Citrus Sinensis ID: 023819

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MITKPNLITANPSHSLTPFLKFESRIPIYFPKPSISHSKFISLTSKKHSFLVPFCCFNPTKPHNSSELLNRVSENSVPEEGELKTDYNVQVAAANVPSFLPPAKLSLSDQAFFLLAFIACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGTLAHQQTISIIQERASLPIISLQPVVAGAAKKTSHAVGQATKTLMNMISRGELSSENEDDSEIDRVEI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEcccccccccccccccccccccccccccccEEEcccccccEEEEEEEcccccccccHHHEcccccccccccccccccccEEEccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEc
Coil and Loop (DISEMBL)
mitkpnlitanpshsltpflkfesripiyfpkpsishskfisltskkhsflvpfccfnptkphnssellnrvsensvpeegelktdyNVQVaaanvpsflppaklslsDQAFFLLAFIACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGTLAHQQTISIIQEraslpiislqpvvagaakktshAVGQATKTLMNMIsrgelsseneddseidrvei
Flexible Loop (DISEMBL)
mitkpnlitanpshsltpFLKFESRIPIYFPKPSISHSKFISLTSKKHSFLVPFCCFNPTKPHNSSELLNRVSENSVPEEGELKTDYNVQVAAANVPSFLPPAKLSLSDQAFFLLAFIACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGTLAHQQTISIIQERASLPIISLQPVVAGAAKKTSHAVGQATKTLMNMIsrgelsseneddseidrvei
Low Complexity Region (SEG)
MITKPNLITANPSHSLTPFLKFESRIPIYFPKPSISHSKFISLTSKKHSFLVPFCCFNPTKPHNSSELLNRVSENSVPEEGELKTDYNVQVAAANVPSFLPPAKLSLSDQAFFLLAFIACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGTLAHQQTISIIQERASLPIISLQPVVAGAAKKTSHAVGQATKTLMNMISRGELSSENEDDSEIDRVEI
Disordered region (IsUnstruct)
***************LTPFLKFESRIPIYFPKPSISHSKFISLTSKKHSFLVPFCCFN***************************DYNVQVAAANVPSFLPPAKLSLSDQAFFLLAFIACTTSVAFTSLVVAAIPALYAMGRAATSL*****************IRLSGMEISDLTLEL****************AVQAAEAGIRQIGTLAHQQTISIIQERASLPIISLQPVVAGAA**************************************
Disordered Region (DISOPRED)
********TANPSHSLTPFLKFESRIPIYFPKPSISHSKF*****************************************************************SLSDQAFFLLAFIACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELS*****************************************************VAGA************************************V**
Disordered Region (DISEMBL)
MITKPNLITANPSHSLTPFLKFESRIPIYFPKPSISHSKFISLTSKKHSFLVPFCCFNPTKPHNSSELLNRVSENSVPEEGELKTDYNVQVAAANVPSFLPPAKLSLSDQAFFLLAFIACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADG**********AEAGIRQIGTLAHQQTISIIQERASLPIISLQPVV**********VGQATKTLMNMISRG*****************
Disordered Region (DISPRO)
*ITKPNLITANPSHSLTPFLKFESRIPIYFPKPSISHSKFISLTSKKHSFLVPFCCFNP******************PEEGELKTDYNVQVAAANVPSFLPPAKLSLSDQAFFLLAFIACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGTLAHQQTISIIQERASLPIISLQPVVAGAAKKTSHAVGQATKTLMNMISRG***********IDR***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MITKPNLITANPSHSLTPFLKFESRIPIYFPKPSISHSKFISLTSKKHSFLVPFCCFNPTKPHNSSELLNRVSENSVPEEGELKTDYNVQVAAANVPSFLPPAKLSLSDQAFFLLAFIACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGTLAHQQTISIIQERASLPIISLQPVVAGAAKKTSHAVGQATKTLMNMISRGELSSENEDDSEIDRVEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
224109050	283	predicted protein [Populus trichocarpa]	0.978	0.954	0.680	6e-88
255569012	283	conserved hypothetical protein [Ricinus	0.974	0.950	0.650	2e-87
224123658	293	predicted protein [Populus trichocarpa]	0.967	0.911	0.644	5e-87
224123654	209	predicted protein [Populus trichocarpa]	0.731	0.966	0.765	8e-79
225462397	271	PREDICTED: uncharacterized protein LOC10	0.963	0.981	0.64	1e-76
296085178	254	unnamed protein product [Vitis vinifera]	0.887	0.964	0.681	7e-76
356538658	255	PREDICTED: uncharacterized protein LOC10	0.887	0.960	0.597	1e-72
388517977	266	unknown [Lotus japonicus]	0.815	0.845	0.627	8e-72
255647614	255	unknown [Glycine max]	0.887	0.960	0.593	9e-72
30680683	257	uncharacterized protein [Arabidopsis tha	0.742	0.797	0.671	1e-67

