Citrus Sinensis ID: 023823

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MRGLGRLLQRGLSSHRQRPGFPKQNDAVVYAYSRTLSYLSNPITSQNSTLLKSIPLSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQME
Secondary Structure (PSIPRED)
cccHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccEEccccccccccccHHHHHccccEEEEEEcccEEEEEcccccccccccHHHHHHHHHHHHcccccccccHHHHccccccccccHHHHHHHHHHHHHcccHHHHHccccEEEEEEEccccEEEEEEcccccccccHHHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHccccccccHHcccHHccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccHHccccccEcccccccccccHHHHcccHHHHHHHcccccEEEEEcccEEEEEccccccHHHccHHHHHHHHHHHHccccEEccccccccccccccccHHHHHHHHHHHHHccccccEHcccccEEEEcccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHcHHHcccEEcccHHHHHHHHccccc
Coil and Loop (DISEMBL)
MRGLGRLLQRGlsshrqrpgfpkqndAVVYAYSRTLsylsnpitsqnstllksiplsssvqsgkwNLFRVQRRTMFiqtqptpnpsslmfypgkpvmevgsadfpnaraamnsplakslygvdgitrvffgsdfitvtksedtswdlLKPEIFAAIMDFyssgqplfldsetaaakdtaineddsETVAMIKELLETRirpavqddggdieyrgfdpetgTVKLRmqgacsgcpsssvtLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQME
Flexible Loop (DISEMBL)
mrglgrllqrglsshrqrpgfpkqnDAVVYAYSRTLSYLSNPITSQNSTLLKSIPLSSSVQSGKWNLFRVQRRTMfiqtqptpnpssLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITvtksedtswdLLKPEIFAAIMDFYSSGQPLFLDSETAAAKdtaineddseTVAMIKELLetrirpavqddggdieyrgFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQME
Low Complexity Region (SEG)
MrglgrllqrglsshrqrPGFPKQNDAVVYAYSRTLSYLSNPITSQNSTLLKSIPLSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQME
Disordered region (IsUnstruct)
**************************AVVYAYSRTLSYLSNPIT*****LLKSI*****VQSGKWNLFRVQRRTMFIQ***********FY**********************PLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLD******************VAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGC****VTLKSGIENMLMHYVP***********************
Disordered Region (DISOPRED)
***************************VVYAYSRTLSYLSNPI************************FRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSE***********DDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAED**********
Disordered Region (DISEMBL)
MRGLGRLLQRGLSSHRQRPGFPKQNDAVVYAYSRTLSYLSNPITSQNSTLLKSIPLSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQME
Disordered Region (DISPRO)
****GRLLQRGLSSHRQRPGFPKQNDAVVYAYSRTLSYLSNPI***N*************QSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLD**********INEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVA*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRGLGRLLQRGLSSHRQRPGFPKQNDAVVYAYSRTLSYLSNPITSQNSTLLKSIPLSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQME
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
Q9LIG6	283	NifU-like protein 4, mito	yes	no	0.797	0.777	0.827	1e-108
Q9C8J2	275	NifU-like protein 5, mito	no	no	0.742	0.745	0.805	7e-98
B4JWR9	298	NFU1 iron-sulfur cluster	N/A	no	0.807	0.748	0.540	2e-63
B4NE93	289	NFU1 iron-sulfur cluster	N/A	no	0.818	0.782	0.529	4e-63
Q8SY96	283	NFU1 iron-sulfur cluster	yes	no	0.699	0.681	0.595	4e-63
B4PZ52	283	NFU1 iron-sulfur cluster	N/A	no	0.702	0.685	0.587	9e-63
B3NYF7	283	NFU1 iron-sulfur cluster	N/A	no	0.699	0.681	0.590	9e-63
B4IMF6	283	NFU1 iron-sulfur cluster	N/A	no	0.699	0.681	0.595	1e-62
B4M375	298	NFU1 iron-sulfur cluster	N/A	no	0.717	0.664	0.581	2e-62
B3MRT7	286	NFU1 iron-sulfur cluster	N/A	no	0.699	0.674	0.595	3e-62

>sp|Q9LIG6|NIFU4_ARATH NifU-like protein 4, mitochondrial OS=Arabidopsis thaliana GN=NIFU4 PE=2 SV=1

 Score =  390 bits (1001), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 182/220 (82%), Positives = 199/220 (90%)

Query: 56  LSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPL 115
           L+SS+ + KWN    QRRTMFIQTQ TPNPSSLMFYPGKPVMEVGSADFPN R+A+ SPL
Sbjct: 61  LNSSLLAQKWNFLGGQRRTMFIQTQSTPNPSSLMFYPGKPVMEVGSADFPNVRSALGSPL 120

Query: 116 AKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAA 175
           AKS+Y +DG+ RVFFGSDF+TVTKS+D SWD+LKPEIFAA+MDFYSSGQPLFLDS+ AAA
Sbjct: 121 AKSIYSIDGVVRVFFGSDFVTVTKSDDVSWDILKPEIFAAVMDFYSSGQPLFLDSQAAAA 180

Query: 176 KDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPS 235
           KDTAI+EDDSETVAMIKELLETRIRPAVQDDGGDIEY GFDPE+G VKLRMQGACSGCPS
Sbjct: 181 KDTAISEDDSETVAMIKELLETRIRPAVQDDGGDIEYCGFDPESGIVKLRMQGACSGCPS 240

Query: 236 SSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQM 275
           SSVTLKSGIENMLMHYV EVK VEQE D EDE  TL+G+M
Sbjct: 241 SSVTLKSGIENMLMHYVSEVKGVEQEFDGEDEEGTLSGEM 280

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8J2|NIFU5_ARATH NifU-like protein 5, mitochondrial OS=Arabidopsis thaliana GN=NIFU5 PE=2 SV=1

 Score =  357 bits (915), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 166/206 (80%), Positives = 187/206 (90%), Gaps = 1/206 (0%)

Query: 71  QRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFF 130
           QRRTMFIQTQ TPNPSSLMF PGKPVME+GSADFPN+R+AM+SPLAK+++ +DG+ RVF+
Sbjct: 71  QRRTMFIQTQSTPNPSSLMFSPGKPVMEIGSADFPNSRSAMSSPLAKAIFAIDGVVRVFY 130

Query: 131 GSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAM 190
           GSDF+TVTKS+D +WD+LKP+IFA +MDFYSSGQPLFLDS+  AAKDTAI+EDDSETVAM
Sbjct: 131 GSDFVTVTKSDDVTWDILKPDIFAVVMDFYSSGQPLFLDSQATAAKDTAIHEDDSETVAM 190

Query: 191 IKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMH 250
           IKELLETRIRP+VQDDGGDIEY GFD ETG VKLRMQGACSGCPSSSVTLKSGIENMLMH
Sbjct: 191 IKELLETRIRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLKSGIENMLMH 250

Query: 251 YVPEVKSVEQELDAEDEVATLAGQME 276
           YV EVK VEQE D E+E  T +G ME
Sbjct: 251 YVSEVKGVEQEFDGEEE-GTSSGPME 275

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|B4JWR9|NFU1_DROGR NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila grimshawi GN=GH17809 PE=3 SV=1

 Score =  242 bits (617), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 128/237 (54%), Positives = 164/237 (69%), Gaps = 14/237 (5%)

Query: 34  RTLSYLSNPITSQNSTLLKSIPLSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPG 93
           +T S L+  +T Q   L K  PL +          ++ +R+MFIQTQ TPNP SL F PG
Sbjct: 47  KTYSTLAVDLTKQQMLLRK--PLETLA-------LQITKRSMFIQTQDTPNPDSLKFLPG 97

Query: 94  KPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEI 152
             V+  G+  DFP+A AA  SPLAK L+ V+G+  VFFGSDFIT++K E+  W L+KPE+
Sbjct: 98  VEVLGKGNTYDFPSATAAHCSPLAKLLFRVEGVRAVFFGSDFITISKEENGEWGLIKPEV 157

Query: 153 FAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEY 212
           FA IMDF++SG P+  ++   A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI +
Sbjct: 158 FAVIMDFFASGLPILHEARPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVF 215

Query: 213 RGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVA 269
             +  E G VKL+MQG+CS CPSS VTLK+G++NML  Y+PEV+SVEQ  D  D+VA
Sbjct: 216 ISY--EKGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDEVDKVA 270

