC-CCCCCCcEEEEEECC----CCeEEeeecCCCCCCCcc-ceeEEEecCCCCCCCceEE
Q 023810            5 YEVEVTITSAKDLKN----VNW-RHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYW-DETLAIPLPGPVDDDTTLI   74 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~----~~~-~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~W-nE~f~f~v~~~~l~~~~L~   74 (277)
                      .+|+|+|+++..|..    .+. .....|+||+|.+.+    ..+.+|++ .+++.||+| ||+|.|.+...  +-..|+
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~-~~n~~nP~W~~e~f~F~~~~p--ELA~lR  507 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTET-AVDQWFPIWGNDEFLFQLRVP--ELALLW  507 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeec-cCCCCCceECCCeEEEEEEcC--ceeEEE
Confidence            369999999998721    111 113478999999832    34578998 566789999 99999998653  336799


Q ss_pred             EEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCC--ceEEEEEEEEEec
Q 023810           75 IDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP--HGKVDVKVAVRES  136 (277)
Q Consensus        75 v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~--~G~L~l~v~~~~~  136 (277)
                      |+|+|.+. ...++|||++.|||..|..+       .+.++|.+..|..  ..+|.|++++.+.
T Consensus       508 f~V~D~d~-~~~d~figq~~lPv~~Lr~G-------YR~VpL~~~~G~~l~~atLfv~~~~~~~  563 (567)
T PLN02228        508 FKVQDYDN-DTQNDFAGQTCLPLPELKSG-------VRAVRLHDRAGKAYKNTRLLVSFALDPP  563 (567)
T ss_pred             EEEEeCCC-CCCCCEEEEEEcchhHhhCC-------eeEEEccCCCCCCCCCeEEEEEEEEcCc
Confidence            99999875 36789999999999998664       2456777766653  5778888888654

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.06  E-value=5.8e-10  Score=105.55  Aligned_cols=125  Identities=16%  Similarity=0.209  Sum_probs=104.5

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccc-eeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWD-ETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~Wn-E~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      .|-|+|+.+|.|+..+..+...|.||.+++ .+..++|.| ..+++||.|| +.|+|.|+..+++++.|-|.+.|.+. .
T Consensus         4 kl~vki~a~r~lpvmdkasd~tdafveik~-~n~t~ktdv-f~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt-y   80 (1169)
T KOG1031|consen    4 KLGVKIKAARHLPVMDKASDLTDAFVEIKF-ANTTFKTDV-FLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT-Y   80 (1169)
T ss_pred             cceeEEEeccCCcccccccccchheeEEEe-cccceehhh-hhhhcCCcccccceEEecChhhhccCCeeEEEecccc-c
Confidence            688999999999988866567899999999 588899999 6679999999 77999999888999999999999996 4


Q ss_pred             CCCceeEEEEEecceeccccCC------CceeeEEEEeecCCCCCceEEEEEEEE
Q 023810           85 DTKKLIGSAKLKLKDVINDVGL------GERASLTLKLKRPSGRPHGKVDVKVAV  133 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~~~~~------~~~~~~~~~L~~~sg~~~G~L~l~v~~  133 (277)
                      +-++-||++.|.|.-|......      +.....|+++.+.-...+|+|+|-|++
T Consensus        81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkv  135 (1169)
T KOG1031|consen   81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKV  135 (1169)
T ss_pred             ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEE
Confidence            7788999999999876543221      233578999988777789999988876

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=99.01  E-value=2.9e-09  Score=104.00  Aligned_cols=120  Identities=18%  Similarity=0.224  Sum_probs=90.5

Q ss_pred             EEEEEEEEeeCCCC-CCC--CCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEE
Q 023810            6 EVEVTITSAKDLKN-VNW--RHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVV   78 (277)
Q Consensus         6 ~L~V~v~~A~~L~~-~~~--~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~   78 (277)
                      +|.|+|+++.++.. .+.  +....||||.|++-+    ..+.+|++..+++-||.|+|+|.|.|+..+  -.-|+|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPE--LAliRF~V~  694 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPE--LALIRFEVH  694 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccc--eeEEEEEEE
Confidence            79999999996543 221  224579999999832    345789865889999999999999987643  357999999


Q ss_pred             EccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCC--CceEEEEEEEEEe
Q 023810           79 HAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGR--PHGKVDVKVAVRE  135 (277)
Q Consensus        79 d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~--~~G~L~l~v~~~~  135 (277)
                      |.+. .+.|+|+|+..+|+..|..+.       +.++|.+..|.  ..-+|.|++++.+
T Consensus       695 d~d~-~~~ddF~GQ~tlP~~~L~~Gy-------RhVpL~~~~G~~~~~asLfv~i~~~~  745 (746)
T KOG0169|consen  695 DYDY-IGKDDFIGQTTLPVSELRQGY-------RHVPLLSREGEALSSASLFVRIAIVE  745 (746)
T ss_pred             ecCC-CCcccccceeeccHHHhhCce-------eeeeecCCCCccccceeEEEEEEEec
Confidence            9996 467999999999999987652       34566555554  4677777777754

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.99  E-value=1.3e-09  Score=110.36  Aligned_cols=123  Identities=18%  Similarity=0.273  Sum_probs=95.0

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      ..|+|.+.++.+|+..+.+ +.+||||++.+..+..++|++ +++++||+|||.|.+.|.+.  ....|+|.|+|++. .
T Consensus      1040 G~l~I~~~~~~nl~~~d~n-g~sDpfv~~~ln~k~vyktkv-~KktlNPvwNEe~~i~v~~r--~~D~~~i~v~Dwd~-~ 1114 (1227)
T COG5038        1040 GYLTIMLRSGENLPSSDEN-GYSDPFVKLFLNEKSVYKTKV-VKKTLNPVWNEEFTIEVLNR--VKDVLTINVNDWDS-G 1114 (1227)
T ss_pred             CcEEEEEeccCCCcccccC-CCCCceEEEEecceecccccc-hhccCCCCccccceEeeecc--ccceEEEEEeeccc-C
Confidence            5689999999999998864 889999999996566789999 78899999999999999762  13468899999885 5


Q ss_pred             CCCceeEEEEEecceeccccCCCceeeEEEEeecC-CCCCceEEEEEEEEEec
Q 023810           85 DTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP-SGRPHGKVDVKVAVRES  136 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~-sg~~~G~L~l~v~~~~~  136 (277)
                      .++++||.+.|+|..|..+...    .....|..+ .....|.++....|+..
T Consensus      1115 ~knd~lg~~~idL~~l~~~~~~----n~~i~ldgk~~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038        1115 EKNDLLGTAEIDLSKLEPGGTT----NSNIPLDGKTFIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred             CCccccccccccHhhcCcCCcc----ceeeeccCcceEecccEeecceecchh
Confidence            7889999999999988765422    222333222 23556777777777654

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.99  E-value=2.8e-09  Score=104.17  Aligned_cols=119  Identities=19%  Similarity=0.273  Sum_probs=88.3

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE-----CCCCeEEeeecCCCCCCCccc-eeEEEecCCCCCCCceEEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV-----DPNKKCSTKVDDEGDTCPYWD-ETLAIPLPGPVDDDTTLIIDVV   78 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l-----d~~~~~~T~v~~~~~~nP~Wn-E~f~f~v~~~~l~~~~L~v~V~   78 (277)
                      -+|.|.|+.||.|...+ + +...|||+|.+     |.+...+|.| ..+++||+|| |+|+|.|.+.  +-..|+|.|+
T Consensus      1065 ~~lsv~vigaRHL~k~g-r-~i~cPfVevEiiGa~~Dt~~~~t~~V-~dNGlnPiWn~e~ftFeI~nP--e~A~lRF~V~ 1139 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-R-SIACPFVEVEIIGAEYDTNKFKTTVV-NDNGLNPIWNPEKFTFEIYNP--EFAFLRFVVY 1139 (1267)
T ss_pred             eEEEEEEeeccccccCC-C-CccCCcEEEEEeccccCCCceEEEEe-ccCCCCCCCCCcceEEEeeCC--ceEEEEEEEe
Confidence            36889999999998655 2 56779999998     4334445555 8999999999 9999999873  4578999999


Q ss_pred             EccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecC-CC-CCceEEEEEEEEEec
Q 023810           79 HAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP-SG-RPHGKVDVKVAVRES  136 (277)
Q Consensus        79 d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~-sg-~~~G~L~l~v~~~~~  136 (277)
                      +.+. ++...||+++.+||..|..+       .++++|++. +. -.-.+|.|.+...+.
T Consensus      1140 eeDm-fs~~~FiaqA~yPv~~ik~G-------fRsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1140 EEDM-FSDPNFLAQATYPVKAIKSG-------FRSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred             cccc-cCCcceeeeeecchhhhhcc-------ceeeecccCchhhhhhhhheeeeEeccc
Confidence            9996 57778999999999887654       355666553 11 123455666666543

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.96  E-value=1.6e-10  Score=111.54  Aligned_cols=122  Identities=21%  Similarity=0.381  Sum_probs=92.2

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----C--------------------------eEEeeecCCCCCCCcc
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----K--------------------------KCSTKVDDEGDTCPYW   55 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----~--------------------------~~~T~v~~~~~~nP~W   55 (277)
                      .|.|.+..|++|...+. +|.+|||+.+.+-+.    .                          ...|.| ++.++||.|
T Consensus       115 ~l~is~~~ak~l~akd~-ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsv-k~~TLnPkW  192 (1103)
T KOG1328|consen  115 LLNISLLEAKDLIAKDV-NGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSV-KKKTLNPKW  192 (1103)
T ss_pred             HHHHHHHHhcCccccCC-CCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccc-ccccCCcch
Confidence            35577788999988775 489999998766110    0                          124666 678999999


Q ss_pred             ceeEEEecCCCCCCCceEEEEEEEccCCC--------------------------------C---CCceeEEEEEeccee
Q 023810           56 DETLAIPLPGPVDDDTTLIIDVVHAGNEE--------------------------------D---TKKLIGSAKLKLKDV  100 (277)
Q Consensus        56 nE~f~f~v~~~~l~~~~L~v~V~d~~~~~--------------------------------~---~d~~iG~~~v~L~~l  100 (277)
                      +|+|.|+|..  .....+++.|||++...                                +   .|+|||.++|||.+|
T Consensus       193 ~EkF~F~IeD--v~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei  270 (1103)
T KOG1328|consen  193 SEKFQFTIED--VQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI  270 (1103)
T ss_pred             hhheeeehhc--cccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence            9999999976  56778999999975320                                2   379999999999998


Q ss_pred             ccccCCCceeeEEEEe--ecCCCCCceEEEEEEEEEec
Q 023810          101 INDVGLGERASLTLKL--KRPSGRPHGKVDVKVAVRES  136 (277)
Q Consensus       101 ~~~~~~~~~~~~~~~L--~~~sg~~~G~L~l~v~~~~~  136 (277)
                      ....     ...||.|  |+...+++|.++|++++...
T Consensus       271 P~~G-----ld~WFkLepRS~~S~VqG~~~LklwLsT~  303 (1103)
T KOG1328|consen  271 PPDG-----LDQWFKLEPRSDKSKVQGQVKLKLWLSTK  303 (1103)
T ss_pred             Ccch-----HHHHhccCcccccccccceEEEEEEEeee
Confidence            7653     2456666  44467889999999999765

>PLN02352 phospholipase D epsilon

Probab=98.82  E-value=4.1e-08  Score=97.40  Aligned_cols=117  Identities=17%  Similarity=0.221  Sum_probs=87.1

Q ss_pred             eEEEEEEEEeeCCCCC----CCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNV----NWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~----~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      .+|++||.+|+-+...    .......++||.+.++.....||    ++..||+|||+|.+.|...  -+..|.|.|.|.
T Consensus        10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt----~~~~~p~w~e~f~i~~ah~--~~~~~~f~vk~~   83 (758)
T PLN02352         10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT----SHEYDRVWNQTFQILCAHP--LDSTITITLKTK   83 (758)
T ss_pred             cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC----CCCCCCccccceeEEeeee--cCCcEEEEEecC
Confidence            5799999999854321    11101239999999976666788    3456999999999999762  235799999873


Q ss_pred             cCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCC-c-eEEEEEEEEEec
Q 023810           81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP-H-GKVDVKVAVRES  136 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~-~-G~L~l~v~~~~~  136 (277)
                            ..+||.+.||+.+|++..   +....||+|...++++ + -+|+|+++|.+.
T Consensus        84 ------~~~ig~~~~p~~~~~~g~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  132 (758)
T PLN02352         84 ------CSILGRFHIQAHQIVTEA---SFINGFFPLIMENGKPNPELKLRFMLWFRPA  132 (758)
T ss_pred             ------CeEEEEEEEEHHHhhCCC---cccceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence                  368999999999998752   2367889987766654 3 489999999886

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=98.66  E-value=1.3e-08  Score=93.11  Aligned_cols=125  Identities=22%  Similarity=0.242  Sum_probs=94.5

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEE----CCCCeEEeeecCCCCCCCccceeEEEecCCC---------CCCCce
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWV----DPNKKCSTKVDDEGDTCPYWDETLAIPLPGP---------VDDDTT   72 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l----d~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~---------~l~~~~   72 (277)
                      +|+++|+++.++...+. ....|.|+++.+    |...+.+|.| ++++.+|.|+|.|.+++...         .+.+..
T Consensus       368 elel~ivrg~~~pvp~g-p~hld~fvr~efpl~nD~~qk~kt~v-ik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g  445 (523)
T KOG3837|consen  368 ELELAIVRGQKNPVPGG-PMHLDQFVRLEFPLENDSRQKLKTDV-IKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG  445 (523)
T ss_pred             HhHHHHhhcccCCCCCC-chhHHhhhcccccccccccccCccce-eeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence            57788888888765442 134577888876    3456678888 88999999999999998761         223456


Q ss_pred             EEEEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEec
Q 023810           73 LIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRES  136 (277)
Q Consensus        73 L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~~  136 (277)
                      +.|+||++..+..+|+|+|.++|.|.-|.+..    .....|.|++-..-..|+|.++|+++.+
T Consensus       446 ~kfeifhkggf~rSdkl~gt~nikle~Len~c----ei~e~~~l~DGRK~vGGkLevKvRiR~P  505 (523)
T KOG3837|consen  446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMC----EICEYLPLKDGRKAVGGKLEVKVRIRQP  505 (523)
T ss_pred             eeEEEeeccccccccceeceeeeeehhhhccc----chhhceeccccccccCCeeEEEEEEecc
Confidence            89999999988889999999999998776542    2344566765555568999999999875

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.63  E-value=1.4e-08  Score=98.31  Aligned_cols=94  Identities=26%  Similarity=0.319  Sum_probs=78.9

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCC------eEEeeecCCCCCCCccceeEEEecCCCCCC--CceEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNK------KCSTKVDDEGDTCPYWDETLAIPLPGPVDD--DTTLIID   76 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~------~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~--~~~L~v~   76 (277)
                      -+|.|.|+.|+++...+- ||-+||||++.+.+..      .++|+| ..+++||+|+|+|.|.|+.+...  ...|.|+
T Consensus       947 q~L~veVlhA~diipLD~-NGlSDPFVviEl~P~~~fp~v~~q~T~V-~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen  947 QTLVVEVLHAKDIIPLDS-NGLSDPFVVIELIPKFRFPAVPVQKTKV-VSRTLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred             cchhhhhhccccccccCC-CCCCCCeEEEEeccccccccchhhhhhh-hhccccchhhhheeeecCccccccccceEEEE
Confidence            468899999999988774 5999999999996542      469999 78899999999999999886332  4569999


Q ss_pred             EEEccCCCCCCceeEEEEEecceec
Q 023810           77 VVHAGNEEDTKKLIGSAKLKLKDVI  101 (277)
Q Consensus        77 V~d~~~~~~~d~~iG~~~v~L~~l~  101 (277)
                      |+|++- ...++|-|++-+.|.++.
T Consensus      1025 VMDHD~-L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1025 VMDHDY-LRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             eeccce-ecccccchHHHHhhCCCC
Confidence            999996 579999999999888764

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=3.2e-08  Score=88.36  Aligned_cols=128  Identities=20%  Similarity=0.247  Sum_probs=90.5

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEe-cCCCCCCCceEEEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIP-LPGPVDDDTTLIIDVVH   79 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~-v~~~~l~~~~L~v~V~d   79 (277)
                      ..+.++|..|++|+..++ ++..|+|+.+.+.+    ..+.+|++ ..++.||.|||+.... |..+......+++.|++
T Consensus        93 ~~~~~tl~~a~~lk~~~~-~~~~d~~~~~~llpga~kl~slr~~t-~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcd  170 (362)
T KOG1013|consen   93 RMLDTTLDRAKGLKPMDI-NGLADPYVKLHLLPGAGKLNSLRTKT-TRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCD  170 (362)
T ss_pred             hhcceeechhcccchhhh-hhhcchHHhhhcccchhhhhhhhHHh-hccCcCcceeccceecccccchhhhhhhheeecc
Confidence            378999999999999885 49999999999843    24578888 7889999999887655 33334456778899999


Q ss_pred             ccCCCCCCceeEEEEEecceeccccCCCceeeEEEEee--c---CCCCCceEEEEEEEEEe
Q 023810           80 AGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLK--R---PSGRPHGKVDVKVAVRE  135 (277)
Q Consensus        80 ~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~--~---~sg~~~G~L~l~v~~~~  135 (277)
                      +..+ .+++++|+.+|.|..|.......-...+...|.  +   ..-+.+|+|.+++.|..
T Consensus       171 n~~~-~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s  230 (362)
T KOG1013|consen  171 NDKK-THNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSS  230 (362)
T ss_pred             Cccc-ccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCc
Confidence            8874 688999999999888765543211111122221  1   12256788888877744

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.38  E-value=4.9e-07  Score=87.70  Aligned_cols=120  Identities=18%  Similarity=0.232  Sum_probs=82.6

Q ss_pred             EEEEeeCCCCCCCCCCCCCcEEEEEECC---CCeEEeeecCCCCCCCccceeEEEecCCC-----------CC--CCceE
Q 023810           10 TITSAKDLKNVNWRHGPNRPYAVLWVDP---NKKCSTKVDDEGDTCPYWDETLAIPLPGP-----------VD--DDTTL   73 (277)
Q Consensus        10 ~v~~A~~L~~~~~~~g~~dpYv~v~ld~---~~~~~T~v~~~~~~nP~WnE~f~f~v~~~-----------~l--~~~~L   73 (277)
                      .+++++++-...  ++.+|||+++..-+   ....+|++ ++.+.||.|||.|.|.+...           +.  .-..|
T Consensus       136 ~~L~~r~~~P~~--~~~~dp~~~v~~~g~~~~~~~~T~~-~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~i  212 (800)
T KOG2059|consen  136 HVLKTRQGLPII--NGQCDPFARVTLCGPSKLKEKKTKV-KKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEI  212 (800)
T ss_pred             hhhhhcccCcee--CCCCCcceEEeecccchhhccccce-eeeccCcchhhheeeeeccccccccchhcCcccCCceeeE
Confidence            334445444332  36799999988732   23358888 77899999999999998763           00  12458


Q ss_pred             EEEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeec-C------CCCCceEEEEEEEEEec
Q 023810           74 IIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR-P------SGRPHGKVDVKVAVRES  136 (277)
Q Consensus        74 ~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~-~------sg~~~G~L~l~v~~~~~  136 (277)
                      .|++|+.......+.|+|+++|++..+.....    ...||.|.. +      .+..-|.|++.+.+.+-
T Consensus       213 rv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~----p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D  278 (800)
T KOG2059|consen  213 RVDLWNDLNLVINDVFLGEVRVPVDVLRQKSS----PAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTED  278 (800)
T ss_pred             EEeeccchhhhhhhhhceeEEeehhhhhhccC----ccceEEEecCCCcccCCCCCCccceeeeEEeeec
Confidence            89999955445568999999999988763322    245666642 1      23457999999999875

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.35  E-value=8.4e-07  Score=69.58  Aligned_cols=105  Identities=17%  Similarity=0.313  Sum_probs=74.0

Q ss_pred             EEEEEEEeeCCCCCC---------C---CCCCCCcEEEEEE---CCCCeEEeeecCCCCCCCccceeEEEecC-------
Q 023810            7 VEVTITSAKDLKNVN---------W---RHGPNRPYAVLWV---DPNKKCSTKVDDEGDTCPYWDETLAIPLP-------   64 (277)
Q Consensus         7 L~V~v~~A~~L~~~~---------~---~~g~~dpYv~v~l---d~~~~~~T~v~~~~~~nP~WnE~f~f~v~-------   64 (277)
                      |.|.|+.|.+|+..-         +   ..--.|.|+++.+   ...++++|++ +.++-.|.||..+.|.++       
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~Trt-VArSFcPeF~Hh~Efpc~lv~~~~~   79 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRT-VARSFCPEFNHHVEFPCNLVVQRNS   79 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccc-hhhhcCCCccceEEEecccEEEcCC
Confidence            467788888875320         0   0123689999986   3456778988 788999999999999887       


Q ss_pred             -C-----CCCCCceEEEEEEEccCC---------CCCCceeEEEEEecceeccccCCCceeeEEEE
Q 023810           65 -G-----PVDDDTTLIIDVVHAGNE---------EDTKKLIGSAKLKLKDVINDVGLGERASLTLK  115 (277)
Q Consensus        65 -~-----~~l~~~~L~v~V~d~~~~---------~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~  115 (277)
                       +     +.|+...|.|+|||+...         ...|=+||.+.||+.+|+.+.. |  ...||+
T Consensus        80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rs-G--itGW~p  142 (143)
T cd08683          80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRS-G--ITGWYP  142 (143)
T ss_pred             CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhccc-C--cccccc
Confidence             2     135667899999997532         1234489999999999987632 2  345655

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.32  E-value=1.5e-06  Score=83.83  Aligned_cols=106  Identities=25%  Similarity=0.323  Sum_probs=82.6

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE------CCCCeEEeeecCCCCCCCccceeEEEecCCC-CCCCceEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV------DPNKKCSTKVDDEGDTCPYWDETLAIPLPGP-VDDDTTLIIDV   77 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l------d~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~-~l~~~~L~v~V   77 (277)
                      +.++|.|+.|.+|+-..  .+.-.||+.+.+      |.++++.|++ ..++-.|.+||+|.|.+.+. ..+.-.|.|+|
T Consensus      1125 hkvtvkvvaandlkwqt--sgmFrPFVEV~ivGP~lsDKKRK~~TKt-KsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~V 1201 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQT--SGMFRPFVEVHIVGPHLSDKKRKFSTKT-KSNNWAPKYNETFHFFLGNEGGPEHYELQFCV 1201 (1283)
T ss_pred             ceEEEEEEecccccchh--ccccccceEEEEecCcccchhhhccccc-cCCCcCcccCceeEEEeccCCCCceEEEEEee
Confidence            46889999999997432  266789999988      3356678888 77888899999999998764 34456799999


Q ss_pred             EEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeec
Q 023810           78 VHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR  118 (277)
Q Consensus        78 ~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~  118 (277)
                      .|.. +...|+.||.+.+.|+++..+..    .-.|++|-+
T Consensus      1202 KDYC-FAReDRvvGl~VlqL~~va~kGS----~a~W~pLgr 1237 (1283)
T KOG1011|consen 1202 KDYC-FAREDRVVGLAVLQLRSVADKGS----CACWVPLGR 1237 (1283)
T ss_pred             hhhe-eecccceeeeeeeehhhHhhcCc----eeEeeeccc
Confidence            9977 45678899999999999988743    346777743

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=98.31  E-value=1e-06  Score=64.57  Aligned_cols=93  Identities=17%  Similarity=0.176  Sum_probs=69.1

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCcEEE--EEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            7 VEVTITSAKDLKNVNWRHGPNRPYAV--LWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         7 L~V~v~~A~~L~~~~~~~g~~dpYv~--v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      +-|||+.|+||.-.+.......-|++  +.+......+|.+ ..+..||+|+|+|.|.+..-.+.+..|.|.|+..-   
T Consensus         1 iwitv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~-rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~---   76 (103)
T cd08684           1 IWITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSA-KEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQT---   76 (103)
T ss_pred             CEEEEEEecccccccccCcCCeeEEEEEEecCCCccccchh-hcCCCChhHHHHHHHHHHHhhccceEEEEEeeccC---
Confidence            35899999999644322122334665  4444445678888 78899999999999998876677888999999843   


Q ss_pred             CCCceeEEEEEecceeccc
Q 023810           85 DTKKLIGSAKLKLKDVIND  103 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~~  103 (277)
                      .+++.||.+.+.|+++-.+
T Consensus        77 ~RKe~iG~~sL~l~s~gee   95 (103)
T cd08684          77 PRKRTIGECSLSLRTLSTQ   95 (103)
T ss_pred             CccceeeEEEeecccCCHH
Confidence            4778899999999886543

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.18  E-value=1.4e-06  Score=88.44  Aligned_cols=106  Identities=20%  Similarity=0.218  Sum_probs=82.3

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEe-cCCCCCCCceEEEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIP-LPGPVDDDTTLIIDVVH   79 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~-v~~~~l~~~~L~v~V~d   79 (277)
                      .+|.|-|..+|+|....- ....||||++++.+    ..|++|+| ..++.||.|||.+..+ +..+.+..+.|-+.||.
T Consensus      1524 ~~LtImV~H~K~L~~Lqd-g~~P~pyVK~YLlPdp~k~sKRKTKv-vrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1524 GTLTIMVMHAKGLALLQD-GQDPDPYVKTYLLPDPRKTSKRKTKV-VRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred             ceEEEEhhhhcccccccC-CCCCCcceeEEecCCchHhhhhhhcc-ccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence            578999999999954321 25789999999933    24679999 7889999999999887 44444566889999999


Q ss_pred             ccCCCCCCceeEEEEEecceeccccCCCceeeEEEEee
Q 023810           80 AGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLK  117 (277)
Q Consensus        80 ~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~  117 (277)
                      ... ...+.|+|.+.|+|.++....    ....||+|.
T Consensus      1602 ~~~-~~en~~lg~v~i~L~~~~l~k----E~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NGG-LLENVFLGGVNIPLLKVDLLK----ESVGWYNLG 1634 (1639)
T ss_pred             ccc-eeeeeeeeeeecchhhcchhh----hhcceeecc
Confidence            886 468899999999999875542    234788873

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=9.3e-06  Score=72.88  Aligned_cols=89  Identities=19%  Similarity=0.187  Sum_probs=73.7

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      .-|.|+++.|..|...+. ++-+||||.+++++    ..+.+|.+ .+++.||.||+.|.|.+....|...++.|.||+.
T Consensus       233 ~~l~vt~iRc~~l~ssDs-ng~sDpyvS~~l~pdv~~~fkkKt~~-~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~  310 (362)
T KOG1013|consen  233 PGLIVTIIRCSHLASSDS-NGYSDPYVSQRLSPDVGKKFKKKTQQ-KKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY  310 (362)
T ss_pred             CceEEEEEEeeeeecccc-CCCCCccceeecCCCcchhhcccCcc-hhccCCccccccccccCCccchhcceEEEeeccc
Confidence            358899999999988774 48999999999943    34568888 7889999999999999998777777899999998


Q ss_pred             cCCCCCCceeEEEEEe
Q 023810           81 GNEEDTKKLIGSAKLK   96 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~   96 (277)
                      +. ....+++|-+..-
T Consensus       311 ~~-G~s~d~~GG~~~g  325 (362)
T KOG1013|consen  311 DI-GKSNDSIGGSMLG  325 (362)
T ss_pred             CC-CcCccCCCccccc
Confidence            85 5578888875543

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=97.64  E-value=0.00025  Score=70.83  Aligned_cols=100  Identities=22%  Similarity=0.295  Sum_probs=72.9

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE-----CC-CCeEEeeecCCCCCCCcccee-EEEe-cCCCCCCCceEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV-----DP-NKKCSTKVDDEGDTCPYWDET-LAIP-LPGPVDDDTTLIID   76 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l-----d~-~~~~~T~v~~~~~~nP~WnE~-f~f~-v~~~~l~~~~L~v~   76 (277)
                      .+|.|+|+++.-|..+.     ...||.|.+     |. .+.+||++...++.||+|||. |.|. |-..+  -..|+|.
T Consensus       703 ~t~sV~VISgqFLSdrk-----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpe--LA~lRia  775 (1189)
T KOG1265|consen  703 ATLSVTVISGQFLSDRK-----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPE--LASLRIA  775 (1189)
T ss_pred             eeEEEEEEeeeeccccc-----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccc--hhheeee
Confidence            68999999999987544     358999887     21 245788887889999999955 7776 32212  3579999


Q ss_pred             EEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCC
Q 023810           77 VVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP  123 (277)
Q Consensus        77 V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~  123 (277)
                      ||+++.     +|||.-.+||..|..+.     +.  +.||+++..+
T Consensus       776 vyeEgg-----K~ig~RIlpvd~l~~GY-----rh--v~LRse~Nqp  810 (1189)
T KOG1265|consen  776 VYEEGG-----KFIGQRILPVDGLNAGY-----RH--VCLRSESNQP  810 (1189)
T ss_pred             eeccCC-----ceeeeeccchhcccCcc-----ee--EEecCCCCCc
Confidence            998874     68999999999876653     22  3466665544

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.64  E-value=3.9e-05  Score=77.27  Aligned_cols=90  Identities=19%  Similarity=0.278  Sum_probs=71.5

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCe-EEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKK-CSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE   83 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~-~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~   83 (277)
                      ..++|.|++|.+|...+.. +..|||+++.+.++.. -++.. +.+++||+|++-|.+.+.-.  ....|+|+||+.+. 
T Consensus       613 ~LvrVyvv~A~~L~p~D~n-g~adpYv~l~lGk~~~~d~~~y-ip~tlnPVfgkmfel~~~lp--~ek~l~v~vyd~D~-  687 (1105)
T KOG1326|consen  613 CLVRVYVVEAFSLQPSDGN-GDADPYVKLLLGKKRTLDRAHY-IPNTLNPVFGKMFELECLLP--FEKDLIVEVYDHDL-  687 (1105)
T ss_pred             eeEEEEEEEeeeccccCCC-CCcCceeeeeeccchhhhhhhc-CcCCCCcHHHHHHHhhcccc--hhhcceeEEEEeec-
Confidence            3578999999999988854 9999999999953322 24444 78999999999988876542  24568999999996 


Q ss_pred             CCCCceeEEEEEecce
Q 023810           84 EDTKKLIGSAKLKLKD   99 (277)
Q Consensus        84 ~~~d~~iG~~~v~L~~   99 (277)
                      ...++.||+.+|.|++
T Consensus       688 ~~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  688 EAQDEKIGETTIDLEN  703 (1105)
T ss_pred             ccccchhhceehhhhh
Confidence            5788899999999876

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=97.56  E-value=0.0024  Score=51.21  Aligned_cols=123  Identities=15%  Similarity=0.279  Sum_probs=78.9

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCC--eEEeeecCCCCCCCccceeEEEecCCC------CCCCceEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNK--KCSTKVDDEGDTCPYWDETLAIPLPGP------VDDDTTLIID   76 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~--~~~T~v~~~~~~nP~WnE~f~f~v~~~------~l~~~~L~v~   76 (277)
                      ..+.|+|.+..++...     ....++++......  ..+|......+..-.|||.|.+.++-.      .++...|.|.
T Consensus         7 f~~~l~i~~l~~~p~~-----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~   81 (143)
T PF10358_consen    7 FQFDLTIHELENLPSS-----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS   81 (143)
T ss_pred             EEEEEEEEEeECcCCC-----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence            4678889998888752     22345555443232  345544344556789999998875331      3566678999


Q ss_pred             EEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEec
Q 023810           77 VVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRES  136 (277)
Q Consensus        77 V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~~  136 (277)
                      |+..... +.+..||.+.|.|.++....  .+.....+.|.. +.....+|+|+|++..-
T Consensus        82 v~~~~~~-~~k~~lG~~~inLaey~~~~--~~~~~~~~~l~~-~~~~~a~L~isi~~~~~  137 (143)
T PF10358_consen   82 VFEVDGS-GKKKVLGKVSINLAEYANED--EEPITVRLLLKK-CKKSNATLSISISLSEL  137 (143)
T ss_pred             EEEecCC-CccceEEEEEEEHHHhhCcC--CCcEEEEEeCcc-CCCCCcEEEEEEEEEEC
Confidence            9887421 23358999999999998753  123455666644 34557888888888654

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>smart00157 PRP Major prion protein

Probab=97.48  E-value=0.00026  Score=58.56  Aligned_cols=48  Identities=25%  Similarity=0.328  Sum_probs=39.1

Q ss_pred             cccccCCCchhHHHHHHHHHHHhHhhhhhhhhhhhhhhhHHHHhhhhc
Q 023810          221 KKKSKFGGMGTGLAVGAVGGILGGLALAEGVDALEDHIADEAAEKVED  268 (277)
Q Consensus       221 ~~~~~~~g~g~g~~~g~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~  268 (277)
                      +.+..||.|...+++|+++|+++|.+|+.+|....-++.++.||++=+
T Consensus        81 KP~~~~k~~~~aAgagAv~g~~~GY~lG~~m~rp~~~F~np~EeryYn  128 (217)
T smart00157       81 KPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGNDYEDRYYR  128 (217)
T ss_pred             CCCcchHHHHHhhhcchhhhhccccccccccCCCccccCChHHHHHHH
Confidence            444556678778889999999999999999998888888888887533

The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.