>gi|224109050|ref|XP_002333314.1| predicted protein [Populus trichocarpa] gi|222836188|gb|EEE74609.1| predicted protein [Populus trichocarpa]

 Score =  329 bits (844), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 194/285 (68%), Positives = 218/285 (76%), Gaps = 15/285 (5%)

Query: 4   KPNLITANPSHSLTPFLKFESRIPIYFPKPSISH-SKFISL-----TSKKHSFLVPFCCF 57
           KPNL+TA+ S  +   L   SR  I FP+ SI H + F+S+      S KH  L+P C  
Sbjct: 2   KPNLLTAD-SFLIFNSLTLLSRNSIPFPRNSIPHPNHFLSIVSPHPNSSKHYRLLPICSS 60

Query: 58  -NPTKPHNS---SELLNRVSENSVPEEGELKTDYNVQVAAANVPSFLPP-AKLSLSDQAF 112
            NP +  +S    E LN  S   V    EL+ + NVQVA   VPS++    KLSLSDQAF
Sbjct: 61  SNPARKQSSPANEESLN--SNVEVLGGDELERNLNVQVANPVVPSYIQSWTKLSLSDQAF 118

Query: 113 FLLAFIACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEI 172
           FLL+FIA TTS+AFT LV AA+P L+A+GRAATSLSKLADTAREELPSTMAAIRLSGMEI
Sbjct: 119 FLLSFIAFTTSIAFTCLVAAAVPTLFAVGRAATSLSKLADTAREELPSTMAAIRLSGMEI 178

Query: 173 SDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGTLAHQQTISIIQERASLPIISLQP 232
           SDLTLELSDLSQEI DGVNKSAQAVQAAEAGIRQIGTLAHQ TIS+IQERASLPIISLQP
Sbjct: 179 SDLTLELSDLSQEITDGVNKSAQAVQAAEAGIRQIGTLAHQHTISMIQERASLPIISLQP 238

Query: 233 VVAGAAKKTSHAVGQATKTLMNMISRGELSS-ENEDDSEIDRVEI 276
           VVAGAAKKTS AVGQATKT+MN+ISRGE ++ E ED S IDRVEI
Sbjct: 239 VVAGAAKKTSRAVGQATKTIMNIISRGEFNTEEKEDGSRIDRVEI 283

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569012|ref|XP_002525476.1| conserved hypothetical protein [Ricinus communis] gi|223535289|gb|EEF36966.1| conserved hypothetical protein [Ricinus communis]

 Score =  328 bits (840), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 186/286 (65%), Positives = 214/286 (74%), Gaps = 17/286 (5%)

Query: 4   KPNLITANPSHSLTPFLKFESRIPIYFPKPSIS-----HSKFISLTSKKHSFLVPFCCFN 58
           K NLIT N   + T         PI F  P  S     H+  ++  S K S  +P C  N
Sbjct: 2   KLNLITVNSFRTSTSLTLSN---PIQFLSPRASNPLPNHTFSLTPHSSKPSRFLPVCLSN 58

Query: 59  PTKPHNSSELLNRVSENSVP-------EEGELKTDYNVQVAAANVPSFLPPA-KLSLSDQ 110
           PTK  NS+ + + +S +S          E E +   N+Q+    VPSF+ P+ KLSL+DQ
Sbjct: 59  PTKQSNSNAI-DEISSDSRAIDSSGNSNEEEFERSLNMQMGNPVVPSFIQPSNKLSLNDQ 117

Query: 111 AFFLLAFIACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGM 170
           AFFLL+FIACTTS+AFTSLV+AAIP L+AMGRAATSLSKLADTAREELPSTMAAIRLSGM
Sbjct: 118 AFFLLSFIACTTSIAFTSLVIAAIPTLHAMGRAATSLSKLADTAREELPSTMAAIRLSGM 177

Query: 171 EISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGTLAHQQTISIIQERASLPIISL 230
           EISDLTLELSDLS EIADGVNKSAQAVQAAEAGIRQIGTLAHQ T+S+IQERASLPIISL
Sbjct: 178 EISDLTLELSDLSHEIADGVNKSAQAVQAAEAGIRQIGTLAHQHTMSMIQERASLPIISL 237