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila grimshawi (taxid: 7222)

>sp|B4NE93|NFU1_DROWI NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila willistoni GN=GK25604 PE=3 SV=1

 Score =  241 bits (615), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 126/238 (52%), Positives = 166/238 (69%), Gaps = 12/238 (5%)

Query: 33  SRTLSYLSNPITSQNSTLLKSIPLSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYP 92
           SR   +L++ + +Q+S +  S P + S+      +  + +RTMFIQTQ TPNP SL F P
Sbjct: 33  SRGFVHLTSSV-AQSSAIHVSTPSTPSL------MLIMGKRTMFIQTQDTPNPESLKFLP 85

Query: 93  GKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPE 151
           G  V+  G+  DFP+  AA  SPLAK L+ V+G+  VFFGSDFIT++K E   W L+KPE
Sbjct: 86  GVEVLGKGNTYDFPSVAAAHCSPLAKLLFRVEGVRSVFFGSDFITISKEEAAEWGLIKPE 145

Query: 152 IFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIE 211
           +FA IMDF++SG P+  ++   A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI 
Sbjct: 146 VFAVIMDFFASGLPILHEARNNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIV 203

Query: 212 YRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVA 269
           +  +D   G VKL+MQG+CS CPSS VTLK+G++NML  Y+PEV+SVEQ  D  D++A
Sbjct: 204 FMSYD--NGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDEADKMA 259

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila willistoni (taxid: 7260)

>sp|Q8SY96|NFU1_DROME NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila melanogaster GN=CG32500 PE=2 SV=1

 Score =  241 bits (615), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 118/198 (59%), Positives = 147/198 (74%), Gaps = 5/198 (2%)

Query: 72  RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFF 130
           RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A NSPLAK L+ V+G+  VFF
Sbjct: 64  RRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHNSPLAKLLFRVEGVKGVFF 123

Query: 131 GSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAM 190
           G+DF+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV M
Sbjct: 124 GADFVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPNA--DTEILEDDDETVMM 181

Query: 191 IKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMH 250
           IKELL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  
Sbjct: 182 IKELLDTRIRPTVQEDGGDIVFMGY--EGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239

Query: 251 YVPEVKSVEQELDAEDEV 268
           Y+PEV+SVEQ  D  D +
Sbjct: 240 YIPEVESVEQVFDEADRM 257

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila melanogaster (taxid: 7227)

>sp|B4PZ52|NFU1_DROYA NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila yakuba GN=GE15286 PE=3 SV=1

 Score =  240 bits (612), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 117/199 (58%), Positives = 147/199 (73%), Gaps = 5/199 (2%)

Query: 72  RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFF 130
           RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A +SPLAK L+ V+G+  VFF
Sbjct: 64  RRSMFIQTQDTPNPDSLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFF 123

Query: 131 GSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAM 190
           G+DF+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV M
Sbjct: 124 GADFVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLHDAQPNA--DTEILEDDDETVMM 181

Query: 191 IKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMH 250
           IKELL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  
Sbjct: 182 IKELLDTRIRPTVQEDGGDIVFMGY--EAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239

Query: 251 YVPEVKSVEQELDAEDEVA 269
           Y+PEV+SVEQ  D  D + 
Sbjct: 240 YIPEVESVEQVFDEADRMV 258

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila yakuba (taxid: 7245)

>sp|B3NYF7|NFU1_DROER NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila erecta GN=GG17526 PE=3 SV=1

 Score =  240 bits (612), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 117/198 (59%), Positives = 147/198 (74%), Gaps = 5/198 (2%)

Query: 72  RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFF 130
           RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A +SPLAK L+ V+G+  VFF
Sbjct: 64  RRSMFIQTQDTPNPDSLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFF 123

Query: 131 GSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAM 190
           G+DF+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV M
Sbjct: 124 GADFVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLHDAQPNA--DTEILEDDDETVMM 181

Query: 191 IKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMH 250
           IKELL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  
Sbjct: 182 IKELLDTRIRPTVQEDGGDIVFMGY--EAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239

Query: 251 YVPEVKSVEQELDAEDEV 268
           Y+PEV+SVEQ  D  D +
Sbjct: 240 YIPEVESVEQVFDEADRM 257

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila erecta (taxid: 7220)

>sp|B4IMF6|NFU1_DROSE NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila sechellia GN=GM13534 PE=3 SV=1

 Score =  240 bits (612), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 118/198 (59%), Positives = 147/198 (74%), Gaps = 5/198 (2%)

Query: 72  RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFF 130
           RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A +SPLAK L+ V+G+  VFF
Sbjct: 64  RRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFF 123

Query: 131 GSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAM 190
           G+DFIT++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV M
Sbjct: 124 GADFITISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPNA--DTEILEDDDETVMM 181

Query: 191 IKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMH 250
           IKELL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  
Sbjct: 182 IKELLDTRIRPTVQEDGGDIVFMGY--EAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239

Query: 251 YVPEVKSVEQELDAEDEV 268
           Y+PEV+SVEQ  D  D +
Sbjct: 240 YIPEVESVEQVFDEADRM 257

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila sechellia (taxid: 7238)

>sp|B4M375|NFU1_DROVI NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila virilis GN=GJ19011 PE=3 SV=1

 Score =  238 bits (608), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 118/203 (58%), Positives = 149/203 (73%), Gaps = 5/203 (2%)

Query: 69  RVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITR 127
           ++ RR+MFIQTQ TPNP SL F PG  V+  G+  DFP+  AA  SPLAK L+ V+G+  
Sbjct: 69  QISRRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPSGSAAHCSPLAKLLFRVEGVRA 128

Query: 128 VFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSET 187
           VFFG DFIT++K E   W L+KPE+FA IMDF++SG P+  ++   A  DT I EDD ET
Sbjct: 129 VFFGGDFITISKEESGEWGLIKPEVFAVIMDFFASGLPVIHEARPNA--DTEILEDDDET 186

Query: 188 VAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENM 247
           V MIKELL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NM
Sbjct: 187 VMMIKELLDTRIRPTVQEDGGDIVFMGY--ENGIVKLKMQGSCSSCPSSIVTLKNGVQNM 244

Query: 248 LMHYVPEVKSVEQELDAEDEVAT 270
           L  Y+PEV+SVEQ  D  D++A 
Sbjct: 245 LQFYIPEVESVEQVFDDADKMAN 267

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila virilis (taxid: 7244)

>sp|B3MRT7|NFU1_DROAN NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila ananassae GN=GF20932 PE=3 SV=1

 Score =  238 bits (608), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 118/198 (59%), Positives = 146/198 (73%), Gaps = 5/198 (2%)

Query: 73  RTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFG 131
           R MFIQTQ TPNP SL F PG  V+  G+  DFP+   A  SPLAK L+ V+G+  VFFG
Sbjct: 65  RNMFIQTQDTPNPESLKFLPGVEVLGKGNTHDFPSGTTAHGSPLAKLLFRVEGVRAVFFG 124

Query: 132 SDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMI 191
           +DFIT++K E   W L+KPE+FA IMDF++SG P+  +S   A  DT I EDD ETV MI
Sbjct: 125 ADFITISKEEGAEWSLIKPEVFAVIMDFFASGLPILHESTPNA--DTEILEDDDETVMMI 182

Query: 192 KELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHY 251
           KELL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  Y
Sbjct: 183 KELLDTRIRPTVQEDGGDIVFMGY--ENGIVKLKMQGSCSSCPSSIVTLKNGVQNMLQFY 240

Query: 252 VPEVKSVEQELDAEDEVA 269
           +PEV+SVEQ  DA D++A
Sbjct: 241 IPEVESVEQVFDAVDKMA 258

Molecular scaffold for [Fe-S] cluster assembly of mitochondrial iron-sulfur proteins.