>PLN02964 phosphatidylserine decarboxylase

Probab=97.48  E-value=0.00019  Score=71.06  Aligned_cols=85  Identities=16%  Similarity=0.234  Sum_probs=66.3

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCc-EEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRP-YAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dp-Yv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      .+.|+|++|+    ..    ..|+ ++.+++ +.+.+||.+ .+++.||+||+...|.|..+..  ...+|.|||.++ +
T Consensus        55 ~~~~~~~~~~----~~----~~~~~~~~~~~-g~~~f~t~~-~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~  121 (644)
T PLN02964         55 IALLTLVGAE----MK----FKDKWLACVSF-GEQTFRTET-SDSTDKPVWNSEKKLLLEKNGP--HLARISVFETNR-L  121 (644)
T ss_pred             eEEEEeehhh----hc----cCCcEEEEEEe-cceeeeecc-ccccCCcccchhhceEeccCCc--ceEEEEEEecCC-C
Confidence            5678888886    22    2255 455666 588899999 7889999999999999877543  346999999997 4


Q ss_pred             CCCceeEEEEEecceeccc
Q 023810           85 DTKKLIGSAKLKLKDVIND  103 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~~  103 (277)
                      +.+++++.++++|.++..+
T Consensus       122 s~n~lv~~~e~~~t~f~~k  140 (644)
T PLN02964        122 SKNTLVGYCELDLFDFVTQ  140 (644)
T ss_pred             CHHHhhhheeecHhhccHH
Confidence            7899999999988776655

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=97.42  E-value=0.00064  Score=67.28  Aligned_cols=18  Identities=6%  Similarity=0.054  Sum_probs=12.3

Q ss_pred             CCCCCCccceeEEEecCC
Q 023810           48 EGDTCPYWDETLAIPLPG   65 (277)
Q Consensus        48 ~~~~nP~WnE~f~f~v~~   65 (277)
                      .++.+|.|.-.|+|+|+-
T Consensus       439 r~~~DPdf~yr~~l~id~  456 (1102)
T KOG1924|consen  439 RTGMDPDFKYRFRLDIDL  456 (1102)
T ss_pred             cCCCCCCcchhhcccCcH
Confidence            456788887777776643

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=97.35  E-value=0.0014  Score=65.03  Aligned_cols=10  Identities=20%  Similarity=0.581  Sum_probs=5.0

Q ss_pred             EEEecceecc
Q 023810           93 AKLKLKDVIN  102 (277)
Q Consensus        93 ~~v~L~~l~~  102 (277)
                      ..|++..|++
T Consensus       452 l~id~~~liD  461 (1102)
T KOG1924|consen  452 LDIDLTELID  461 (1102)
T ss_pred             ccCcHHHHHH
Confidence            3455555544

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=97.30  E-value=0.0017  Score=48.03  Aligned_cols=86  Identities=22%  Similarity=0.278  Sum_probs=62.0

Q ss_pred             CCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCCCceeEEEEEecceecccc
Q 023810           25 GPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDV  104 (277)
Q Consensus        25 g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~  104 (277)
                      |+.+..+++.+|.+....|.-  +.-.+-.|+++|.|+++.    .+.|.|.||-++-    ..+.|...+.|++...+ 
T Consensus         7 ~~~eV~avLklDn~~VgqT~W--k~~s~q~WDQ~Fti~LdR----sRELEI~VywrD~----RslCav~~lrLEd~~~~-   75 (98)
T cd08687           7 GCSEVSAVLKLDNTVVGQTQW--KPKSNQAWDQSFTLELER----SRELEIAVYWRDW----RSLCAVKFLKLEDERHE-   75 (98)
T ss_pred             cccceEEEEEEcCeEEeeccc--cccccccccceeEEEeec----ccEEEEEEEEecc----hhhhhheeeEhhhhccc-
Confidence            456788999998556667765  334688999999999975    5789999998873    36788888888883221 


Q ss_pred             CCCceeeEEEEeecCCCCCceEEEEEEEE
Q 023810          105 GLGERASLTLKLKRPSGRPHGKVDVKVAV  133 (277)
Q Consensus       105 ~~~~~~~~~~~L~~~sg~~~G~L~l~v~~  133 (277)
                             ..+.|     .++|.|...++|
T Consensus        76 -------~~~~l-----epqg~l~~ev~f   92 (98)
T cd08687          76 -------VQLDM-----EPQLCLVAELTF   92 (98)
T ss_pred             -------ceecc-----ccccEEEEEEEe
Confidence                   12222     357888887777

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.23  E-value=0.00028  Score=64.58  Aligned_cols=112  Identities=21%  Similarity=0.181  Sum_probs=80.5

Q ss_pred             CCCceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEE
Q 023810            1 MASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIID   76 (277)
Q Consensus         1 m~~~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~   76 (277)
                      |.+...|+|.|+.|++|.........+.|||+|++..+    .+.+|+. ..++.+|.+-....|+-..   ....|-+.
T Consensus       265 ~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~-A~kT~~plyqq~l~f~~sp---~~k~Lq~t  340 (405)
T KOG2060|consen  265 MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKS-ARKTLDPLYQQQLSFDQSP---PGKYLQGT  340 (405)
T ss_pred             hcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceeccccccc-ccccCchhhhhhhhhccCC---CccEEEEE
Confidence            67778999999999999765434347789999998332    3457777 4567777666667776654   46779999


Q ss_pred             EEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecC
Q 023810           77 VVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP  119 (277)
Q Consensus        77 V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~  119 (277)
                      ||..-.....+.|+|.+.|-|.||-...   .-...||.|.-.
T Consensus       341 v~gdygRmd~k~fmg~aqi~l~eL~ls~---~~~igwyKlfgs  380 (405)
T KOG2060|consen  341 VWGDYGRMDHKSFMGVAQIMLDELNLSS---SPVIGWYKLFGS  380 (405)
T ss_pred             EeccccccchHHHhhHHHHHhhhhcccc---ccceeeeeccCC
Confidence            9985544467789999999988875542   124678888543

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.18  E-value=0.0054  Score=50.46  Aligned_cols=91  Identities=13%  Similarity=0.155  Sum_probs=61.0

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE-CCCCe----EEeeecCCCCCCCccceeEEEecCCCCCC-CceEEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV-DPNKK----CSTKVDDEGDTCPYWDETLAIPLPGPVDD-DTTLIIDVV   78 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l-d~~~~----~~T~v~~~~~~nP~WnE~f~f~v~~~~l~-~~~L~v~V~   78 (277)
                      ..++|+|++++++...    ...+.|+.+.+ ++.+.    ..|+. +. ..++.|||.++|+|.-.++. ...|.|+||
T Consensus         8 ~~~~v~i~~~~~~~~~----~~~~l~V~v~l~~g~~~L~~pv~T~~-v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~   81 (158)
T cd08398           8 SNLRIKILCATYVNVN----DIDKIYVRTGIYHGGEPLCDNVNTQR-VP-CSNPRWNEWLDYDIYIPDLPRSARLCLSIC   81 (158)
T ss_pred             CCeEEEEEeeccCCCC----CcCeEEEEEEEEECCEEccCeeEecc-cC-CCCCccceeEEcccchhcCChhheEEEEEE
Confidence            4688999999988643    24578888876 32322    23332 22 36899999999988665443 467999999


Q ss_pred             EccCCC---CCCceeEEEEEecceec
Q 023810           79 HAGNEE---DTKKLIGSAKLKLKDVI  101 (277)
Q Consensus        79 d~~~~~---~~d~~iG~~~v~L~~l~  101 (277)
                      +.....   .....||.+.++|-+..
T Consensus        82 ~~~~~~~~k~~~~~iG~~ni~LFd~~  107 (158)
T cd08398          82 SVKGRKGAKEEHCPLAWGNINLFDYT  107 (158)
T ss_pred             EEecccCCCCceEEEEEEEEEEECCC
Confidence            965311   12246999999987643

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.14  E-value=0.0077  Score=55.48  Aligned_cols=126  Identities=10%  Similarity=0.116  Sum_probs=89.7

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCC-----CCCCceEEEEEEEcc
Q 023810            7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP-----VDDDTTLIIDVVHAG   81 (277)
Q Consensus         7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~-----~l~~~~L~v~V~d~~   81 (277)
                      +.|.|++++++....    +....+..++| .....|.. +..+..|.||..+...++..     .+++.-|++++|..+
T Consensus         2 ivl~i~egr~F~~~~----~~~~vv~a~~n-g~~l~TDp-v~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~   75 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP----RHPIVVEAKFN-GESLETDP-VPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD   75 (340)
T ss_pred             EEEEEecccCCCCCC----CccEEEEEEeC-CceeeecC-CCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence            578899999887542    33456778886 66677776 67788999999998887664     345566999999977


Q ss_pred             CCCCCCceeEEEEEeccee-ccccCCCceeeEEEEeecCC---CCCceEEEEEEEEEecCC
Q 023810           82 NEEDTKKLIGSAKLKLKDV-INDVGLGERASLTLKLKRPS---GRPHGKVDVKVAVRESRY  138 (277)
Q Consensus        82 ~~~~~d~~iG~~~v~L~~l-~~~~~~~~~~~~~~~L~~~s---g~~~G~L~l~v~~~~~~~  138 (277)
                      .....++.||.+.++|..+ +...........||.|...+   .+.+=+|.|.+++.+...
T Consensus        76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~  136 (340)
T PF12416_consen   76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK  136 (340)
T ss_pred             CCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence            3346778899999999887 22221123457899986542   234678899999887643

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.13  E-value=0.0053  Score=51.30  Aligned_cols=92  Identities=13%  Similarity=0.126  Sum_probs=61.5

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE-CCCC----eEEeeecCCCCCCCccceeEEEecCCCCCC-CceEEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV-DPNK----KCSTKVDDEGDTCPYWDETLAIPLPGPVDD-DTTLIIDVV   78 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l-d~~~----~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~-~~~L~v~V~   78 (277)
                      ..++|+|+++.+|...+   ...+.|+.+.| .+.+    ...|+. .....++.|||.+.|++.-..|- ...|.|.||
T Consensus         8 ~~f~i~i~~~~~~~~~~---~~~~l~V~~~lyhG~~~L~~p~~T~~-~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~   83 (173)
T cd08693           8 EKFSITLHKISNLNAAE---RTMKVGVQAGLFHGGESLCKTVKTSE-VSGKNDPVWNETLEFDINVCDLPRMARLCFAIY   83 (173)
T ss_pred             CCEEEEEEEeccCccCC---CCceEEEEEEEEECCEEccCceEccc-cCCCCccccceeEEcccchhcCChhHeEEEEEE
Confidence            46899999999987522   35677888766 2222    234544 33356799999999987665443 467999999


Q ss_pred             EccCCC---------------CCCceeEEEEEeccee
Q 023810           79 HAGNEE---------------DTKKLIGSAKLKLKDV  100 (277)
Q Consensus        79 d~~~~~---------------~~d~~iG~~~v~L~~l  100 (277)
                      +.....               .....||.+.++|-+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          84 EVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             EecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence            854211               1235788888887664

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=97.11  E-value=0.012  Score=48.04  Aligned_cols=129  Identities=17%  Similarity=0.197  Sum_probs=83.5

Q ss_pred             ceEEEEEEEEeeCCCCC-CCCCCCCCcEEEEEE-CCCCeEEeeecCCCCCCCccceeEEEecCCCCCC-----------C
Q 023810            4 RYEVEVTITSAKDLKNV-NWRHGPNRPYAVLWV-DPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDD-----------D   70 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~-~~~~g~~dpYv~v~l-d~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~-----------~   70 (277)
                      ++-|+|.|...|-+... +...+..+.-..+.+ -.+++++|+. +..+.+|.|+|.|.|.+......           .
T Consensus         8 ~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~-Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~   86 (156)
T PF15627_consen    8 RRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKP-VPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS   86 (156)
T ss_pred             ceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCC-cccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence            46799999998775431 110023333334444 2578899988 88999999999999998764211           2


Q ss_pred             ceEEEEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecC---CCCCceEEEEEEEEEec
Q 023810           71 TTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP---SGRPHGKVDVKVAVRES  136 (277)
Q Consensus        71 ~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~---sg~~~G~L~l~v~~~~~  136 (277)
                      ..|++.|...+. .....++|+-.+.=..++.....  .......|.-.   +.-..|.|+|++.+.++
T Consensus        87 ~pihivli~~d~-~~~~~Lv~s~~ldWR~vL~s~~~--~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~  152 (156)
T PF15627_consen   87 DPIHIVLIRTDP-SGETTLVGSHFLDWRKVLCSGNG--STSFTVELCGVGPESKVPVGILDLRLELLPN  152 (156)
T ss_pred             CceEEEEEEecC-CCceEeeeeceehHHHHhccCCC--ccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence            347777877665 34568888887776666554321  12445555433   22368999999999764

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=97.10  E-value=0.0023  Score=49.12  Aligned_cols=100  Identities=16%  Similarity=0.204  Sum_probs=56.5

Q ss_pred             EEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCC-----CCCCceEEEEEEEccCCCCCCceeEEEEEecceecccc
Q 023810           30 YAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP-----VDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDV  104 (277)
Q Consensus        30 Yv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~-----~l~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~  104 (277)
                      ||.+.+-.-+.+.|.+ .. +.||.+|.+..|.|..+     -++...|.|+++..-.  .+-+.||.++|++..++...
T Consensus         2 Fct~dFydfEtq~Tpv-v~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g--~d~~tla~~~i~l~~ll~~~   77 (107)
T PF11618_consen    2 FCTYDFYDFETQTTPV-VR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG--SDFETLAAGQISLRPLLESN   77 (107)
T ss_dssp             EEEE-STT---EE----EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S--S-EEEEEEEEE--SHHHH--
T ss_pred             EEEEEeeceeeecccc-ee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc--CCeEEEEEEEeechhhhcCC
Confidence            4555552356778888 44 88999999988888764     2345679999988653  34578999999999998654


Q ss_pred             CCCceeeEEEEeecCCCCCceEEEEEEEEEe
Q 023810          105 GLGERASLTLKLKRPSGRPHGKVDVKVAVRE  135 (277)
Q Consensus       105 ~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~  135 (277)
                        ++....+..|...++..-|.|.+.+++..
T Consensus        78 --~~~i~~~~~l~g~~~~~~g~l~y~~rl~~  106 (107)
T PF11618_consen   78 --GERIHGSATLVGVSGEDFGTLEYWIRLRV  106 (107)
T ss_dssp             --S--EEEEEEE-BSSS-TSEEEEEEEEEEE
T ss_pred             --CceEEEEEEEeccCCCeEEEEEEEEEecC
Confidence              33456667777777889999999998864

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=97.08  E-value=0.0077  Score=50.88  Aligned_cols=58  Identities=24%  Similarity=0.400  Sum_probs=45.2

Q ss_pred             eEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC-CCCceeEEEEEecc
Q 023810           40 KCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE-DTKKLIGSAKLKLK   98 (277)
Q Consensus        40 ~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~-~~d~~iG~~~v~L~   98 (277)
                      ..+|.| ...+.+|.|||++++.|+...+....|.|+++|+.... ...+.+|-+.+||-
T Consensus        54 e~~S~V-~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          54 EYRSFV-LYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             eEEEEE-EEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            457777 67788999999999999887667788999999965321 12267999999883

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=97.05  E-value=0.012  Score=49.54  Aligned_cols=58  Identities=24%  Similarity=0.329  Sum_probs=36.4

Q ss_pred             EEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCCC--ceeEEEEEecce
Q 023810           41 CSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDTK--KLIGSAKLKLKD   99 (277)
Q Consensus        41 ~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~d--~~iG~~~v~L~~   99 (277)
                      ..|.| ...+.+|.|+|+|.+.|......+..|.|+++|.......+  ..+|.+.+||-+
T Consensus        61 ~~S~v-~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   61 YYSSV-YYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             EE-----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEE-EecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            45555 56678999999999999876555678999999965322222  689999999977

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.90  E-value=0.012  Score=48.08  Aligned_cols=92  Identities=14%  Similarity=0.157  Sum_probs=60.1

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CCC---CeEEeeecCCCCCCCccceeEEEecCCCCCC-CceEEEEEEE
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DPN---KKCSTKVDDEGDTCPYWDETLAIPLPGPVDD-DTTLIIDVVH   79 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~~---~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~-~~~L~v~V~d   79 (277)
                      .++|+|....++...+ . ...+.|+.+.+  +.+   ....|+. .....++.|||.+.|++.-..+. +..|.|.||+
T Consensus         9 ~~~i~i~~~~~~~~~~-~-~~~~l~V~~~l~~g~~~l~~~~~t~~-~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~   85 (156)
T cd08380           9 NLRIKIHGITNINLLD-S-EDLKLYVRVQLYHGGEPLCPPQSTKK-VPFSTSVTWNEWLTFDILISDLPREARLCLSIYA   85 (156)
T ss_pred             CeEEEEEeeccccccC-C-CceeEEEEEEEEECCEEccCceeccC-CcCCCCCcccceeEccchhhcCChhheEEEEEEE
Confidence            5778888877765422 1 35667887776  221   1224433 33346899999999987554343 4679999999


Q ss_pred             ccCCC-CCCceeEEEEEeccee
Q 023810           80 AGNEE-DTKKLIGSAKLKLKDV  100 (277)
Q Consensus        80 ~~~~~-~~d~~iG~~~v~L~~l  100 (277)
                      ..... .....||.+.++|-+.
T Consensus        86 ~~~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          86 VSEPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             EecCCCCcceEEEEEeEEeEcc
Confidence            66321 1357899999998764

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=96.87  E-value=0.0091  Score=50.59  Aligned_cols=58  Identities=19%  Similarity=0.222  Sum_probs=44.6

Q ss_pred             eEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC---CCceeEEEEEecc
Q 023810           40 KCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED---TKKLIGSAKLKLK   98 (277)
Q Consensus        40 ~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~---~d~~iG~~~v~L~   98 (277)
                      ..+|.| ...+.+|.|+|++++.|+...+....|.|+++|+.....   ....+|-+.+||-
T Consensus        54 e~~S~V-~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          54 EYKSVI-YYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eEEEEE-EeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            457777 667889999999999998876677889999999653212   2257899999874

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.80  E-value=0.012  Score=48.56  Aligned_cols=73  Identities=18%  Similarity=0.216  Sum_probs=51.2

Q ss_pred             CCCCcEEEEEE-CCCC----eEEeeecCCCCCCCccceeEEEecCCCCCC-CceEEEEEEEccCCCCCCceeEEEEEecc
Q 023810           25 GPNRPYAVLWV-DPNK----KCSTKVDDEGDTCPYWDETLAIPLPGPVDD-DTTLIIDVVHAGNEEDTKKLIGSAKLKLK   98 (277)
Q Consensus        25 g~~dpYv~v~l-d~~~----~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~-~~~L~v~V~d~~~~~~~d~~iG~~~v~L~   98 (277)
                      ...+.||.+.| +...    -..|+. ..-+....|||.+.|+|.-.++. +..|.|+||+.... .....||.++++|-
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~-~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~-~~~~~vg~~~~~lF  105 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSY-KPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT-GKAVPFGGTTLSLF  105 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccc-cCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC-CCceEEEEEEEeeE
Confidence            45778888877 2222    224444 34456788999999998765443 56799999997642 35568999999886


Q ss_pred             e
Q 023810           99 D   99 (277)
Q Consensus        99 ~   99 (277)
                      +
T Consensus       106 d  106 (159)
T cd08397         106 N  106 (159)
T ss_pred             C
Confidence            6

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.62  E-value=0.033  Score=46.66  Aligned_cols=73  Identities=8%  Similarity=-0.019  Sum_probs=46.3

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE-CCCC---eEEeeecCCCCCCCccceeEEEecCCCCCC-CceEEEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV-DPNK---KCSTKVDDEGDTCPYWDETLAIPLPGPVDD-DTTLIIDVVH   79 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l-d~~~---~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~-~~~L~v~V~d   79 (277)
                      ..++|+|..+..+ +.+.. .....||.+.| .+..   ..+|+. ..-+.++.|||.+.|+|.-.++. ...|.|+||+
T Consensus        10 ~~friki~~~~~~-~~~~~-~~~~l~V~~~Ly~g~~~l~~~~T~~-~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~   86 (178)
T cd08399          10 RKFRVKILGIDIP-VLPRN-TDLTVFVEANIQHGQQVLCQRRTSP-KPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYC   86 (178)
T ss_pred             CCEEEEEEeeccc-CcCCC-CceEEEEEEEEEECCeecccceeec-cCCCCCccccccEECccccccCChhhEEEEEEEE
Confidence            3578888888633 22211 34456777655 2222   224544 34467799999999998765443 4679999998


Q ss_pred             c
Q 023810           80 A   80 (277)
Q Consensus        80 ~   80 (277)
                      .
T Consensus        87 ~   87 (178)
T cd08399          87 G   87 (178)
T ss_pred             E
Confidence            5

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=96.47  E-value=0.0062  Score=54.74  Aligned_cols=118  Identities=16%  Similarity=0.091  Sum_probs=77.0

Q ss_pred             eEEEEEEEEeeCCCCCCC-CCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC
Q 023810            5 YEVEVTITSAKDLKNVNW-RHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE   83 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~-~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~   83 (277)
                      ..|.|.+...++|+-... ..-+.+-||++.+|...+.||.+ ...+.--.|.|+|.++|-.    ...|.+-||.+..-
T Consensus        51 GiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~v-rs~~~~f~w~e~F~~Dvv~----~~vl~~lvySW~pq  125 (442)
T KOG1452|consen   51 GILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRV-RSSGPGFAWAEDFKHDVVN----IEVLHYLVYSWPPQ  125 (442)
T ss_pred             ceEEEEEecccccccChhccCceeeeeeeeeecccCcccccc-ccCCCCccchhhceeeccc----ceeeeEEEeecCch
Confidence            467888899999975322 22356789999998778888988 6666777899999999864    35688888887753


Q ss_pred             CCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEec
Q 023810           84 EDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRES  136 (277)
Q Consensus        84 ~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~~  136 (277)
                       .+.++.=.-.+.+..+....+.   +.+.+.|     +++|.+-|++.+.+.
T Consensus       126 -~RHKLC~~g~l~~~~v~rqspd---~~~Al~l-----ePrgq~~~r~~~~Dp  169 (442)
T KOG1452|consen  126 -RRHKLCHLGLLEAFVVDRQSPD---RVVALYL-----EPRGQPPLRLPLADP  169 (442)
T ss_pred             -hhccccccchhhhhhhhhcCCc---ceeeeec-----ccCCCCceecccCCh
Confidence             3445433333444434333221   2333433     346777777777654

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.33  E-value=0.026  Score=46.97  Aligned_cols=93  Identities=18%  Similarity=0.182  Sum_probs=59.5

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEE-CCCCe----EEeeec---CCCCCCCccceeEEEecCCCCCC-CceEEEE
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWV-DPNKK----CSTKVD---DEGDTCPYWDETLAIPLPGPVDD-DTTLIID   76 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l-d~~~~----~~T~v~---~~~~~nP~WnE~f~f~v~~~~l~-~~~L~v~   76 (277)
                      .+.|+|.++.++.... .....+-|+.+.| .+.+.    ..|+..   ..-.....|||.+.|++.-..+- +..|.|.
T Consensus         9 ~~~i~v~~~h~~~~~~-~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it   87 (171)
T cd04012           9 LLSVTVSSLHRIPPTW-VQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT   87 (171)
T ss_pred             cEEEEEEEeecCChHH-hhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence            5788999998887543 2245778888877 22222    234321   11123577999999988654443 4679999


Q ss_pred             EEEccCCCC--------CCceeEEEEEecce
Q 023810           77 VVHAGNEED--------TKKLIGSAKLKLKD   99 (277)
Q Consensus        77 V~d~~~~~~--------~d~~iG~~~v~L~~   99 (277)
                      ||+......        .+..||.+.++|-+
T Consensus        88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd  118 (171)
T cd04012          88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFD  118 (171)
T ss_pred             EEEEecCCccccccccccceEEEEEeEeeEc
Confidence            999653210        34688888888766

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=96.22  E-value=0.0013  Score=66.73  Aligned_cols=122  Identities=16%  Similarity=0.151  Sum_probs=84.9

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCC------CCCC-ceEEEEEE
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP------VDDD-TTLIIDVV   78 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~------~l~~-~~L~v~V~   78 (277)
                      .+++.|.+|+.|...+.. +.+|||+.+.+ -++.+.|-+ +.+++||.||+++.|.--+.      -+++ -.+.|+||
T Consensus       207 ~lR~yiyQar~L~a~dk~-~~sdp~a~v~f-~~qs~~T~~-v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~y  283 (1105)
T KOG1326|consen  207 PLRSYIYQARALGAPDKD-DESDPDAAVEF-CGQSKETEV-VPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVY  283 (1105)
T ss_pred             hhHHHHHHHHhhcCCCcc-cCCCchhhhhc-ccccceeEe-ecCcCCCCccceeeccceeecCccchhhcCCCeEEEEee
Confidence            456667788888777654 78899998887 366677888 88999999999998862221      1111 34789999


Q ss_pred             EccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEecC
Q 023810           79 HAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRESR  137 (277)
Q Consensus        79 d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~~~  137 (277)
                      |.++ ...++|+|+..+...-... .+    ...|+++.+ ++...|.+.++..+..-+
T Consensus       284 d~dr-~g~~ef~gr~~~~p~V~~~-~p----~lkw~p~~r-g~~l~gd~l~a~eliq~~  335 (1105)
T KOG1326|consen  284 DLDR-SGINEFKGRKKQRPYVMVQ-CP----ALKWVPTMR-GAFLDGDVLIAAELIQIG  335 (1105)
T ss_pred             hhhh-hchHHhhcccccceEEEec-CC----ccceEEeec-ccccccchhHHHHHHhhc
Confidence            9886 4688999998776554433 22    245666644 556678888877665543

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=95.79  E-value=0.036  Score=53.52  Aligned_cols=87  Identities=21%  Similarity=0.336  Sum_probs=61.2

Q ss_pred             EEeeCCCCCCCCCCCCCcEEEEEE---CCC--CeEEeeecCCCCCCCccceeEEEecCCC--CCCCceEEEEEEEccCCC
Q 023810           12 TSAKDLKNVNWRHGPNRPYAVLWV---DPN--KKCSTKVDDEGDTCPYWDETLAIPLPGP--VDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus        12 ~~A~~L~~~~~~~g~~dpYv~v~l---d~~--~~~~T~v~~~~~~nP~WnE~f~f~v~~~--~l~~~~L~v~V~d~~~~~   84 (277)
                      +.|+.|.+++++ +++|+|..+.-   +..  ...+|.+ +++++||.|.+. .+.+..-  .-.++.+.|++|+.+. .
T Consensus       143 ~~~~~ld~kd~f-~ksd~~l~~~~~~~d~s~~~~~~tEv-~~n~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~-~  218 (529)
T KOG1327|consen  143 FRAKNLDPKDFF-SKSDPYLEFYKRVDDGSTQMLYRTEV-VKNTLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDS-N  218 (529)
T ss_pred             eeeeecCccccc-ccCCcceEEEEecCCCceeeccccce-eccCCCCccccc-ccchhhhcccCCCCceEEEEeccCC-C
Confidence            457888888876 89999987654   222  2358888 788999999753 3332221  1124678899999886 3


Q ss_pred             CCCceeEEEEEecceecc
Q 023810           85 DTKKLIGSAKLKLKDVIN  102 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~  102 (277)
                      ..+++||++...+.++..
T Consensus       219 ~~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  219 GKHDLIGKFQTTLSELQE  236 (529)
T ss_pred             CCcCceeEecccHHHhcc
Confidence            566899999998888753

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=95.73  E-value=0.13  Score=43.00  Aligned_cols=56  Identities=21%  Similarity=0.376  Sum_probs=41.3

Q ss_pred             EeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC----CCCCceeEEEEEecce
Q 023810           42 STKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE----EDTKKLIGSAKLKLKD   99 (277)
Q Consensus        42 ~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~----~~~d~~iG~~~v~L~~   99 (277)
                      +|.+ ..+ .+|.|+|+|.+.|+........|.|+++|....    ......+|-+.+||-+
T Consensus        56 ~sv~-~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          56 TSVV-YYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEE-EcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            4444 444 899999999999976433567899999996531    1345789999999865

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins

Probab=95.45  E-value=0.056  Score=47.61  Aligned_cols=24  Identities=38%  Similarity=0.718  Sum_probs=12.3

Q ss_pred             CchhHHHHHHHHHHHhHhhhhhhhh
Q 023810          228 GMGTGLAVGAVGGILGGLALAEGVD  252 (277)
Q Consensus       228 g~g~g~~~g~~~g~~gg~~~~~~~~  252 (277)
                      ||. +-|+..+|||+||++|..++.
T Consensus       136 gFL-g~A~~TAAGVAGG~lL~n~i~  159 (247)
T PF09849_consen  136 GFL-GGAAQTAAGVAGGMLLANGIE  159 (247)
T ss_pred             cHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            554 444455555555555554444

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=95.18  E-value=0.12  Score=41.59  Aligned_cols=57  Identities=25%  Similarity=0.304  Sum_probs=38.7

Q ss_pred             EeeecCCCC-CCCccceeEEEecCCCCC-CCceEEEEEEEccCCCCCC----ceeEEEEEeccee
Q 023810           42 STKVDDEGD-TCPYWDETLAIPLPGPVD-DDTTLIIDVVHAGNEEDTK----KLIGSAKLKLKDV  100 (277)
Q Consensus        42 ~T~v~~~~~-~nP~WnE~f~f~v~~~~l-~~~~L~v~V~d~~~~~~~d----~~iG~~~v~L~~l  100 (277)
                      +|+. ...+ .++.|||.+.|++.-..+ .+..|.|.||..... ...    ..||.+.++|-+.
T Consensus        23 ~T~~-~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~-~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSY-VPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK-KKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S--EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS-TTT--EEEEEEEEEEESB-T
T ss_pred             eccc-cccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC-CccccceeEEEEEEEEeECC
Confidence            4544 2333 699999999998654433 357799999997642 222    6899999998774

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=95.04  E-value=0.09  Score=44.12  Aligned_cols=59  Identities=22%  Similarity=0.345  Sum_probs=43.0

Q ss_pred             eEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCC-----CCceeEEEEEecce
Q 023810           40 KCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEED-----TKKLIGSAKLKLKD   99 (277)
Q Consensus        40 ~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~-----~d~~iG~~~v~L~~   99 (277)
                      ...|.| ...+.+|.|+|+|.+.|+....+...|.|+++|.+....     ....+|-+.+||-+
T Consensus        55 ~~~S~V-~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~  118 (179)
T cd08696          55 EAYTAV-TYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR  118 (179)
T ss_pred             eEEEEE-EEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence            456777 567889999999999998754445679999999542111     23579999998853

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=94.90  E-value=0.11  Score=43.75  Aligned_cols=59  Identities=19%  Similarity=0.285  Sum_probs=42.9

Q ss_pred             eEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC--------CCCceeEEEEEecce
Q 023810           40 KCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE--------DTKKLIGSAKLKLKD   99 (277)
Q Consensus        40 ~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~--------~~d~~iG~~~v~L~~   99 (277)
                      ...|.| ...+.+|.|+|++.+.|.........|.|+++|.+...        .....+|-+.+||-.
T Consensus        57 ~~~s~V-~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          57 SAYAAV-LHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             EEEEEE-EEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            356677 55679999999999999875444567999999965211        123578999998854

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=94.21  E-value=0.35  Score=36.47  Aligned_cols=73  Identities=18%  Similarity=0.139  Sum_probs=45.3

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCcEEEEEE-CCCC----eEEeeecCCCCCCCccceeEEEecCCCCCC-CceEEEEEEEc
Q 023810            7 VEVTITSAKDLKNVNWRHGPNRPYAVLWV-DPNK----KCSTKVDDEGDTCPYWDETLAIPLPGPVDD-DTTLIIDVVHA   80 (277)
Q Consensus         7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~l-d~~~----~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~-~~~L~v~V~d~   80 (277)
                      +.+++...+++...... ...+.|+.+.+ .+..    ...|+. ..-..++.|||.+.|++.-.++. +..|.|.||+.
T Consensus        13 ~~~~~~~~~~~~l~~~~-~~~~l~v~~~l~~g~~~l~~pv~t~~-~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~   90 (100)
T smart00142       13 LVITIALIHGIPLNWSR-DYSDLYVEIQLYHGGKLLCLPVSTSY-KPFFPSVKWNEWLTFPIQISDLPREARLCITIYEV   90 (100)
T ss_pred             eEEEEEEeeCCCccccc-CcceEEEEEEEEECCEEccCcEEecc-cCCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence            55666666666543211 22478888877 2222    224443 34455689999999987665443 46799999985


Q ss_pred             c
Q 023810           81 G   81 (277)
Q Consensus        81 ~   81 (277)
                      .
T Consensus        91 ~   91 (100)
T smart00142       91 K   91 (100)
T ss_pred             e
Confidence            4

Outlier of C2 family.