Query: 231 QPVVAGAAKKTSHAVGQATKTLMNMISRGELSSENEDDSEIDRVEI 276
           QPVVAGAAKKTS AVG+ATK+ +NMISRGE SSENED   I+R++I
Sbjct: 238 QPVVAGAAKKTSRAVGEATKSFINMISRGEDSSENEDTDGIERLDI 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123658|ref|XP_002319134.1| predicted protein [Populus trichocarpa] gi|222857510|gb|EEE95057.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (837), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 192/298 (64%), Positives = 219/298 (73%), Gaps = 31/298 (10%)

Query: 4   KPNLITANPSHSLTPFLKFES-----RIPIYFPKPSISH-SKFISL-----TSKKHSFLV 52
           KPNL+ A+       FL F S     R  I FP+ SI   + F+S+      S + S L+
Sbjct: 2   KPNLLNADS------FLIFNSLSSLTRNSIPFPRNSIPLPNHFLSVISPHPNSSRPSRLI 55

Query: 53  PFCCF-NPTKPHNSS--ELLNRVSENSVPEEGELKTDYNVQVAAANVPSFLPP-AKLSLS 108
           P C   NPT+  ++S  E ++  S   V    EL+ + NVQV    VP+++    KLSLS
Sbjct: 56  PICSSSNPTRKQSTSTNEQVSLNSNVEVLGADELERNLNVQVGNPIVPNYIQSWTKLSLS 115

Query: 109 DQAFFLLAFIACTTSVAFTSLVVAAIPALY----------AMGRAATSLSKLADTAREEL 158
           DQAFFLL+FIACTTS+AFTSLVVAA+P LY          AMG+AATS SKLADTAREEL
Sbjct: 116 DQAFFLLSFIACTTSIAFTSLVVAAVPTLYVSYLTLHLSAAMGKAATSFSKLADTAREEL 175

Query: 159 PSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGTLAHQQTISI 218
           PSTMAAIRLSGMEISDLTLELSDLSQEI DGVNKSAQAVQAAEAGIRQIG LAHQ T+S+
Sbjct: 176 PSTMAAIRLSGMEISDLTLELSDLSQEITDGVNKSAQAVQAAEAGIRQIGALAHQHTMSM 235

Query: 219 IQERASLPIISLQPVVAGAAKKTSHAVGQATKTLMNMISRGELSSENEDDSEIDRVEI 276
           IQERASLPIISLQPVVAGAAKKTS AVGQATKT+MN+ISRGE +SENED S IDRVEI
Sbjct: 236 IQERASLPIISLQPVVAGAAKKTSRAVGQATKTIMNIISRGEFNSENEDASAIDRVEI 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123654|ref|XP_002319133.1| predicted protein [Populus trichocarpa] gi|222857509|gb|EEE95056.1| predicted protein [Populus trichocarpa]

 Score =  299 bits (766), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 157/205 (76%), Positives = 175/205 (85%), Gaps = 3/205 (1%)

Query: 58  NPTKPHNSS--ELLNRVSENSVPEEGELKTDYNVQVAAANVPSFLPP-AKLSLSDQAFFL 114
           NPT+  ++S  E ++  S   V    EL+ + NVQV    VP+++    KLSLSDQAFFL
Sbjct: 5   NPTRKQSTSTNEQVSLNSNVEVLGADELERNLNVQVGNPIVPNYIQSWTKLSLSDQAFFL 64

Query: 115 LAFIACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISD 174
           L+FIACTTS+AFTSLVVAA+P LYAMG+AATS SKLADTAREELPSTMAAIRLSGMEISD
Sbjct: 65  LSFIACTTSIAFTSLVVAAVPTLYAMGKAATSFSKLADTAREELPSTMAAIRLSGMEISD 124

Query: 175 LTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGTLAHQQTISIIQERASLPIISLQPVV 234
           LTLELSDLSQEI DGVNKSAQAVQAAEAGIRQIG LAHQ T+S+IQERASLPIISLQPVV
Sbjct: 125 LTLELSDLSQEITDGVNKSAQAVQAAEAGIRQIGALAHQHTMSMIQERASLPIISLQPVV 184

Query: 235 AGAAKKTSHAVGQATKTLMNMISRG 259
           AGAAKKTS AVGQATKT+MN+ISRG
Sbjct: 185 AGAAKKTSRAVGQATKTIMNIISRG 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462397|ref|XP_002265708.1| PREDICTED: uncharacterized protein LOC100240963 [Vitis vinifera]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 176/275 (64%), Positives = 207/275 (75%), Gaps = 9/275 (3%)