Drosophila ananassae (taxid: 7217)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
225464130	271	PREDICTED: nifU-like protein 4, mitochon	0.967	0.985	0.746	1e-115
255568026	271	HIRA-interacting protein, putative [Rici	0.960	0.977	0.723	1e-110
224110188	279	predicted protein [Populus trichocarpa]	0.996	0.985	0.703	1e-109
18402817	283	NifU-like protein 4 [Arabidopsis thalian	0.797	0.777	0.827	1e-106
209484091	243	iron-sulfer cluster scaffold protein NFU	0.855	0.971	0.791	1e-105
449446277	273	PREDICTED: nifU-like protein 4, mitochon	0.981	0.992	0.708	1e-103
325087305	281	iron-sulfur cluster assembly protein NFU	0.981	0.964	0.713	1e-103
296087967	202	unnamed protein product [Vitis vinifera]	0.731	1.0	0.891	1e-103
356576863	267	PREDICTED: nifU-like protein 4, mitochon	0.869	0.898	0.718	1e-102
357134577	268	PREDICTED: nifU-like protein 4, mitochon	0.865	0.891	0.756	1e-101

>gi|225464130|ref|XP_002264979.1| PREDICTED: nifU-like protein 4, mitochondrial-like [Vitis vinifera]

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/280 (74%), Positives = 233/280 (83%), Gaps = 13/280 (4%)

Query: 1   MRGLGRLLQRGLSSHR----QRPGFPKQNDAVVYAYSRTLSYLSNPITSQNSTLLKSIPL 56
           M+GLGRL+ R L   R    ++P  P++   ++++   T SYL NP +S   T  KS  L
Sbjct: 1   MKGLGRLIGRRLLCKRLEPWRKPLMPRR---LIFSSFTTTSYLENPTSSSRFTSFKSSSL 57

Query: 57  SSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLA 116
                  KW+ F  QRRTMFIQTQ TPNP+SLMFYPGKPVMEVGSADFPN+R+AM+SPLA
Sbjct: 58  P------KWSHFGGQRRTMFIQTQSTPNPASLMFYPGKPVMEVGSADFPNSRSAMSSPLA 111

Query: 117 KSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAK 176
           KSLYG+DGITRVFFGSDFITVTKS+D SWD +KPEIFAAIMDFYSSG+PLFLDS TAAA 
Sbjct: 112 KSLYGIDGITRVFFGSDFITVTKSDDASWDFIKPEIFAAIMDFYSSGKPLFLDSNTAAAM 171

Query: 177 DTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSS 236
           DTAI+EDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETG VKL+MQGACSGCPSS
Sbjct: 172 DTAIHEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGIVKLKMQGACSGCPSS 231

Query: 237 SVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQME 276
           SVTLKSGIENMLMHYVPEVK VEQELDAEDE   L+GQM+
Sbjct: 232 SVTLKSGIENMLMHYVPEVKGVEQELDAEDEDVALSGQMD 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568026|ref|XP_002524990.1| HIRA-interacting protein, putative [Ricinus communis] gi|223535734|gb|EEF37397.1| HIRA-interacting protein, putative [Ricinus communis]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/282 (72%), Positives = 225/282 (79%), Gaps = 17/282 (6%)

Query: 1   MRGLGRLLQRGLSSHRQRPGFPKQNDAVVYAYSRTLSYLSNPITSQNSTLLKSIPLS--- 57
           MRG GRL++R +++                  +R   +LS+   + +S+L +   +S   
Sbjct: 1   MRGFGRLMKRAITT-----------TTACRLSARRAIHLSSANQTMSSSLHRDNHISDFR 49

Query: 58  ---SSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSP 114
              SS+       F  QRRTMFIQTQ TPNPSSLMFYPGKPVMEVGS DFPNARAA+NSP
Sbjct: 50  SLRSSLLPQPRTHFTGQRRTMFIQTQSTPNPSSLMFYPGKPVMEVGSVDFPNARAALNSP 109

Query: 115 LAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAA 174
           LAKSLYG+DG TRVFFGSDFITVTKS+D SWDLLKPEIFAAIMDFYSSGQPLFLDSE AA
Sbjct: 110 LAKSLYGIDGTTRVFFGSDFITVTKSDDVSWDLLKPEIFAAIMDFYSSGQPLFLDSEIAA 169

Query: 175 AKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCP 234
           +KDTAI++DDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETG VKL+MQGACSGCP
Sbjct: 170 SKDTAIHKDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGIVKLKMQGACSGCP 229

Query: 235 SSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQME 276
           SSSVTLKSGIENMLMHYV EVK VEQELDAEDE A LAGQ E
Sbjct: 230 SSSVTLKSGIENMLMHYVSEVKGVEQELDAEDEDAALAGQTE 271

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110188|ref|XP_002315442.1| predicted protein [Populus trichocarpa] gi|222864482|gb|EEF01613.1| predicted protein [Populus trichocarpa]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/280 (70%), Positives = 225/280 (80%), Gaps = 5/280 (1%)

Query: 1   MRGLGRLLQRGLSSHRQRPGFPKQNDAVVYAYSRTLSYLSNPIT----SQNSTLLKSIPL 56
           M+G GRL+ R LS+ +   G  ++ +       R   ++S+  T    S       S  L
Sbjct: 1   MKGFGRLISRALSNQKSF-GLCREINTTCRLTPRRFIHVSSATTAFWHSSGGAFPDSKTL 59

Query: 57  SSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLA 116
           +SS+   K  +   QRRTMFIQTQ TPNPSSLMFYPGKPVM+VGSADFPNAR+AMNSPLA
Sbjct: 60  ASSLHPEKLTVLTGQRRTMFIQTQSTPNPSSLMFYPGKPVMDVGSADFPNARSAMNSPLA 119

Query: 117 KSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAK 176
           K++YG+DGI RVFFG DFIT+TKS+D +W+ LKPEIFAAIMDFYSSG+PLFLDS+TAAAK
Sbjct: 120 KAIYGIDGINRVFFGPDFITITKSDDATWEFLKPEIFAAIMDFYSSGEPLFLDSQTAAAK 179

Query: 177 DTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSS 236
           DTAI+EDDSETVAMIKELLETRIRPAVQDDGGDIEY+GFD ETG VKL+MQGACSGCPSS
Sbjct: 180 DTAISEDDSETVAMIKELLETRIRPAVQDDGGDIEYQGFDEETGIVKLKMQGACSGCPSS 239

Query: 237 SVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQME 276
           SVTLKSGIENMLMHYVPEVK VEQELDAED+ A L  QME
Sbjct: 240 SVTLKSGIENMLMHYVPEVKGVEQELDAEDDEAALTSQME 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402817|ref|NP_566673.1| NifU-like protein 4 [Arabidopsis thaliana] gi|75273382|sp|Q9LIG6.1|NIFU4_ARATH RecName: Full=NifU-like protein 4, mitochondrial; Short=AtNfu-III; Short=AtNfu4; Flags: Precursor gi|13899085|gb|AAK48964.1|AF370537_1 Unknown protein [Arabidopsis thaliana] gi|9294004|dbj|BAB01907.1| unnamed protein product [Arabidopsis thaliana] gi|18377516|gb|AAL66924.1| unknown protein [Arabidopsis thaliana] gi|28207822|emb|CAD55561.1| NFU4 protein [Arabidopsis thaliana] gi|332642927|gb|AEE76448.1| NifU-like protein 4 [Arabidopsis thaliana]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/220 (82%), Positives = 199/220 (90%)

Query: 56  LSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPL 115
           L+SS+ + KWN    QRRTMFIQTQ TPNPSSLMFYPGKPVMEVGSADFPN R+A+ SPL
Sbjct: 61  LNSSLLAQKWNFLGGQRRTMFIQTQSTPNPSSLMFYPGKPVMEVGSADFPNVRSALGSPL 120

Query: 116 AKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAA 175
           AKS+Y +DG+ RVFFGSDF+TVTKS+D SWD+LKPEIFAA+MDFYSSGQPLFLDS+ AAA
Sbjct: 121 AKSIYSIDGVVRVFFGSDFVTVTKSDDVSWDILKPEIFAAVMDFYSSGQPLFLDSQAAAA 180

Query: 176 KDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPS 235
           KDTAI+EDDSETVAMIKELLETRIRPAVQDDGGDIEY GFDPE+G VKLRMQGACSGCPS
Sbjct: 181 KDTAISEDDSETVAMIKELLETRIRPAVQDDGGDIEYCGFDPESGIVKLRMQGACSGCPS 240

Query: 236 SSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQM 275
           SSVTLKSGIENMLMHYV EVK VEQE D EDE  TL+G+M
Sbjct: 241 SSVTLKSGIENMLMHYVSEVKGVEQEFDGEDEEGTLSGEM 280