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=92.54  E-value=0.51  Score=39.11  Aligned_cols=71  Identities=10%  Similarity=0.163  Sum_probs=52.0

Q ss_pred             CCCcEEEEEECCCCeEEeeec-CCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCCCCCceeEEEEEecceec
Q 023810           26 PNRPYAVLWVDPNKKCSTKVD-DEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVI  101 (277)
Q Consensus        26 ~~dpYv~v~ld~~~~~~T~v~-~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~  101 (277)
                      +..-|+++.++.+...+|+.. +...-.-.|||.|.+.|..  + -+.|.|+||....  ..+.+|+++.|||-...
T Consensus        36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~--~-Pesi~l~i~E~~~--~~~~~la~v~vpvP~~~  107 (168)
T PF15625_consen   36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR--W-PESIKLEIYEKSG--LSDRLLAEVFVPVPGST  107 (168)
T ss_pred             heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec--C-CCEEEEEEEEccC--ccceEEEEEEeeCCCCc
Confidence            456789999976666677652 2233345678999999865  2 3679999999885  57889999999986543

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=89.98  E-value=0.65  Score=45.06  Aligned_cols=60  Identities=13%  Similarity=0.236  Sum_probs=44.9

Q ss_pred             EEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC---CCCCceeEEEEEecceeccc
Q 023810           41 CSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE---EDTKKLIGSAKLKLKDVIND  103 (277)
Q Consensus        41 ~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~---~~~d~~iG~~~v~L~~l~~~  103 (277)
                      .||.+ +.+.+||.|.++|.+...-+  ....|.|++++.+..   ....+|+|++...|..+...
T Consensus        43 ~rte~-i~~~~~p~f~~~~~l~y~fE--~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~  105 (529)
T KOG1327|consen   43 GRTEV-IRNVLNPFFTKKFLLQYRFE--KVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSS  105 (529)
T ss_pred             cceee-eeccCCccceeeechhheee--eeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhh
Confidence            37777 78899999999988765431  235688999886532   35678999999998887755

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=86.33  E-value=6.4  Score=37.91  Aligned_cols=10  Identities=30%  Similarity=0.634  Sum_probs=7.0

Q ss_pred             ccceeEEEec
Q 023810           54 YWDETLAIPL   63 (277)
Q Consensus        54 ~WnE~f~f~v   63 (277)
                      .|+|..-|++
T Consensus       249 gwd~~~gf~~  258 (569)
T KOG3671|consen  249 GWDEQVGFDS  258 (569)
T ss_pred             CCCcCCCccc
Confidence            4888776665

>PF14924 DUF4497: Protein of unknown function (DUF4497)

Probab=85.36  E-value=3.7  Score=31.50  Aligned_cols=66  Identities=21%  Similarity=0.278  Sum_probs=44.5

Q ss_pred             CceEEEEEEEccCC--CCCCceeEEEEEecceecccc----------CCCceeeEEEEeecCCCCCceEEEEEEEEEe
Q 023810           70 DTTLIIDVVHAGNE--EDTKKLIGSAKLKLKDVINDV----------GLGERASLTLKLKRPSGRPHGKVDVKVAVRE  135 (277)
Q Consensus        70 ~~~L~v~V~d~~~~--~~~d~~iG~~~v~L~~l~~~~----------~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~  135 (277)
                      ...|.+.+++...-  .....+||.+.|++.+....-          .........|.|.++.+..-|+|.|.+++.-
T Consensus        28 ~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~G~I~l~iRLsc  105 (112)
T PF14924_consen   28 SFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPVGEISLYIRLSC  105 (112)
T ss_pred             CCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCceeeeEEEEEEEec
Confidence            45577777664321  245578999999997755221          1112346778898888888999999998854

>PTZ00447 apical membrane antigen 1-like protein; Provisional

Probab=85.29  E-value=8.5  Score=35.57  Aligned_cols=110  Identities=17%  Similarity=0.145  Sum_probs=62.6

Q ss_pred             EEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccc--eeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            7 VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWD--ETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         7 L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~Wn--E~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      |.|.|.+-.++.      -....|+.+..+ +...+|.. +.-+..-+-+  +...+.+..   -+.+|+|.+|-..-  
T Consensus        60 LLVeI~EI~~i~------k~khiyIef~~G-r~d~TT~~-IpTsKK~RI~IqqRV~IkIRQ---cDnTLkI~lfKKkL--  126 (508)
T PTZ00447         60 LLVKINEIFNIN------KYKHIYIIFSTD-KYDFTTDE-IPTNKKNRIHIDQRVDIKIRQ---CDETLRVDLFTTKL--  126 (508)
T ss_pred             EEEEehhhhccc------cceeEEEEEEcC-ceEEEccc-cccCcCceEEEeeeeeeeeee---cCceEEEEEEeccc--
Confidence            445555544332      234568888885 66666643 2212222223  444444432   36789999998873  


Q ss_pred             CCCceeEEEEEecc-eeccccCCCceeeEEEEeecCCCCCceEEEEEEEE
Q 023810           85 DTKKLIGSAKLKLK-DVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAV  133 (277)
Q Consensus        85 ~~d~~iG~~~v~L~-~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~  133 (277)
                      ....-||.+.|.+. +++++.-   -...||.+ .+.|...+.|.|++.=
T Consensus       127 vkk~hIgdI~InIn~dIIdk~F---PKnkWy~c-~kDGq~~cRIqLSFhK  172 (508)
T PTZ00447        127 TKKVHIGQIKIDINASVISKSF---PKNEWFVC-FKDGQEICKVQMSFYK  172 (508)
T ss_pred             cceeEEEEEEecccHHHHhccC---CccceEEE-ecCCceeeeEEEEehh
Confidence            45667999999885 4444321   12456666 5577777777766543

>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]

Probab=84.06  E-value=9.6  Score=33.31  Aligned_cols=18  Identities=28%  Similarity=0.510  Sum_probs=14.2

Q ss_pred             CCCCCceEEEEEEEEEec
Q 023810          119 PSGRPHGKVDVKVAVRES  136 (277)
Q Consensus       119 ~sg~~~G~L~l~v~~~~~  136 (277)
                      ..|...|+.++++.|.+-
T Consensus       102 pgGg~~g~as~Kl~F~~G  119 (261)
T KOG3294|consen  102 PGGGWEGEASFKLTFNEG  119 (261)
T ss_pred             CCCCccceeEEEEEecCC
Confidence            356678999999999774

>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species

Probab=83.87  E-value=18  Score=29.79  Aligned_cols=84  Identities=13%  Similarity=0.184  Sum_probs=53.7

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC---------CCC-eEEeeecCC----CCCCCccceeEEEecCCCCCCC-
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVD---------PNK-KCSTKVDDE----GDTCPYWDETLAIPLPGPVDDD-   70 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld---------~~~-~~~T~v~~~----~~~nP~WnE~f~f~v~~~~l~~-   70 (277)
                      .+.-.|.+|++..       ..+.||+..++         +.. ...|.++..    ++..-.||.-|.+.+..+.... 
T Consensus         3 ~v~G~I~~a~~f~-------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gw   75 (168)
T PF07162_consen    3 HVIGEIESAEGFE-------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGW   75 (168)
T ss_pred             EEEEEEEEEECCC-------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCC
Confidence            3555678887653       33678887761         223 345655332    2445779988877765532222 


Q ss_pred             ceEEEEEEEccCCCCCCceeEEEEEec
Q 023810           71 TTLIIDVVHAGNEEDTKKLIGSAKLKL   97 (277)
Q Consensus        71 ~~L~v~V~d~~~~~~~d~~iG~~~v~L   97 (277)
                      -+|.|+||..+. .+++.+.|-..+.|
T Consensus        76 P~L~l~V~~~D~-~gr~~~~GYG~~~l  101 (168)
T PF07162_consen   76 PQLVLQVYSLDS-WGRDRVEGYGFCHL  101 (168)
T ss_pred             ceEEEEEEEEcc-cCCeEEeEEeEEEe
Confidence            479999999986 57888898765544

Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.

>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins

Probab=81.00  E-value=5.3  Score=35.30  Aligned_cols=30  Identities=23%  Similarity=0.331  Sum_probs=23.6

Q ss_pred             cCCCchhHHHHHHHHHHHhHhhhhhhhhhhh
Q 023810          225 KFGGMGTGLAVGAVGGILGGLALAEGVDALE  255 (277)
Q Consensus       225 ~~~g~g~g~~~g~~~g~~gg~~~~~~~~~~~  255 (277)
                      =++++ +..|+||++|+|.+-+|..+++++.
T Consensus       137 FLg~A-~~TAAGVAGG~lL~n~i~~lF~~~~  166 (247)
T PF09849_consen  137 FLGGA-AQTAAGVAGGMLLANGIESLFGGHS  166 (247)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            34344 4889999999999999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	277
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	7e-12
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	2e-10
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	6e-10
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	1e-09
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	3e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-04
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	4e-08
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	9e-08
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	1e-06
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	3e-06
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	4e-06
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	5e-06
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	7e-06
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-05
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	8e-06
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	3e-05
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	5e-05
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	4e-04
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	5e-05
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-04
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	6e-05
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	9e-05
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	3e-04
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	3e-04
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	7e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	8e-04

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 61.1 bits (148), Expect = 7e-12
 Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 22/136 (16%)

Query: 7   VEVTITSAKDLKNVNWRHGPNR---------PYAVLWVDPNKKCSTKVDDEGDTCPYWDE 57
           + V I  A  L+   W    +          PY  + VD  +   T    +    P ++E
Sbjct: 31  LRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTST-KQKTNKPTYNE 89

Query: 58  TLAIPLPGPVDDDTTLIIDVVHAGNEEDT---KKLIGSAKLKLKDVINDVGLGERASLTL 114
                    V D   L + V H    E        + +  L+ ++++   G  +     +
Sbjct: 90  EFCA----NVTDGGHLELAVFH----ETPLGYDHFVANCTLQFQELLRTTGASDTFEGWV 141

Query: 115 KLKRPSGRPHGKVDVK 130
            L+ P G+    + + 
Sbjct: 142 DLE-PEGKVFVVITLT 156

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 56.8 bits (137), Expect = 2e-10
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 29/144 (20%)

Query: 7   VEVTITSAKDLKNVNW--RHGPNR--------PYAVLWVDPNKKCSTKVDDEGDTCPYWD 56
           +++ I  A  LK   W  R             PY  L VD ++   T    +    P W 
Sbjct: 8   LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTAT-KQKTNSPAWH 66

Query: 57  ETLAIPLPGPVDDDTTLIIDVVHAGNEEDT---KKLIGSAKLKLKDVINDVGLGERASLT 113
           +         V +   + + V H    +        + +  ++ ++++ +        + 
Sbjct: 67  DEFVT----DVCNGRKIELAVFH----DAPIGYDDFVANCTIQFEELLQNGSRHFEDWID 118

Query: 114 LKLKRPSGRPHGKVDVKVAVRESR 137
           L+       P GKV V + +  S 
Sbjct: 119 LE-------PEGKVYVIIDLSGSS 135

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 27/140 (19%), Positives = 51/140 (36%), Gaps = 21/140 (15%)

Query: 7   VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP 66
           +EV + SAK L++ ++      PY  L      +  + V +   T P W+ET    +   
Sbjct: 12  LEVVLVSAKGLEDADFL-NNMDPYVQLTCRTQDQ-KSNVAEGMGTTPEWNETFIFTVS-- 67

Query: 67  VDDDTTLIIDVVHAGNEEDTKK---LIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP 123
            +  T L   +     ++D       +G A + L+ V  +  +      T          
Sbjct: 68  -EGTTELKAKIF----DKDVGTEDDAVGEATIPLEPVFVEGSIPP----TAYNVVKDEEY 118

Query: 124 HGKVDVKVAVRESRYAPPGA 143
            G++ V +      + P G 
Sbjct: 119 KGEIWVAL-----SFKPSGP 133

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 21/141 (14%), Positives = 53/141 (37%), Gaps = 22/141 (15%)

Query: 3   SRYEVEVTITSAKDLKNVNW--RHGPNRPYAVLWV--DPNKKCSTKVDDEGDTC-PYWDE 57
           S ++  V +  A  +    +        PY  L++   P+ +  T+  +  +   P W+E
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFN--NDINPVWNE 58

Query: 58  TLAIPLPGPVDDDTTLIIDVVHAGNEEDTKK--LIGSAKLKLKDVINDVGLGERASLTLK 115
           T    L    ++   L I +     + +      +G+A   +    + + +GE+  +   
Sbjct: 59  TFEFILDPNQEN--VLEITL----MDANYVMDETLGTATFTV----SSMKVGEKKEVPFI 108

Query: 116 LKRPSGRPHGKVDVKVAVRES 136
             + +      +++ + V  S
Sbjct: 109 FNQVT---EMVLEMSLEVASS 126

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 28/137 (20%), Positives = 53/137 (38%), Gaps = 20/137 (14%)

Query: 7   VEVTITSAKDLKNVNWRHGPNR---PYAVLWVDPNKKC-STKVDDEGDTC-PYWDETLAI 61
           + +T+  AK+L   +      R   P+A + VD + +C ST      +T  P W++   +
Sbjct: 7   IRLTVLCAKNLAKKD----FFRLPDPFAKIVVDGSGQCHSTDTVK--NTLDPKWNQHYDL 60

Query: 62  PLPGPVDDDTTLIIDVV--HAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP 119
                V    ++ I V      +++     +G  +L     I+ +       L L    P
Sbjct: 61  ----YVGKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNA-ISRLKDTGYQRLDLCKLNP 115

Query: 120 S--GRPHGKVDVKVAVR 134
           S      G++ V +  R
Sbjct: 116 SDTDAVRGQIVVSLQTR 132

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 52.9 bits (126), Expect = 4e-08
 Identities = 15/75 (20%), Positives = 18/75 (24%), Gaps = 3/75 (4%)

Query: 139 APPGAYHTPPYGVPPSGSRDYPAPPPYGYPYGRPPQDPYYATAPPPSGYPYGAYNAPPAY 198
              G    PP G  PS  +     P     + +  Q             P      P AY
Sbjct: 40  MSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLV---DPNAY 96

Query: 199 GQPSYGAYGAAPPGG 213
            QP        P   
Sbjct: 97  MQPQVPVQMGTPLQQ 111

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.8 bits (118), Expect = 5e-07
 Identities = 6/80 (7%), Positives = 11/80 (13%)

Query: 139 APPGAYHTPPYGVPPSGSRDYPAPPPYGYPYGRPPQDPYYATAPPPSGYPYGAYNAPPAY 198
                Y      +        P  P            P     P      +        +
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 199 GQPSYGAYGAAPPGGYYGQV 218
            Q             +   +
Sbjct: 71  QQIDQATTSMNDMHLHNVPL 90

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.1 bits (116), Expect = 8e-07
 Identities = 10/77 (12%), Positives = 12/77 (15%)

Query: 138 YAPPGAYHTPPYGVPPSGSRDYPAPPPYGYPYGRPPQDPYYATAPPPSGYPYGAYNAPPA 197
              P     P  G     +                  D +    P      Y     P  
Sbjct: 45  MGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQ 104

Query: 198 YGQPSYGAYGAAPPGGY 214
            G P            Y
Sbjct: 105 MGTPLQQQQQPMAAPAY 121

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.7 bits (110), Expect = 5e-06
 Identities = 10/83 (12%), Positives = 15/83 (18%), Gaps = 3/83 (3%)

Query: 138 YAPPGAYHTPPYGVPP--SGSRDYPAPPPYGYPYGRPPQDPYYATAPPPSGYPYGAYN-A 194
                    P   +PP    +           P G  P         P     +   + A
Sbjct: 17  GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQA 76

Query: 195 PPAYGQPSYGAYGAAPPGGYYGQ 217
             +             P  Y   
Sbjct: 77  TTSMNDMHLHNVPLVDPNAYMQP 99

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.0 bits (108), Expect = 7e-06
 Identities = 14/78 (17%), Positives = 16/78 (20%), Gaps = 7/78 (8%)

Query: 140 PPGAYHTPPYGVPPSGSRDYPAPPPYGYPYGRPPQDPYYATAPPPSGYPYGAYNAPPAYG 199
               Y                A P        PPQDP  A              A P+ G
Sbjct: 5   KKRVYPQAQLQYG------QNATPLQQPAQFMPPQDPAAA-GMSYGQMGMPPQGAVPSMG 57

Query: 200 QPSYGAYGAAPPGGYYGQ 217
           Q  +             Q
Sbjct: 58  QQQFLTPAQEQLHQQIDQ 75

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 12/76 (15%), Positives = 16/76 (21%), Gaps = 1/76 (1%)

Query: 139 APPGAYHTPPYGVPPSGSRDYPAPPPYGYPYGRPPQDPY-YATAPPPSGYPYGAYNAPPA 197
                + TP                   + +  P  DP  Y     P             
Sbjct: 56  MGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQP 115

Query: 198 YGQPSYGAYGAAPPGG 213
              P+YG   AA    
Sbjct: 116 MAAPAYGQPSAAMGQN 131

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 10/79 (12%), Positives = 13/79 (16%), Gaps = 1/79 (1%)

Query: 140 PPGAYHTPPYGVPPSGSRDYPAPP-PYGYPYGRPPQDPYYATAPPPSGYPYGAYNAPPAY 198
           P           P      +  P  P                A P  G       A    
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 199 GQPSYGAYGAAPPGGYYGQ 217
            Q    A  +      +  
Sbjct: 70  HQQIDQATTSMNDMHLHNV 88

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 41.3 bits (96), Expect = 3e-04
 Identities = 15/62 (24%), Positives = 17/62 (27%), Gaps = 6/62 (9%)

Query: 157 RDYPAPPPYGYPYGRPPQDPYYATAPPPSGYPYGAYNAPPAYGQPSYGAYGAAPPGGYYG 216
           R YP      Y     P        P     P     A  +YGQ      GA P  G   
Sbjct: 7   RVYPQAQ-LQYGQNATPLQQ-----PAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ 60

Query: 217 QV 218
            +
Sbjct: 61  FL 62

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 50.4 bits (120), Expect = 4e-08
 Identities = 24/134 (17%), Positives = 51/134 (38%), Gaps = 18/134 (13%)

Query: 9   VTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVD 68
           V + +  +L+      G     A +        S  +++  D    +DET   P+   +D
Sbjct: 25  VHLKTVSELR------GRADRIAKVTFRGQSFYSRVLENCEDVA-DFDETFRWPVASSID 77

Query: 69  DDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP-HGKV 127
            +  L I + +      + KLIG+ ++ L+ V+ +     R  ++  L   +       +
Sbjct: 78  RNEVLEIQIFNYSKVF-SNKLIGTFRMVLQKVVEE----NRVEVSDTLIDDNNAIIKTSL 132

Query: 128 DVKVAVRESRYAPP 141
            ++V     RY   
Sbjct: 133 SMEV-----RYQAA 141

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 49.3 bits (118), Expect = 9e-08
 Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 15/138 (10%)

Query: 7   VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPG- 65
           + V + SA ++     + G   P   +     KK  TK   + +  P W+E L   L G 
Sbjct: 9   LRVIVESASNIPKT--KFGKPDPIVSVIFKDEKK-KTKKV-DNELNPVWNEILEFDLRGI 64

Query: 66  PVDDDTTLIIDVVHAGNEEDTKK--LIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP 123
           P+D  ++L I V    + E   +  LIG+A + LKD+  D        L   L       
Sbjct: 65  PLDFSSSLGIIVK---DFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDT 121

Query: 124 HGKVDVKVAVRESRYAPP 141
              +D+ +      Y PP
Sbjct: 122 GATIDLVI-----GYDPP 134

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 47.1 bits (111), Expect = 1e-06
 Identities = 27/128 (21%), Positives = 38/128 (29%), Gaps = 1/128 (0%)

Query: 138 YAPPGAYHTPPYGVPPSGSRDYPAPPPYGYPYGRPPQDPYYATAPPPSGYPYGAYNAPPA 197
               G    P  G P            +G P+G     P+      P G  +G       
Sbjct: 11  GWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWG-QPHGGG 69

Query: 198 YGQPSYGAYGAAPPGGYYGQVEEKKKSKFGGMGTGLAVGAVGGILGGLALAEGVDALEDH 257
           +GQP  G                K K+    +    A GAV G LGG  L   +     H
Sbjct: 70  WGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMSRPLIH 129

Query: 258 IADEAAEK 265
              +  ++
Sbjct: 130 FGSDYEDR 137

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 47.3 bits (111), Expect = 3e-06
 Identities = 13/96 (13%), Positives = 27/96 (28%), Gaps = 8/96 (8%)

Query: 7   VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKV--DDEGDTCPYWDETLAIPLP 64
           +++ I  A++L          R Y  L +D      T            +W E       
Sbjct: 13  LKLWIIEARELPPKK------RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNL 66

Query: 65  GPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDV 100
             V      +        ++D    +G   + +  +
Sbjct: 67  PAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATL 102

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 14/134 (10%)

Query: 7   VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP 66
           + +T+  A+ L+  + + G + PY  + V   KK  TK    G+  P W+E         
Sbjct: 19  ISITVVCAQGLQAKD-KTGSSDPYVTVQVGKTKK-RTKTI-YGNLNPVWEENFHFECHNS 75

Query: 67  VD-------DDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP 119
            D       D+   I   V    + ++   +G   +++      +         L  +  
Sbjct: 76  SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEV----RTLSGEMDVWYNLDKRTD 131

Query: 120 SGRPHGKVDVKVAV 133
                G + + ++V
Sbjct: 132 KSAVSGAIRLHISV 145

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 15/127 (11%)

Query: 7   VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP 66
           ++V +  A DL   +   G + P+ +L +  N +  T    + +  P W++    P+   
Sbjct: 15  LQVKVLKAADLLAAD-FSGKSDPFCLLELG-NDRLQTHTVYK-NLNPEWNKVFTFPIK-- 69

Query: 67  VDDDTTLIIDVVHAGNEEDTKK--LIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPH 124
            D    L + V    +E+  K    +G   + L  + +    G+     LK K       
Sbjct: 70  -DIHDVLEVTVF---DEDGDKPPDFLGKVAIPLLSIRD----GQPNCYVLKNKDLEQAFK 121

Query: 125 GKVDVKV 131
           G + +++
Sbjct: 122 GVIYLEM 128

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 11/126 (8%)

Query: 9   VTITSAKDLKNVNWRHGPNRPYAVLWVDPNK--KCSTKVDDEGDTCPYWDETLAIPLPGP 66
           V I  A DL   +  +G + PY  +++ P++  K  TKV       P ++ET    +P  
Sbjct: 24  VRILQALDLPAKD-SNGFSDPYVKIYLLPDRKKKFQTKVH-RKTLNPIFNETFQFSVPLA 81

Query: 67  VDDDTTLIIDVVHAGNEEDT---KKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP 123
                 L   V       D      LIG   L     + +          +         
Sbjct: 82  ELAQRKLHFSVYD----FDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKAD 137

Query: 124 HGKVDV 129
            G+++ 
Sbjct: 138 LGELNF 143

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 6   EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAI 61
            + VTI  A +LK ++     + PY    +       KK  T +  +    P ++E L  
Sbjct: 153 LLTVTIIKASNLKAMDLTGFSD-PYVKASLISEGRRLKKRKTSIK-KNTLNPTYNEALVF 210

Query: 62  PLPGPVDDDTTLIIDVVH 79
            +     ++  L I VV 
Sbjct: 211 DVAPESVENVGLSIAVVD 228

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 10/100 (10%)

Query: 9   VTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCS----TKVDDEGDTC-PYWDETLAIPL 63
           + I   K L +     G   PY  + + P         T+     D   P + E    P+
Sbjct: 31  LHIIEGKGLISKQ--PGTCDPYVKISLIPEDSRLRHQKTQT--VPDCRDPAFHEHFFFPV 86

Query: 64  PGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVIND 103
               DD   L++ V +  ++     LIG     +K ++  
Sbjct: 87  Q-EEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTP 125

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 19/110 (17%)

Query: 4   RYEVE-----VTITSAKDLKNVNWRHGPNRPYAVLWVDP-----NKKCSTKVDDEGDTC- 52
           +Y+ +     + I    +L  +  +         + V P          T+  D   +  
Sbjct: 37  KYDEKNKQFAILIIQLSNLSALLQQQDQK-VNIRVAVLPCSESTTCLFRTRPLD--ASDT 93

Query: 53  PYWDETLAIPLPGPVDDDTTLIIDVVHAG--NEEDTKKLIGSAKLKLKDV 100
             ++E   + +  P     TL +DV      + E+    +G A++ L +V
Sbjct: 94  LVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEE---CLGGAQISLAEV 140

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 43.4 bits (102), Expect = 5e-05
 Identities = 29/72 (40%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 146 TPPYGVPPSGSRDYPAPPPYGYPYGRPPQDPYYATAPPPSGYPYGAYNAPPAYGQPSYGA 205
                 PP G     APPP GYP    P   Y     PP GYP      PP  G P  GA
Sbjct: 383 QQQAAYPPQGY----APPPQGYPPQGYPPQGYPPQGYPPQGYP------PPPQGAPPQGA 432

Query: 206 YGAAPPGGYYGQ 217
             AAPP G   Q
Sbjct: 433 PPAAPPQGVDNQ 444

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 25/59 (42%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 139 APPGAYHTPPYGVPPSGSRDYPAPPPYGYPYGRPPQDPYYATAPPPSGYPYGAYNAPPA 197
            PP  Y  PP G PP G       PP GYP   P   P     PPP G P     APPA
Sbjct: 388 YPPQGYAPPPQGYPPQG------YPPQGYP---PQGYPPQGYPPPPQGAP--PQGAPPA 435

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 6   EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAI 61
           ++ V I  AK+LK ++     + PY  + +  N    KK  T +  +    PY++E+ + 
Sbjct: 151 KLTVVILEAKNLKKMDVGGLSD-PYVKIHLMQNGKRLKKKKTTIK-KNTLNPYYNESFSF 208

Query: 62  PLPGPVDDDTTLIIDVVH 79
            +P        +++ V+ 
Sbjct: 209 EVPFEQIQKVQVVVTVLD 226

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 11/120 (9%)

Query: 6   EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCS--TKVDDEGDTCPYWDETLAIPL 63
           ++ V I  A +L  ++   G + PY  +++ P+KK    TKV       P ++E     +
Sbjct: 20  QLLVGIIQAAELPALD-MGGTSDPYVKVFLLPDKKKKFETKVH-RKTLNPVFNEQFTFKV 77

Query: 64  PGPVDDDTTLIIDVVHAGNEEDT---KKLIGSAKLKLKDVINDVGLGERASLTLKLKRPS 120
           P       TL++ V       D      +IG  K+ +  V       E   L    K   
Sbjct: 78  PYSELAGKTLVMAVYD----FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQ 133

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 21/131 (16%)

Query: 6   EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCS----TKVDDEGDTC-PYWDETLA 60
            + V +     L   +     + PY   ++ P+K       T +  + DT  P +DETL 
Sbjct: 24  SLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSI--KRDTVNPLYDETLR 81

Query: 61  IPLPGPVDDDTTLIIDVVHAG----NEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL 116
             +P  +    TL   V H G    N       +G A++++    +   L ++    L L
Sbjct: 82  YEIPESLLAQRTLQFSVWHHGRFGRNT-----FLGEAEIQM----DSWKLDKKLDHCLPL 132

Query: 117 K-RPSGRPHGK 126
             + S    G 
Sbjct: 133 HGKISAESEGH 143

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 40.9 bits (96), Expect = 9e-05
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 10/100 (10%)

Query: 6   EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCS----TKVDDEGDTC-PYWDETLA 60
           ++EV +  A+ L           PY  +++  N  C     T++     T  P + ++L 
Sbjct: 31  QLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRI--ARKTLDPLYQQSLV 88

Query: 61  IPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDV 100
                       L + V       D K  +G A++ L+++
Sbjct: 89  FDES---PQGKVLQVIVWGDYGRMDHKCFMGVAQILLEEL 125

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 9  VTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAIPLP 64
          V I  A++LK ++     + PY  +W+       +K  T    + +  P ++E+ A  +P
Sbjct: 20 VNIIKARNLKAMDIGGTSD-PYVKVWLMYKDKRVEKKKTVTK-KRNLNPIFNESFAFDIP 77

Query: 65 GPVDDDTTLIIDVVH 79
               +TT+II V+ 
Sbjct: 78 TEKLRETTIIITVMD 92

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 14/129 (10%)

Query: 3   SRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCS----TKVDDEGDTC-PYWDE 57
            R ++ V + + ++L   +   G + PY  +++ P+K+ S    T V     T  P +D+
Sbjct: 22  QRNKLIVVVHACRNLIAFS-EDGSD-PYVRMYLLPDKRRSGRRKTHV--SKKTLNPVFDQ 77

Query: 58  TLAIPLPGPVDDDTTLIIDVVHAGN-EEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL 116
           +    +  P     TL + V ++G      K L+G   + L        L +  +    L
Sbjct: 78  SFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVAL----ASEELAKGWTQWYDL 133

Query: 117 KRPSGRPHG 125
              SG   G
Sbjct: 134 TEDSGPSSG 142

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 9   VTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAIPLP 64
           V I  AK+LK ++     + PY  + +  N    KK  T +  +    PY++E+ +  +P
Sbjct: 29  VVILEAKNLKKMDVGGLSD-PYVKIHLMQNGKRLKKKKTTIK-KNTLNPYYNESFSFEVP 86

Query: 65  GPVDDDTTLIIDVVH 79
                   +++ V+ 
Sbjct: 87  FEQIQKVQVVVTVLD 101

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 38.9 bits (90), Expect = 8e-04
 Identities = 15/75 (20%), Positives = 17/75 (22%)

Query: 139 APPGAYHTPPYGVPPSGSRDYPAPPPYGYPYGRPPQDPYYATAPPPSGYPYGAYNAPPAY 198
            P     TP      + +         G P   PP              P G    PP  
Sbjct: 136 GPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGM 195