Query: 4   KPNLITANPS-HSLTPFLKFESRIPIYFPKPSISHSKFISLTSKKHSFLVPFCCF-NPTK 61
           KP+L+T   S  S  P     S + ++ P      S F+   S     L    CF + +K
Sbjct: 2   KPSLLTTQSSVQSFLPNPYLHSSLHLHRPS-----SNFLRFISSNPQILPSIRCFSHSSK 56

Query: 62  PHNSSELLNRVSENSVPEEGELKTDYNVQVAAANVP-SFLPPAKLSLSDQAFFLLAFIAC 120
           P +S      ++ N V EE      + V+V +  VP S +PPAKLSL+D+AFFLLAFIAC
Sbjct: 57  PFSSLHHQEPLNPNFVHEEPP-PDQWKVEVQSPLVPASAVPPAKLSLNDRAFFLLAFIAC 115

Query: 121 TTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELS 180
           TTSVAFTSLV+AA+P L+AMGRAATSL+KLADTAREELPSTMAAIRLSGMEISDLTLELS
Sbjct: 116 TTSVAFTSLVIAAVPTLFAMGRAATSLAKLADTAREELPSTMAAIRLSGMEISDLTLELS 175

Query: 181 DLSQEIADGVNKSAQAVQAAEAGIRQIGTLAHQQTISIIQERASLPIISLQPVVAGAAKK 240
           DLSQEIADGV+KS QAVQAAEAGIRQIGTLA QQT S+IQERASLPIISLQPVV GAAKK
Sbjct: 176 DLSQEIADGVSKSTQAVQAAEAGIRQIGTLARQQTASMIQERASLPIISLQPVVTGAAKK 235

Query: 241 TSHAVGQATKTLMNMISRGELSSENEDDSEIDRVE 275
           TS AVGQATKT++NMIS  + SS++EDD E++R+E
Sbjct: 236 TSRAVGQATKTIINMISGKDFSSDDEDDDEVNRLE 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085178|emb|CBI28673.3| unnamed protein product [Vitis vinifera]

 Score =  290 bits (741), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 171/251 (68%), Positives = 197/251 (78%), Gaps = 6/251 (2%)

Query: 30  FPKPSISH---SKFISLTSKKHSFLVPFCCF-NPTKPHNSSELLNRVSENSVPEEGELKT 85
           F  P IS    S F+   S     L    CF + +KP +S      ++ N V EE     
Sbjct: 4   FATPDISFLPSSNFLRFISSNPQILPSIRCFSHSSKPFSSLHHQEPLNPNFVHEEPP-PD 62

Query: 86  DYNVQVAAANVP-SFLPPAKLSLSDQAFFLLAFIACTTSVAFTSLVVAAIPALYAMGRAA 144
            + V+V +  VP S +PPAKLSL+D+AFFLLAFIACTTSVAFTSLV+AA+P L+AMGRAA
Sbjct: 63  QWKVEVQSPLVPASAVPPAKLSLNDRAFFLLAFIACTTSVAFTSLVIAAVPTLFAMGRAA 122

Query: 145 TSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGI 204
           TSL+KLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGV+KS QAVQAAEAGI
Sbjct: 123 TSLAKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVSKSTQAVQAAEAGI 182

Query: 205 RQIGTLAHQQTISIIQERASLPIISLQPVVAGAAKKTSHAVGQATKTLMNMISRGELSSE 264
           RQIGTLA QQT S+IQERASLPIISLQPVV GAAKKTS AVGQATKT++NMIS  + SS+
Sbjct: 183 RQIGTLARQQTASMIQERASLPIISLQPVVTGAAKKTSRAVGQATKTIINMISGKDFSSD 242

Query: 265 NEDDSEIDRVE 275
           +EDD E++R+E
Sbjct: 243 DEDDDEVNRLE 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538658|ref|XP_003537818.1| PREDICTED: uncharacterized protein LOC100809293 [Glycine max]

 Score =  278 bits (712), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 159/266 (59%), Positives = 191/266 (71%), Gaps = 21/266 (7%)

Query: 6   NLITANPSHSLTPFLKFESRIPIYFPKPSISHSKFISLTSKKHSF-LVPFCCFNPTKPHN 64
           N + A+   S +P  +  S + +  P     H  FIS  SK  +F LV +C   P+   +
Sbjct: 4   NSLLASTRASSSPLYQHSSTLTLRQP-----HFLFISSNSKSSAFPLVAYCSSAPSPNES 58

Query: 65  SSELLNRVSENSVPEEGELKTDYNVQVAAANVPSFLPPA-KLSLSDQAFFLLAFIACTTS 123
              +L             L   ++ QV    +P F+ P  KLS SDQAFFLLAFIA TTS
Sbjct: 59  DQTIL-------------LNGTFHSQVTTPKIPPFVSPVPKLSFSDQAFFLLAFIASTTS 105