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209484091|gb|ACI47520.1| iron-sulfer cluster scaffold protein NFU4 [Eucalyptus grandis]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/240 (79%), Positives = 212/240 (88%), Gaps = 4/240 (1%)

Query: 37  SYLSNPITSQNSTLLKSIPLSSS--VQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGK 94
           S  S+P+  + S LL   P +SS  + S KWN F VQRR+MFIQTQ TPNP SLMFYPGK
Sbjct: 2   SAASSPL--RRSALLLPGPAASSPPLFSQKWNPFAVQRRSMFIQTQSTPNPMSLMFYPGK 59

Query: 95  PVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFA 154
           PVMEVGSADFPNAR +MNS LA++L+G+DG+TRVF+GSDF+TVTKS+D SWDLLKPEIFA
Sbjct: 60  PVMEVGSADFPNARTSMNSALARALFGIDGVTRVFYGSDFVTVTKSDDASWDLLKPEIFA 119

Query: 155 AIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRG 214
           AIMDFYSSGQPLFLDS+TA+A DTAI+EDDSETVAMIKELLETRIRPAVQDDGGDIEYRG
Sbjct: 120 AIMDFYSSGQPLFLDSQTASAMDTAIHEDDSETVAMIKELLETRIRPAVQDDGGDIEYRG 179

Query: 215 FDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQ 274
           FD +TG VKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVK+VEQ++DAEDE   L GQ
Sbjct: 180 FDLDTGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKAVEQDMDAEDEEQALTGQ 239

Source: Eucalyptus grandis

Species: Eucalyptus grandis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446277|ref|XP_004140898.1| PREDICTED: nifU-like protein 4, mitochondrial-like [Cucumis sativus] gi|449494166|ref|XP_004159467.1| PREDICTED: nifU-like protein 4, mitochondrial-like [Cucumis sativus]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/278 (70%), Positives = 216/278 (77%), Gaps = 7/278 (2%)

Query: 1   MRGLGRLLQRGLSSHRQRP--GFPKQNDAVVYAYSRTLSYLSNPITSQNSTLLKSIPLSS 58
           M+GLGRL+ R     R+ P  GF    +   ++ + T S       +  S         S
Sbjct: 1   MKGLGRLILRA----RRIPSLGFHGGGNTRFFSAATTSSMFGGEEPASCSISSTIC-SDS 55

Query: 59  SVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKS 118
           S++S K   F  QRRTMFI+TQ TPNPSSLMFYPGKPVMEVGSADFPNAR+AMNSPLAK+
Sbjct: 56  SLRSWKSIQFGGQRRTMFIETQSTPNPSSLMFYPGKPVMEVGSADFPNARSAMNSPLAKA 115

Query: 119 LYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDT 178
           LYGVDG+ RVFFGSDF+TVTKS D SWD LKPEIFAAIMDFYSSGQPLFLDS+TAAA DT
Sbjct: 116 LYGVDGVVRVFFGSDFVTVTKSNDASWDFLKPEIFAAIMDFYSSGQPLFLDSKTAAAMDT 175

Query: 179 AINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSV 238
           AI EDDSETVAMIKELLETRIRPAVQDDGGDIEYRG++ ETG V LRMQGACSGCPSSSV
Sbjct: 176 AIKEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGYNEETGIVTLRMQGACSGCPSSSV 235

Query: 239 TLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQME 276
           TLKSGIENMLMHYVPEVK VEQE D E+E      QME
Sbjct: 236 TLKSGIENMLMHYVPEVKGVEQEFDVEEEDVKSTSQME 273

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|325087305|gb|ADY77002.1| iron-sulfur cluster assembly protein NFU4 [Ipomoea batatas] gi|325087311|gb|ADY77005.1| iron-sulfur cluster assembly protein NFU4 [Ipomoea batatas]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/279 (71%), Positives = 219/279 (78%), Gaps = 8/279 (2%)

Query: 1   MRGLGRLLQ---RGLSSHRQRPGFPKQNDAVVYAYSRTLSYLSN---PITSQNSTLLKSI 54
           M+GLGRL+    R  S+ R    +  +   +  AY R L   S+   P    N T LKS 
Sbjct: 1   MKGLGRLISQAARCRSNSRLVKSYAAEGGGL-RAYCRLLFASSSSQVPSAFSNFTSLKSP 59

Query: 55  PLSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSP 114
            L SS  S  W     QRRTMFIQTQ TPNP SLMFYPGKPVME GSADFPNAR+AMNSP
Sbjct: 60  HLPSSPYSATWATNGGQRRTMFIQTQSTPNPLSLMFYPGKPVMETGSADFPNARSAMNSP 119

Query: 115 LAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAA 174
           LAK+L+G+DGITRVF+GSDF+TVTKS+D SWDLLKPEIFAAIMDF+SSG+PLFLDS TAA
Sbjct: 120 LAKALFGIDGITRVFYGSDFVTVTKSDDASWDLLKPEIFAAIMDFFSSGKPLFLDSNTAA 179

Query: 175 AKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCP 234
           + DTAI EDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFD ++G VKLRMQGACSGCP
Sbjct: 180 SMDTAIQEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDADSGIVKLRMQGACSGCP 239

Query: 235 SSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAG 273
           SSSVTLKSGIENMLMHYVPEVK VEQE   EDE  +L G
Sbjct: 240 SSSVTLKSGIENMLMHYVPEVKGVEQEF-YEDEDPSLTG 277

Source: Ipomoea batatas

Species: Ipomoea batatas

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087967|emb|CBI35250.3| unnamed protein product [Vitis vinifera]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/202 (89%), Positives = 192/202 (95%)

Query: 75  MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 134
           MFIQTQ TPNP+SLMFYPGKPVMEVGSADFPN+R+AM+SPLAKSLYG+DGITRVFFGSDF
Sbjct: 1   MFIQTQSTPNPASLMFYPGKPVMEVGSADFPNSRSAMSSPLAKSLYGIDGITRVFFGSDF 60

Query: 135 ITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKEL 194
           ITVTKS+D SWD +KPEIFAAIMDFYSSG+PLFLDS TAAA DTAI+EDDSETVAMIKEL
Sbjct: 61  ITVTKSDDASWDFIKPEIFAAIMDFYSSGKPLFLDSNTAAAMDTAIHEDDSETVAMIKEL 120

Query: 195 LETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPE 254
           LETRIRPAVQDDGGDIEYRGFDPETG VKL+MQGACSGCPSSSVTLKSGIENMLMHYVPE
Sbjct: 121 LETRIRPAVQDDGGDIEYRGFDPETGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYVPE 180

Query: 255 VKSVEQELDAEDEVATLAGQME 276
           VK VEQELDAEDE   L+GQM+
Sbjct: 181 VKGVEQELDAEDEDVALSGQMD 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576863|ref|XP_003556549.1| PREDICTED: nifU-like protein 4, mitochondrial-like [Glycine max]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/256 (71%), Positives = 211/256 (82%), Gaps = 16/256 (6%)

Query: 32  YSRTLSYLSNPITSQNSTLLKSIPLSSSVQSGKWNLFRV-----------QRRTMFIQTQ 80
           + R L+  SN     N+  L  IPL   + + +   F+            QRR+MFIQTQ
Sbjct: 17  FQRALATQSN-----NNNTLVFIPLPRCLSATRSFHFQRNSPFGFSSGHGQRRSMFIQTQ 71

Query: 81  PTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKS 140
           PTPNPSSLMFYPGKPVMEVGS+DFPN R+AMNSPLAKSL+ +DG+TRVFFGSDF+TVTKS
Sbjct: 72  PTPNPSSLMFYPGKPVMEVGSSDFPNPRSAMNSPLAKSLFAIDGVTRVFFGSDFVTVTKS 131

Query: 141 EDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIR 200
           E+ +W+ LKPE+FAAIMDFYSS QPLFLDS+ AAA DTAI++DDSETVAMIKELLETRIR
Sbjct: 132 EEAAWEFLKPEVFAAIMDFYSSAQPLFLDSQAAAAMDTAIHQDDSETVAMIKELLETRIR 191

Query: 201 PAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQ 260
           PAVQDDGGDIEYRGFD +TG VKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVK VEQ
Sbjct: 192 PAVQDDGGDIEYRGFDLDTGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKGVEQ 251