Query: 199 GQPSYGAYGAAPPGG 213
             P     G  P  G
Sbjct: 196 RPPMGPPMGIPPGRG 210

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	277
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.86
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.85
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.85
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.84
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.84
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.83
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.83
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.82
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.82
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.81
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.8
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.8
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.77
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.76
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.76
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.76
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.75
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.75
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.75
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.74
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.74
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.74
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.74
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.74
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.73
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.73
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.73
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.73
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.73
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.72
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.72
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.72
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.72
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.72
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.72
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.71
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.68
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.68
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.65
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.59
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.58
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.55
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.46
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.46
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.44
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.36
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.32
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.31
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.27
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.22
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	99.13
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	98.44
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	97.18
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	96.74
3heq_A	142	Major prion protein; cell membrane, disease mutati	95.97
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	93.19
2lbg_A	27	Major prion protein; conserved hydrophobic region,	93.17
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	93.1
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	92.36
1tpx_A	121	Prion protein, major prion protein; antibody, unkn	90.79
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	87.23
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	86.79
1xu0_A	130	Prion protein, XLPRP; amphibian, polymorphism, gly	86.28

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.86  E-value=4.7e-21  Score=152.09  Aligned_cols=123  Identities=21%  Similarity=0.334  Sum_probs=104.3

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCC-CCCCCccceeEEEecCCCCCCCceEEEEEEEccC
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDE-GDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN   82 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~-~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~   82 (277)
                      ...|+|+|++|++|...+.. +.+||||+++++ ..+.+|++ ++ ++.||+|||+|.|.+..   ....|.|+|||++.
T Consensus         9 ~~~L~v~v~~a~~L~~~d~~-g~~dpyv~v~~~-~~~~kT~~-~~~~~~nP~Wne~f~f~v~~---~~~~l~~~V~d~~~   82 (136)
T 1wfj_A            9 HGTLEVVLVSAKGLEDADFL-NNMDPYVQLTCR-TQDQKSNV-AEGMGTTPEWNETFIFTVSE---GTTELKAKIFDKDV   82 (136)
T ss_dssp             EEEEEEEEEEEEECSSCCSS-CSSCCCEEEESS-SCEEECCC-CTTCCSSCEEEEEEEEEEES---SCCEEEEEECCSSS
T ss_pred             cEEEEEEEEeccCCCCcccC-CCcCceEEEEEC-CccceeEe-ccCCCCCCccCcEEEEEECC---CCCEEEEEEEECCC
Confidence            36899999999999988865 899999999996 45779998 55 89999999999999975   35789999999986


Q ss_pred             CCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEecC
Q 023810           83 EEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRESR  137 (277)
Q Consensus        83 ~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~~~  137 (277)
                       ..+++|||++.|+|.++...   ++....||.|. +.++..|+|+|+++|.+..
T Consensus        83 -~~~d~~lG~~~i~l~~l~~~---~~~~~~w~~L~-~~~~~~G~i~l~l~~~p~~  132 (136)
T 1wfj_A           83 -GTEDDAVGEATIPLEPVFVE---GSIPPTAYNVV-KDEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             -CTTTCCSEEEEEESHHHHHH---SEEEEEEEEEE-ETTEEEEEEEEEEEEEECC
T ss_pred             -CCCCceEEEEEEEHHHhccC---CCCCcEEEEee-cCCccCEEEEEEEEEEeCC
Confidence             46889999999999998654   23456789987 5677899999999998763

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=4.3e-20  Score=147.18  Aligned_cols=124  Identities=27%  Similarity=0.353  Sum_probs=101.3

Q ss_pred             CceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCC-CCceEEEEEEEcc
Q 023810            3 SRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVD-DDTTLIIDVVHAG   81 (277)
Q Consensus         3 ~~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l-~~~~L~v~V~d~~   81 (277)
                      ....|+|+|++|++|...+.  +.+||||+++++ ..+.+|++ ++++.||+|||+|.|.+....+ ....|.|+|||++
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~--g~~dpyv~v~~~-~~~~kT~v-~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d   80 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF--GKPDPIVSVIFK-DEKKKTKK-VDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFE   80 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS--SCCCEEEEEECS-SCEEECCC-CCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETT
T ss_pred             CCcEEEEEEEEeeCCCCCCC--CCCCeEEEEEEC-CEeEEeee-ecCCCCCccCcEEEEEecccccCCCCEEEEEEEECC
Confidence            45689999999999998874  899999999996 56789999 7889999999999999975322 3578999999999


Q ss_pred             CCCCCCceeEEEEEecceeccccCCCceeeEEEE---eecCCC-CCceEEEEEEEEEe
Q 023810           82 NEEDTKKLIGSAKLKLKDVINDVGLGERASLTLK---LKRPSG-RPHGKVDVKVAVRE  135 (277)
Q Consensus        82 ~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~---L~~~sg-~~~G~L~l~v~~~~  135 (277)
                      . .++++|||++.|+|.+|....    ....|+.   |....+ ..+|+|+|+++|.+
T Consensus        81 ~-~~~~~~lG~~~i~l~~l~~~~----~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p  133 (140)
T 2dmh_A           81 T-IGQNKLIGTATVALKDLTGDQ----SRSLPYKLISLLNEKGQDTGATIDLVIGYDP  133 (140)
T ss_dssp             C-SSSCCCCEEEEEEGGGTCSSS----CEEEEEEEEEEECTTCCEEEEEEEEEEEECC
T ss_pred             C-CCCCceEEEEEEEHHHhccCC----CceeEEeeeeccCCCCCCCCCEEEEEEEEEC
Confidence            6 468899999999999986543    2345555   655443 46799999999965

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.85  E-value=1.9e-20  Score=151.65  Aligned_cols=125  Identities=15%  Similarity=0.214  Sum_probs=96.3

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC-----CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEE
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN-----KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVV   78 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~-----~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~   78 (277)
                      ...|+|+|++|++|...+.. +++||||++++...     .+.+|++ ++++.||+|||+|.|.+..   ....|.|+||
T Consensus        19 ~~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~v~~---~~~~l~~~V~   93 (153)
T 3b7y_A           19 SRIVRVRVIAGIGLAKKDIL-GASDPYVRVTLYDPMNGVLTSVQTKT-IKKSLNPKWNEEILFRVHP---QQHRLLFEVF   93 (153)
T ss_dssp             CEEEEEEEEEEESCC--------CCEEEEEEEEETTTEEEEEEECCC-CSSCSSCCCCEEEEEEECT---TTCEEEEEEE
T ss_pred             ccEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEECCCCccceeeeCcc-ccCCCCCCCCCEEEEEecC---CCCEEEEEEE
Confidence            46899999999999988754 89999999999532     4679998 7789999999999999975   3568999999


Q ss_pred             EccCCCCCCceeEEEEEecceeccccCCC--ceeeEEEEeecC--CCCCceEEEEEEEEE
Q 023810           79 HAGNEEDTKKLIGSAKLKLKDVINDVGLG--ERASLTLKLKRP--SGRPHGKVDVKVAVR  134 (277)
Q Consensus        79 d~~~~~~~d~~iG~~~v~L~~l~~~~~~~--~~~~~~~~L~~~--sg~~~G~L~l~v~~~  134 (277)
                      |++. .++++|||++.|+|.+|.......  .....||.|...  ..+.+|+|+|+++|.
T Consensus        94 d~d~-~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~  152 (153)
T 3b7y_A           94 DENR-LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL  152 (153)
T ss_dssp             ECCS-SSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred             ECCC-CcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEe
Confidence            9986 468999999999999988764321  112478888543  456789999999985

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.84  E-value=2e-20  Score=148.02  Aligned_cols=119  Identities=16%  Similarity=0.293  Sum_probs=99.8

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE   83 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~   83 (277)
                      ...|+|+|++|++|...+.. +.+||||+++++ ..+.+|++ ++++.||+|||+|.|.+..   ....|.|+|||++. 
T Consensus        12 ~~~L~v~v~~a~~L~~~d~~-g~~dpyv~v~~~-~~~~kT~~-~~~t~nP~wne~f~f~~~~---~~~~l~i~V~d~d~-   84 (133)
T 2ep6_A           12 VGILQVKVLKAADLLAADFS-GKSDPFCLLELG-NDRLQTHT-VYKNLNPEWNKVFTFPIKD---IHDVLEVTVFDEDG-   84 (133)
T ss_dssp             SEEEEEEEEEEESCCCSSSS-SCCCEEEEEEET-TEEEECCC-CSSCSSCCCCEEEEEEESC---TTCEEEEEEEEEET-
T ss_pred             ceEEEEEEEeeECCCCCCCC-CCcCeEEEEEEC-CEEEEeee-ecCCCCCccccEEEEEecC---CCCEEEEEEEECCC-
Confidence            47899999999999988865 899999999995 56789999 7789999999999999975   24689999999986 


Q ss_pred             CCCCceeEEEEEecceeccccCCCceeeEEEEeecC--CCCCceEEEEEEEEEe
Q 023810           84 EDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP--SGRPHGKVDVKVAVRE  135 (277)
Q Consensus        84 ~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~--sg~~~G~L~l~v~~~~  135 (277)
                      .++++|||++.|+|.++....      ..|++|...  .++.+|+|+|+++|.-
T Consensus        85 ~~~~~~lG~~~i~l~~l~~~~------~~w~~L~~~~~~~~~~G~i~l~i~~~~  132 (133)
T 2ep6_A           85 DKPPDFLGKVAIPLLSIRDGQ------PNCYVLKNKDLEQAFKGVIYLEMDLIY  132 (133)
T ss_dssp             TEEEEECCBCEEEGGGCCSSC------CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             CCCCCeeEEEEEEHHHccCCC------ceEEEeecCCCCCccceEEEEEEEEEe
Confidence            467899999999999986431      367888654  3467899999999864

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.84  E-value=8.3e-21  Score=155.10  Aligned_cols=119  Identities=19%  Similarity=0.308  Sum_probs=97.1

Q ss_pred             eEEEEEEEEeeCCCCCCCC---------CCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEE
Q 023810            5 YEVEVTITSAKDLKNVNWR---------HGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLII   75 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~---------~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v   75 (277)
                      ..|+|+|++|++|...++.         .+.+||||+++++.....+|++ +++++||+|||+|.|.|..    ...|.|
T Consensus        29 g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v-~~ktlnP~WNE~F~f~v~~----~~~L~~  103 (157)
T 2fk9_A           29 GYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTST-KQKTNKPTYNEEFCANVTD----GGHLEL  103 (157)
T ss_dssp             EEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCC-CSSCSSCEEEEEEEEEEEE----ECEEEE
T ss_pred             cEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeee-cCCCCCCccCcEEEEEcCC----CCEEEE
Confidence            6899999999999876521         2568999999997545579998 7889999999999999964    358999


Q ss_pred             EEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEE
Q 023810           76 DVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVR  134 (277)
Q Consensus        76 ~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~  134 (277)
                      +|||++. .++++|||++.|+|.+|....+.+.....||+|..     +|+|.|+++|.
T Consensus       104 ~V~D~d~-~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~-----~G~i~l~l~~~  156 (157)
T 2fk9_A          104 AVFHETP-LGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP-----EGKVFVVITLT  156 (157)
T ss_dssp             EEEECCS-SSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS-----SCEEEEEEEEC
T ss_pred             EEEECCC-CCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC-----CcEEEEEEEEE
Confidence            9999986 47899999999999998865212344678999843     79999999874

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.83  E-value=5.3e-20  Score=152.69  Aligned_cols=127  Identities=14%  Similarity=0.201  Sum_probs=96.3

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC-C----CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEE
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP-N----KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVV   78 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~-~----~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~   78 (277)
                      ..+|+|+|++|++|...+.. +++||||++++.. .    .+++|++ +++++||+|||+|.|.+..   ....|.|+||
T Consensus         7 ~g~L~V~v~~a~~L~~~d~~-g~~DPyv~v~l~~~~~~~~~~~kT~v-~~~t~nP~Wne~f~f~v~~---~~~~L~~~V~   81 (176)
T 3m7f_B            7 TRVVRVKVIAGIGLAKKDIL-GASDPYVRVTLYDPMSGILTSVQTKT-IKKSLNPKWNEEILFRVLP---QRHRILFEVF   81 (176)
T ss_dssp             CEEEEEEEEEEESCC---CC-CCCCEEEEEEEEETTTEEEEEEECCC-CSSCSSCEEEEEEEEEECT---TTCEEEEEEE
T ss_pred             cEEEEEEEEEeeCCCCcCCC-CCcCcEEEEEEECCCCCcccceeCce-ECCCCCCcccceEEEEEcC---CCCEEEEEEE
Confidence            36899999999999988764 8999999999942 2    4579999 7789999999999999975   3468999999


Q ss_pred             EccCCCCCCceeEEEEEecceeccccCCC--ceeeEEEEeec--CCCCCceEEEEEEEEEec
Q 023810           79 HAGNEEDTKKLIGSAKLKLKDVINDVGLG--ERASLTLKLKR--PSGRPHGKVDVKVAVRES  136 (277)
Q Consensus        79 d~~~~~~~d~~iG~~~v~L~~l~~~~~~~--~~~~~~~~L~~--~sg~~~G~L~l~v~~~~~  136 (277)
                      |++. .++++|||++.|+|.+|.......  .....||.|..  ..++.+|+|.|+++|.+.
T Consensus        82 d~d~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           82 DENR-LTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             ECC-----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             ECCC-CCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            9986 468899999999999998664321  11236888864  356678999999999765

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.83  E-value=3.9e-20  Score=147.13  Aligned_cols=118  Identities=19%  Similarity=0.339  Sum_probs=96.7

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCC-----------CCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGP-----------NRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTL   73 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~-----------~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L   73 (277)
                      ..|+|+|++|++|...+.+ ++           +||||+++++.....+|++ +.++.||+|||+|.|.+..    ...|
T Consensus         6 g~L~v~v~~a~~L~~~d~~-~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~-~~~t~nP~WnE~f~f~v~~----~~~L   79 (136)
T 1gmi_A            6 GLLKIKICEAVSLKPTAWS-LRDAVGPRPQTFLLDPYIALNVDDSRIGQTAT-KQKTNSPAWHDEFVTDVCN----GRKI   79 (136)
T ss_dssp             EEEEEEEEEEESCCCCHHH-HCC-CCSSCCCCCCCEEEEEEETTEEEEECCC-CSSCSSCEEEEEEEEEEEE----ECEE
T ss_pred             eEEEEEEEeCcCCCCcccc-cccccccccCCcCcCcEEEEEECCeEeeeeeE-ECCCcCCccCCEEEEEecC----CCEE
Confidence            6899999999999977643 33           8999999997555568888 7789999999999999965    2689


Q ss_pred             EEEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEec
Q 023810           74 IIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRES  136 (277)
Q Consensus        74 ~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~~  136 (277)
                      .|+|||++. .++++|||++.|+|.++....  ......|+.|.     .+|+|.|+++|...
T Consensus        80 ~~~V~d~d~-~~~dd~iG~~~i~l~~l~~~~--~~~~~~w~~L~-----~~G~i~l~l~~~~~  134 (136)
T 1gmi_A           80 ELAVFHDAP-IGYDDFVANCTIQFEELLQNG--SRHFEDWIDLE-----PEGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEEEECCS-SSSCEEEEEEEEEHHHHTSTT--CSEEEEEEECB-----SSCEEEEEEEEEEE
T ss_pred             EEEEEeCCC-CCCCCEEEEEEEEHHHhcccC--CCCccEEEEcC-----CCeEEEEEEEEEec
Confidence            999999996 468899999999999988653  12346788874     37999999999753

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.82  E-value=4e-19  Score=142.99  Aligned_cols=118  Identities=16%  Similarity=0.392  Sum_probs=98.3

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCC-
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE-   83 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~-   83 (277)
                      ..|+|+|++|++|...+.. +.+||||+++++ ..+.+|++ +.++.||.|||+|.|.+..   ....|.|+|||++.. 
T Consensus        17 ~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~-~~~~kT~~-~~~t~nP~Wne~f~f~v~~---~~~~l~~~v~d~d~~~   90 (148)
T 3kwu_A           17 AKISITVVCAQGLQAKDKT-GSSDPYVTVQVG-KTKKRTKT-IYGNLNPVWEENFHFECHN---SSDRIKVRVLDEDDDI   90 (148)
T ss_dssp             EEEEEEEEEEESCCCCSTT-SCCCEEEEEEET-TEEEECCC-CCSCSSCEEEEEEEEEECS---TTCEEEEEEEECCCSH
T ss_pred             cEEEEEEEeeeCCCCCCCC-CCcCeEEEEEEC-CEEEECCc-cCCCCCCCcccEEEEEecC---CCCEEEEEEEECCCCc
Confidence            5899999999999988754 899999999995 67889999 7889999999999999975   246899999999852 


Q ss_pred             ---------CCCCceeEEEEEecceeccccCCCceeeEEEEeecC--CCCCceEEEEEEEEE
Q 023810           84 ---------EDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP--SGRPHGKVDVKVAVR  134 (277)
Q Consensus        84 ---------~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~--sg~~~G~L~l~v~~~  134 (277)
                               .+.++|||++.|+|.++..      ....||.|...  ..+.+|+|.|+++|.
T Consensus        91 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~------~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           91 KSRVKQRFKRESDDFLGQTIIEVRTLSG------EMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHHHHTTTSSCSSEEEEEEEEEGGGCCS------EEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             cccccccccCCCCccEEEEEEEHHHCcC------CCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                     1578999999999999832      24578888643  345689999999985

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.82  E-value=2e-19  Score=142.07  Aligned_cols=121  Identities=18%  Similarity=0.267  Sum_probs=95.8

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC-CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccC
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP-NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN   82 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~-~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~   82 (277)
                      ...|+|+|++|++|...+.. +.+||||+++++. ..+.+|++ +++++||+|||+|.|.+..    ...|.|+|||++.
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~-g~sDpyv~v~~~~~~~~~kT~v-~~~t~nP~wne~f~f~v~~----~~~l~~~v~d~d~   77 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFF-RLPDPFAKIVVDGSGQCHSTDT-VKNTLDPKWNQHYDLYVGK----TDSITISVWNHKK   77 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTT-CCCCEEEEEEETTTCCEEECCC-CSSCSSCEEEEEEEEEEET----TCCEEEEEEEGGG
T ss_pred             eEEEEEEEEEeECCCCCCCC-CCcCeEEEEEECCCCceEECCc-cCCCCCCCccCEEEEEeCC----CCEEEEEEEECCC
Confidence            35799999999999988865 8999999999964 47789999 7899999999999999965    2359999999986


Q ss_pred             CCCC---CceeEEEEEecceeccccCCCceeeEEEEeecC----CCCCceEEEEEEEEE
Q 023810           83 EEDT---KKLIGSAKLKLKDVINDVGLGERASLTLKLKRP----SGRPHGKVDVKVAVR  134 (277)
Q Consensus        83 ~~~~---d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~----sg~~~G~L~l~v~~~  134 (277)
                      + .+   ++|||++.|+|.+|......+   ..+++|...    ..+.+|+|.|+++.+
T Consensus        78 ~-~~~~~d~~lG~~~i~l~~l~~~~~~~---~~~~~L~~~~~~~~~~~~G~i~v~l~~r  132 (132)
T 3pyc_A           78 I-HKKQGAGFLGCVRLLSNAISRLKDTG---YQRLDLCKLNPSDTDAVRGQIVVSLQTR  132 (132)
T ss_dssp             T-TSSTTTTEEEEEEECHHHHHHHTTSC---CEEEECBCSSTTCCCCCCSEEEEEEEEC
T ss_pred             C-CCCCCCCceEEEEEeHHHhhcccccC---cEEEeeeecCCCCCCceeEEEEEEEEcC
Confidence            4 33   789999999999885443222   345666443    234689999999863

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.81  E-value=2.7e-19  Score=148.41  Aligned_cols=125  Identities=19%  Similarity=0.253  Sum_probs=100.2

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      ..|+|+|++|++|...... +.+||||+++++. .+.+|++ +++++||+|||+|.|.+..    ...|.|+|||++. .
T Consensus        36 ~~L~V~V~~A~~L~~~~~~-~~sDPYv~v~~~~-~~~kT~v-~~~tlnP~Wne~f~f~v~~----~~~L~~~V~D~d~-~  107 (173)
T 2nq3_A           36 SQLQITVISAKLKENKKNW-FGPSPYVEVTVDG-QSKKTEK-CNNTNSPKWKQPLTVIVTP----VSKLHFRVWSHQT-L  107 (173)
T ss_dssp             EEEEEEEEEEEECCCC--C-CCCCEEEEEEETT-EEEECCC-CSSCSSCEEEEEEEEEECT----TCEEEEEEEECCS-S
T ss_pred             eEEEEEEEEeECCCCcccC-CCCCeEEEEEECC-EEeEccc-cCCCCCCeECCEEEEEeCC----CCEEEEEEEECCC-C
Confidence            5799999999999843323 4599999999964 7889999 7789999999999999953    5789999999996 4


Q ss_pred             CCCceeEEEEEecceeccccCCC-ceeeEEEEeecC--CCCCceEEEEEEEEEecC
Q 023810           85 DTKKLIGSAKLKLKDVINDVGLG-ERASLTLKLKRP--SGRPHGKVDVKVAVRESR  137 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~~~~~~-~~~~~~~~L~~~--sg~~~G~L~l~v~~~~~~  137 (277)
                      +.++|||++.|+|.+|....... +...+|++|...  ..+..|+|.|++++..-+
T Consensus       108 ~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~~  163 (173)
T 2nq3_A          108 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQLE  163 (173)
T ss_dssp             SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEECC
T ss_pred             CCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeecc
Confidence            68899999999999987653211 223678888664  345689999999988653

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.80  E-value=6.3e-19  Score=137.81  Aligned_cols=116  Identities=16%  Similarity=0.322  Sum_probs=91.2

Q ss_pred             ceEEEEEEEEeeCCCCC---CCCCCCCCcEEEEEECC--CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEE
Q 023810            4 RYEVEVTITSAKDLKNV---NWRHGPNRPYAVLWVDP--NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVV   78 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~---~~~~g~~dpYv~v~ld~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~   78 (277)
                      ...|+|+|++|++|...   +.. +++||||++++.+  ..+.+|++ ++++.||+|||+|.|.+...  +...|.|+||
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~-g~~dpyv~v~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~   77 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDML-DTPDPYVELFISTTPDSRKRTRH-FNNDINPVWNETFEFILDPN--QENVLEITLM   77 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHH-CCCCEEEEEECTTSTTCCEECCC-CTTCSSCEEEEEEEEEECTT--SCCEEEEEEE
T ss_pred             CcEEEEEEEeeeCCCCCCccccC-CCCCCEEEEEEccCCCceEEccc-cCCCCCCcccceEEEEecCC--CCCEEEEEEE
Confidence            46899999999999873   433 7899999999964  47789999 77899999999999999642  3578999999


Q ss_pred             EccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEE
Q 023810           79 HAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVA  132 (277)
Q Consensus        79 d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~  132 (277)
                      |++..  ++++||++.|+|.+|..    +.....|+.|..   ..+|+|.|++.
T Consensus        78 d~d~~--~~~~iG~~~i~l~~l~~----~~~~~~~~~L~~---~~~g~i~~~le  122 (126)
T 1rlw_A           78 DANYV--MDETLGTATFTVSSMKV----GEKKEVPFIFNQ---VTEMVLEMSLE  122 (126)
T ss_dssp             ECCSS--CCEEEEEEEEEGGGSCT----TCEEEEEEEETT---TEEEEEEEEEE
T ss_pred             ECCCC--CCceeEEEEEEHHHccC----CCcEEEEEEcCC---CceEEEEEEEE
Confidence            99863  58899999999999864    344578898843   23444444443

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.80  E-value=3.1e-19  Score=141.46  Aligned_cols=120  Identities=15%  Similarity=0.165  Sum_probs=85.4

Q ss_pred             CCCceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            1 MASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         1 m~~~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      |+.. .|+|+|++|++|..    ++.+||||+++.   .+.+|++..+++.||+|||+|.|.+..   ....|.|+|||+
T Consensus         2 ~~~~-~L~V~V~~A~~l~~----~g~~DPYv~v~~---~~~kt~~~~~~t~nP~WnE~f~f~v~~---~~~~L~~~V~D~   70 (131)
T 2cjt_A            2 GVMS-LLCVGVKKAKFDGA----QEKFNTYVTLKV---QNVKSTTIAVRGSQPSWEQDFMFEINR---LDLGLTVEVWNK   70 (131)
T ss_dssp             CCCE-EEEEEEEEEECSSC----GGGCEEEEEEEE---TTEEEECCCEESSSCEEEEEEEEEECC---CSSEEEEEEEEC
T ss_pred             Ccce-EEEEEEEEeECCCC----CCCcCeEEEEEe---cCEEEeEecCCCCCceECCEEEEEEeC---CCCeEEEEEEEC
Confidence            5554 89999999998852    378999999993   234555534578999999999999975   245799999999


Q ss_pred             cCCCCCCceeEEEEEecceeccccCCC--ceeeEEEEeecCCCCCceE-------EEEEEEE
Q 023810           81 GNEEDTKKLIGSAKLKLKDVINDVGLG--ERASLTLKLKRPSGRPHGK-------VDVKVAV  133 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~--~~~~~~~~L~~~sg~~~G~-------L~l~v~~  133 (277)
                      + + ..|+|||++.|+|++|......+  .|..+++.+..++++.+|+       |.++++|
T Consensus        71 d-~-~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~  130 (131)
T 2cjt_A           71 G-L-IWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF  130 (131)
T ss_dssp             C-S-SCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             C-C-CCCCeEEEEEEEHHHhhhcCCCCccccEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence            8 4 68999999999999987654323  4556677766667776666       8888776

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.77  E-value=5.1e-18  Score=134.97  Aligned_cols=110  Identities=17%  Similarity=0.224  Sum_probs=88.8

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC--CCCeEEeeecCCCCCCCccceeEEEe-cCCCCCCCceEEEEEEEc
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD--PNKKCSTKVDDEGDTCPYWDETLAIP-LPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld--~~~~~~T~v~~~~~~nP~WnE~f~f~-v~~~~l~~~~L~v~V~d~   80 (277)
                      ...|+|+|++|++|...+...+.+||||++++.  ...+.+|++ ++++.||+|||+|.|. +....+....|.|+|||+
T Consensus        21 ~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~   99 (138)
T 1ugk_A           21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRV-LRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF   99 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCC-CSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCc-CcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEEC
Confidence            357999999999999877533789999999994  346889999 7789999999999996 765444557899999999


Q ss_pred             cCCCCCCceeEEEEEecceeccccCCCceeeEEEEeec
Q 023810           81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR  118 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~  118 (277)
                      +. ..+++|||++.|+|.+|....   .....|+.|..
T Consensus       100 d~-~~~~~~lG~~~i~l~~l~~~~---~~~~~~~~l~~  133 (138)
T 1ugk_A          100 DR-FSRDDIIGEVLIPLSGIELSE---GKMLMNREIIS  133 (138)
T ss_dssp             CS-SCCCCCCEEEEEECTTCCCTT---CCEEEEEECBS
T ss_pred             CC-CCCCcEEEEEEEehhHccCCC---Ccchhhhhhhc
Confidence            86 468899999999999987652   23456777754

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.76  E-value=2.8e-18  Score=137.22  Aligned_cols=107  Identities=22%  Similarity=0.320  Sum_probs=88.5

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEcc
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAG   81 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~   81 (277)
                      ...|+|+|++|++|...+.. +.+||||++++  +...+.+|++ ++++.||+|||+|.|.+....+....|.|+|||++
T Consensus        33 ~~~L~v~v~~a~~L~~~d~~-g~~dpyv~v~l~~~~~~~~kT~v-~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  110 (143)
T 3f04_A           33 NNQLLVGIIQAAELPALDMG-GTSDPYVKVFLLPDKKKKFETKV-HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  110 (143)
T ss_dssp             TTEEEEEEEEEECCCCBGGG-BCCCEEEEEEEESCCSCCEECCC-CCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCEEEEEEEEecCCCCCCCC-CCcCcEEEEEEECCCCccEECcc-CcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCC
Confidence            35899999999999987754 89999999999  3356789999 78899999999999998753344578999999999


Q ss_pred             CCCCCCceeEEEEEecceeccccCCCceeeEEEEee
Q 023810           82 NEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLK  117 (277)
Q Consensus        82 ~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~  117 (277)
                      . ..+++|||++.|+|.++...    .....|+.|.
T Consensus       111 ~-~~~~~~iG~~~i~l~~l~~~----~~~~~W~~L~  141 (143)
T 3f04_A          111 R-FSKHDIIGEFKVPMNTVDFG----HVTEEWRDLQ  141 (143)
T ss_dssp             S-SSCCEEEEEEEEEGGGCCTT----SCEEEEEECB
T ss_pred             C-CCCCceEEEEEEEHHHccCC----CCcceEEECc
Confidence            6 46889999999999998653    2356788874

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.76  E-value=4.5e-18  Score=137.63  Aligned_cols=107  Identities=21%  Similarity=0.291  Sum_probs=88.6

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC--CCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD--PNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN   82 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld--~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~   82 (277)
                      ..|+|+|++|++|...+.. +.+||||++++.  ...+.+|++ ++++.||+|||+|.|.|....+....|.|+|||++.
T Consensus        42 ~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  119 (152)
T 1rsy_A           42 NQLLVGIIQAAELPALDMG-GTSDPYVKVFLLPDKKKKFETKV-HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  119 (152)
T ss_dssp             TEEEEEEEEEESCCCCSTT-SCCCEEEEEEEETTCCSCEECCC-CTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CEEEEEEEEeECCCCccCC-CCcCeEEEEEEEcCCCceEeccc-cCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCC
Confidence            5899999999999988754 899999999993  346789999 778999999999999986533345789999999996


Q ss_pred             CCCCCceeEEEEEecceeccccCCCceeeEEEEeec
Q 023810           83 EEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR  118 (277)
Q Consensus        83 ~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~  118 (277)
                       ..+++|||++.|+|.++...    .....||.|..
T Consensus       120 -~~~~~~iG~~~i~l~~l~~~----~~~~~W~~L~~  150 (152)
T 1rsy_A          120 -FSKHDIIGEFKVPMNTVDFG----HVTEEWRDLQS  150 (152)
T ss_dssp             -SSCCEEEEEEEEEGGGCCCS----SCEEEEEECBC
T ss_pred             -CCCCcEEEEEEEEchhccCC----CCcceEEECCC
Confidence             46889999999999998543    33567888854

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=5.3e-18  Score=135.34  Aligned_cols=109  Identities=20%  Similarity=0.274  Sum_probs=89.1

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC--CCCeEEeeecCCCCCCCccceeEEEecCC-CCCCCceEEEEEEEc
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD--PNKKCSTKVDDEGDTCPYWDETLAIPLPG-PVDDDTTLIIDVVHA   80 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld--~~~~~~T~v~~~~~~nP~WnE~f~f~v~~-~~l~~~~L~v~V~d~   80 (277)
                      ...|+|+|++|++|...+.. +.+||||++++.  ...+.+|++ ++++.||+|||+|.|.+.. ..+....|.|+|||+
T Consensus        25 ~~~L~v~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~  102 (141)
T 2d8k_A           25 ESTLTVKIMKAQELPAKDFS-GTSDPFVKIYLLPDKKHKLETKV-KRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDY  102 (141)
T ss_dssp             SCCEEEEEEEEESCCCCSSS-SCCCEEEEEEEESCCSSEEECCC-CTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEEC
T ss_pred             CCEEEEEEEEeECCCCCCCC-CCCCcEEEEEEECCCCccEeCce-EcCCCCCccccEEEECccCHHHcccCEEEEEEEEC
Confidence            35799999999999988754 899999999993  356789999 7889999999999999532 223457899999999


Q ss_pred             cCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecC
Q 023810           81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP  119 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~  119 (277)
                      +. ..+++|||++.|+|.++....    ....||.|...
T Consensus       103 d~-~~~~~~iG~~~i~l~~l~~~~----~~~~W~~L~~~  136 (141)
T 2d8k_A          103 DR-FSRNDPIGEVSIPLNKVDLTQ----MQTFWKDLKPS  136 (141)
T ss_dssp             CS-SSSCEEEEEEEEETTTSCTTS----CEEEEECCEEC
T ss_pred             CC-CCCCcEEEEEEEEhhhhcCCC----CccEEEECcCC
Confidence            96 468899999999999987642    35678988654