Query: 124 VAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLS 183
           VAFTSLV AA+P L+AM  AA SLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLS
Sbjct: 106 VAFTSLVFAAVPTLFAMRNAALSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLS 165

Query: 184 QEIADGVNKSAQAVQAAEAGIRQIGTLAHQQTISIIQERASLPIISLQPVVAGAAKKTSH 243
           QEIADGVNKSAQA+QAAEAGIRQIG++A QQT+S+IQERASLP+ISLQP VAGAA+KTS 
Sbjct: 166 QEIADGVNKSAQALQAAEAGIRQIGSVAQQQTVSMIQERASLPVISLQPAVAGAARKTSR 225

Query: 244 AVGQATKTLMNMIS-RGELSSENEDD 268
           AVG+ATK+L+N+IS R + ++E +DD
Sbjct: 226 AVGRATKSLLNIISGRQDATAEYDDD 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517977|gb|AFK47050.1| unknown [Lotus japonicus]

 Score =  276 bits (706), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 150/239 (62%), Positives = 182/239 (76%), Gaps = 14/239 (5%)

Query: 32  KPSISHSKFISLTSKKHSFLVPFCCFNPTKPHNSSELLNRVSENSVPEEGELKTD-YNVQ 90
           +P+  +  F S   K   F+   CC + + P+ S+            EE  L+ D ++ +
Sbjct: 33  QPTFLNFHFFSSKFKPPHFIA--CCSSGSSPNRSNP----------SEESILQNDIFHAE 80

Query: 91  VAAANVPSFLPP-AKLSLSDQAFFLLAFIACTTSVAFTSLVVAAIPALYAMGRAATSLSK 149
           V   NVPSF  P +K S +DQAFFL+ FIACTTSV FTSLV AA+P L+AM  AA SLSK
Sbjct: 81  VTTPNVPSFASPVSKFSFTDQAFFLITFIACTTSVTFTSLVFAAVPTLFAMRNAAISLSK 140

Query: 150 LADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGT 209
           LADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQA+QAAEAGI+QIG+
Sbjct: 141 LADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQALQAAEAGIKQIGS 200

Query: 210 LAHQQTISIIQERASLPIISLQPVVAGAAKKTSHAVGQATKTLMNMISRGELSSENEDD 268
           +A +QT+S+I+ERA+LPIISLQPVV GAA+KTS AVG+ATK+LMN+IS  E +SE +DD
Sbjct: 201 MAQEQTMSMIEERANLPIISLQPVVVGAARKTSRAVGRATKSLMNIISGKEGTSEYDDD 259

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647614|gb|ACU24270.1| unknown [Glycine max]

 Score =  276 bits (705), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 158/266 (59%), Positives = 190/266 (71%), Gaps = 21/266 (7%)

Query: 6   NLITANPSHSLTPFLKFESRIPIYFPKPSISHSKFISLTSKKHSF-LVPFCCFNPTKPHN 64
           N + A+   S +P  +  S + +  P     H  FIS  SK  +F LV +C   P+   +
Sbjct: 4   NSLLASTRASSSPLYQHSSTLTLRQP-----HFLFISSNSKSSAFPLVAYCSSAPSPNES 58

Query: 65  SSELLNRVSENSVPEEGELKTDYNVQVAAANVPSFLPPA-KLSLSDQAFFLLAFIACTTS 123
              +L             L   ++ QV    +P F+ P  KLS SDQAFFLLAFIA TTS
Sbjct: 59  DQTIL-------------LNGTFHSQVTTPKIPPFVSPVPKLSFSDQAFFLLAFIASTTS 105

Query: 124 VAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLS 183
           VAFTSLV AA+P L+AM  AA SLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLS
Sbjct: 106 VAFTSLVFAAVPTLFAMRNAALSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLS 165

Query: 184 QEIADGVNKSAQAVQAAEAGIRQIGTLAHQQTISIIQERASLPIISLQPVVAGAAKKTSH 243
           QEIADGVNKSAQA+QAAEAGIRQIG++A QQT+ +IQERASLP+ISLQP VAGAA+KTS 
Sbjct: 166 QEIADGVNKSAQALQAAEAGIRQIGSVAQQQTVFMIQERASLPVISLQPAVAGAARKTSR 225