Query: 261 ELDAEDEVATLAGQME 276
           ELDAED+ A L+G+++
Sbjct: 252 ELDAEDDGAALSGEIK 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357134577|ref|XP_003568893.1| PREDICTED: nifU-like protein 4, mitochondrial-like [Brachypodium distachyon]

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/246 (75%), Positives = 204/246 (82%), Gaps = 7/246 (2%)

Query: 31  AYSRTLSYLSNPITSQNSTLLKSIPLSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMF 90
           A +  L  L++P  ++ S L    P S       W+    QRRTMFIQTQ TPNP SLMF
Sbjct: 30  AAAGALDRLNSPPFARPSALRNPAPPS------PWDRLGGQRRTMFIQTQSTPNPQSLMF 83

Query: 91  YPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKP 150
           +PGKPVMEVGS+DFPN R AM SPLAK+L+ +DG+TRVFFGSDF+TVTKS++TSWD LKP
Sbjct: 84  HPGKPVMEVGSSDFPNVRTAMTSPLAKALFAIDGVTRVFFGSDFVTVTKSDETSWDYLKP 143

Query: 151 EIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDI 210
           EIFAAIMDFYSSGQPLFLDS TAAA DTAI+EDDSE VAMIKELLETRIRPAVQDDGGDI
Sbjct: 144 EIFAAIMDFYSSGQPLFLDSNTAAAMDTAIHEDDSEIVAMIKELLETRIRPAVQDDGGDI 203

Query: 211 EYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVAT 270
           EYRGFDPETG VKL+MQGACSGCPSSSVTLKSGIENMLMHYVPEVK VEQE D  DE A 
Sbjct: 204 EYRGFDPETGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYVPEVKGVEQEFDG-DEEAE 262

Query: 271 LAGQME 276
           LAGQ+E
Sbjct: 263 LAGQVE 268

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
TAIR|locus:2088781	283	NFU4 "NFU domain protein 4" [A	0.880	0.858	0.766	4.1e-97
TAIR|locus:2008311	275	NFU5 "NFU domain protein 5" [A	0.916	0.92	0.679	2e-88
FB|FBgn0052500	283	CG32500 [Drosophila melanogast	0.699	0.681	0.595	5.7e-59
FB|FBgn0052857	283	CG32857 [Drosophila melanogast	0.699	0.681	0.595	5.7e-59
FB|FBgn0053502	283	CG33502 [Drosophila melanogast	0.699	0.681	0.595	5.7e-59
UNIPROTKB|B4IMF6	283	GM13534 "NFU1 iron-sulfur clus	0.699	0.681	0.595	9.3e-59
UNIPROTKB|B4NE93	289	GK25604 "NFU1 iron-sulfur clus	0.818	0.782	0.529	9.3e-59
UNIPROTKB|B3NYF7	283	GG17526 "NFU1 iron-sulfur clus	0.699	0.681	0.590	1.2e-58
UNIPROTKB|B4JWR9	298	GH17809 "NFU1 iron-sulfur clus	0.807	0.748	0.540	1.2e-58
UNIPROTKB|B4PZ52	283	GE15286 "NFU1 iron-sulfur clus	0.699	0.681	0.590	1.2e-58

TAIR|locus:2088781 NFU4 "NFU domain protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
 Identities = 187/244 (76%), Positives = 209/244 (85%)

Query:    33 SRTLSYLSNPITSQNSTLLKSIP-LSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFY 91
             SR   ++S      + T   ++P L+SS+ + KWN    QRRTMFIQTQ TPNPSSLMFY
Sbjct:    37 SRRSLFISATNLLNSRTKDSALPSLNSSLLAQKWNFLGGQRRTMFIQTQSTPNPSSLMFY 96

Query:    92 PGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPE 151
             PGKPVMEVGSADFPN R+A+ SPLAKS+Y +DG+ RVFFGSDF+TVTKS+D SWD+LKPE
Sbjct:    97 PGKPVMEVGSADFPNVRSALGSPLAKSIYSIDGVVRVFFGSDFVTVTKSDDVSWDILKPE 156

Query:   152 IFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIE 211
             IFAA+MDFYSSGQPLFLDS+ AAAKDTAI+EDDSETVAMIKELLETRIRPAVQDDGGDIE
Sbjct:   157 IFAAVMDFYSSGQPLFLDSQAAAAKDTAISEDDSETVAMIKELLETRIRPAVQDDGGDIE 216

Query:   212 YRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATL 271
             Y GFDPE+G VKLRMQGACSGCPSSSVTLKSGIENMLMHYV EVK VEQE D EDE  TL
Sbjct:   217 YCGFDPESGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSEVKGVEQEFDGEDEEGTL 276

Query:   272 AGQM 275
             +G+M
Sbjct:   277 SGEM 280

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;ISS;IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;IGI;ISS

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005198 "structural molecule activity" evidence=TAS

TAIR|locus:2008311 NFU5 "NFU domain protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
 Identities = 174/256 (67%), Positives = 204/256 (79%)

Query:    22 PKQNDAVVYAYSRTLSYLSN-PITSQNSTLLKSIPLSSSVQSGKWNLFRVQRRTMFIQTQ 80
             P  +  ++   S  +S  ++ P+    S    +    S   S  +N    QRRTMFIQTQ
Sbjct:    22 PSSSSLLISRRSLFISAATHFPVNFSESITTNASRNCSRSSSFPFNWIE-QRRTMFIQTQ 80

Query:    81 PTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKS 140
              TPNPSSLMF PGKPVME+GSADFPN+R+AM+SPLAK+++ +DG+ RVF+GSDF+TVTKS
Sbjct:    81 STPNPSSLMFSPGKPVMEIGSADFPNSRSAMSSPLAKAIFAIDGVVRVFYGSDFVTVTKS 140

Query:   141 EDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIR 200
             +D +WD+LKP+IFA +MDFYSSGQPLFLDS+  AAKDTAI+EDDSETVAMIKELLETRIR
Sbjct:   141 DDVTWDILKPDIFAVVMDFYSSGQPLFLDSQATAAKDTAIHEDDSETVAMIKELLETRIR 200

Query:   201 PAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQ 260
             P+VQDDGGDIEY GFD ETG VKLRMQGACSGCPSSSVTLKSGIENMLMHYV EVK VEQ
Sbjct:   201 PSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYVSEVKGVEQ 260

Query:   261 ELDAEDEVATLAGQME 276
             E D E+E  T +G ME
Sbjct:   261 EFDGEEE-GTSSGPME 275

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;ISS;IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;IGI;ISS

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005198 "structural molecule activity" evidence=TAS

GO:0005524 "ATP binding" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

FB|FBgn0052500 CG32500 [Drosophila melanogaster (taxid:7227)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 118/198 (59%), Positives = 147/198 (74%)

Query:    72 RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFF 130
             RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A NSPLAK L+ V+G+  VFF
Sbjct:    64 RRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHNSPLAKLLFRVEGVKGVFF 123

Query:   131 GSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAM 190
             G+DF+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV M
Sbjct:   124 GADFVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPNA--DTEILEDDDETVMM 181

Query:   191 IKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMH 250
             IKELL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  
Sbjct:   182 IKELLDTRIRPTVQEDGGDIVFMGY--EGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239

Query:   251 YVPEVKSVEQELDAEDEV 268
             Y+PEV+SVEQ  D  D +
Sbjct:   240 YIPEVESVEQVFDEADRM 257

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

FB|FBgn0052857 CG32857 [Drosophila melanogaster (taxid:7227)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 118/198 (59%), Positives = 147/198 (74%)

Query:    72 RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFF 130
             RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A NSPLAK L+ V+G+  VFF
Sbjct:    64 RRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHNSPLAKLLFRVEGVKGVFF 123

Query:   131 GSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAM 190
             G+DF+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV M
Sbjct:   124 GADFVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPNA--DTEILEDDDETVMM 181

Query:   191 IKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMH 250
             IKELL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  
Sbjct:   182 IKELLDTRIRPTVQEDGGDIVFMGY--EGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239

Query:   251 YVPEVKSVEQELDAEDEV 268
             Y+PEV+SVEQ  D  D +
Sbjct:   240 YIPEVESVEQVFDEADRM 257

GO:0008026 "ATP-dependent helicase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

FB|FBgn0053502 CG33502 [Drosophila melanogaster (taxid:7227)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 118/198 (59%), Positives = 147/198 (74%)