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.75  E-value=6.8e-18  Score=133.95  Aligned_cols=106  Identities=20%  Similarity=0.238  Sum_probs=86.7

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--C--CCCeEEeeecCCCCCCCccceeEEEe-cCCCCCCCceEEEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV--D--PNKKCSTKVDDEGDTCPYWDETLAIP-LPGPVDDDTTLIIDVVH   79 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d--~~~~~~T~v~~~~~~nP~WnE~f~f~-v~~~~l~~~~L~v~V~d   79 (277)
                      ..|+|+|++|++|.. +. ++.+||||++++  +  ...+.+|++ ++++.||+|||+|.|. +....+....|.|+|||
T Consensus        20 ~~L~V~V~~a~~L~~-~~-~g~~DPyv~v~l~~~~~~~~~~kT~v-~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d   96 (134)
T 2b3r_A           20 GTLFIMVMHIKDLVT-ED-GADPNPYVKTYLLPDTHKTSKRKTKI-SRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLS   96 (134)
T ss_dssp             TEEEEEEEEEECCCC-TT-SCCCCEEEEEEEESCSSSCCCEECCC-CCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEE
T ss_pred             CEEEEEEEEeeCCCC-CC-CCCCCeEEEEEEEcCCCCCceecCCc-CcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEE
Confidence            589999999999986 43 388999999999  2  245689999 7789999999999999 76433445789999999


Q ss_pred             ccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeec
Q 023810           80 AGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR  118 (277)
Q Consensus        80 ~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~  118 (277)
                      ++. .++++|||++.|+|.++...    .....||.|..
T Consensus        97 ~d~-~~~~~~lG~~~i~l~~l~~~----~~~~~W~~L~~  130 (134)
T 2b3r_A           97 AES-LRENFFLGGITLPLKDFNLS----KETVKWYQLTA  130 (134)
T ss_dssp             CCS-SSCCEEEEEEEEEGGGSCTT----SCEEEEEECBC
T ss_pred             CCC-CCCCcEEEEEEEEhhhccCC----CCcceeEECCC
Confidence            996 46789999999999998653    23568898854

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.75  E-value=5.8e-18  Score=134.70  Aligned_cols=112  Identities=22%  Similarity=0.281  Sum_probs=89.3

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC----CCCeEEeeecCCCCCCCccceeEEEec-CCCCCCCceEEEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD----PNKKCSTKVDDEGDTCPYWDETLAIPL-PGPVDDDTTLIIDVVH   79 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld----~~~~~~T~v~~~~~~nP~WnE~f~f~v-~~~~l~~~~L~v~V~d   79 (277)
                      ..|+|+|++|++|...+.. +.+||||++++.    ...+.+|++ ++++.||+|||+|.|.+ ....+....|.|+|||
T Consensus        21 ~~L~v~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~~kT~~-~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d   98 (141)
T 1v27_A           21 HQLIVTILGAKDLPSREDG-RPRNPYVKIYFLPDRSDKNKRRTKT-VKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD   98 (141)
T ss_dssp             TEEEEEEEEEESCCCCSSS-CCCCEEEECCCSSCCSSSSCCBCCC-CSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEE
T ss_pred             CEEEEEEEEccCCCCcCCC-CCCCCEEEEEEecCCCCCcceeCcc-ccCCCCCccccEEEEccCCHHHhcCCEEEEEEEE
Confidence            5799999999999988854 889999999993    245789999 77899999999999994 4333445789999999


Q ss_pred             ccCCCCC--CceeEEEEEecceeccccCCCceeeEEEEeecC-CCCCc
Q 023810           80 AGNEEDT--KKLIGSAKLKLKDVINDVGLGERASLTLKLKRP-SGRPH  124 (277)
Q Consensus        80 ~~~~~~~--d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~-sg~~~  124 (277)
                      ++.+ ..  ++|||++.|+|.++...   .  ...||.|... +++..
T Consensus        99 ~d~~-~~~~~~~lG~~~i~l~~l~~~---~--~~~W~~L~~~~~g~~s  140 (141)
T 1v27_A           99 QARV-REEESEFLGEILIELETALLD---D--EPHWYKLQTHDSGPSS  140 (141)
T ss_dssp             BCSS-SSCCBCCCEEEEEEGGGCCCS---S--EEEEEECBCCSSCCCC
T ss_pred             CCCC-cCCCCceEEEEEEEccccCCC---C--CCceEECcccccCCCC
Confidence            9864 44  89999999999998653   1  5689998653 34433

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.75  E-value=3.9e-18  Score=138.25  Aligned_cols=118  Identities=18%  Similarity=0.213  Sum_probs=91.5

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEE
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVH   79 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d   79 (277)
                      ...|+|+|++|++|...+ . +.+||||++++.+    ..+.+|++ ++++.||+|||+|.|.+....+. ..|.|+|||
T Consensus        26 ~~~L~V~v~~a~~L~~~d-~-g~~Dpyv~v~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~v~~~~~~-~~L~i~V~d  101 (153)
T 3fbk_A           26 DRVLLLHIIEGKGLISKQ-P-GTCDPYVKISLIPEDSRLRHQKTQT-VPDCRDPAFHEHFFFPVQEEDDQ-KRLLVTVWN  101 (153)
T ss_dssp             SSEEEEEEEEEESCCCCS-S-SCCCEEEEEEEESCSCCTTCEECCC-CTTCSSCEEEEEEEEECCGGGTT-SEEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCC-C-CCCCEEEEEEEEcCCCCccEEeccc-cCCCCCCccccEEEEecccHHhC-CEEEEEEEe
Confidence            358999999999999887 4 8999999999932    35689999 78899999999999999654443 459999999


Q ss_pred             ccCCCCC-CceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEE
Q 023810           80 AGNEEDT-KKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDV  129 (277)
Q Consensus        80 ~~~~~~~-d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l  129 (277)
                      .+.+ .+ ++|||++.|+|.+|...   +.....||.|........+.|.+
T Consensus       102 ~d~~-~~~d~~lG~~~i~l~~l~~~---~~~~~~W~~L~~~~~g~~~~lkv  148 (153)
T 3fbk_A          102 RASQ-SRQSGLIGCMSFGVKSLLTP---DKEISGWYYLLGEHLGRTKHLKV  148 (153)
T ss_dssp             CCSS-GGGCEEEEEEEEEHHHHTC-----CCEEEEEECBCTTGGGTCCCBC
T ss_pred             CCCC-CCCCcEEEEEEEEHHHhcCC---CCccccEEECCChhhccccccee
Confidence            9864 44 89999999999998752   23356899997654433344433

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.74  E-value=1.3e-18  Score=141.74  Aligned_cols=108  Identities=18%  Similarity=0.234  Sum_probs=87.8

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC---C--CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEE
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP---N--KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVV   78 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~---~--~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~   78 (277)
                      ...|+|+|++|++|...+.. +.+||||++++.+   .  .+++|++ +++++||+|||+|.|.|....+....|.|+||
T Consensus        42 ~~~L~V~Vi~a~~L~~~d~~-g~sDPyVkv~l~~~~~~~~~~~kT~v-~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~  119 (155)
T 2z0u_A           42 NKQFAILIIQLSNLSALLQQ-QDQKVNIRVAVLPCSESTTCLFRTRP-LDASDTLVFNEVFWVSMSYPALHQKTLRVDVC  119 (155)
T ss_dssp             TTEEEEEEEEEECGGGTCCS-CCSEEEEEEEEESCSCHHHHEEECCC-EECCSSEEEEEEEEEECCHHHHHHCEEEEEEE
T ss_pred             CCEEEEEEEEccCcCCcccC-CCCCEEEEEEEecCCCCCccceeCCc-CCCCCCCccccEEEEEcCHHHhCcCEEEEEEE
Confidence            35899999999999988754 8999999999943   2  3689999 78899999999999998753344568999999


Q ss_pred             EccCCCCCCceeEEEEEecceeccccCCCceeeEEEEee
Q 023810           79 HAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLK  117 (277)
Q Consensus        79 d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~  117 (277)
                      |++. .++++|||++.|+|.++...   +.....||.|.
T Consensus       120 d~d~-~~~~d~iG~~~i~l~~l~~~---~~~~~~W~~L~  154 (155)
T 2z0u_A          120 TTDR-SHLEECLGGAQISLAEVCRS---GERSTRWYNLL  154 (155)
T ss_dssp             EECT-TSCEEEEEEEEEECTTSCTT---CCCEEEEEEEB
T ss_pred             ECCC-CCCCcEEEEEEEEHHHccCC---CCccccceEcc
Confidence            9997 47899999999999998532   23356788874

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.74  E-value=2.4e-17  Score=135.88  Aligned_cols=119  Identities=15%  Similarity=0.169  Sum_probs=91.0

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      ..|.|+|++|++|..    ++++||||+++.   .+.+|++..+++.||+|||+|.|.+..   ....|.|+|||++ + 
T Consensus        14 ~~L~V~V~~A~~l~~----~g~~DPYV~v~~---~~~kt~~~~~~t~nP~WnE~f~f~v~~---~~~~L~~~V~D~d-~-   81 (167)
T 2cjs_A           14 SLLCVGVKKAKFDGA----QEKFNTYVTLKV---QNVESTTIAVRGSQPSWEQDFMFEINR---LDLGLTVEVWNKG-L-   81 (167)
T ss_dssp             CEEEEEEEEEECSSC----GGGCEEEEEEEE---TTEEEECCCEESSSCEEEEEEEEECCC---TTSEEEEEEEECC-S-
T ss_pred             EEEEEEEEEEECCCC----CCCCCeEEEEEe---cceEEEEecCCCCCCCCCCEEEEEeeC---CCCEEEEEEEECC-C-
Confidence            589999999998842    378999999993   234566634468999999999999975   2457999999998 4 


Q ss_pred             CCCceeEEEEEecceeccccCCC--ceeeEEEEeecCCCCCceE-------EEEEEEEEe
Q 023810           85 DTKKLIGSAKLKLKDVINDVGLG--ERASLTLKLKRPSGRPHGK-------VDVKVAVRE  135 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~~~~~~--~~~~~~~~L~~~sg~~~G~-------L~l~v~~~~  135 (277)
                      ..|+|||++.|+|.++......+  .|..+++.+..++++.+|+       |.++++|..
T Consensus        82 ~~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e~  141 (167)
T 2cjs_A           82 IWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFEL  141 (167)
T ss_dssp             SCCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEC
T ss_pred             CCCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEeec
Confidence            68999999999999987654323  4667788876666665554       667777744

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.74  E-value=7.6e-18  Score=135.62  Aligned_cols=109  Identities=21%  Similarity=0.330  Sum_probs=89.1

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|+|++|++|...+..++.+||||++++.+    ..+.+|++ ++++.||+|||+|.|.|....+....|.|+|||.
T Consensus        23 ~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~  101 (148)
T 3fdw_A           23 QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSI-KRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHH  101 (148)
T ss_dssp             TEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCC-CSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEE
T ss_pred             CEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCcccccc-CCCCCCCcEeeEEEEEeChhHhCceEEEEEEEEC
Confidence            579999999999997763348899999999943    23789999 7889999999999999977555556799999999


Q ss_pred             cCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecC
Q 023810           81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP  119 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~  119 (277)
                      +. .++++|||++.|+|.++....    ....||.|..+
T Consensus       102 d~-~~~~~~iG~~~i~l~~l~~~~----~~~~W~~L~~~  135 (148)
T 3fdw_A          102 GR-FGRNTFLGEAEIQMDSWKLDK----KLDHCLPLHGK  135 (148)
T ss_dssp             CG-GGCEEEEEEEEEEHHHHHHHC----CSEEEEECBCC
T ss_pred             CC-CcCCcEEEEEEEEcccccccC----CccceEECcCc
Confidence            86 468899999999999986542    24578998654

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=4.2e-18  Score=136.01  Aligned_cols=112  Identities=20%  Similarity=0.266  Sum_probs=87.3

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC--CC--CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEE
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD--PN--KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVH   79 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld--~~--~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d   79 (277)
                      ...|+|+|++|++|...+.. + +||||++++.  ..  .+.+|++ ++++.||+|||+|.|.|....+....|.|+|||
T Consensus        23 ~~~L~v~v~~a~~L~~~d~~-g-~dpyv~v~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d   99 (142)
T 2dmg_A           23 RNKLIVVVHACRNLIAFSED-G-SDPYVRMYLLPDKRRSGRRKTHV-SKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKN   99 (142)
T ss_dssp             TTEEEEEEEEEECCCCSSTT-C-CCEEEEEEEESCCCSSSCEECCC-CCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEE
T ss_pred             CCEEEEEEEEeECCCCCCCC-C-CCeeEEEEEEcCCCCCCcccCCc-cCCCCCCCcCceEEEEecHHHhCcCEEEEEEEE
Confidence            35799999999999988865 7 9999999993  22  5789999 778999999999999986433334589999999


Q ss_pred             ccCCCC-CCceeEEEEEecceeccccCCCceeeEEEEeecCCCC
Q 023810           80 AGNEED-TKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGR  122 (277)
Q Consensus        80 ~~~~~~-~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~  122 (277)
                      ++.+.. .++|||++.|+|.++....    ....|+.|...+..
T Consensus       100 ~d~~~~~~~~~iG~~~i~l~~~~~~~----~~~~W~~L~~~~~~  139 (142)
T 2dmg_A          100 SGGFLSKDKGLLGKVLVALASEELAK----GWTQWYDLTEDSGP  139 (142)
T ss_dssp             CCCSSCCSCCCCEEEEEECCCSTTTT----CBCCBCCCBCSCSC
T ss_pred             CCCccccCCcEEEEEEEecccccccc----cccceeeccCCCCC
Confidence            986433 3579999999999886542    23567878655443

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.74  E-value=1.9e-17  Score=133.42  Aligned_cols=105  Identities=22%  Similarity=0.283  Sum_probs=87.3

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|+|++|++|...+.. +.+||||++++..    ..+.+|++ ++++.||+|||+|.|.+....+ ...|.|+|||+
T Consensus        31 ~~L~v~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~v~~~~~-~~~L~i~V~d~  107 (149)
T 1a25_A           31 EVLIVVVRDAKNLVPMDPN-GLSDPYVKLKLIPDPKSESKQKTKT-IKCSLNPEWNETFRFQLKESDK-DRRLSVEIWDW  107 (149)
T ss_dssp             SEEEEEEEEEESCCCCSTT-SCCCEEEEEEEESCTTCSSCEECCC-CSSCSSCEEEEEEEEECCSGGG-GCEEEEEEEEC
T ss_pred             CEEEEEEEEeeCCCCCCCC-CCcCeEEEEEEECCCCCcceEecce-eCCCCCCcCCcEEEEEeccccC-CCEEEEEEEEC
Confidence            4799999999999988754 8999999999943    45789999 7789999999999999975322 35799999999


Q ss_pred             cCCCCCCceeEEEEEecceeccccCCCceeeEEEEeec
Q 023810           81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR  118 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~  118 (277)
                      +. ..+++|||++.|+|.+|....     ...||.|..
T Consensus       108 d~-~~~~~~iG~~~i~l~~l~~~~-----~~~W~~L~~  139 (149)
T 1a25_A          108 DL-TSRNDFMGSLSFGISELQKAG-----VDGWFKLLS  139 (149)
T ss_dssp             CS-SSCCEEEEEEEEEHHHHTTCC-----EEEEEECBC
T ss_pred             CC-CCCCCEEEEEEEEHHHhCcCc-----cCCeEEccC
Confidence            96 468899999999999987541     467898854

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.73  E-value=7.6e-18  Score=134.51  Aligned_cols=108  Identities=28%  Similarity=0.413  Sum_probs=86.6

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEe-cCCCCCCCceEEEEEE
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIP-LPGPVDDDTTLIIDVV   78 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~-v~~~~l~~~~L~v~V~   78 (277)
                      ...|+|+|++|++|...+.. +.+||||++++.+    ..+.+|++ ++++.||+|||+|.|. +....+....|.|+||
T Consensus        28 ~~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~  105 (142)
T 2chd_A           28 NSNLQCTIIRAKGLKPMDSN-GLADPYVKLHLLPGASKSNKLRTKT-LRNTRNPVWNETLQYHGITEEDMQRKTLRISVC  105 (142)
T ss_dssp             GTEEEEEEEEEESCCCCCTT-SCCCEEEEEEEESCCSGGGEEECCC-CCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCCCCC-CCCCCEEEEEEEcCCCCcceeeCCc-CCCCCCCcCcCEEEEcccCHHHccCCEEEEEEE
Confidence            35899999999999988754 8999999999943    36789999 7789999999999998 6432222368999999


Q ss_pred             EccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeec
Q 023810           79 HAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR  118 (277)
Q Consensus        79 d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~  118 (277)
                      |++. .++++|||++.|+|.++....    ....|+.|.+
T Consensus       106 d~d~-~~~d~~iG~~~i~l~~l~~~~----~~~~~~~L~~  140 (142)
T 2chd_A          106 DEDK-FGHNEFIGETRFSLKKLKANQ----RKNFNICLER  140 (142)
T ss_dssp             EECT-TSCEEEEEEEEEEGGGCCTTC----CEEEEEECBC
T ss_pred             ECCC-CCCCcEEEEEEEEHHHcCCCC----ccEEEEeccc
Confidence            9986 467899999999999987542    3456676654

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.73  E-value=1.5e-17  Score=130.36  Aligned_cols=105  Identities=22%  Similarity=0.260  Sum_probs=82.2

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC----CCCeEEeeecCCCCCCCccceeEEEec-CCCCCCCceEEEEEE
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD----PNKKCSTKVDDEGDTCPYWDETLAIPL-PGPVDDDTTLIIDVV   78 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld----~~~~~~T~v~~~~~~nP~WnE~f~f~v-~~~~l~~~~L~v~V~   78 (277)
                      ...|+|+|++|++|...+.. +.+||||++++.    ...+.+|++ ++++.||+|||+|.|.+ ....+....|.|+||
T Consensus        17 ~~~L~v~v~~a~~L~~~d~~-~~~dpyv~v~~~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~   94 (129)
T 2bwq_A           17 GHQLIVTILGAKDLPSREDG-RPRNPYVKIYFLPDRSDKNKRRTKT-VKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   94 (129)
T ss_dssp             TTEEEEEEEEEESCCCCTTS-CCBCEEEEEEEESSCSGGGEEECCC-CSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCCC-CCCCCEEEEEEecCCCCCcceeccc-ccCCCCCccccEEEEccCCHHHhcCCeEEEEEE
Confidence            35799999999999988754 889999999992    246789999 77899999999999995 322334578999999


Q ss_pred             EccCCCCC--CceeEEEEEecceeccccCCCceeeEEEEe
Q 023810           79 HAGNEEDT--KKLIGSAKLKLKDVINDVGLGERASLTLKL  116 (277)
Q Consensus        79 d~~~~~~~--d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L  116 (277)
                      |++.. ++  +++||++.|+|.++....     ...||.|
T Consensus        95 d~d~~-~~~~~~~lG~~~i~l~~l~~~~-----~~~W~~L  128 (129)
T 2bwq_A           95 DQARV-REEESEFLGEILIELETALLDD-----EPHWYKL  128 (129)
T ss_dssp             EC--------CEEEEEEEEEGGGCCCSS-----CEEEEEC
T ss_pred             ECCcC-cCcCCceeEEEEEEccccCCCc-----CCccEEC
Confidence            99864 44  899999999999987542     4567776

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.73  E-value=8.4e-17  Score=142.63  Aligned_cols=125  Identities=20%  Similarity=0.277  Sum_probs=101.8

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC--CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEcc
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP--NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAG   81 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~   81 (277)
                      ...|+|+|++|++|...+.. +.+||||++++.+  ..+.+|++ +.++.||+|||+|.|.+...++....|.|+|||.+
T Consensus        18 ~~~L~v~v~~a~~L~~~d~~-~~~dpyv~v~~~~~~~~~~~T~~-~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d   95 (284)
T 2r83_A           18 NNQLLVGIIQAAELPALDMG-GTSDPYVKVFLLPDKKKKFETKV-HRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFD   95 (284)
T ss_dssp             TTEEEEEEEEEECCCCCSSS-SSCCEEEEEEEETCTTSCEECCC-CCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECC
T ss_pred             CCEEEEEEEEeeCCCCCCCC-CCCCeEEEEEEEcCCCceEeCCc-ccCCCCCeeCceEEEEechHHhCcCEEEEEEEECC
Confidence            35899999999999988754 8999999999943  45789999 77899999999999998764455678999999999


Q ss_pred             CCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCC---CCCceEEEEEEEEEe
Q 023810           82 NEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPS---GRPHGKVDVKVAVRE  135 (277)
Q Consensus        82 ~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~s---g~~~G~L~l~v~~~~  135 (277)
                      . .++++|||++.|+|.++...    .....|+.|....   ....|+|.+++++..
T Consensus        96 ~-~~~~~~lG~~~i~l~~l~~~----~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p  147 (284)
T 2r83_A           96 R-FSKHDIIGEFKVPMNTVDFG----HVTEEWRDLQSAEKEEQEKLGDICFSLRYVP  147 (284)
T ss_dssp             S-SSCCCEEEEEEEEGGGCCCS----SCEEEEEECBCCSSCCCCCCCEEEEEEEEET
T ss_pred             C-CCCCceeEEEEEcchhcccC----CcceeEEEeeccccccccccccEEEEEEecC
Confidence            6 46889999999999998654    2356788886542   346799999888764

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.73  E-value=3.2e-17  Score=130.63  Aligned_cols=106  Identities=21%  Similarity=0.183  Sum_probs=85.2

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC---CCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD---PNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld---~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ...|+|+|++|++   .+. ++.+||||++++.   ...+.+|++ +++++||+|||+|.|.+....+....|.|+|||+
T Consensus        25 ~~~L~V~v~~a~~---~d~-~g~sDPyv~v~l~~~~~~~~~kT~v-~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~   99 (138)
T 1wfm_A           25 KAELFVTRLEAVT---SNH-DGGCDCYVQGSVANRTGSVEAQTAL-KKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTC   99 (138)
T ss_dssp             TTEEEEEEEEEEC---CCC-SSCCCEEEEEEEEETTEEEEEECCC-CCCCSSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred             CCEEEEEEEEEEc---CCC-CCCcceEEEEEEEcCCCcccEeccc-CcCCCCCcCCceEEEEecHHHcCCCEEEEEEEEC
Confidence            3589999999994   343 3889999999993   234578999 7889999999999999977556667899999999


Q ss_pred             cCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecC
Q 023810           81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP  119 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~  119 (277)
                      +. ..+++|||++.|+|.++...    .....|+.|...
T Consensus       100 d~-~~~dd~lG~~~i~l~~l~~~----~~~~~W~~L~~~  133 (138)
T 1wfm_A          100 DR-FSRHSVAGELRLGLDGTSVP----LGAAQWGELKTS  133 (138)
T ss_dssp             CS-SCTTSCSEEEEEESSSSSSC----TTCCEEEECCCC
T ss_pred             CC-CCCCcEEEEEEEEcccccCc----ccccceeeCcCC
Confidence            96 47899999999999998543    224678888653

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=1.1e-17  Score=134.49  Aligned_cols=109  Identities=19%  Similarity=0.224  Sum_probs=85.1

Q ss_pred             ceEEEEEEEEeeCCCCC-CC-----CCCCCCcEEEEEECC--CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEE
Q 023810            4 RYEVEVTITSAKDLKNV-NW-----RHGPNRPYAVLWVDP--NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLII   75 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~-~~-----~~g~~dpYv~v~ld~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v   75 (277)
                      ...|+|+|++|++|... +.     ..+.+||||++++.+  ..+.+|++ ++++.||+|||+|.|.|....+....|.|
T Consensus        25 ~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v-~~~t~nP~wne~f~f~v~~~~l~~~~L~~  103 (147)
T 2enp_A           25 HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGV-KRKTQKPVFEERYTFEIPFLEAQRRTLLL  103 (147)
T ss_dssp             TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCC-CCSCSSCCCCBCCEECCCHHHHHHSEEEE
T ss_pred             CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeec-ccCCCCCeEeeeEEEEeChHHhccCEEEE
Confidence            35899999999999874 21     125899999999943  46789999 78899999999999998653333458999


Q ss_pred             EEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeec
Q 023810           76 DVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR  118 (277)
Q Consensus        76 ~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~  118 (277)
                      +|||++. ..+++|||++.|+|.++....    ....|+.|..
T Consensus       104 ~V~d~d~-~~~~~~iG~~~i~l~~l~~~~----~~~~w~~L~~  141 (147)
T 2enp_A          104 TVVDFDK-FSRHCVIGKVSVPLCEVDLVK----GGHWWKALIP  141 (147)
T ss_dssp             EEECCST-TCCSCCCEEEEEETTTSCTTT----CCCEEECCBC
T ss_pred             EEEECCC-CcCCcEEEEEEEechhcCCCC----CccEEEEeec
Confidence            9999986 467889999999999986542    2356777753

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.72  E-value=4e-17  Score=132.02  Aligned_cols=92  Identities=16%  Similarity=0.268  Sum_probs=74.7

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CCCC--eEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DPNK--KCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~~~--~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|+|++|++|...+.. +.+||||++++  +...  +++|++ ++++.||+|||+|.|.|....+....|.|+|||+
T Consensus        30 ~~L~v~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~  107 (153)
T 1w15_A           30 NTLTVVVLKARHLPKSDVS-GLSDPYVKVNLYHAKKRISKKKTHV-KKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS  107 (153)
T ss_dssp             TEEEEEEEEEESCC-------CCCEEEEEEEEETTEEEEEEECCC-CCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred             CEEEEEEEEeECCCCcCCC-CCCCeEEEEEEEeCCeEeceEecCc-ccCCCCCeecceEEEECCHHHhCceEEEEEEEeC
Confidence            5899999999999988754 88999999999  3222  569999 7789999999999999987555567899999999


Q ss_pred             cCCCCCCceeEEEEEecce
Q 023810           81 GNEEDTKKLIGSAKLKLKD   99 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~   99 (277)
                      +. ..+++|||++.|+|.+
T Consensus       108 d~-~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          108 ER-GSRNEVIGRLVLGATA  125 (153)
T ss_dssp             CT-TSCCEEEEEEEESTTC
T ss_pred             CC-CCCCcEEEEEEECCCC
Confidence            86 4688999999999987

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.72  E-value=4.1e-18  Score=135.98  Aligned_cols=108  Identities=18%  Similarity=0.209  Sum_probs=87.0

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC-------------CeEEeeecCCCCCCCccceeEEEe-cCCCCCCC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN-------------KKCSTKVDDEGDTCPYWDETLAIP-LPGPVDDD   70 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~-------------~~~~T~v~~~~~~nP~WnE~f~f~-v~~~~l~~   70 (277)
                      ..|+|+|++|++|...+.. +.+||||++++...             .+.+|++ ++++.||+|||+|.|. +....+..
T Consensus        18 ~~L~V~v~~a~~L~~~d~~-g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~~v~~~~l~~   95 (142)
T 1rh8_A           18 GNLIIHILQARNLVPRDNN-GYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKY-VQKSLNPEWNQTVIYKSISMEQLMK   95 (142)
T ss_dssp             TEEEEEEEEEESCCCCSSS-SCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTT-THHHHSCEEEEEEEECSCCHHHHTT
T ss_pred             CEEEEEEEEecCCCCCCCC-CCCCceEEEEEecCCCcccccccccccceeeccc-cCCCCCCCCCCEEEECCcCHHHccC
Confidence            4799999999999988854 89999999999542             2468888 6789999999999997 65323345


Q ss_pred             ceEEEEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecC
Q 023810           71 TTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP  119 (277)
Q Consensus        71 ~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~  119 (277)
                      ..|.|+|||++. .++++|||++.|+|.++....    ....||.|...
T Consensus        96 ~~l~i~V~d~d~-~~~~~~lG~~~i~l~~l~~~~----~~~~W~~L~~~  139 (142)
T 1rh8_A           96 KTLEVTVWDYDR-FSSNDFLGEVLIDLSSTSHLD----NTPRWYPLKEQ  139 (142)
T ss_dssp             CEEEEEEEEECS-SSCEEEEEEEEEETTSCGGGT----TCCEEEECBCC
T ss_pred             CEEEEEEEECCC-CCCCceEEEEEEeccccccCC----CCCeEEECCcc
Confidence            789999999996 468899999999999986542    24578988654

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.72  E-value=3.9e-17  Score=132.95  Aligned_cols=109  Identities=19%  Similarity=0.309  Sum_probs=87.1

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|+|++|++|...+.. +.+||||++++...    .+.+|++ ++++.||+|||+|.|.|....+....|.|+|||.
T Consensus        25 ~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  102 (159)
T 1tjx_A           25 GKLTVVILEAKNLKKMDVG-GLSDPYVKIHLMQNGKRLKKKKTTI-KKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  102 (159)
T ss_dssp             TEEEEEEEEEESCCCCSTT-SCCCEEEEEEEEETTEEEEEEECCC-CCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CEEEEEEEEeeCCCCccCC-CCCCeEEEEEEEeCCceeceeeCce-ecCCCCCcccceEEEEcCHHHhCCcEEEEEEEEC
Confidence            5899999999999988854 89999999999432    3578998 7789999999999999975444456799999999


Q ss_pred             cCCCCCCceeEEEEEeccee----------ccccCCCceeeEEEEeec
Q 023810           81 GNEEDTKKLIGSAKLKLKDV----------INDVGLGERASLTLKLKR  118 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l----------~~~~~~~~~~~~~~~L~~  118 (277)
                      +. .++++|||++.|+|..+          ....  +.....|+.|..
T Consensus       103 d~-~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~--~~~~~~W~~L~~  147 (159)
T 1tjx_A          103 DK-IGKNDAIGKVFVGYNSTGAELRHWSDMLANP--RRPIAQWHTLQV  147 (159)
T ss_dssp             CS-SSCCEEEEEEEEETTCCHHHHHHHHHHHHST--TCCEEEEEECBC
T ss_pred             CC-CCCCceEEEEEECCCCCCcHHHHHHHHHHCC--CCeeeeEEECcC
Confidence            96 46899999999999853          2221  234568888854

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.72  E-value=2.9e-17  Score=130.09  Aligned_cols=95  Identities=25%  Similarity=0.410  Sum_probs=79.8

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEE
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVH   79 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d   79 (277)
                      ...|+|+|++|++|...+.. +.+||||++++...    .+.+|++ +.++.||+|||+|.|.+....+....|.|+|||
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~~kT~~-~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d   92 (138)
T 3n5a_A           15 ANSIIVNIIKARNLKAMDIG-GTSDPYVKVWLMYKDKRVEKKKTVT-KKRNLNPIFNESFAFDIPTEKLRETTIIITVMD   92 (138)
T ss_dssp             TTEEEEEEEEEESCCCCBTT-TBCCEEEEEEEEETTEEEEEEECCC-CSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEE
T ss_pred             CCeEEEEEEEeeCCCCcCCC-CCcCeEEEEEEEeCCCccceEeCcc-ccCCCCCcCcceEEEECChhhcCceEEEEEEEE
Confidence            35899999999999988754 89999999999432    4678888 788999999999999987644445689999999


Q ss_pred             ccCCCCCCceeEEEEEecceec
Q 023810           80 AGNEEDTKKLIGSAKLKLKDVI  101 (277)
Q Consensus        80 ~~~~~~~d~~iG~~~v~L~~l~  101 (277)
                      .+. .++++|||++.|+|.++.
T Consensus        93 ~~~-~~~~~~lG~~~i~l~~~~  113 (138)
T 3n5a_A           93 KDK-LSRNDVIGKIYLSWKSGP  113 (138)
T ss_dssp             CCS-SSCCEEEEEEEESSSSCH
T ss_pred             CCC-CCCCcEEEEEEEccccCC
Confidence            996 468899999999998643

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.72  E-value=6.2e-17  Score=132.80  Aligned_cols=95  Identities=19%  Similarity=0.279  Sum_probs=80.9