Query: 244 AVGQATKTLMNMIS-RGELSSENEDD 268
           AVG+ATK+L+N+IS R + ++E +DD
Sbjct: 226 AVGRATKSLLNIISGRQDATAEYDDD 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680683|ref|NP_172329.2| uncharacterized protein [Arabidopsis thaliana] gi|110738913|dbj|BAF01378.1| hypothetical protein [Arabidopsis thaliana] gi|332190181|gb|AEE28302.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 143/213 (67%), Positives = 172/213 (80%), Gaps = 8/213 (3%)

Query: 60  TKPHNSSELLNR---VSENSVPEEGELK-TDYNVQVAA-ANVPSFLPPAKLSLSDQAFFL 114
           + P +S ELLN    +S  S+   G     +  +QV +  ++ S  P AKLSLSDQAF L
Sbjct: 48  SNPSSSEELLNSNGGMSRASISVFGGTSLNNLKMQVGSPISLHSINPLAKLSLSDQAFLL 107

Query: 115 LAFIACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISD 174
           LAFI CTTSVAFTSLV+ AIP L AMGRAATS +KLADTAR+ELPST+AA+RLSGMEISD
Sbjct: 108 LAFIVCTTSVAFTSLVITAIPTLVAMGRAATSFAKLADTARKELPSTLAAVRLSGMEISD 167

Query: 175 LTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGTLAHQQTISIIQERASLPIISLQPVV 234
           LTLELSDLSQ+I DG+NKSA+AVQAAEAGI+QIGTLA QQT+S+I+ERA+LP ISLQPVV
Sbjct: 168 LTLELSDLSQDITDGINKSAKAVQAAEAGIKQIGTLAQQQTLSMIEERANLPEISLQPVV 227

Query: 235 AGAAKKTSHAVGQATKTLMNMISRGELSSENED 267
           AGAA+KTSHA+G ATK LMN+I+ G   +++ED
Sbjct: 228 AGAAEKTSHAIGSATKRLMNIITGG---NKDED 257

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
TAIR|locus:2025630	257	AT1G08530 "AT1G08530" [Arabido	0.840	0.902	0.608	9.7e-64
TAIR|locus:505006593	257	AT5G09995 "AT5G09995" [Arabido	0.561	0.603	0.420	7.4e-27

TAIR|locus:2025630 AT1G08530 "AT1G08530" [Arabidopsis thaliana (taxid:3702)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 152/250 (60%), Positives = 187/250 (74%)

Query:    33 PSISHSKFISL--TS-KKHSFLVPFCCF--NPTK-----PHNSSELLNR---VSENSVPE 79
             P I    F+ L  TS  + +  +P   +  +PT+     P +S ELLN    +S  S+  
Sbjct:    11 PLIRSPPFLDLSPTSLNRFTLKIPASLYVSHPTRCSISNPSSSEELLNSNGGMSRASISV 70

Query:    80 EGELK-TDYNVQVAAA-NVPSFLPPAKLSLSDQAFFLLAFIACTTSVAFTSLVVAAIPAL 137
              G     +  +QV +  ++ S  P AKLSLSDQAF LLAFI CTTSVAFTSLV+ AIP L
Sbjct:    71 FGGTSLNNLKMQVGSPISLHSINPLAKLSLSDQAFLLLAFIVCTTSVAFTSLVITAIPTL 130

Query:   138 YAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAV 197
              AMGRAATS +KLADTAR+ELPST+AA+RLSGMEISDLTLELSDLSQ+I DG+NKSA+AV
Sbjct:   131 VAMGRAATSFAKLADTARKELPSTLAAVRLSGMEISDLTLELSDLSQDITDGINKSAKAV 190

Query:   198 QAAEAGIRQIGTLAHQQTISIIQERASLPIISLQPVVAGAAKKTSHAVGQATKTLMNMIS 257
             QAAEAGI+QIGTLA QQT+S+I+ERA+LP ISLQPVVAGAA+KTSHA+G ATK LMN+I+
Sbjct:   191 QAAEAGIKQIGTLAQQQTLSMIEERANLPEISLQPVVAGAAEKTSHAIGSATKRLMNIIT 250

Query:   258 RGELSSENED 267
              G   +++ED
Sbjct:   251 GG---NKDED 257

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:505006593 AT5G09995 "AT5G09995" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
 Identities = 69/164 (42%), Positives = 97/164 (59%)

Query:   101 PPAKLS---LSDQAFFLLAFIACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREE 157
             PP +LS    + + F LL  +AC T+++ + L  AAIP L A  +AA SL KL D  REE
Sbjct:    82 PPLQLSQWTFTQKHFVLLNVVACVTAISASWLFFAAIPTLLAFKKAAESLEKLLDVTREE 141