Query:    72 RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFF 130
             RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A NSPLAK L+ V+G+  VFF
Sbjct:    64 RRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHNSPLAKLLFRVEGVKGVFF 123

Query:   131 GSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAM 190
             G+DF+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV M
Sbjct:   124 GADFVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPNA--DTEILEDDDETVMM 181

Query:   191 IKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMH 250
             IKELL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  
Sbjct:   182 IKELLDTRIRPTVQEDGGDIVFMGY--EGGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239

Query:   251 YVPEVKSVEQELDAEDEV 268
             Y+PEV+SVEQ  D  D +
Sbjct:   240 YIPEVESVEQVFDEADRM 257

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

UNIPROTKB|B4IMF6 GM13534 "NFU1 iron-sulfur cluster scaffold homolog, mitochondrial" [Drosophila sechellia (taxid:7238)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 118/198 (59%), Positives = 147/198 (74%)

Query:    72 RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFF 130
             RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A +SPLAK L+ V+G+  VFF
Sbjct:    64 RRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFF 123

Query:   131 GSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAM 190
             G+DFIT++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV M
Sbjct:   124 GADFITISKQEGAEWSLIKPEVFAVIMDFFASGLPVLNDAQPNA--DTEILEDDDETVMM 181

Query:   191 IKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMH 250
             IKELL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  
Sbjct:   182 IKELLDTRIRPTVQEDGGDIVFMGY--EAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239

Query:   251 YVPEVKSVEQELDAEDEV 268
             Y+PEV+SVEQ  D  D +
Sbjct:   240 YIPEVESVEQVFDEADRM 257

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|B4NE93 GK25604 "NFU1 iron-sulfur cluster scaffold homolog, mitochondrial" [Drosophila willistoni (taxid:7260)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 126/238 (52%), Positives = 166/238 (69%)

Query:    33 SRTLSYLSNPITSQNSTLLKSIPLSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYP 92
             SR   +L++ + +Q+S +  S P + S+      +  + +RTMFIQTQ TPNP SL F P
Sbjct:    33 SRGFVHLTSSV-AQSSAIHVSTPSTPSL------MLIMGKRTMFIQTQDTPNPESLKFLP 85

Query:    93 GKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPE 151
             G  V+  G+  DFP+  AA  SPLAK L+ V+G+  VFFGSDFIT++K E   W L+KPE
Sbjct:    86 GVEVLGKGNTYDFPSVAAAHCSPLAKLLFRVEGVRSVFFGSDFITISKEEAAEWGLIKPE 145

Query:   152 IFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIE 211
             +FA IMDF++SG P+  ++   A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI 
Sbjct:   146 VFAVIMDFFASGLPILHEARNNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIV 203

Query:   212 YRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVA 269
             +  +D   G VKL+MQG+CS CPSS VTLK+G++NML  Y+PEV+SVEQ  D  D++A
Sbjct:   204 FMSYD--NGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDEADKMA 259

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|B3NYF7 GG17526 "NFU1 iron-sulfur cluster scaffold homolog, mitochondrial" [Drosophila erecta (taxid:7220)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 117/198 (59%), Positives = 147/198 (74%)

Query:    72 RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFF 130
             RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A +SPLAK L+ V+G+  VFF
Sbjct:    64 RRSMFIQTQDTPNPDSLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFF 123

Query:   131 GSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAM 190
             G+DF+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV M
Sbjct:   124 GADFVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLHDAQPNA--DTEILEDDDETVMM 181

Query:   191 IKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMH 250
             IKELL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  
Sbjct:   182 IKELLDTRIRPTVQEDGGDIVFMGY--EAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239

Query:   251 YVPEVKSVEQELDAEDEV 268
             Y+PEV+SVEQ  D  D +
Sbjct:   240 YIPEVESVEQVFDEADRM 257

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|B4JWR9 GH17809 "NFU1 iron-sulfur cluster scaffold homolog, mitochondrial" [Drosophila grimshawi (taxid:7222)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 128/237 (54%), Positives = 164/237 (69%)

Query:    34 RTLSYLSNPITSQNSTLLKSIPLSSSVQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPG 93
             +T S L+  +T Q   L K  PL +          ++ +R+MFIQTQ TPNP SL F PG
Sbjct:    47 KTYSTLAVDLTKQQMLLRK--PLETLA-------LQITKRSMFIQTQDTPNPDSLKFLPG 97

Query:    94 KPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEI 152
               V+  G+  DFP+A AA  SPLAK L+ V+G+  VFFGSDFIT++K E+  W L+KPE+
Sbjct:    98 VEVLGKGNTYDFPSATAAHCSPLAKLLFRVEGVRAVFFGSDFITISKEENGEWGLIKPEV 157

Query:   153 FAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEY 212
             FA IMDF++SG P+  ++   A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI +
Sbjct:   158 FAVIMDFFASGLPILHEARPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVF 215

Query:   213 RGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVA 269
               +  E G VKL+MQG+CS CPSS VTLK+G++NML  Y+PEV+SVEQ  D  D+VA
Sbjct:   216 ISY--EKGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEVESVEQVFDEVDKVA 270

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|B4PZ52 GE15286 "NFU1 iron-sulfur cluster scaffold homolog, mitochondrial" [Drosophila yakuba (taxid:7245)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 117/198 (59%), Positives = 147/198 (74%)

Query:    72 RRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFF 130
             RR+MFIQTQ TPNP SL F PG  V+  G+  DFPN   A +SPLAK L+ V+G+  VFF
Sbjct:    64 RRSMFIQTQDTPNPDSLKFLPGVDVLGKGNTYDFPNGTTAHSSPLAKLLFRVEGVKGVFF 123

Query:   131 GSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAM 190
             G+DF+T++K E   W L+KPE+FA IMDF++SG P+  D++  A  DT I EDD ETV M
Sbjct:   124 GADFVTISKQEGAEWSLIKPEVFAVIMDFFASGLPVLHDAQPNA--DTEILEDDDETVMM 181

Query:   191 IKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMH 250
             IKELL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS VTLK+G++NML  
Sbjct:   182 IKELLDTRIRPTVQEDGGDIVFMGY--EAGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQF 239

Query:   251 YVPEVKSVEQELDAEDEV 268
             Y+PEV+SVEQ  D  D +
Sbjct:   240 YIPEVESVEQVFDEADRM 257

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9QZ23	NFU1_MOUSE	No assigned EC number	0.5897	0.6920	0.7490	yes	no
Q9LIG6	NIFU4_ARATH	No assigned EC number	0.8272	0.7971	0.7773	yes	no
Q9UMS0	NFU1_HUMAN	No assigned EC number	0.5398	0.7862	0.8543	yes	no
Q8SY96	NFU1_DROME	No assigned EC number	0.5959	0.6992	0.6819	yes	no
Q9UUB8	YH9J_SCHPO	No assigned EC number	0.4586	0.8442	0.8961	yes	no
B5DKJ8	NFU1_DROPS	No assigned EC number	0.5771	0.7101	0.6853	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	276
pfam08712	87	pfam08712, Nfu_N, Scaffold protein Nfu/NifU N term	9e-47
smart00932	88	smart00932, Nfu_N, Scaffold protein Nfu/NifU N ter	4e-41
COG0694	93	COG0694, COG0694, Thioredoxin-like proteins and do	5e-38
pfam01106	68	pfam01106, NifU, NifU-like domain	4e-26
TIGR02000	290	TIGR02000, NifU_proper, Fe-S cluster assembly prot	2e-07
TIGR03341	190	TIGR03341, YhgI_GntY, IscR-regulated protein YhgI	1e-06
PRK11190	192	PRK11190, PRK11190, Fe/S biogenesis protein NfuA;	0.002

>gnl|CDD|204038 pfam08712, Nfu_N, Scaffold protein Nfu/NifU N terminal

 Score =  151 bits (383), Expect = 9e-47
 Identities = 47/87 (54%), Positives = 62/87 (71%)

Query: 77  IQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFIT 136
           IQT+ TPNP++L F PGK V+  G+ +F NA  A  SPLA++L+ + G+  VFFG DFIT
Sbjct: 1   IQTESTPNPNTLKFLPGKEVLPEGTFEFKNADEAEASPLAQALFKIPGVKSVFFGDDFIT 60

Query: 137 VTKSEDTSWDLLKPEIFAAIMDFYSSG 163
           VTK++D  WD LKPE+  AIM+   SG
Sbjct: 61  VTKADDADWDDLKPEVLEAIMEHLESG 87