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEE
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVH   79 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d   79 (277)
                      ...|+|+|++|++|...+.. +.+||||++++..    ..+.+|++ ++++.||+|||+|.|.+....+....|.|+|||
T Consensus        36 ~~~L~V~v~~a~~L~~~d~~-g~~DPyv~v~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d  113 (166)
T 2cm5_A           36 QGGLIVGIIRCVHLAAMDAN-GYSDPFVKLWLKPDMGKKAKHKTQI-KKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWD  113 (166)
T ss_dssp             TTEEEEEEEEEESCCCCSTT-SCCCEEEEEEEETC---CCEEECCC-CCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCEEEEEEEEeECCCCccCC-CCCCcEEEEEEECCCCccceEeCCc-ccCCCCCcccceEEEEcchHhcCCCEEEEEEEE
Confidence            35899999999999988754 8999999999953    36789999 788999999999999997544445689999999


Q ss_pred             ccCCCCCCceeEEEEEecceec
Q 023810           80 AGNEEDTKKLIGSAKLKLKDVI  101 (277)
Q Consensus        80 ~~~~~~~d~~iG~~~v~L~~l~  101 (277)
                      ++. .++++|||++.|+|.++.
T Consensus       114 ~d~-~~~~~~iG~~~i~l~~~~  134 (166)
T 2cm5_A          114 YDI-GKSNDYIGGCQLGISAKG  134 (166)
T ss_dssp             CCS-SSCCEEEEEEEEETTCCH
T ss_pred             CCC-CCCCcEEEeEEEecccCC
Confidence            996 468899999999998753

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.71  E-value=5.3e-17  Score=134.09  Aligned_cols=107  Identities=21%  Similarity=0.260  Sum_probs=86.5

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEE-E
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVV-H   79 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~-d   79 (277)
                      ..|+|+|++|++|...+..++.+||||++++...    .+.+|++ ++++.||+|||+|.|.+..   ....|.|+|| |
T Consensus        30 ~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~v~~---~~~~L~~~V~~d  105 (171)
T 2q3x_A           30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRI-ARKTLDPLYQQSLVFDESP---QGKVLQVIVWGD  105 (171)
T ss_dssp             TEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCC-CCSCSSCEEEEEEECSSCC---TTEEEEEEEEEE
T ss_pred             CEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCcc-CCCCCCCCCCcEEEEEecC---CCCEEEEEEEEc
Confidence            4799999999999987742389999999999432    3678999 7889999999999999864   4678999999 8


Q ss_pred             ccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCC
Q 023810           80 AGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPS  120 (277)
Q Consensus        80 ~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~s  120 (277)
                      ++. .++++|||++.|+|.++...    .....||.|...+
T Consensus       106 ~d~-~~~d~~iG~~~i~l~~l~~~----~~~~~W~~L~~~~  141 (171)
T 2q3x_A          106 YGR-MDHKCFMGVAQILLEELDLS----SMVIGWYKLFPPS  141 (171)
T ss_dssp             CST-TCSSEEEEEEEECGGGSCTT----SCEEEEEECBCGG
T ss_pred             CCC-CCCCCEEEEEEEEHHHcccC----CCcceeEECCCcc
Confidence            886 46889999999999998643    2356899996543

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.68  E-value=2.8e-16  Score=140.52  Aligned_cols=126  Identities=21%  Similarity=0.274  Sum_probs=97.2

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEcc
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAG   81 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~   81 (277)
                      ...|+|+|++|++|...+.. +.+||||++++  +...+.+|++ ++++.||+|||+|.|.+...++....|.|+|||.+
T Consensus        19 ~~~L~v~v~~a~~L~~~d~~-g~~dPyv~v~l~~~~~~~~kT~v-~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d   96 (296)
T 1dqv_A           19 SDQLVVRILQALDLPAKDSN-GFSDPYVKIYLLPDRKKKFQTKV-HRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   96 (296)
T ss_dssp             SCEEEEEEEEEECCCCCSTT-SCCCEEEEEECTTSTTSCEECCC-CCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCcCCC-CCcCeEEEEEEEcCCCeeEeCCc-cCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcC
Confidence            35899999999999988754 89999999999  4467789999 78899999999999998754445568999999999


Q ss_pred             CCCCCCceeEEEEEe-cceeccccCCCceeeEEEEeecC--CCCCceEEEEEEEEEe
Q 023810           82 NEEDTKKLIGSAKLK-LKDVINDVGLGERASLTLKLKRP--SGRPHGKVDVKVAVRE  135 (277)
Q Consensus        82 ~~~~~d~~iG~~~v~-L~~l~~~~~~~~~~~~~~~L~~~--sg~~~G~L~l~v~~~~  135 (277)
                      . .++++|||++.|+ |.++....   .....|+.|...  .....|+|.+++++..
T Consensus        97 ~-~~~~~~iG~~~i~~l~~~~~~~---~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~  149 (296)
T 1dqv_A           97 R-FSRHDLIGQVVLDNLLELAEQP---PDRPLWRDILEGGSEKADLGELNFSLCYLP  149 (296)
T ss_dssp             S-SSCCCEEEEEECCCTTGGGSSC---SSCCCCEECBCCSSCCSCCCEEEEEEEEET
T ss_pred             C-CCCCceEEEEEeccccccccCC---ccceeeeccccccccccccceEEEEEEecc
Confidence            6 4789999999996 44444321   123456666443  3345799988888754

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.68  E-value=5.4e-16  Score=123.11  Aligned_cols=119  Identities=18%  Similarity=0.307  Sum_probs=98.4

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCC-CCCCCccceeEEEecCCCCCCCceEEEEEEEccCC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDE-GDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNE   83 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~-~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~   83 (277)
                      =.|+|+|.+|++|+      ++.|||+++.+ +..+++|++ ++ ++.||+|||.|+|++......++.|.|.|++++++
T Consensus        21 msL~V~l~~a~~Lp------g~~Dp~akv~F-Rg~k~kTkv-i~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v   92 (144)
T 3l9b_A           21 MALIVHLKTVSELR------GRADRIAKVTF-RGQSFYSRV-LENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKV   92 (144)
T ss_dssp             EEEEEEEEEEESCC------SCEEEEEEEEE-TTEEEECCC-EEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTT
T ss_pred             EEEEEEEEEecCCC------CCCCCeEEEEE-eccceeeEE-eccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccc
Confidence            36899999999997      57799999999 588899999 65 79999999999999987545578899999999985


Q ss_pred             CCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCC-ceEEEEEEEEEec
Q 023810           84 EDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP-HGKVDVKVAVRES  136 (277)
Q Consensus        84 ~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~-~G~L~l~v~~~~~  136 (277)
                       .+++|||++.|+|+++....    ...++-.|.+.+.++ .++|.++|+|..+
T Consensus        93 -~~nrlIG~~~i~Lq~lv~~~----~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp  141 (144)
T 3l9b_A           93 -FSNKLIGTFRMVLQKVVEEN----RVEVSDTLIDDNNAIIKTSLSMEVRYQAA  141 (144)
T ss_dssp             -SCCEEEEEEEEESHHHHHHS----EEEEEEEEECTTSCEEEEEEEEEEEEEET
T ss_pred             -cCCCEEEEEEEEhHHhccCC----eEEEeecccCCCCCccccEEEEEEEecCC
Confidence             68999999999999998764    234566677766554 5888888888654

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.65  E-value=8.2e-16  Score=146.96  Aligned_cols=121  Identities=15%  Similarity=0.252  Sum_probs=98.3

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      .+|+|+|++|++|+..+.. +.+||||+++++ ..+.+|++ +.++.||+|||+|.|.+..  .....|.|+|||++. .
T Consensus       387 ~~l~v~v~~a~~L~~~d~~-~~sdpyv~v~~~-~~~~~T~~-~~~t~nP~w~e~f~f~~~~--~~~~~l~~~v~d~d~-~  460 (510)
T 3jzy_A          387 GRLMVHVIEATELKACKPN-GKSNPYCEISMG-SQSYTTRT-IQDTLNPKWNFNCQFFIKD--LYQDVLCLTLFDRDQ-F  460 (510)
T ss_dssp             EEEEEEEEEEESCCCCSTT-SCCCEEEEEEET-TEEEECCC-CSSCSSCEEEEEEEEEESC--TTTCEEEEEEEECCS-S
T ss_pred             ceEEEEeceeecCCCCCCC-CCCCeEEEEEEC-CeeccCCc-cCCCCCCccCceEEEEecC--CCCCEEEEEEEeCCC-C
Confidence            5799999999999988754 899999999994 67889999 7889999999999999965  345679999999997 4


Q ss_pred             CCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEE
Q 023810           85 DTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVR  134 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~  134 (277)
                      +.++|||++.|+|.++............|+.|.   ++..|+|.|++.+.
T Consensus       461 ~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~---~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          461 SPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH---EVPTGEVWVRFDLQ  507 (510)
T ss_dssp             SSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB---SSSSCEEEEEEEEE
T ss_pred             CCCCceEEEEEEHHHhccccCCCCceeeeecCC---CCCCceEEEEEEEE
Confidence            789999999999999876532112245677764   34679998888764

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.59  E-value=1.5e-14  Score=141.71  Aligned_cols=121  Identities=17%  Similarity=0.241  Sum_probs=97.4

Q ss_pred             ceEEEEEEEEeeCCCCCCC-CCCCCCcEEEEEECC----CCeEEeeecCCCC-CCCccceeEEEecCCCCCCCceEEEEE
Q 023810            4 RYEVEVTITSAKDLKNVNW-RHGPNRPYAVLWVDP----NKKCSTKVDDEGD-TCPYWDETLAIPLPGPVDDDTTLIIDV   77 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~-~~g~~dpYv~v~ld~----~~~~~T~v~~~~~-~nP~WnE~f~f~v~~~~l~~~~L~v~V   77 (277)
                      ...|+|+|++|++|...+. .++..||||++++.+    ..+.+|++ ++++ .||+|||+|.|.|....  ...|+|+|
T Consensus       496 ~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkv-i~~ng~NP~WnE~f~F~v~~~e--l~~L~~~V  572 (624)
T 1djx_A          496 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAV-ITNNGFNPRWDMEFEFEVTVPD--LALVRFMV  572 (624)
T ss_dssp             CEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCC-CTTCSSSCEEEEEEEEEESCGG--GCEEEEEE
T ss_pred             ceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeeccc-ccCCCCCCccCceEEEEEecCC--CCEEEEEE
Confidence            3589999999999987763 237899999999943    25679999 5554 99999999999997532  35799999


Q ss_pred             EEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCC--ceEEEEEEEEEe
Q 023810           78 VHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP--HGKVDVKVAVRE  135 (277)
Q Consensus        78 ~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~--~G~L~l~v~~~~  135 (277)
                      ||++. .++++|||++.|+|..|..+       .++++|++..+..  .++|.|+++|.+
T Consensus       573 ~D~D~-~~~dd~iG~~~ipl~~L~~G-------~r~v~L~d~~g~~~~~~~L~v~i~~~~  624 (624)
T 1djx_A          573 EDYDS-SSKNDFIGQSTIPWNSLKQG-------YRHVHLLSKNGDQHPSATLFVKISIQD  624 (624)
T ss_dssp             EECCS-SSCCEEEEEEEEEGGGBCCE-------EEEEEEECTTSCEEEEEEEEEEEEEEC
T ss_pred             EEcCC-CCCCceeEEEEEEHHHcCCC-------cEEEeCCCCCcCCCCceEEEEEEEEEC
Confidence            99986 47899999999999998653       2578888877764  588889888853

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.58  E-value=1.7e-14  Score=138.86  Aligned_cols=112  Identities=18%  Similarity=0.224  Sum_probs=89.7

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      ..|+|+|++|++|+. +++ +++||||++++. ..+.+|++ +++++||+|||+|.|.+... .....|.|+|||++. .
T Consensus       394 ~~L~V~V~~A~~L~~-D~~-g~sDPYV~v~l~-~~~~kTkv-ik~tlNP~Wne~f~f~~~~~-~~~~~L~~~V~D~D~-~  467 (540)
T 3nsj_A          394 AHLVVSNFRAEHLWG-DYT-TATDAYLKVFFG-GQEFRTGV-VWNNNNPRWTDKMDFENVLL-STGGPLRVQVWDADY-G  467 (540)
T ss_dssp             EEEEEEEEEEESCCC-SSC-SCCCEEEEEEET-TEEEECCC-BCSCSSCBCCCCEEEEEEET-TTCCCEEEEEEECCS-S
T ss_pred             cEEEEEEEEccCCCc-ccC-CCcCeEEEEEEC-CEeeeeee-ecCCCCCCCCeEEEEEEecC-CCCCEEEEEEEECCC-C
Confidence            479999999999998 765 899999999995 56799999 88899999999999985321 135689999999996 4


Q ss_pred             CCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEec
Q 023810           85 DTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRES  136 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~~  136 (277)
                      .+++|||++.++|..       +. ...|+.|      .+|+|.+++++.=.
T Consensus       468 ~~dD~LG~~~~~L~~-------g~-~~~~~~l------~~G~l~~~~~~~c~  505 (540)
T 3nsj_A          468 WDDDLLGSCDRSPHS-------GF-HEVTCEL------NHGRVKFSYHAKCL  505 (540)
T ss_dssp             SCCEEEEEEEECCCS-------EE-EEEEEEC------SSSEEEEEEEEEEC
T ss_pred             CCCCEEEEEEEEeeC-------Cc-EEEEEEc------CCeEEEEEEEEEEC
Confidence            688999999999873       22 3456665      25899988887543

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.55  E-value=2.9e-14  Score=126.18  Aligned_cols=111  Identities=18%  Similarity=0.275  Sum_probs=87.0

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC--CC--CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD--PN--KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld--~~--~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|+|++|++|...+.. +.+||||++++.  +.  .+.+|++ ++++.||+|||+|.|.+....+....|.|+|||+
T Consensus       150 ~~l~v~v~~a~~L~~~d~~-~~~dpyv~v~~~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  227 (284)
T 2r83_A          150 GKLTVVILEAKNLKKMDVG-GLSDPYVKIHLMQNGKRLKKKKTTI-KKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  227 (284)
T ss_dssp             TEEEEEEEEEESCCCCSTT-SCCCEEEEEEEEETTEEEEEEECCC-CCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEEC
T ss_pred             CceEEEEEEeECCCCcCCC-CCcCeEEEEEEEeCCcEeeeeccce-ecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeC
Confidence            4799999999999988754 889999999983  22  3568888 7889999999999999976545456799999999


Q ss_pred             cCCCCCCceeEEEEEecceecccc--------CCCceeeEEEEeec
Q 023810           81 GNEEDTKKLIGSAKLKLKDVINDV--------GLGERASLTLKLKR  118 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~~--------~~~~~~~~~~~L~~  118 (277)
                      +. .++++|||++.|+|..+....        ..+.....|+.|..
T Consensus       228 d~-~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~  272 (284)
T 2r83_A          228 DK-IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  272 (284)
T ss_dssp             CS-SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred             CC-CCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence            96 478999999999997642210        11234568888854

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.46  E-value=1.6e-13  Score=136.11  Aligned_cols=104  Identities=17%  Similarity=0.321  Sum_probs=86.3

Q ss_pred             ceEEEEEEEEeeCCCC---CCCCCCCCCcEEEEEECC--CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEE
Q 023810            4 RYEVEVTITSAKDLKN---VNWRHGPNRPYAVLWVDP--NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVV   78 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~---~~~~~g~~dpYv~v~ld~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~   78 (277)
                      ...|+|+|++|++|..   .+.. +++||||++++.+  ..+.+|++ ++++.||+|||+|.|.|...  ....|.|+||
T Consensus        17 ~g~L~V~Vi~A~nL~~~~~~D~~-g~sDPYV~V~l~~~~~~k~kTkv-ik~tlNPvWNEtF~F~v~~~--~~~~L~~~V~   92 (749)
T 1cjy_A           17 SHKFTVVVLRATKVTKGAFGDML-DTPDPYVELFISTTPDSRKRTRH-FNNDINPVWNETFEFILDPN--QENVLEITLM   92 (749)
T ss_dssp             CEEEEEEEEEEECCCSCHHHHHH-CCCCEEEEEECTTSTTCCEECCC-CTTCSSCEEEEEEEEEECTT--SCCBCEEEEE
T ss_pred             ccEEEEEEEEEECCCCccccCCC-CCcCeEEEEEEecCCCCeEecce-EcCCCCCeeeeEEEEEecCC--CCCEEEEEEE
Confidence            3589999999999987   6644 8899999999953  46789999 77899999999999999752  3568999999


Q ss_pred             EccCCCCCCceeEEEEEecceeccccCCCceeeEEEEee
Q 023810           79 HAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLK  117 (277)
Q Consensus        79 d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~  117 (277)
                      |++.+ + ++|||++.|+|.+|...    .....|+.|.
T Consensus        93 D~D~~-~-ddfIG~v~I~L~~L~~g----~~~~~w~~L~  125 (749)
T 1cjy_A           93 DANYV-M-DETLGTATFTVSSMKVG----EKKEVPFIFN  125 (749)
T ss_dssp             ECCSS-S-CEEEEEECCBSTTSCTT----CCCCEEEEET
T ss_pred             ECCCC-C-CceeEEEEEEHHHcCCC----CceEEEEecC
Confidence            99974 5 99999999999998653    2345788884

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.46  E-value=6.2e-15  Score=140.54  Aligned_cols=118  Identities=14%  Similarity=0.188  Sum_probs=18.1

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCC---CCCccceeEEEecCCCCCCCceEEEEEEEc-
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGD---TCPYWDETLAIPLPGPVDDDTTLIIDVVHA-   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~---~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~-   80 (277)
                      ..|+|+|++|++|...+      ||||+++++...+.||++ ++++   .||+|||+|.|.+...   ...|.|+|||+ 
T Consensus        11 ~~L~V~VieAk~L~~~d------dpYv~v~l~~~~~~kT~v-~~kt~~glnP~WnE~F~f~~~~~---~~~L~v~V~d~~   80 (483)
T 3bxj_A           11 NVLKLWIIEARELPPKK------RYYCELCLDDMLYARTTS-KPRSASGDTVFWGEHFEFNNLPA---VRALRLHLYRDS   80 (483)
T ss_dssp             ECC----------------------------------------------------CCEECC-------------------
T ss_pred             cEEEEEEEEcCCcCCCC------CCeEEEEECCeEEeeeeE-EeCCCCCCCCccccEEEEecCCC---ccEEEEEEEecC
Confidence            46899999999998643      899999997555678998 6667   9999999999997542   36799999994 


Q ss_pred             cC--CCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCC------------------------CCceEEEEEEEEE
Q 023810           81 GN--EEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSG------------------------RPHGKVDVKVAVR  134 (277)
Q Consensus        81 ~~--~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg------------------------~~~G~L~l~v~~~  134 (277)
                      +.  ...+++|||++.|+|.++....    ....||+|..+..                        +..|+|+|+++|.
T Consensus        81 d~~~~~~~d~~lG~v~i~l~~l~~~~----~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~  156 (483)
T 3bxj_A           81 DKKRKKDKAGYVGLVTVPVATLAGRH----FTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQ  156 (483)
T ss_dssp             ------------------------------CCEECC--------------------------------------CEEEEE
T ss_pred             CccccCCCCceEEEEEEEHHHhcCCC----CCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEee
Confidence            31  1357899999999999987542    2456777743211                        2469999999998


Q ss_pred             ec
Q 023810          135 ES  136 (277)
Q Consensus       135 ~~  136 (277)
                      +.
T Consensus       157 ~~  158 (483)
T 3bxj_A          157 TM  158 (483)
T ss_dssp             EC
T ss_pred             ee
Confidence            75

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.44  E-value=5.5e-14  Score=125.60  Aligned_cols=94  Identities=22%  Similarity=0.260  Sum_probs=79.8

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC--C--CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD--P--NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld--~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|+|++|++|...+.. +.+||||++++.  +  ..+.+|++ ++++.||+|||+|.|.|....+....|.|+|||+
T Consensus       152 ~~l~v~v~~a~~L~~~d~~-g~~Dpyv~v~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  229 (296)
T 1dqv_A          152 GLLTVTIIKASNLKAMDLT-GFSDPYVKASLISEGRRLKKRKTSI-KKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY  229 (296)
T ss_dssp             TEEEEEEEEEESCCCCSSS-SCCCEEEEECCCTTCCTTSCEECCC-CCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             ceeEEEEEEeecCCccCCC-CCCCcEEEEEEEeCCcCccceecce-ecCCCCCeECceEEEEcCHHHccCcEEEEEEEeC
Confidence            5799999999999988865 889999999994  2  25679998 7889999999999999976445456799999999


Q ss_pred             cCCCCCCceeEEEEEecceec
Q 023810           81 GNEEDTKKLIGSAKLKLKDVI  101 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~  101 (277)
                      +. .++++|||++.|+|.++.
T Consensus       230 d~-~~~~~~iG~~~i~l~~~~  249 (296)
T 1dqv_A          230 DC-IGHNEVIGVCRVGPEAAD  249 (296)
T ss_dssp             CS-SSCCEEEEECCCSSCTTC
T ss_pred             CC-CCCCceEEEEEECCccCC
Confidence            96 478999999999998754

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.36  E-value=6.3e-12  Score=126.61  Aligned_cols=113  Identities=18%  Similarity=0.263  Sum_probs=89.4

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC-----CCeEEeeecCCCCCCCccce-eEEEe-cCCCCCCCceEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP-----NKKCSTKVDDEGDTCPYWDE-TLAIP-LPGPVDDDTTLIIDV   77 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~-----~~~~~T~v~~~~~~nP~WnE-~f~f~-v~~~~l~~~~L~v~V   77 (277)
                      .+|+|+|++|++|..     .+.||||+|.+.+     ..+++|++..+++.||+||| +|.|. |...  +...|+|+|
T Consensus       725 ~~L~V~Visaq~L~~-----~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~p--ela~Lrf~V  797 (885)
T 3ohm_B          725 NALRVKVISGQFLSD-----RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLP--TLASLRIAA  797 (885)
T ss_dssp             EEEEEEEEEEESCCS-----SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCG--GGCEEEEEE
T ss_pred             eEEEEEEEEeccCcc-----cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcC--CcCEEEEEE
Confidence            479999999999974     3579999999932     13578998445679999999 69998 6542  235799999


Q ss_pred             EEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCC--ceEEEEEEEEEec
Q 023810           78 VHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP--HGKVDVKVAVRES  136 (277)
Q Consensus        78 ~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~--~G~L~l~v~~~~~  136 (277)
                      ||++     ++|||++.|+|..|..+       .+.++|++..+..  .++|.|.|.+.+.
T Consensus       798 ~D~d-----ddfiG~~~lpL~~L~~G-------yR~vpL~~~~g~~l~~atLfv~i~~~~~  846 (885)
T 3ohm_B          798 FEEG-----GKFVGHRILPVSAIRSG-------YHYVCLRNEANQPLCLPALLIYTEASDY  846 (885)
T ss_dssp             EETT-----TEEEEEEEEETTTCCCE-------EEEEEEECTTSCEEEEEEEEEEEEEEEC
T ss_pred             EcCC-----ccEEeeEEEEHHHcCCC-------ceEEEecCCCCCccCceEEEEEEEEEec
Confidence            9976     58999999999998654       3467888877764  7999999999874

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.32  E-value=2.3e-11  Score=122.06  Aligned_cols=111  Identities=17%  Similarity=0.263  Sum_probs=86.3

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC-----CCeEEee-ecCCCCCCCccce-eEEE-ecCCCCCCCceEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP-----NKKCSTK-VDDEGDTCPYWDE-TLAI-PLPGPVDDDTTLIID   76 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~-----~~~~~T~-v~~~~~~nP~WnE-~f~f-~v~~~~l~~~~L~v~   76 (277)
                      ..|+|+|++|++|..     .+.||||+|.+.+     ..+.+|+ +..+++.||+||| +|.| .|...+  -..|+|+
T Consensus       678 ~~L~V~Visa~~L~~-----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~e--l~~Lr~~  750 (799)
T 2zkm_X          678 TTLSITVISGQFLSE-----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPE--LASLRVA  750 (799)
T ss_dssp             EEEEEEEEEEESCCS-----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGG--GCEEEEE
T ss_pred             eeEEEEEEeccccCc-----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCC--ccEEEEE
Confidence            479999999999974     3679999999932     2367999 7445679999999 6999 785432  2479999


Q ss_pred             EEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCC--CceEEEEEEEEE
Q 023810           77 VVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGR--PHGKVDVKVAVR  134 (277)
Q Consensus        77 V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~--~~G~L~l~v~~~  134 (277)
                      |||++     ++|||++.|+|+.|..+       .++++|.+..+.  ..++|.|++.+.
T Consensus       751 V~D~d-----~d~iG~~~ipl~~L~~G-------~r~v~L~~~~g~~~~~~~Lfv~i~~~  798 (799)
T 2zkm_X          751 VMEEG-----NKFLGHRIIPINALNSG-------YHHLCLHSESNMPLTMPALFIFLEMK  798 (799)
T ss_dssp             EEETT-----TEEEEEEEEEGGGBCCE-------EEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             EEEeC-----CCccceEeeehhhcCCC-------cEEEeccCCCCCCCCceEEEEEEEEE
Confidence            99985     58999999999998653       356778776665  357888888775

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.31  E-value=2e-11  Score=122.18  Aligned_cols=113  Identities=23%  Similarity=0.291  Sum_probs=89.3

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----C--CeEEeeecCCCCCCCcccee-EEEe-cCCCCCCCceEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----N--KKCSTKVDDEGDTCPYWDET-LAIP-LPGPVDDDTTLIID   76 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~--~~~~T~v~~~~~~nP~WnE~-f~f~-v~~~~l~~~~L~v~   76 (277)
                      .+|+|+|++|++|..     .+.||||+|.+.+    .  .+++|++..+++.||+|||+ |.|. |...+  -..|+|+
T Consensus       650 ~~L~V~Visaq~L~~-----~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pe--la~Lrf~  722 (816)
T 3qr0_A          650 GTIEIKIISAQFLSD-----KQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPD--LAVVRII  722 (816)
T ss_dssp             EEEEEEEEEEECCCS-----SCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGG--GCEEEEE
T ss_pred             eEEEEEEEEcccCCC-----CCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCC--ccEEEEE
Confidence            579999999999974     3679999999932    1  46789985556799999998 9998 75422  3579999


Q ss_pred             EEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCC--ceEEEEEEEEEec
Q 023810           77 VVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP--HGKVDVKVAVRES  136 (277)
Q Consensus        77 V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~--~G~L~l~v~~~~~  136 (277)
                      |||++     ++|||++.|+|+.|..+       .+.++|++..+..  .++|.|.|++.+.
T Consensus       723 V~D~d-----ddfiG~~~ipL~~L~~G-------yR~vpL~~~~g~~~~~atLfv~i~~~~~  772 (816)
T 3qr0_A          723 VSEEN-----GKFIGHRVMPLDGIKPG-------YRHVPLRNESNRPLGLASVFAHIVAKDY  772 (816)
T ss_dssp             EEETT-----SCEEEEEEEESTTCCCE-------EEEEEEECTTSCEEEEEEEEEEEEEEEC
T ss_pred             EEecC-----CCeeeEEEEEHHHcCCc-------ceEEEEeCCCCCCCCceEEEEEEEEEec
Confidence            99974     58999999999998754       3467888877765  3788888888774

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.27  E-value=1.4e-11  Score=121.81  Aligned_cols=106  Identities=21%  Similarity=0.265  Sum_probs=87.2

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC----CCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD----PNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld----~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|+|++|++|...+.. +.+||||++++.    ...+.+|++ +++++||+|||+|.|.+.... ....|.|+|||+
T Consensus       172 ~~L~V~v~~a~~L~~~d~~-g~sDPyvkv~l~p~~~~~~k~kT~v-~~~tlnP~wne~f~f~~~~~~-~~~~L~v~v~d~  248 (674)
T 3pfq_A          172 EVLIVVVRDAKNLVPMDPN-GLSDPYVKLKLIPDPKSESKQKTKT-IKSSLNPEWNETFRFQLKESD-KDRRLSVEIWDW  248 (674)
T ss_dssp             SEEEEEEEEEESCCCCSTT-SSCCEEEEEEEESCSSCCSCEECCC-CSSCSSCEEEEEEEEECCSTT-TTCEEEEEEEEC
T ss_pred             ceeeeeeecccccCCCCcc-cccCcccccccccCccccccccccc-cccccCCCccceeeeecccCC-ccceeeeEEeec
Confidence            4789999999999988865 899999999992    235689999 788999999999999987643 345699999999


Q ss_pred             cCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecC
Q 023810           81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP  119 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~  119 (277)
                      +. .++++|||++.|+|+++....     ...|+.|...
T Consensus       249 d~-~~~dd~iG~~~i~l~~l~~~~-----~~~w~~Lls~  281 (674)
T 3pfq_A          249 DL-TSRNDFMGSLSFGISELQKAG-----VDGWFKLLSQ  281 (674)
T ss_dssp             CS-SSCCEECCBCCCBTTHHHHCC-----EEEEEECBCT
T ss_pred             cc-ccccccccccccchhhhccCC-----cccceeeccc
Confidence            96 578999999999999987653     2567777543

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.22  E-value=3.3e-10  Score=87.41  Aligned_cols=114  Identities=15%  Similarity=0.207  Sum_probs=83.0

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCC---eEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccC
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNK---KCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN   82 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~---~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~   82 (277)
                      .|+|.+.++..-.... .....||||.+.++-..   +.+|-+..+.+..|+|||+|.-.|.+    .+.|.|.|++...
T Consensus         7 flRi~~~~~~~~~~~~-~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~----Gr~l~i~Vfh~a~   81 (126)
T 1yrk_A            7 FLRIAFNSYELGSLQA-EDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE----GRVIQIVLMRAAE   81 (126)
T ss_dssp             EEEEEEEEEECSSCCC-SSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT----TCEEEEEEEEETT
T ss_pred             cEEeeeccccccccCC-ccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC----CEEEEEEEEcCCC
Confidence            6788876665322111 11368999999995322   22553436789999999999999975    6789999998773


Q ss_pred             CCCCCceeEEEEEecceeccccCC-CceeeEEEEeecCCCCCceEEEEEEEEE
Q 023810           83 EEDTKKLIGSAKLKLKDVINDVGL-GERASLTLKLKRPSGRPHGKVDVKVAVR  134 (277)
Q Consensus        83 ~~~~d~~iG~~~v~L~~l~~~~~~-~~~~~~~~~L~~~sg~~~G~L~l~v~~~  134 (277)
                           +||..|+|.+++|+.+... +.....|+.|     +++|+|.+.+.+.
T Consensus        82 -----~fvAn~tV~~edL~~~c~~~~g~~e~WvdL-----eP~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 -----EPVSEVTVGVSVLAERCKKNNGKAEFWLDL-----QPQAKVLMSVQYF  124 (126)
T ss_dssp             -----EEEEEEEEEHHHHHHHHHTTTTEEEEEEEC-----BSSCEEEEEEEEE
T ss_pred             -----CeeeEEEEEHHHHHhhhccCCCceEEEEec-----ccCcEEEEEEEEe
Confidence                 8999999999999966211 2345789998     3478999988875

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=99.13  E-value=4.4e-10  Score=87.88  Aligned_cols=116  Identities=14%  Similarity=0.207  Sum_probs=82.9

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCC---eEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccC
Q 023810            6 EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNK---KCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN   82 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~---~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~   82 (277)
                      .|+|.+.+..............||||.+.++-..   +.+|-+.++.+..|+|||+|.-.|.+    .+.|.|.|+|...
T Consensus        11 flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~----Gr~l~i~Vfh~a~   86 (138)
T 2enj_A           11 FLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK----GRVMQIIVKGKNV   86 (138)
T ss_dssp             CEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS----SCEEEEEEECSSC
T ss_pred             ceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC----CeEEEEEEEcCCC
Confidence            5788887766543221111368999999995322   24552225568899999999999975    6789999997763