Query:   158 LPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGTLAHQQTIS 217
             LP TMAA+RLSGMEISDLT+ELSDL Q I  GV  S +A++ AE  +R+   L +   ++
Sbjct:   142 LPDTMAAVRLSGMEISDLTMELSDLGQGITQGVKSSTRAIRVAEDRLRR---LTNMNPVA 198

Query:   218 IIQE-RASLPIISLQPVVAGAAKKTSHAV--GQATKTLMNMISR 258
              +QE          +P++A  A+     V  G++   L + I+R
Sbjct:   199 SMQEVMRQTKTDETEPMLAKQARSFREGVVKGRSLWQLFSTITR 242

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
PF06103	90	DUF948: Bacterial protein of unknown function (DUF	98.22
COG4768	139	Uncharacterized protein containing a divergent ver	97.07
PF06103	90	DUF948: Bacterial protein of unknown function (DUF	94.34
PRK10755	356	sensor protein BasS/PmrB; Provisional	83.51
PRK15048	553	methyl-accepting chemotaxis protein II; Provisiona	82.85
PRK09793	533	methyl-accepting protein IV; Provisional	80.96

>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins

Probab=98.22  E-value=2.4e-05  Score=59.33  Aligned_cols=66  Identities=18%  Similarity=0.224  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHhhcchhhhhhHHhhhhh
Q 023819          118 IACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLS  183 (276)
Q Consensus       118 ~~~vvavAltaLl~~AIPtL~AlkRAA~SleKL~Dtv~eELP~TLAAIRLSGlEISDLT~eLsdLs  183 (276)
                      ++++.|+||..|+++++++|..+++..+++++..+.+.+++.+.+..+.-.-.+.+++++|+.+-.
T Consensus         2 a~lI~Aiaf~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~   67 (90)
T PF06103_consen    2 AGLIAAIAFAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKL   67 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788899999999999999999999999999999999999999866666666666666555333

>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]

Probab=97.07  E-value=0.015  Score=50.21  Aligned_cols=117  Identities=21%  Similarity=0.256  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHhhcchhhhhhHHhhhhhHHHH-----
Q 023819          113 FLLAFIACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIA-----  187 (276)
Q Consensus       113 ~lLs~~~~vvavAltaLl~~AIPtL~AlkRAA~SleKL~Dtv~eELP~TLAAIRLSGlEISDLT~eLsdLsQei~-----  187 (276)
                      |++.+++.++|+||.+|++..|-++..+.++-..++|-.+.+.-++-+++.       |=.||+.-.+-|.+|+.     
T Consensus         2 ~ilyIs~~iiAiAf~vL~I~li~tlkkv~~tldevakt~~~l~~qv~gi~~-------eT~~Ll~K~N~L~eDvq~Kv~t   74 (139)
T COG4768           2 IILYISLAIIAIAFLVLVIYLIITLKKVSKTLDEVAKTLKGLTSQVDGITH-------ETEELLHKTNTLAEDVQGKVAT   74 (139)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhHHh
Confidence            567788899999999999999999999999999999999999999988875       44455555555544443     


Q ss_pred             -----HHHHHHHHHHHHHHHhhhhhccchhhhhHHHHHhhhcCCcccchhHHHhHHHHhhh
Q 023819          188 -----DGVNKSAQAVQAAEAGIRQIGTLAHQQTISIIQERASLPIISLQPVVAGAAKKTSH  243 (276)
Q Consensus       188 -----~GVrssa~~V~aaeaglrq~~~~A~~~t~~~lqErA~l~~~s~~PvVa~AA~kt~~  243 (276)
                           +.|+...+.|+..-+..|+.++.+...+.+--.      .+ .+-|+.+.|.+.+.
T Consensus        75 ld~vf~aV~dl~~SV~~ln~s~r~~~~~~t~~~~~~~~------~i-aq~v~~~~A~~~~~  128 (139)
T COG4768          75 LDPVFDAVKDLGQSVSDLNQSVRHLATRATNAVEKNEK------KI-AQAVVSNVASKFFK  128 (139)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHH------HH-HHHHHHHHHHHHHH
Confidence                 334445666666666777777766644422221      12 24555566665554

>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins

Probab=94.34  E-value=1.2  Score=33.78  Aligned_cols=75  Identities=8%  Similarity=0.116  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHHhhcchhhhhhHHhhhhhHHHH
Q 023819          113 FLLAFIACTTSVAFTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQEIA  187 (276)
Q Consensus       113 ~lLs~~~~vvavAltaLl~~AIPtL~AlkRAA~SleKL~Dtv~eELP~TLAAIRLSGlEISDLT~eLsdLsQei~  187 (276)
                      ++.++++.+..+.+.-++.-+-+++.++.+..+.+++=.|-+.+|...+++..+-.--++.+-++.++.+.+.+.
T Consensus         4 lI~Aiaf~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~   78 (90)
T PF06103_consen    4 LIAAIAFAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVA   78 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            445566666777778888888899999999999999999999999999998888877777777777775554443