This domain is found at the N terminus of NifU and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the the assembly of iron-sulphur clusters. Length = 87

>gnl|CDD|214919 smart00932, Nfu_N, Scaffold protein Nfu/NifU N terminal

 Score =  136 bits (345), Expect = 4e-41
 Identities = 47/88 (53%), Positives = 63/88 (71%), Gaps = 1/88 (1%)

Query: 77  IQTQPTPNPSSLMFYPGKPVMEVGSADFPNAR-AAMNSPLAKSLYGVDGITRVFFGSDFI 135
           IQT+PTPNP++L F PG+ V+  GSA+F +A  AA  SPLA+ L+ + G+  VFFG DFI
Sbjct: 1   IQTEPTPNPNTLKFLPGEFVLPGGSAEFKSADEAAEASPLAQKLFEIPGVKSVFFGPDFI 60

Query: 136 TVTKSEDTSWDLLKPEIFAAIMDFYSSG 163
           TVTK  D  W+ LKPE+ + IM+ + SG
Sbjct: 61  TVTKYPDVDWEDLKPEVLSVIMEHFESG 88

This domain is found at the N terminus of NifU and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the the assembly of iron-sulphur clusters. Length = 88

>gnl|CDD|223766 COG0694, COG0694, Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]

 Score =  128 bits (324), Expect = 5e-38
 Identities = 44/88 (50%), Positives = 58/88 (65%)

Query: 182 EDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLK 241
           E D+E +  ++E+L+ +IRP +  DGGD+E  G D E G V LR+ GACSGCPSS+VTLK
Sbjct: 5   ETDAELLERVEEVLDEKIRPQLAMDGGDVELVGIDEEDGVVYLRLGGACSGCPSSTVTLK 64

Query: 242 SGIENMLMHYVPEVKSVEQELDAEDEVA 269
           +GIE  L   +PEVK VEQ  +      
Sbjct: 65  NGIERQLKEEIPEVKEVEQVTEHARGEH 92

Length = 93

>gnl|CDD|144628 pfam01106, NifU, NifU-like domain

 Score = 96.9 bits (242), Expect = 4e-26
 Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 191 IKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMH 250
           I+E+++  IRP +Q DGGDIE    D     VK+R+QGAC GC SS++TLK GIE  L  
Sbjct: 1   IEEVIDE-IRPMLQRDGGDIELVDVDG--DIVKVRLQGACGGCMSSTMTLKGGIERKLRE 57

Query: 251 YVPEVKSVEQE 261
            + E   V   
Sbjct: 58  RLGESLRVIPV 68

This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown. Length = 68

>gnl|CDD|233679 TIGR02000, NifU_proper, Fe-S cluster assembly protein NifU

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 4/72 (5%)

Query: 188 VAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENM 247
           + +I+++LE  +RP +Q DGGD+E   +D +   V + + GACSGC  S++TLK GI+  
Sbjct: 221 IQLIQKVLEE-VRPVLQADGGDVEL--YDVDGKIVYVVLTGACSGCSMSTMTLK-GIQQR 276

Query: 248 LMHYVPEVKSVE 259
           L   + E   VE
Sbjct: 277 LRERLGEFVVVE 288

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation]. Length = 290

>gnl|CDD|132384 TIGR03341, YhgI_GntY, IscR-regulated protein YhgI

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)

Query: 183 DDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKS 242
           DD+     I  +L++ I P +   GG +       + G   L+  G C+GC    VTLK 
Sbjct: 102 DDAPLEERINYVLQSEINPQLASHGGKVTLVEITDD-GVAVLQFGGGCNGCSMVDVTLKD 160

Query: 243 GIENMLMHYVPEVKSVEQELDAED 266
           G+E  L+   PE+K V    D   
Sbjct: 161 GVEKTLLERFPELKGVRDATDHTR 184

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 190

>gnl|CDD|183027 PRK11190, PRK11190, Fe/S biogenesis protein NfuA; Provisional

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 183 DDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKS 242
           DD+  +  ++ +L+++I P +   GG +       E G   L+  G C+GC    VTLK 
Sbjct: 103 DDAPLMERVEYVLQSQINPQLAGHGGRVSLMEIT-EDGYAILQFGGGCNGCSMVDVTLKE 161

Query: 243 GIENMLMHYVP-EVKSV 258
           GIE  L++  P E+K V
Sbjct: 162 GIEKQLLNEFPGELKGV 178

Length = 192

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
KOG2358	213	consensus NifU-like domain-containing proteins [Po	100.0
PF08712	87	Nfu_N: Scaffold protein Nfu/NifU N terminal; Inter	99.97
COG0694	93	Thioredoxin-like proteins and domains [Posttransla	99.94
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	99.9
PF01106	68	NifU: NifU-like domain; InterPro: IPR001075 Iron-s	99.89
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	99.89
TIGR02000	290	NifU_proper Fe-S cluster assembly protein NifU. Th	99.79
KOG2358	213	consensus NifU-like domain-containing proteins [Po	97.86
PF01883	72	DUF59: Domain of unknown function DUF59; InterPro:	96.52
COG2151	111	PaaD Predicted metal-sulfur cluster biosynthetic e	94.3
TIGR02945	99	SUF_assoc FeS assembly SUF system protein. Members	93.58
TIGR03406	174	FeS_long_SufT probable FeS assembly SUF system pro	89.27

>KOG2358 consensus NifU-like domain-containing proteins [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-46  Score=331.73  Aligned_cols=203  Identities=51%  Similarity=0.767  Sum_probs=187.3

Q ss_pred             cceeEEEEeeCCCCCCceeEeCCcccC-CCcceecCChhhhcCcHHHhcccCCC-CeeEEEEeCCeEEEEecCC-CChhh
Q 023823           71 QRRTMFIQTQPTPNPSSLMFYPGKPVM-EVGSADFPNARAAMNSPLAKSLYGVD-GITRVFFGSDFITVTKSED-TSWDL  147 (276)
Q Consensus        71 ~~R~m~I~~E~TPNPn~LKF~p~~~l~-~~gs~~F~~~~~A~~sPLA~~LF~i~-gV~sVfi~~dFITVtK~~~-~dW~~  147 (276)
                      ++| |+||++.||||+++||+|+.+++ ..+..+|.+...+..+|||+++|.++ ||++||+++|||||+|..+ ..|..
T Consensus         7 a~r-~~i~t~~tPn~~Sl~f~p~~~i~~~~~~~~~~~~~s~~~s~La~s~~~~~~gvv~~~~g~dfvtv~k~~ee~~w~~   85 (213)
T KOG2358|consen    7 AAR-MFIQTQITPNPSSLLFLPGKQILSERGLGDFATPCSAFFSPLAKSILFRDGGVVKVFFGPDFVTVTKLTEENVWSV   85 (213)
T ss_pred             hhh-hcccccCCCCcccccccCCCcccccccccccccccchhhcHHHHHHHhhcCCcEEEEecCCeEEEeccchhhhHhh
Confidence            677 99999999999999999999998 67888999988889999999999887 8999999999999999888 89999


Q ss_pred             hHHHHHHHHHHHHhcCCCCcccchhhhhccccCCCCchHHHHHHHHHHHhcCCcchhcCCCcEEEEEEecCCCEEEEEec
Q 023823          148 LKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQ  227 (276)
Q Consensus       148 Lkp~I~~~I~DflsSG~PVv~e~~~~~~~~~~~~~~~~el~~~I~~vL~~~IrP~l~~dGGdIelv~~d~~~g~V~Vrl~  227 (276)
                      |+|+|...++|+++.|+|++.+.......+. +.+++.++...|+++|+++|||.|+.||||++|+++|.+.|+|+++|+
T Consensus        86 L~p~i~~~~sd~g~~g~pli~g~~~~~~~~~-~~e~d~e~t~~ikelietRiRp~i~edggdi~y~g~e~g~g~v~lklq  164 (213)
T KOG2358|consen   86 LDPEIPSLMSDGGNVGLPLIDGNIVVLKLQG-ACESDPESTMTIKELIETRIRPKIQEDGGDEDYVGFETGLGLVSLKLQ  164 (213)
T ss_pred             hchhhHHHHhccccccchhhccchhhhhhcc-cccCChhHHHHHHHHHHHhhhhhhhccCCceeeccccCccchHHHHHh
Confidence            9999999999999999999988755333332 456788999999999999999999999999999999976789999999