Q ss_pred             CCCCCceeEEEEEecceeccccCC-CceeeEEEEeecCCCCCceEEEEEEEEEe
Q 023810           83 EEDTKKLIGSAKLKLKDVINDVGL-GERASLTLKLKRPSGRPHGKVDVKVAVRE  135 (277)
Q Consensus        83 ~~~~d~~iG~~~v~L~~l~~~~~~-~~~~~~~~~L~~~sg~~~G~L~l~v~~~~  135 (277)
                           +||..|+|.+.+|+.+... +.....|+.|     +++|+|.+.+.+.-
T Consensus        87 -----~fVAn~tV~~edL~~~ck~~~g~~e~WvdL-----eP~Gkl~v~i~~~~  130 (138)
T 2enj_A           87 -----DLISETTVELYSLAERCRKNNGKTEIWLEL-----KPQGRMLMNARYFL  130 (138)
T ss_dssp             -----SCCEEEEEESHHHHHHHHHTTTCEEEEEEC-----BSSCEEEEEEEECC
T ss_pred             -----CeeeEEEEEHHHHHhhhccCCCceEEEEec-----ccCcEEEEEEEEEE
Confidence                 7999999999999965211 2345789998     34788999888854

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A

Probab=98.44  E-value=6.3e-09  Score=86.24  Aligned_cols=31  Identities=32%  Similarity=0.451  Sum_probs=11.3

Q ss_pred             cccCCCchhHHHHHHHHHHHhHhhhhhhhhh
Q 023810          223 KSKFGGMGTGLAVGAVGGILGGLALAEGVDA  253 (277)
Q Consensus       223 ~~~~~g~g~g~~~g~~~g~~gg~~~~~~~~~  253 (277)
                      ++.+++|++++|+||++|+|+|++|+++++.
T Consensus        95 ~kg~~g~a~aAa~Gag~G~LGGalLG~a~~~  125 (219)
T 1dx0_A           95 KTNMKHVAGAAAAGAVVGGLGGYMLGSAMSR  125 (219)
T ss_dssp             ------------------CCCSCEECCCCCC
T ss_pred             CCCcchHHHHHHHHHHhhhhhhhhhhccccc
Confidence            3445577778999999999999999987765

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=97.18  E-value=0.0017  Score=51.96  Aligned_cols=125  Identities=18%  Similarity=0.151  Sum_probs=84.6

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC--CCCeEEeeecCCCCCCCccceeEEEecCCC-----CCCCceEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD--PNKKCSTKVDDEGDTCPYWDETLAIPLPGP-----VDDDTTLIIDV   77 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld--~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~-----~l~~~~L~v~V   77 (277)
                      ..++|.|.++.--...-...+..+|...+.++  .-+.+.|.+ .. +.+|.+|.+..|.|..+     -++...|.|++
T Consensus        18 nlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv-~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lEL   95 (156)
T 2yrb_A           18 NLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPV-VR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEV   95 (156)
T ss_dssp             EEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCC-EE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEE
T ss_pred             cEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccc-cc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEE
Confidence            46788888775321110001344665555542  356778887 43 88999999988888654     13345789999


Q ss_pred             EEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCC--CCceEEEEEEEEEec
Q 023810           78 VHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSG--RPHGKVDVKVAVRES  136 (277)
Q Consensus        78 ~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg--~~~G~L~l~v~~~~~  136 (277)
                      .....  ..-+.||.++|+|.+|+...   ++......|....+  ..-|.|.+.|+++-+
T Consensus        96 hqa~g--~~~~tla~~~I~l~~lLe~~---~~i~g~~~L~g~~g~~~~~G~LeywiRL~~P  151 (156)
T 2yrb_A           96 HQAYS--TEYETIAACQLKFHEILEKS---GRIFCTASLIGTKGDIPNFGTVEYWFRLRVS  151 (156)
T ss_dssp             EEECS--SCEEEEEEEEECCSHHHHCC---SCEEEEEEECBSSSCCTTSEEEEEEEEEEEC
T ss_pred             EEeeC--CCceEEEEEEEEhHHhhCcC---CceEEEEEEEcCCCCcceEEEEEEEEEEecc
Confidence            88653  35578999999999999763   23445567766666  568999999999765

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=96.74  E-value=0.033  Score=46.98  Aligned_cols=58  Identities=19%  Similarity=0.279  Sum_probs=44.5

Q ss_pred             eEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC---CCCceeEEEEEecc
Q 023810           40 KCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE---DTKKLIGSAKLKLK   98 (277)
Q Consensus        40 ~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~---~~d~~iG~~~v~L~   98 (277)
                      ..+|.| ...+.+|.|+|+|++.|+........|.|++++.....   ..+..+|.+.+||-
T Consensus        78 e~~S~V-~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~  138 (220)
T 3l4c_A           78 EYKSVI-YYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM  138 (220)
T ss_dssp             CEECCC-CTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred             eEEEEE-EEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence            457777 67789999999999999886666788999999865321   12357899999874

>3heq_A Major prion protein; cell membrane, disease mutation, disulfide bond, glycoprotein, golgi apparatus, GPI-anchor, lipoprotein, membrane, polymorphism; 1.80A {Homo sapiens} PDB: 2lsb_A 2k1d_A 2lej_A 2lv1_A 2lft_A 1fkc_A 1fo7_A 3haf_A 3hj5_A 1qm0_A 1qm1_A 2kun_A 3hes_A 3her_A 1b10_A 2joh_A 2fj3_A 2jom_A 2l1h_A 2l39_A ...

Probab=95.97  E-value=0.00037  Score=53.04  Aligned_cols=46  Identities=28%  Similarity=0.381  Sum_probs=16.2

Q ss_pred             ccccccCCCchhHHHHHHHHHHHhHhhhhhhhhhhhhhhhHHHHhh
Q 023810          220 EKKKSKFGGMGTGLAVGAVGGILGGLALAEGVDALEDHIADEAAEK  265 (277)
Q Consensus       220 ~~~~~~~~g~g~g~~~g~~~g~~gg~~~~~~~~~~~~~~~~~~~~~  265 (277)
                      .+.+..||.++.++++|+++|.|+|.+|+.++....-++..+.||.
T Consensus        14 ~k~Ktn~k~vAgaAaAGAVvGGlgGy~lG~amsrp~~~F~~~~Ed~   59 (142)
T 3heq_A           14 SKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPIIHFGSDYEDR   59 (142)
T ss_dssp             -----------------------CCCEECCCCCCCCCCCSSHHHHH
T ss_pred             CCCcccHHHHHHHHHhhhhhhccchHHHHhhccCCccCCCChHHHH
Confidence            3456778888889999999999999999998865555555555554

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=93.19  E-value=0.51  Score=48.01  Aligned_cols=91  Identities=12%  Similarity=0.066  Sum_probs=56.8

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CCC---CeEEeeecCCCCCCCccceeEEEecCCCCCC-CceEEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DPN---KKCSTKVDDEGDTCPYWDETLAIPLPGPVDD-DTTLIIDVV   78 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~~---~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~-~~~L~v~V~   78 (277)
                      ..+.|+|.++.++...    ...+.||.+.+  +..   ....|+. +.-..++.|||.+.|++.-.++. ...|.|+||
T Consensus       217 ~~f~i~i~~~~~~~~~----~~~~~~V~~~l~~g~~~l~~~~~T~~-~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~  291 (940)
T 2wxf_A          217 QPFSIELIEGRKVNAD----ERMKLVVQAGLFHGNEMLCKTVSSSE-VNVCSEPVWKQRLEFDISVCDLPRMARLCFALY  291 (940)
T ss_dssp             SEEEEEEEEEECCCC-------CEEEEEEEEEETTEESSCCEECCC-EESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred             CceEEEEEEecccCCC----CCceEEEEEEEEECCEEccCceeccc-ccCCCCcccceEEEcccccccCCcccEEEEEEE
Confidence            4689999999887532    34567888777  321   1233433 33367899999999987554333 567999999


Q ss_pred             EccCC--C---------CCCceeEEEEEeccee
Q 023810           79 HAGNE--E---------DTKKLIGSAKLKLKDV  100 (277)
Q Consensus        79 d~~~~--~---------~~d~~iG~~~v~L~~l  100 (277)
                      +....  .         .....||.+.++|-+.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  324 (940)
T 2wxf_A          292 AVVEKAKKARSTKKKSKKADCPIAWANLMLFDY  324 (940)
T ss_dssp             EEC----------------CEEEEEEEEESBCT
T ss_pred             EecCCccCccccccccccccceEEEEeeeEECC
Confidence            85321  0         0234788888877653

>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}

Probab=93.17  E-value=0.094  Score=28.51  Aligned_cols=21  Identities=43%  Similarity=0.585  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHhHhhhhhhhh
Q 023810          232 GLAVGAVGGILGGLALAEGVD  252 (277)
Q Consensus       232 g~~~g~~~g~~gg~~~~~~~~  252 (277)
                      .+++|++.|.|||.+++.+|+
T Consensus         6 a~AAGaVvGglGgy~lg~~ms   26 (27)
T 2lbg_A            6 AAAAGAVVGGLGGYMLGSAMS   26 (27)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHHHHHHHHhc
Confidence            678888888899999988775

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A

Probab=93.10  E-value=0.006  Score=50.62  Aligned_cols=46  Identities=15%  Similarity=0.114  Sum_probs=14.3

Q ss_pred             cccccCCCchhHHHHHHHHHHHhHhhhhhhhhh-hhh---hhhHHHHhhhh
Q 023810          221 KKKSKFGGMGTGLAVGAVGGILGGLALAEGVDA-LED---HIADEAAEKVE  267 (277)
Q Consensus       221 ~~~~~~~g~g~g~~~g~~~g~~gg~~~~~~~~~-~~~---~~~~~~~~~~~  267 (277)
                      +.++.+|+|+ ++++++++|+++|++.+.++.+ +++   ++.+..+|.+.
T Consensus        90 kp~k~~kg~~-g~a~aAa~Gag~G~LGGalLG~a~~~p~~~f~~~yee~YY  139 (219)
T 1dx0_A           90 KPSKPKTNMK-HVAGAAAAGAVVGGLGGYMLGSAMSRPLIHFGSDYEDRYY  139 (219)
T ss_dssp             ------------------------CCCSCEECCCCCCCCCCCSSHHHHHHH
T ss_pred             CCCCCCCCcc-hHHHHHHHHHHhhhhhhhhhhccccccccccCchhhhhhh
Confidence            3456666766 7888888888888888877754 666   55545555543

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=92.36  E-value=0.66  Score=47.77  Aligned_cols=94  Identities=15%  Similarity=0.175  Sum_probs=60.3

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CCCC---eEEeeecCCCCCCCccceeEEEecCCCCC-CCceEEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DPNK---KCSTKVDDEGDTCPYWDETLAIPLPGPVD-DDTTLIIDVV   78 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~~~---~~~T~v~~~~~~nP~WnE~f~f~v~~~~l-~~~~L~v~V~   78 (277)
                      ..++|+|+++..+.. ++. ...+.||.+.+  +.+.   ..+|+.  ....++.|||.++|++.-..+ ....|.|+||
T Consensus       355 ~~f~v~i~~~~~~n~-~~~-~~~~~~V~~~l~hG~~~L~~~~~T~~--~~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~  430 (1091)
T 3hhm_A          355 SALRIKILCATYVNV-NIR-DIDKIYVRTGIYHGGEPLCDNVNTQR--VPCSNPRWNEWLNYDIYIPDLPRAARLCLSIC  430 (1091)
T ss_dssp             SEEEEEEEEESCCCC-CCS-SCCCCCEEEEEESSSCSSCCEECCCC--CCTTSCEEEEEEEEEEEGGGCCTTCEEEEEEC
T ss_pred             CCEEEEEEEecCCCC-Ccc-ccceEEEEEEEEECCEEccCceeccc--cCCCCCCCCeeEEecCccccCChhcEEEEEEE
Confidence            368999999988753 222 35678888887  3222   233432  335678899999998755433 3567999999


Q ss_pred             EccCCCC---CCceeEEEEEecceecc
Q 023810           79 HAGNEED---TKKLIGSAKLKLKDVIN  102 (277)
Q Consensus        79 d~~~~~~---~d~~iG~~~v~L~~l~~  102 (277)
                      +.....+   ....||.+.++|-+...
T Consensus       431 ~~~~~~~~~~~~~~lg~~n~~lfd~~~  457 (1091)
T 3hhm_A          431 SVKGRKGAKEEHCPLAWGNINLFDYTD  457 (1091)
T ss_dssp             CCCCCC-------CCEEEEEESBCTTC
T ss_pred             EecCccCcccccceeEEeeeeeEccCC
Confidence            8543111   23479999998877543

>1tpx_A Prion protein, major prion protein; antibody, unknown function; 2.56A {Ovis aries} SCOP: d.6.1.1

Probab=90.79  E-value=0.013  Score=44.28  Aligned_cols=35  Identities=29%  Similarity=0.399  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhhhhhhhHHHHhhh
Q 023810          232 GLAVGAVGGILGGLALAEGVDALEDHIADEAAEKV  266 (277)
Q Consensus       232 g~~~g~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~  266 (277)
                      ++++|+++|.|+|.+|+.+|....-++..+.|+.+
T Consensus         5 aaaaGAvvGgl~Gy~lg~a~~r~~~~F~~~~EdrY   39 (121)
T 1tpx_A            5 AAAAGAVVGGLGGYMLGSAMSRPLIHFGNDYEDRY   39 (121)
T ss_dssp             ---------CCTTCEECCCCCCCCCCCSSHHHHHH
T ss_pred             hHHHhHHhhcchhHHHHhcccCCCCCCCCcHHHHH
Confidence            68889999999999999998766666666666553

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=87.23  E-value=0.63  Score=48.04  Aligned_cols=72  Identities=13%  Similarity=0.074  Sum_probs=46.6

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CCC---CeEEeeecCCCCCCCccceeEEEecCCCCCC-CceEEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DPN---KKCSTKVDDEGDTCPYWDETLAIPLPGPVDD-DTTLIIDVV   78 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~~---~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~-~~~L~v~V~   78 (277)
                      ..+.|+|.++.++...    ...+.||.+.+  +.+   ....|+. +....++.|||.+.|++.-.++. ...|.|+||
T Consensus       353 ~~f~i~i~~~~~~~~~----~~~~~~V~~~l~~g~~~L~~~~~T~~-~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~  427 (1092)
T 2y3a_A          353 NPFQITLVKGNKLNTE----ETVKVHVRAGLFHGTELLCKTVVSSE-ISGKNDHIWNEQLEFDINICDLPRMARLCFAVY  427 (1092)
T ss_dssp             SEEEEEECCCCCCCCC----SSCCCCCBCCEEETTEESSCCCBCCC-CCSSSCCCCCEEEEEEEESSSCCTTCEEEEECC
T ss_pred             CCEEEEEEEeccCCCC----CCceEEEEEEEEECCEEccCceeccc-ccCCCCCccceeEEeCCccccCChhcEEEEEEE
Confidence            4688999998887532    24466776555  321   1223433 34467899999999987654343 567999999


Q ss_pred             Ecc
Q 023810           79 HAG   81 (277)
Q Consensus        79 d~~   81 (277)
                      +..
T Consensus       428 ~~~  430 (1092)
T 2y3a_A          428 AVL  430 (1092)
T ss_dssp             CC-
T ss_pred             Eec
Confidence            853

>1xu0_A Prion protein, XLPRP; amphibian, polymorphism, glycoprotein, membrane protein; NMR {Xenopus laevis} SCOP: d.6.1.1

Probab=86.28  E-value=0.035  Score=42.39  Aligned_cols=35  Identities=23%  Similarity=0.497  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHhHhhhhhhhhhhhhhhhHHHHhhh
Q 023810          232 GLAVGAVGGILGGLALAEGVDALEDHIADEAAEKV  266 (277)
Q Consensus       232 g~~~g~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~  266 (277)
                      .+++|++||+++|.+|+.+|....-++....++++
T Consensus        19 ~va~aA~Ag~~~GY~lG~~~~rp~~~F~npeEerY   53 (130)
T 1xu0_A           19 SVAIGAAAGAIGGYMLGNAVGRMSYQFNNPMESRY   53 (130)
T ss_dssp             ----------CCEEEEEEECCSCCCCCSSHHHHHH
T ss_pred             HHHHHHHhhccchhhhcccCCCCCCCCCChHHHHH
Confidence            45667788889999999998877777776666553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	277
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	1e-10
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	3e-09
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	2e-08
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	7e-08
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	1e-06
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	3e-06
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	5e-06
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	6e-06
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	8e-06
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	4e-04
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	7e-04

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 1e-10
 Identities = 24/136 (17%), Positives = 53/136 (38%), Gaps = 13/136 (9%)

Query: 1   MASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLA 60
           +  + ++++T+ SAK  +N     GP+ PY  + VD   K + K ++          T+ 
Sbjct: 2   LTMKSQLQITVISAKLKENKKNWFGPS-PYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVI 60

Query: 61  IPLPGPVDDDTTLIIDVVHAGNEEDTKK--LIGSAKLKLKDVI-NDVGLGERASLTLKLK 117
           +                    + +  K   L+G+A L + + + ++    E   +TL+L 
Sbjct: 61  VTPV---------SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLG 111

Query: 118 RPSGRPHGKVDVKVAV 133
                     D+ + +
Sbjct: 112 GDKEPTETIGDLSICL 127

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 52.1 bits (124), Expect = 3e-09
 Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 15/136 (11%)

Query: 7   VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP 66
           +EV + SAK L++ ++      PY  L      +  + V +   T P W+ET    +   
Sbjct: 12  LEVVLVSAKGLEDADF-LNNMDPYVQLTCRTQDQK-SNVAEGMGTTPEWNETFIFTVSEG 69

Query: 67  VDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGK 126
             +    I D      ++     +G A + L+ V  +   G        + +      G+
Sbjct: 70  TTELKAKIFDKDVGTEDD----AVGEATIPLEPVFVE---GSIPPTAYNVVK-DEEYKGE 121

Query: 127 VDVKVAVRESRYAPPG 142
           + V +      + P G
Sbjct: 122 IWVAL-----SFKPSG 132

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 2e-08
 Identities = 14/134 (10%), Positives = 43/134 (32%), Gaps = 14/134 (10%)

Query: 3   SRYEVEVTITSAKDLKNVNW--RHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLA 60
           S ++  V +  A  +    +        PY  L++        +     +          
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 61  IPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPS 120
             +  P  ++    I ++ A    D  + +G+A   +  +     +GE+  +        
Sbjct: 61  EFILDPNQENVL-EITLMDANYVMD--ETLGTATFTVSSMK----VGEKKEVPFIFN--- 110

Query: 121 GRPHGKVDVKVAVR 134
                ++ +++++ 
Sbjct: 111 --QVTEMVLEMSLE 122

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 7e-08
 Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 11/127 (8%)

Query: 7   VEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP 66
           ++V +  A DL   ++  G + P+ +L +  ++  +       +  P W++        P
Sbjct: 8   LQVKVLKAADLLAADFS-GKSDPFCLLELGNDRLQTH--TVYKNLNPEWNKV----FTFP 60

Query: 67  VDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGK 126
           + D   ++   V   + +     +G   + L  + +    G+     LK K       G 
Sbjct: 61  IKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRD----GQPNCYVLKNKDLEQAFKGV 116

Query: 127 VDVKVAV 133
           + +++ +
Sbjct: 117 IYLEMDL 123

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 1e-06
 Identities = 17/126 (13%), Positives = 41/126 (32%), Gaps = 11/126 (8%)

Query: 2   ASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDD---EGDTCPYWDET 58
           ++   + V +  A+ L   +   G + PY  + +   KK  +K      +      ++E 
Sbjct: 12  STTNTLTVVVLKARHLPKSDV-SGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNEL 70

Query: 59  LAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR 118
               +P    ++ ++   V+ +       ++IG   L           G       ++  
Sbjct: 71  FVFDIPCESLEEISVEFLVLDS-ERGSRNEVIGRLVLGATAE------GSGGGHWKEICD 123

Query: 119 PSGRPH 124
              R  
Sbjct: 124 FPRRQI 129

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.3 bits (101), Expect = 3e-06
 Identities = 17/128 (13%), Positives = 36/128 (28%), Gaps = 11/128 (8%)

Query: 2   ASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDE---GDTCPYWDET 58
             +  + V I     L  ++     + P+  LW+ P+     K   +       P ++E 
Sbjct: 12  TQQGGLIVGIIRCVHLAAMDANGYSD-PFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEE 70

Query: 59  LAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR 118
               +        +L I V           +  S        +     GER     +  +
Sbjct: 71  FFYDIKHSDLAKKSLDISVWD-------YDIGKSNDYIGGCQLGISAKGERLKHWYECLK 123

Query: 119 PSGRPHGK 126
              +   +
Sbjct: 124 NKDKKIER 131

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 5e-06
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 5/101 (4%)

Query: 2   ASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCS--TKVDDEGDTCPYWDETL 59
               ++ V I  A +L  ++   G + PY  +++ P+KK    TKV       P ++E  
Sbjct: 31  FQNNQLLVGIIQAAELPALD-MGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQF 88

Query: 60  AIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDV 100
              +P       TL++ V    +      +IG  K+ +  V
Sbjct: 89  TFKVPYSELGGKTLVMAVYDF-DRFSKHDIIGEFKVPMNTV 128

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 6e-06
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 3/101 (2%)

Query: 2   ASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCS--TKVDDEGDTCPYWDETL 59
             R    V I  A+ L  ++ +   + PY  + + P KK    T+V       P +DET 
Sbjct: 19  FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLR-KTLDPAFDETF 77

Query: 60  AIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDV 100
                         +   + + +      +IG   + L  +
Sbjct: 78  TFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 42.2 bits (98), Expect = 8e-06
 Identities = 21/141 (14%), Positives = 42/141 (29%), Gaps = 23/141 (16%)

Query: 7   VEVTITSAKDLKNVNW----------RHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWD 56
           +++ I  A  LK   W          +     PY  L VD ++   T    +    P W 
Sbjct: 8   LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTAT-KQKTNSPAWH 66

Query: 57  ETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKL 116
           +     +              V           + +  ++ ++++            + L
Sbjct: 67  DEFVTDVCNGRKI-----ELAVFHDAPIGYDDFVANCTIQFEELLQ--NGSRHFEDWIDL 119

Query: 117 KRPSGRPHGKVDVKVAVRESR 137
           +     P GKV V + +  S 
Sbjct: 120 E-----PEGKVYVIIDLSGSS 135

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.6 bits (86), Expect = 4e-04
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 3/108 (2%)

Query: 2   ASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTC-PYWDETLA 60
               ++ V I  A DL      +G + PY  +++ P++K   +      T  P ++ET  
Sbjct: 15  YGSDQLVVRILQALDLPA-KDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQ 73

Query: 61  IPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGE 108
             +P        L   V    +      LIG   L     + +     
Sbjct: 74  FSVPLAELAQRKLHFSVYDF-DRFSRHDLIGQVVLDNLLELAEQPPDR 120

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.8 bits (84), Expect = 7e-04
 Identities = 15/124 (12%), Positives = 39/124 (31%), Gaps = 17/124 (13%)

Query: 6   EVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDD------------EGDTCP 53
            + + I  A++L   +  +G + P+  +++ P +     V +            +    P
Sbjct: 19  NLIIHILQARNLVPRD-NNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 54  YWDETLAIPLPGPVDDDTTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLT 113
            W++T+              +   V   +   +   +G   + L    +     +     
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL----SSTSHLDNTPRW 133

Query: 114 LKLK 117
             LK
Sbjct: 134 YPLK 137

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	277
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.88
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.86
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.82
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.82
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.82
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.79
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.76
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.75
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.74
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.72
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.71
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.7
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.7
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.67
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.66
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.66
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.65
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.64
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.59
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.55
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	96.24
d2yrba1	142	Fantom {Human (Homo sapiens) [TaxId: 9606]}	94.5

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=2.3e-22  Score=158.38  Aligned_cols=123  Identities=20%  Similarity=0.337  Sum_probs=102.0

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      .+|+|+|++|++|+..+.. +++||||+++++ ..+.+|++..+++.||+|||+|.|.+..   ....|+|+|||++. .
T Consensus        10 G~L~V~v~~a~~L~~~d~~-g~~Dpyv~v~~~-~~~~~t~~~~~~~~nP~Wne~f~f~v~~---~~~~L~v~V~d~d~-~   83 (136)
T d1wfja_          10 GTLEVVLVSAKGLEDADFL-NNMDPYVQLTCR-TQDQKSNVAEGMGTTPEWNETFIFTVSE---GTTELKAKIFDKDV-G   83 (136)
T ss_dssp             EEEEEEEEEEEECSSCCSS-CSSCCCEEEESS-SCEEECCCCTTCCSSCEEEEEEEEEEES---SCCEEEEEECCSSS-C
T ss_pred             EEEEEEEEEeeCCCCCCCC-CCCCccEEEEEe-eeeEEEEEEecCCCcEEEeeEEEEEEcC---ccceEEEEEEEecC-C
Confidence            6899999999999998865 899999999995 5677888755678999999999999975   24569999999986 4


Q ss_pred             CCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEecC
Q 023810           85 DTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRESR  137 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~~~  137 (277)
                      .+++|||++.|+|.++...   +.....|+.|.+ .++.+|+|+|+++|.+.+
T Consensus        84 ~~d~~iG~~~i~L~~l~~~---~~~~~~~~~l~~-~~~~~G~i~l~l~~~p~~  132 (136)
T d1wfja_          84 TEDDAVGEATIPLEPVFVE---GSIPPTAYNVVK-DEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             TTTCCSEEEEEESHHHHHH---SEEEEEEEEEEE-TTEEEEEEEEEEEEEECC
T ss_pred             CCCCEEEEEEEEhHHhccc---CCcCcEEEEecC-CCccCEEEEEEEEEEeCC
Confidence            6789999999999998764   333456777754 567789999999998753

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.2e-21  Score=152.27  Aligned_cols=120  Identities=16%  Similarity=0.286  Sum_probs=98.7

Q ss_pred             CceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccC
Q 023810            3 SRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN   82 (277)
Q Consensus         3 ~~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~   82 (277)
                      .-..|+|+|++|++|...+.. +++||||+++++ +.+++|++ +.++.||.|||+|.|.+..   ....|.|+|||++.
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~-g~~Dpyv~v~~~-~~~~~T~~-~~~t~nP~wne~f~f~v~~---~~~~L~i~V~d~~~   77 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFS-GKSDPFCLLELG-NDRLQTHT-VYKNLNPEWNKVFTFPIKD---IHDVLEVTVFDEDG   77 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSS-SCCCEEEEEEET-TEEEECCC-CSSCSSCCCCEEEEEEESC---TTCEEEEEEEEEET
T ss_pred             ccEEEEEEEEEeECCCCCCCC-CCcCeEEEEEcC-CeEEEEEe-eCCceeEEEEEEEEEEEec---cCceeEEEEEEccC
Confidence            346899999999999988865 899999999995 67889999 7789999999999999975   24689999999886


Q ss_pred             CCCCCceeEEEEEecceeccccCCCceeeEEEEee--cCCCCCceEEEEEEEEEe
Q 023810           83 EEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLK--RPSGRPHGKVDVKVAVRE  135 (277)
Q Consensus        83 ~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~--~~sg~~~G~L~l~v~~~~  135 (277)
                       .++++|||++.|+|+++....      ..|+.|.  ...++.+|+|.|+++|..
T Consensus        78 -~~~d~~lG~~~i~l~~l~~~~------~~~~~l~~~~~~~~~~G~i~l~~~~i~  125 (126)
T d2ep6a1          78 -DKPPDFLGKVAIPLLSIRDGQ------PNCYVLKNKDLEQAFKGVIYLEMDLIY  125 (126)
T ss_dssp             -TEEEEECCBCEEEGGGCCSSC------CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             -CcCcceEEEEEEEHHHCCCCC------ceEEEccccCCCCceeEEEEEEEEEEE
Confidence             467899999999999986542      2345453  346677899999999874

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.9e-19  Score=141.23  Aligned_cols=122  Identities=20%  Similarity=0.255  Sum_probs=95.7

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      ..|+|+|++|++|++.+.. +++||||+++++ ..+.+|++ ++++.||.|||.|.|.+..    ...|+|+|||++. +
T Consensus         6 ~~L~v~v~~A~~~~~~~~~-~~~dpyv~v~~~-~~~~kT~v-~~~t~nP~wne~f~f~~~~----~~~l~~~V~d~d~-~   77 (133)
T d2nq3a1           6 SQLQITVISAKLKENKKNW-FGPSPYVEVTVD-GQSKKTEK-CNNTNSPKWKQPLTVIVTP----VSKLHFRVWSHQT-L   77 (133)
T ss_dssp             EEEEEEEEEEEECCCC--C-CCCCEEEEEEET-TEEEECCC-CSSCSSCEEEEEEEEEECT----TCEEEEEEEECCS-S
T ss_pred             eEEEEEEEEeECCCcCCCC-CCcCeEEEEEEC-CeEEeeEE-EEecccEEEcceEEEEEEe----cceeEEEEEEccC-C
Confidence            5799999999999887654 789999999996 66789999 7889999999999999975    3579999999996 5


Q ss_pred             CCCceeEEEEEecceeccccCC-CceeeEEEEeecCC--CCCceEEEEEEEEE
Q 023810           85 DTKKLIGSAKLKLKDVINDVGL-GERASLTLKLKRPS--GRPHGKVDVKVAVR  134 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~~~~~-~~~~~~~~~L~~~s--g~~~G~L~l~v~~~  134 (277)
                      +++++||++.|+|.+++..... .+....++.|....  ....|+|.|.+...
T Consensus        78 ~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~  130 (133)
T d2nq3a1          78 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGL  130 (133)
T ss_dssp             SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESE
T ss_pred             CCCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeE
Confidence            7899999999999998765321 12335566665543  34568888887654

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.82  E-value=7.4e-20  Score=144.07  Aligned_cols=119  Identities=18%  Similarity=0.280  Sum_probs=96.9

Q ss_pred             eEEEEEEEEeeCCCCCC----------CCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEE
Q 023810            5 YEVEVTITSAKDLKNVN----------WRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLI   74 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~----------~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~   74 (277)
                      ..|+|+|++|++|+..+          ...+.+||||+++++.....+|++ ++++.||.|||+|.|.+..    .+.|+
T Consensus         6 G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~-~~~t~~P~Wne~f~f~v~~----~~~l~   80 (136)
T d1gmia_           6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTAT-KQKTNSPAWHDEFVTDVCN----GRKIE   80 (136)
T ss_dssp             EEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCC-CSSCSSCEEEEEEEEEEEE----ECEEE
T ss_pred             EEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeE-EcCCCCccCccEEEEEEec----CCceE
Confidence            48999999999998642          123678999999997445568888 7889999999999999964    46899


Q ss_pred             EEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEec
Q 023810           75 IDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRES  136 (277)
Q Consensus        75 v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~~  136 (277)
                      |+|||++. ..+++|||.+.|+|+++....  ......|+.|.     ++|+|.|+|+|..+
T Consensus        81 i~V~d~~~-~~~d~~iG~~~i~l~~l~~~~--~~~~~~w~~L~-----p~G~v~l~v~~~~~  134 (136)
T d1gmia_          81 LAVFHDAP-IGYDDFVANCTIQFEELLQNG--SRHFEDWIDLE-----PEGKVYVIIDLSGS  134 (136)
T ss_dssp             EEEEECCS-SSSCEEEEEEEEEHHHHTSTT--CSEEEEEEECB-----SSCEEEEEEEEEEE
T ss_pred             EEEEEecC-CCCceeEEEEEEEHHHhhhcC--CcceeEEEeCC-----CCcEEEEEEEEEeC
Confidence            99999986 478899999999999998663  23356788884     47999999999765

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1e-19  Score=140.94  Aligned_cols=120  Identities=17%  Similarity=0.327  Sum_probs=95.6

Q ss_pred             ceEEEEEEEEeeCCCCCCC--CCCCCCcEEEEEECC--CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEE
Q 023810            4 RYEVEVTITSAKDLKNVNW--RHGPNRPYAVLWVDP--NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVH   79 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~--~~g~~dpYv~v~ld~--~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d   79 (277)
                      .+.|+|+|++|++|+....  ..++.||||++++.+  ..+.+|++ +.++.||.|||+|.|.+..  .....|.|+|||
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~-~~~t~nP~wne~f~f~i~~--~~~~~L~v~V~d   78 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRH-FNNDINPVWNETFEFILDP--NQENVLEITLMD   78 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCC-CTTCSSCEEEEEEEEEECT--TSCCEEEEEEEE
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeee-cCCCccceeceeeeecccC--cccCcEEEEEEE
Confidence            4589999999999986421  126889999999943  46689998 7889999999999999975  345689999999