>PRK10755 sensor protein BasS/PmrB; Provisional

Probab=83.51  E-value=12  Score=32.91  Aligned_cols=67  Identities=15%  Similarity=0.257  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHHH--hhcchhhhhhHHhhhhhHHHHHHHHH
Q 023819          126 FTSLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIR--LSGMEISDLTLELSDLSQEIADGVNK  192 (276)
Q Consensus       126 ltaLl~~AIPtL~AlkRAA~SleKL~Dtv~eELP~TLAAIR--LSGlEISDLT~eLsdLsQei~~GVrs  192 (276)
                      +..++++++-.++..++.-+-+++|.+.+.+.-.+-+....  -...|+.+++..+.++.+++.+..+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~n~~~~~l~~~~~~  136 (356)
T PRK10755         68 LVMVSLTLLICFQAVRWITRPLAELQKELEARTADNLTPIAIHSSTLEIEAVTSALNQLVSRLTSTLDQ  136 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccCCccCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555556777777778788877766553222221111  12246666666666666665554444

>PRK15048 methyl-accepting chemotaxis protein II; Provisional

Probab=82.85  E-value=47  Score=32.08  Aligned_cols=54  Identities=19%  Similarity=0.260  Sum_probs=30.6

Q ss_pred             hhChhhHHHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 023819          156 EELPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQIGT  209 (276)
Q Consensus       156 eELP~TLAAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq~~~  209 (276)
                      +.|-..+..++-+..++++.+.++++-.+++..++...+..++..-+.+.++..
T Consensus       259 ~~l~~~i~~i~~~s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~  312 (553)
T PRK15048        259 RSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTA  312 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445556666666666666666666666666666555555544444444433

>PRK09793 methyl-accepting protein IV; Provisional

Probab=80.96  E-value=57  Score=31.76  Aligned_cols=50  Identities=16%  Similarity=0.250  Sum_probs=25.8

Q ss_pred             ChhhHHHHHhhcchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 023819          158 LPSTMAAIRLSGMEISDLTLELSDLSQEIADGVNKSAQAVQAAEAGIRQI  207 (276)
Q Consensus       158 LP~TLAAIRLSGlEISDLT~eLsdLsQei~~GVrssa~~V~aaeaglrq~  207 (276)
                      |-.++..++-+..+++..+.+++...+++..++...+..++...+.+.++
T Consensus       259 L~~~i~~i~~~~~~~~~~~~eia~~~~~ls~~~e~qa~~~~~~~~s~~~~  308 (533)
T PRK09793        259 LRGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQTAASMEQL  308 (533)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555555555555555444444444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 40/286 (13%), Positives = 78/286 (27%), Gaps = 71/286 (24%)

Query: 18  PFLKFESRIPIYFPKPSISHSKFISLTSKKHSFLVPFCCFNPTKPHNSSELLNRVSENSV 77
            FL   S I     +PS+    +I    + ++    F  +N ++     +L   +     
Sbjct: 92  KFLM--SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL---- 145

Query: 78  PEEGELKTDYNV----------QVAAANVPSFLPPAKLSLSDQAFFLLAFIACTTSVAFT 127
               EL+   NV             A +V       +  +  + F+ L    C +     
Sbjct: 146 ----ELRPAKNVLIDGVLGSGKTWVALDVCLSYKV-QCKMDFKIFW-LNLKNCNS----P 195

Query: 128 SLVVAAIPALYAMGRAATSLSKLADTAREELPSTMAAIRLSGMEISDLTLELSDLSQE-- 185
             V+  +  L              D          + I+L    I  +  EL  L +   
Sbjct: 196 ETVLEMLQKLLY----------QIDPNWTSRSDHSSNIKL---RIHSIQAELRRLLKSKP 242

Query: 186 ------IADGVNKSAQAVQAAEAGIRQIGTLAHQQTISIIQERASLPI--ISLQPVVAGA 237
                 +   V ++A+A  A     +    L   +   +    ++     ISL       
Sbjct: 243 YENCLLVLLNV-QNAKAWNAFNLSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 238 ---------AKKTSHAVG----QATKT---LMNMISRGELSSENED 267
                     K           +   T    +++I   E   +   
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII--AESIRDGLA 342

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00