Q ss_pred             ccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCCceEEEEEEEEEe
Q 023810           80 AGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRPHGKVDVKVAVRE  135 (277)
Q Consensus        80 ~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~  135 (277)
                      ++.  .++++||++.|+|++|..    ++....||+|..   ..+|+|.|++.+..
T Consensus        79 ~d~--~~d~~lG~~~i~L~~l~~----~~~~~~~~~L~~---~~~g~i~~~l~~~~  125 (126)
T d1rlwa_          79 ANY--VMDETLGTATFTVSSMKV----GEKKEVPFIFNQ---VTEMVLEMSLEVAS  125 (126)
T ss_dssp             CCS--SCCEEEEEEEEEGGGSCT----TCEEEEEEEETT---TEEEEEEEEEECCC
T ss_pred             CCC--CCCCeEEEEEEEHHHccC----CCeEEEEEEccC---CCeEEEEEEEEEEe
Confidence            985  368999999999999864    344678999943   33688888888754

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=1.3e-18  Score=135.76  Aligned_cols=121  Identities=17%  Similarity=0.263  Sum_probs=92.4

Q ss_pred             eEEEEEEEEeeCCCCCCC-CCCCCCcEEEEEEC----CCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEE
Q 023810            5 YEVEVTITSAKDLKNVNW-RHGPNRPYAVLWVD----PNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVH   79 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~-~~g~~dpYv~v~ld----~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d   79 (277)
                      ..|+|+|++|++|...+. .++++||||++++.    ...+.+|++..+++.||.|||+|.|.+...  ....|.|+|||
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~--~~~~L~~~V~D   81 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP--DLALVRFMVED   81 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCG--GGCEEEEEEEE
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcc--hhceEEEEEEE
Confidence            579999999999964332 23789999999992    245678887455667999999999998652  24579999999


Q ss_pred             ccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCCC--ceEEEEEEEEEe
Q 023810           80 AGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGRP--HGKVDVKVAVRE  135 (277)
Q Consensus        80 ~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~~--~G~L~l~v~~~~  135 (277)
                      ++. .+++++||++.|+|+++...       ..+++|++..++.  .++|.|+|++.+
T Consensus        82 ~d~-~~~d~~iG~~~i~l~~l~~g-------~~~~~L~~~~g~~~~~~~L~v~i~~~d  131 (131)
T d1qasa2          82 YDS-SSKNDFIGQSTIPWNSLKQG-------YRHVHLLSKNGDQHPSATLFVKISIQD  131 (131)
T ss_dssp             CCT-TTCCEEEEEEEEEGGGBCCE-------EEEEEEECTTSCEEEEEEEEEEEEEEC
T ss_pred             ecC-CCCCcEEEEEEEEEeccCCC-------CEEEECCCCCcCCCCCCEEEEEEEEEC
Confidence            986 46889999999999987543       3478888877764  578888888753

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.7e-18  Score=134.96  Aligned_cols=110  Identities=22%  Similarity=0.228  Sum_probs=87.0

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC--CCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEcc
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD--PNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAG   81 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld--~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~   81 (277)
                      ...|+|+|++|++|...+.. +.+||||++++.  ...+.+|++ ++++.||+|||+|.|.+....+....|.|+|||++
T Consensus        17 ~~~L~V~V~~a~~L~~~~~~-g~~dpyv~v~l~~~~~~~~kT~v-~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~   94 (130)
T d1dqva1          17 SDQLVVRILQALDLPAKDSN-GFSDPYVKIYLLPDRKKKFQTKV-HRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   94 (130)
T ss_dssp             SCEEEEEEEEEECCCCCSTT-SCCCEEEEEECTTSTTSCEECCC-CCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCEEEEEEEeeeCCccccCC-CCcceEEEEEEccCCCceEecee-EcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcC
Confidence            35899999999999887754 889999999993  345689999 78899999999999998765556678999999998


Q ss_pred             CCCCCCceeEEEEEecceeccccCCCceeeEEEEeec
Q 023810           82 NEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR  118 (277)
Q Consensus        82 ~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~  118 (277)
                      . ..++++||++.|++...+....  .....|++|.+
T Consensus        95 ~-~~~d~~iG~~~i~~~~~l~~~~--~~~~~W~~L~~  128 (130)
T d1dqva1          95 R-FSRHDLIGQVVLDNLLELAEQP--PDRPLWRDILE  128 (130)
T ss_dssp             S-SSCCCEEEEEECCCTTGGGSSC--SSCCCCEECBC
T ss_pred             C-CCCCceEEEEEECchhhhhcCC--CCCcEEEeccc
Confidence            6 4788999999998654433221  22346888754

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=2.9e-18  Score=135.76  Aligned_cols=106  Identities=23%  Similarity=0.322  Sum_probs=87.8

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGN   82 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~   82 (277)
                      ..|+|+|++|++|+..+.. +.+||||++++  +...+.+|++ ++++.||.|||+|.|.+....+....|.|+|||.+.
T Consensus        34 ~~L~V~V~~a~~L~~~~~~-g~~dpyV~v~l~~~~~~~~kT~~-~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~  111 (143)
T d1rsya_          34 NQLLVGIIQAAELPALDMG-GTSDPYVKVFLLPDKKKKFETKV-HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  111 (143)
T ss_dssp             TEEEEEEEEEESCCCCSTT-SCCCEEEEEEEETTCCSCEECCC-CTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CEEEEEEEEccCCCCCCCC-CCCCeEEEEEEcCCCCeeEEEEE-eccccCcceeeeeEEEEEeeccCCceEEEEEEEcCC
Confidence            4799999999999887754 88999999998  3356689998 788999999999999986544456789999999986


Q ss_pred             CCCCCceeEEEEEecceeccccCCCceeeEEEEee
Q 023810           83 EEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLK  117 (277)
Q Consensus        83 ~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~  117 (277)
                       .+++++||.+.|+|.++...    .....||+|.
T Consensus       112 -~~~~~~iG~~~i~L~~~~~~----~~~~~W~~L~  141 (143)
T d1rsya_         112 -FSKHDIIGEFKVPMNTVDFG----HVTEEWRDLQ  141 (143)
T ss_dssp             -SSCCEEEEEEEEEGGGCCCS----SCEEEEEECB
T ss_pred             -CCCCcEEEEEEEEchhccCC----CCCccEEeCC
Confidence             46888999999999998543    3346788884

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=9.4e-18  Score=130.88  Aligned_cols=105  Identities=22%  Similarity=0.291  Sum_probs=85.7

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC----CCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD----PNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld----~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|+|++|++|...+.. +.+||||++++.    ...+.+|++ +.++.||+|||+|.|.+... .....|.|+|||.
T Consensus        15 ~~L~V~V~~a~~L~~~d~~-g~~DpYv~v~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~v~~~-~~~~~L~i~V~d~   91 (132)
T d1a25a_          15 EVLIVVVRDAKNLVPMDPN-GLSDPYVKLKLIPDPKSESKQKTKT-IKCSLNPEWNETFRFQLKES-DKDRRLSVEIWDW   91 (132)
T ss_dssp             SEEEEEEEEEESCCCCSTT-SCCCEEEEEEEESCTTCSSCEECCC-CSSCSSCEEEEEEEEECCSG-GGGCEEEEEEEEC
T ss_pred             CEEEEEEEeeeCCCCCCCC-CCcCeEEEEEEccCCCCccccEEee-ecCCCCCccceEEEEEeEcc-ccCCEEeEEEEec
Confidence            4799999999999988754 889999999982    245689998 77899999999999998752 2245799999999


Q ss_pred             cCCCCCCceeEEEEEecceeccccCCCceeeEEEEeec
Q 023810           81 GNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR  118 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~  118 (277)
                      +. .++++|||.+.|+|.+|...     ....||+|..
T Consensus        92 d~-~~~d~~iG~~~i~l~~l~~~-----~~~~W~~L~~  123 (132)
T d1a25a_          92 DL-TSRNDFMGSLSFGISELQKA-----GVDGWFKLLS  123 (132)
T ss_dssp             CS-SSCCEEEEEEEEEHHHHTTC-----CEEEEEECBC
T ss_pred             CC-CCCCcEeEEEEEeHHHcCCC-----CCCeEEECCC
Confidence            86 47889999999999997543     1356899854

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.5e-17  Score=128.73  Aligned_cols=97  Identities=19%  Similarity=0.261  Sum_probs=80.2

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CCCCeEEeeecCCCCCCCccceeEEEe-cCCCCCCCceEEEEEEEcc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DPNKKCSTKVDDEGDTCPYWDETLAIP-LPGPVDDDTTLIIDVVHAG   81 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~~~~~~T~v~~~~~~nP~WnE~f~f~-v~~~~l~~~~L~v~V~d~~   81 (277)
                      ..|+|+|++|++|...+...+.+||||++++  +...+++|++ +.++.||.|||+|.|. +....+....|.|+|||.+
T Consensus        22 ~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v-~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d  100 (138)
T d1ugka_          22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRV-LRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD  100 (138)
T ss_dssp             TEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCC-CSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEEC
T ss_pred             CEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCee-EeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECC
Confidence            5799999999999887654345799999999  4456789999 7889999999999996 5544555678999999998


Q ss_pred             CCCCCCceeEEEEEecceeccc
Q 023810           82 NEEDTKKLIGSAKLKLKDVIND  103 (277)
Q Consensus        82 ~~~~~d~~iG~~~v~L~~l~~~  103 (277)
                      . ..++++||++.|+|+++...
T Consensus       101 ~-~~~~~~iG~~~i~L~~~~~~  121 (138)
T d1ugka_         101 R-FSRDDIIGEVLIPLSGIELS  121 (138)
T ss_dssp             S-SCCCCCCEEEEEECTTCCCT
T ss_pred             C-CCCCcEEEEEEEEcccccCC
Confidence            6 46889999999999998543

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=2e-17  Score=128.61  Aligned_cols=101  Identities=20%  Similarity=0.216  Sum_probs=80.3

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEccCCC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAGNEE   84 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~~~~   84 (277)
                      ..|+|+|++|++|...+    +.||||++.++ +.+.+|++ .+ +.||.|||+|.|.+..   ....|.|+|||++.  
T Consensus         2 ~~L~V~v~~a~~l~~~~----~~dpYv~l~~~-~~k~~T~~-~k-~~nP~Wne~f~f~v~~---~~~~L~v~V~d~~~--   69 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE----KFNTYVTLKVQ-NVKSTTIA-VR-GSQPSWEQDFMFEINR---LDLGLTVEVWNKGL--   69 (128)
T ss_dssp             EEEEEEEEEEECSSCGG----GCEEEEEEEET-TEEEECCC-EE-SSSCEEEEEEEEEECC---CSSEEEEEEEECCS--
T ss_pred             eEEEEEEEEEECCCCCC----CcCeEEEEEeC-CEEEEEEE-ec-CCCCeEEEEEEEeecc---ccceEEEEEEeCCC--
Confidence            37999999999998754    56999999995 67788887 44 5699999999999976   24679999999985  


Q ss_pred             CCCceeEEEEEecceeccccCCCceeeEEEEeecC
Q 023810           85 DTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRP  119 (277)
Q Consensus        85 ~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~  119 (277)
                      ..|++||++.|+|++|.....  .....||.|..+
T Consensus        70 ~~d~~lG~~~I~L~~l~~~~~--~~~~~W~~L~~~  102 (128)
T d2cjta1          70 IWDTMVGTVWIPLRTIRQSNE--EGPGEWLTLDSQ  102 (128)
T ss_dssp             SCEEEEEEEEEEGGGSCBCSS--CCCCEEEECBC-
T ss_pred             cCCcceEEEEEEehhhccCCC--CCCCeeEECCcc
Confidence            368999999999999975532  123468888543

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.6e-17  Score=125.73  Aligned_cols=106  Identities=23%  Similarity=0.308  Sum_probs=80.7

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CC--CCeEEeeecCCCCCCCccceeEEEe-cCCCCCCCceEEEEEE
Q 023810            4 RYEVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DP--NKKCSTKVDDEGDTCPYWDETLAIP-LPGPVDDDTTLIIDVV   78 (277)
Q Consensus         4 ~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~--~~~~~T~v~~~~~~nP~WnE~f~f~-v~~~~l~~~~L~v~V~   78 (277)
                      ...|+|+|++|++|...+.. +..||||++++  +.  ..+.+|++ ++++.||.|||+|.|. +....+....|.|+||
T Consensus        13 ~~~L~V~V~~a~~L~~~~~~-~~~dpyVkv~l~~~~~~~~~~kT~~-~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~   90 (125)
T d2bwqa1          13 GHQLIVTILGAKDLPSREDG-RPRNPYVKIYFLPDRSDKNKRRTKT-VKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   90 (125)
T ss_dssp             TTEEEEEEEEEESCCCCTTS-CCBCEEEEEEEESSCSGGGEEECCC-CSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             CCEEEEEEEEeECCCCcCCC-CCCCEEEEEEEeCCCCCccccccCE-EcCCCCCEEccEEEEeeeChhhcCCCEEEEEEE
Confidence            35899999999999877644 88999999998  21  34578999 7789999999999997 5544455668999999


Q ss_pred             EccCCC-CCCceeEEEEEecceeccccCCCceeeEEEEe
Q 023810           79 HAGNEE-DTKKLIGSAKLKLKDVINDVGLGERASLTLKL  116 (277)
Q Consensus        79 d~~~~~-~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L  116 (277)
                      |.+... .+++|||++.|+|+++....     ...||+|
T Consensus        91 d~~~~~~~~~~~iG~~~i~l~~~~~~~-----~~~Wy~L  124 (125)
T d2bwqa1          91 DQARVREEESEFLGEILIELETALLDD-----EPHWYKL  124 (125)
T ss_dssp             EC-------CEEEEEEEEEGGGCCCSS-----CEEEEEC
T ss_pred             ECCCCCCCCCeeEEEEEEEchhcCCCC-----CCEEEeC
Confidence            988532 34569999999999886542     2358887

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=3.3e-18  Score=134.85  Aligned_cols=109  Identities=17%  Similarity=0.197  Sum_probs=85.5

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC-------------CeEEeeecCCCCCCCccceeEEEec-CCCCCCC
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN-------------KKCSTKVDDEGDTCPYWDETLAIPL-PGPVDDD   70 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~-------------~~~~T~v~~~~~~nP~WnE~f~f~v-~~~~l~~   70 (277)
                      ..|+|+|++|++|...+.. +.+||||++++...             .+.+|++ ++++.||.|||+|.|.+ ....+..
T Consensus        18 ~~L~V~V~~A~~L~~~d~~-g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~~~~~~~~~~   95 (142)
T d1rh8a_          18 GNLIIHILQARNLVPRDNN-GYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKY-VQKSLNPEWNQTVIYKSISMEQLMK   95 (142)
T ss_dssp             TEEEEEEEEEESCCCCSSS-SCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTT-THHHHSCEEEEEEEECSCCHHHHTT
T ss_pred             CEEEEEEEEeECCCCcCCC-CCCCcCEEEEEecCcccccccccCCCceeeeccC-CcCCCCceeEEEEEEeeecccccCC
Confidence            4799999999999988754 88999999998321             1246877 67789999999999984 3223456


Q ss_pred             ceEEEEEEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCC
Q 023810           71 TTLIIDVVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPS  120 (277)
Q Consensus        71 ~~L~v~V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~s  120 (277)
                      ..|.|+|||++. .++++|||++.|+|.++....    ....||.|...+
T Consensus        96 ~~L~i~V~d~d~-~~~~~~lG~~~i~L~~l~~~~----~~~~W~~L~~~~  140 (142)
T d1rh8a_          96 KTLEVTVWDYDR-FSSNDFLGEVLIDLSSTSHLD----NTPRWYPLKEQT  140 (142)
T ss_dssp             CEEEEEEEEECS-SSCEEEEEEEEEETTSCGGGT----TCCEEEECBCCC
T ss_pred             CEEEEEEEEecC-CCCCeeeEEEEEEhHHcCCCC----CceEEEECcCcC
Confidence            789999999986 467899999999999986542    245789986543

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.2e-16  Score=124.00  Aligned_cols=104  Identities=20%  Similarity=0.183  Sum_probs=84.8

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC---CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEcc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN---KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHAG   81 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~---~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~~   81 (277)
                      ..|+|+|++|++|..   . +.+||||++.+.+.   .+.+|++ ++++.||+|||+|.|.|....+....|.|+|||.+
T Consensus        26 ~~L~V~v~~a~~L~~---~-g~~dpyVkv~l~~~~~~~~~kT~v-~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~  100 (138)
T d1wfma_          26 AELFVTRLEAVTSNH---D-GGCDCYVQGSVANRTGSVEAQTAL-KKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCD  100 (138)
T ss_dssp             TEEEEEEEEEECCCC---S-SCCCEEEEEEEEETTEEEEEECCC-CCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECC
T ss_pred             CEEEEEEEEcCCCCC---C-CCcCcEEEEEECCCCCccceeeeE-ECCCCCceEeeeEEEEeeehhccceEEEEEEeeec
Confidence            589999999999953   2 67899999999432   3468888 78899999999999999776666788999999998


Q ss_pred             CCCCCCceeEEEEEecceeccccCCCceeeEEEEeec
Q 023810           82 NEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKR  118 (277)
Q Consensus        82 ~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~  118 (277)
                      . ..++++||++.|+|.++....    ....|+.|+.
T Consensus       101 ~-~~~~~~iG~~~i~L~~l~~~~----~~~~W~~L~~  132 (138)
T d1wfma_         101 R-FSRHSVAGELRLGLDGTSVPL----GAAQWGELKT  132 (138)
T ss_dssp             S-SCTTSCSEEEEEESSSSSSCT----TCCEEEECCC
T ss_pred             c-cccceeeeEEEEEhHHccCCC----CceEeEeCCC
Confidence            6 478899999999999985432    2467888854

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=5.4e-16  Score=119.59  Aligned_cols=117  Identities=14%  Similarity=0.200  Sum_probs=88.1

Q ss_pred             CCCceEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEE
Q 023810            1 MASRYEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIID   76 (277)
Q Consensus         1 m~~~~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~   76 (277)
                      ||.--.+.|.+..+..++..   .+.+||||++.++.    ..+.+|++ +++++||+|||+|.|.|..    .+.|.|.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~---~~~~dPY~~v~l~~~~~~~~~~~t~~-~kkT~nP~WnE~F~~~v~~----~~~l~i~   72 (123)
T d1bdya_           1 MAPFLRISFNSYELGSLQAE---DDASQPFCAVKMKEALTTDRGKTLVQ-KKPTMYPEWKSTFDAHIYE----GRVIQIV   72 (123)
T ss_dssp             CCEEEEEEEEEEECCTTCCC---CCSCCCEEEEEEEEECCGGGTTBEEE-CSCCBCCCTTCEEEEECCT----TCEEEEE
T ss_pred             CCCeEEEEEEEeecccCCCC---CCCCCCEEEEEEcCccccccceEEEE-eCCCCCcccceEEEEEEcc----ccEEEEE
Confidence            66654555665666555543   37899999999942    12356777 7889999999999999975    4679999


Q ss_pred             EEEccCCCCCCceeEEEEEecceeccccC-CCceeeEEEEeecCCCCCceEEEEEEEEEe
Q 023810           77 VVHAGNEEDTKKLIGSAKLKLKDVINDVG-LGERASLTLKLKRPSGRPHGKVDVKVAVRE  135 (277)
Q Consensus        77 V~d~~~~~~~d~~iG~~~v~L~~l~~~~~-~~~~~~~~~~L~~~sg~~~G~L~l~v~~~~  135 (277)
                      |||++     ++++|.+.|.+.+|..... .+.....|+.|.     ++|+|.|+++|..
T Consensus        73 V~d~d-----d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~-----~~Gkl~l~v~~f~  122 (123)
T d1bdya_          73 LMRAA-----EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ-----PQAKVLMCVQYFL  122 (123)
T ss_dssp             EEEET-----TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB-----SSCEEEEEEEEEE
T ss_pred             EEEcc-----ccccCccEEehhheeeccccCCCcccEEEeCC-----CCEEEEEEEEEec
Confidence            99875     4799999999998875432 234567899984     4799999999864

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=5.5e-16  Score=121.12  Aligned_cols=94  Identities=18%  Similarity=0.247  Sum_probs=78.8

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEEC----CCCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVD----PNKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld----~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|+|++|++|...+.. +..||||++++.    ...+.+|++ ++++.||.|||+|.|.|....+....|.|.||+.
T Consensus        15 ~~L~V~v~~a~nL~~~~~~-~~~dpyv~v~l~~~~~~~~~~kT~v-~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~   92 (137)
T d2cm5a1          15 GGLIVGIIRCVHLAAMDAN-GYSDPFVKLWLKPDMGKKAKHKTQI-KKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDY   92 (137)
T ss_dssp             TEEEEEEEEEESCCCCSTT-SCCCEEEEEEEETC---CCEEECCC-CCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CEEEEEEEEEECCCCCCCC-CCcCeEEEEEEEcCCccceeecCEe-EcCCCCCccceEEEEEeEHHHccccEEEEEeeeC
Confidence            4799999999999877644 789999999982    235678998 7789999999999999976555667899999998


Q ss_pred             cCCCCCCceeEEEEEecceec
Q 023810           81 GNEEDTKKLIGSAKLKLKDVI  101 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~  101 (277)
                      +. ..++++||++.|+|.++.
T Consensus        93 ~~-~~~~~~iG~~~i~l~~~~  112 (137)
T d2cm5a1          93 DI-GKSNDYIGGCQLGISAKG  112 (137)
T ss_dssp             CS-SSCCEEEEEEEEETTCCH
T ss_pred             CC-CCCCCEEEEEEeCccccC
Confidence            86 478899999999997643

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=3.4e-16  Score=122.86  Aligned_cols=93  Identities=16%  Similarity=0.249  Sum_probs=74.2

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE--CCC--CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV--DPN--KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l--d~~--~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|.|+|++|++|...+.. +..||||++++  +..  .+.+|++ ++++.||.|||+|.|.+....++...|.|+|||.
T Consensus        15 ~~L~V~v~~a~~L~~~~~~-~~~dpyvkv~l~~~~~~~~~~kT~~-~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~   92 (138)
T d1w15a_          15 NTLTVVVLKARHLPKSDVS-GLSDPYVKVNLYHAKKRISKKKTHV-KKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS   92 (138)
T ss_dssp             TEEEEEEEEEESCC-------CCCEEEEEEEEETTEEEEEEECCC-CCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred             CEEEEEEEEeECCCCCCCC-CCcCEEEEEEEeCCcccCcccccee-ECCCCCCeECcEEEEEecHHHhCccEEEEEEEeC
Confidence            4799999999999887754 78999999998  222  3457888 7789999999999999987667777899999999


Q ss_pred             cCCCCCCceeEEEEEeccee
Q 023810           81 GNEEDTKKLIGSAKLKLKDV  100 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l  100 (277)
                      +. ..++++||++.|+|...
T Consensus        93 ~~-~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          93 ER-GSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             CT-TSCCEEEEEEEESTTCC
T ss_pred             CC-CCCCCEEEEEEEcchhC
Confidence            86 46889999999998764

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=6.9e-16  Score=123.75  Aligned_cols=111  Identities=19%  Similarity=0.288  Sum_probs=86.0

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECCC----CeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDPN----KKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~~----~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|.|+|++|++|+..+.. +.+||||++.+...    .+.+|++ ++++.||+|||+|.|.|....+....|.|+||+.
T Consensus        25 ~~L~V~V~~a~~L~~~~~~-~~~dpyV~v~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~  102 (157)
T d1uowa_          25 GKLTVVILEAKNLKKMDVG-GLSDPYVKIHLMQNGKRLKKKKTTI-KKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  102 (157)
T ss_dssp             TEEEEEEEEEESCCCCSTT-SCCCEEEEEEEEETTEEEEEEECCC-CCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CEEEEEEEEEEEcccccCC-CCCCeeEEEEEecCCccccceeccc-ccCCCCcccCCeEEEEecHHHcCccEEEEEEccc
Confidence            4799999999999877754 88999999998322    2357888 7889999999999999987556667899999999


Q ss_pred             cCCCCCCceeEEEEEecceecccc--------CCCceeeEEEEeec
Q 023810           81 GNEEDTKKLIGSAKLKLKDVINDV--------GLGERASLTLKLKR  118 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~~~~--------~~~~~~~~~~~L~~  118 (277)
                      +. ..++++||++.|+|..+....        ...+....|+.|+.
T Consensus       103 ~~-~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~  147 (157)
T d1uowa_         103 DK-IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (157)
T ss_dssp             CS-SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             CC-CCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence            87 478899999999996532110        01233467888854

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.3e-14  Score=111.48  Aligned_cols=112  Identities=18%  Similarity=0.323  Sum_probs=82.0

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEE-----CCCCeEEeeec-CCCCCCCcccee-EEE-ecCCCCCCCceEEEE
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWV-----DPNKKCSTKVD-DEGDTCPYWDET-LAI-PLPGPVDDDTTLIID   76 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~l-----d~~~~~~T~v~-~~~~~nP~WnE~-f~f-~v~~~~l~~~~L~v~   76 (277)
                      .+|.|+|++|++|..     .+.||||++.+     |...+.+|++. .+++.||.|||+ |.| .+..  .+...|.|+
T Consensus         1 ~tl~V~Visaq~L~~-----~~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~--~~l~~L~f~   73 (122)
T d2zkmx2           1 TTLSITVISGQFLSE-----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILM--PELASLRVA   73 (122)
T ss_dssp             EEEEEEEEEEESCCS-----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESS--GGGCEEEEE
T ss_pred             CEEEEEEEEeeCCCC-----CCCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCC--CcccEEEEE
Confidence            379999999999974     35699999998     23344555543 467899999976 444 3443  233579999


Q ss_pred             EEEccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCC--CceEEEEEEEEEe
Q 023810           77 VVHAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGR--PHGKVDVKVAVRE  135 (277)
Q Consensus        77 V~d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~--~~G~L~l~v~~~~  135 (277)
                      |||++     ++|||++.|||+.|..+       .++++|+.+.++  ...+|.+.+++.+
T Consensus        74 V~D~d-----~~~lG~~~ipl~~l~~G-------yR~vpL~~~~g~~l~~~~L~v~i~~~~  122 (122)
T d2zkmx2          74 VMEEG-----NKFLGHRIIPINALNSG-------YHHLCLHSESNMPLTMPALFIFLEMKD  122 (122)
T ss_dssp             EEETT-----TEEEEEEEEEGGGBCCE-------EEEEEEECTTCCEEEEEEEEEEEEEEC
T ss_pred             EECCC-----CCEEEEEEEEcccCcCC-------ceEEEccCCCcCCCCCceEEEEEEEEC
Confidence            99975     58999999999987654       356788887776  3677777777653

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.2e-15  Score=120.60  Aligned_cols=94  Identities=22%  Similarity=0.267  Sum_probs=78.5

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCCCcEEEEEECC----CCeEEeeecCCCCCCCccceeEEEecCCCCCCCceEEEEEEEc
Q 023810            5 YEVEVTITSAKDLKNVNWRHGPNRPYAVLWVDP----NKKCSTKVDDEGDTCPYWDETLAIPLPGPVDDDTTLIIDVVHA   80 (277)
Q Consensus         5 ~~L~V~v~~A~~L~~~~~~~g~~dpYv~v~ld~----~~~~~T~v~~~~~~nP~WnE~f~f~v~~~~l~~~~L~v~V~d~   80 (277)
                      ..|+|+|++|++|...+.. +.+||||++.+.+    ..+.+|++ ++++.||.|||+|.|.|....+....|.|.||+.
T Consensus        20 ~~L~V~V~~a~nL~~~~~~-~~~dpyv~v~l~~~~~~~~~~kT~~-~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~   97 (145)
T d1dqva2          20 GLLTVTIIKASNLKAMDLT-GFSDPYVKASLISEGRRLKKRKTSI-KKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY   97 (145)
T ss_dssp             TEEEEEEEEEESCCCCSSS-SCCCEEEEECCCTTCCTTSCEECCC-CCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             CEEEEEEEEEeCCCCcCCC-CCcCceEEEEEccCCccceeecCEE-EeCCCCceecceEEEEEehhhcCCCEEEEEEEec
Confidence            4799999999999877754 7889999999832    23568998 7889999999999999876556667899999999


Q ss_pred             cCCCCCCceeEEEEEecceec
Q 023810           81 GNEEDTKKLIGSAKLKLKDVI  101 (277)
Q Consensus        81 ~~~~~~d~~iG~~~v~L~~l~  101 (277)
                      +. ..++++||++.|+|..+.
T Consensus        98 ~~-~~~~~~iG~~~i~l~~~~  117 (145)
T d1dqva2          98 DC-IGHNEVIGVCRVGPEAAD  117 (145)
T ss_dssp             CS-SSCCEEEEECCCSSCTTC
T ss_pred             CC-CCCCcEEEEEEECchHcC
Confidence            86 468889999999997653

>d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Fantom
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.081  Score=39.55  Aligned_cols=122  Identities=17%  Similarity=0.150  Sum_probs=79.0

Q ss_pred             EEEEEEEEeeCCCCC-CCC-CCCCCcEEEEEECCCCeEEeeecCCCCCCCccceeEEEecCCC-----CCCCceEEEEEE
Q 023810            6 EVEVTITSAKDLKNV-NWR-HGPNRPYAVLWVDPNKKCSTKVDDEGDTCPYWDETLAIPLPGP-----VDDDTTLIIDVV   78 (277)
Q Consensus         6 ~L~V~v~~A~~L~~~-~~~-~g~~dpYv~v~ld~~~~~~T~v~~~~~~nP~WnE~f~f~v~~~-----~l~~~~L~v~V~   78 (277)
                      .++|.|.++.--+.. ... ......||.+.+-..+.+.|.+ . .+.+|.+|-+..|.|..+     -++...|.|+++
T Consensus        11 lfEihi~~~~~s~e~l~~~~d~~p~tF~T~~Fyd~Etq~TPv-~-~g~~p~ynfts~Y~V~~d~~fl~YL~~~~~~lelh   88 (142)
T d2yrba1          11 LFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPV-V-RGLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVH   88 (142)
T ss_dssp             EEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCC-E-ESSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEE
T ss_pred             EEEEEEeeEEEcHHHHhhccCCCCcEEEEEEEEeeeeecCce-e-cCCCCcceeEEEEEEccCHHHHHHHhhCCEEEEEE
Confidence            567777776221110 001 0223346666663356677887 3 478999999988887664     234567899999


Q ss_pred             EccCCCCCCceeEEEEEecceeccccCCCceeeEEEEeecCCCC--CceEEEEEEEEE
Q 023810           79 HAGNEEDTKKLIGSAKLKLKDVINDVGLGERASLTLKLKRPSGR--PHGKVDVKVAVR  134 (277)
Q Consensus        79 d~~~~~~~d~~iG~~~v~L~~l~~~~~~~~~~~~~~~L~~~sg~--~~G~L~l~v~~~  134 (277)
                      ....  .+-..|+.+.|.|.++++..  + +...+-.|+...+.  .-|.|..-++++
T Consensus        89 qa~g--~~~~tvA~g~i~l~~lLd~~--~-r~~~s~~l~g~~~~~~~~G~leyw~rlr  141 (142)
T d2yrba1          89 QAYS--TEYETIAACQLKFHEILEKS--G-RIFCTASLIGTKGDIPNFGTVEYWFRLR  141 (142)
T ss_dssp             EECS--SCEEEEEEEEECCSHHHHCC--S-CEEEEEEECBSSSCCTTSEEEEEEEEEE
T ss_pred             eecC--CCcceeEEEEEEhhHhhCcc--c-cccceeEEEccCCCcceEEEEEEEEEEE
Confidence            8763  23357999999999999764  2 34556667665554  479998888764