Q ss_pred             cCCCCCcchHHHHHHHHHHHHHHhCCCcceEeecCCcchHHHhhccCC
Q 023823          228 GACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEVATLAGQM  275 (276)
Q Consensus       228 GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~~~~~~~~~~~~~~  275 (276)
                      |+|.+||++.+||++|||+||++|+|+||.|+++.|+|+++.+++..+
T Consensus       165 gact~cpss~vtlk~Gie~mL~~y~~eVK~v~qv~d~e~~~v~~e~~~  212 (213)
T KOG2358|consen  165 GACTECPSSLVTLKNGIENMLEIYVPEVKGVIQVPDAEVMTVTVELTK  212 (213)
T ss_pred             hhhccCCcccchhhhhHHHHHHhhcceeeEEEeccCccceEEeeeccc
Confidence            999999999999999999999999999999999999999988877654

>PF08712 Nfu_N: Scaffold protein Nfu/NifU N terminal; InterPro: IPR014824 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron

Probab=99.97  E-value=5.1e-31  Score=206.19  Aligned_cols=87  Identities=49%  Similarity=0.877  Sum_probs=71.2

Q ss_pred             EEeeCCCCCCceeEeCCcccCCCcceecCChhhhcCcHHHhcccCCCCeeEEEEeCCeEEEEecCCCChhhhHHHHHHHH
Q 023823           77 IQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAI  156 (276)
Q Consensus        77 I~~E~TPNPn~LKF~p~~~l~~~gs~~F~~~~~A~~sPLA~~LF~i~gV~sVfi~~dFITVtK~~~~dW~~Lkp~I~~~I  156 (276)
                      ||+|+|||||+|||+++++++++|+++|++.++|..+|||++||+|+||++||+++|||||+|.++++|++|+++|+++|
T Consensus         1 I~~e~TPNPn~lKF~~~~~~~~~~s~~f~~~~~a~~spLA~~Lf~i~gV~~Vf~~~dfItVtK~~~~~W~~l~~~I~~~I   80 (87)
T PF08712_consen    1 IQIEPTPNPNALKFVLDEPLLPGGSFEFKSAEEASDSPLAQALFAIPGVKSVFIGDDFITVTKNPDADWEDLKPEIREVI   80 (87)
T ss_dssp             EEEEE-SSSSEEEEEESS-SSTS---EEESSS-TTS-HHHHHHHTSTTEEEEEEETTEEEEEE-TTS-HHHHHHHHHHHT
T ss_pred             CEeecCCCcccEEEECCceeecCccEEeCChHHcccCHHHHHhcCCCCEeEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcC
Q 023823          157 MDFYSSG  163 (276)
Q Consensus       157 ~DflsSG  163 (276)
                      ++||++|
T Consensus        81 ~~~l~sG   87 (87)
T PF08712_consen   81 MEFLESG   87 (87)
T ss_dssp             H------
T ss_pred             hhhccCC
Confidence            9999887

These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This domain is found at the N terminus of NifU (from NIF system) and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the assembly of iron-sulphur clusters, functioning as scaffolds [, ]. ; GO: 0005506 iron ion binding; PDB: 2FFM_A 1PQX_A 2K1H_A.

>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.4e-27  Score=187.52  Aligned_cols=86  Identities=50%  Similarity=0.820  Sum_probs=81.2

Q ss_pred             CchHHHHHHHHHHHhcCCcchhcCCCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeecC
Q 023823          183 DDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQEL  262 (276)
Q Consensus       183 ~~~el~~~I~~vL~~~IrP~l~~dGGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~  262 (276)
                      .++++.++|+++|+++|||+|++|||||+|++|++.+|+|+|||+|||+|||||++|||++||++|++++|+|++|++++
T Consensus         6 ~~~~~~e~v~~~l~~~irP~l~~dGGdve~~~i~~~~g~V~l~l~GaC~gC~sS~~TLk~gIE~~L~~~i~ev~~V~~v~   85 (93)
T COG0694           6 TDAELLERVEEVLDEKIRPQLAMDGGDVELVGIDEEDGVVYLRLGGACSGCPSSTVTLKNGIERQLKEEIPEVKEVEQVT   85 (93)
T ss_pred             ccHHHHHHHHHHHHhccCcceeccCCeEEEEEEecCCCeEEEEeCCcCCCCcccHHHHHHHHHHHHHHhCCccceEEEcc
Confidence            46789999999999999999999999999999998789999999999999999999999999999999999999999999


Q ss_pred             CcchHH
Q 023823          263 DAEDEV  268 (276)
Q Consensus       263 ~~~~~~  268 (276)
                      ++.+++
T Consensus        86 ~~~~~~   91 (93)
T COG0694          86 EHARGE   91 (93)
T ss_pred             Cccccc
Confidence            876543

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=99.90  E-value=1e-23  Score=186.29  Aligned_cols=82  Identities=32%  Similarity=0.605  Sum_probs=77.4

Q ss_pred             CchHHHHHHHHHHHhcCCcchhcCCCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeecC
Q 023823          183 DDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQEL  262 (276)
Q Consensus       183 ~~~el~~~I~~vL~~~IrP~l~~dGGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~  262 (276)
                      +++++.++|+++|+++|||+|++|||||+|+++++ +++|+|||+|+|+|||+|.+||+++||++|++++|||++|+.++
T Consensus       102 ~~~~~~~~i~~~l~~~irP~l~~dGGdielv~v~~-~~~v~v~l~GaC~gC~~s~~Tl~~~ie~~l~~~~p~v~~V~~~~  180 (190)
T TIGR03341       102 DDAPLEERINYVLQSEINPQLASHGGKVTLVEITD-DGVAVLQFGGGCNGCSMVDVTLKDGVEKTLLERFPELKGVRDAT  180 (190)
T ss_pred             cchHHHHHHHHHHHhccCHHHHhcCCceEEEEEcC-CCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCcceEEEec
Confidence            46679999999999999999999999999999984 57999999999999999999999999999999999999999998


Q ss_pred             Ccc
Q 023823          263 DAE  265 (276)
Q Consensus       263 ~~~  265 (276)
                      |+.
T Consensus       181 ~~~  183 (190)
T TIGR03341       181 DHT  183 (190)
T ss_pred             Ccc
Confidence            875

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron

Probab=99.89  E-value=1.4e-23  Score=157.23  Aligned_cols=68  Identities=56%  Similarity=0.909  Sum_probs=63.7

Q ss_pred             HHHHHHhcCCcchhcCCCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeec
Q 023823          191 IKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE  261 (276)
Q Consensus       191 I~~vL~~~IrP~l~~dGGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~  261 (276)
                      |+++|++ |||+|++|||||+|++++  +++|+|+|+|+|+|||++.+||+++||++|++++|+++.|+.+
T Consensus         1 V~~~l~~-IrP~L~~dGGdv~lv~v~--~~~V~V~l~GaC~gC~~s~~Tl~~~Ie~~L~~~~~~v~~V~~v   68 (68)
T PF01106_consen    1 VEEVLEE-IRPYLQSDGGDVELVDVD--DGVVYVRLTGACSGCPSSDMTLKQGIEQALREAVPEVKRVVPV   68 (68)
T ss_dssp             HHHHHHH-CHHHHHHTTEEEEEEEEE--TTEEEEEEESSCCSSCCHHHHHHHHHHHHHHHHSTT-SEEEEC
T ss_pred             CHHHHHH-hChHHHhcCCcEEEEEec--CCEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCCceEEEC
Confidence            6889997 999999999999999999  5699999999999999999999999999999999999999864

These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=99.89  E-value=1.7e-23  Score=185.18  Aligned_cols=83  Identities=30%  Similarity=0.590  Sum_probs=77.9

Q ss_pred             CchHHHHHHHHHHHhcCCcchhcCCCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCC-CcceEeec
Q 023823          183 DDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVP-EVKSVEQE  261 (276)
Q Consensus       183 ~~~el~~~I~~vL~~~IrP~l~~dGGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vP-eV~~V~~~  261 (276)
                      +++++.++|+++|+++|||+|++|||||+|+++++ +|+|+|||+|||+|||+|.+||+++||++|++++| +|++|+++
T Consensus       103 ~~~~~~~~i~~~l~~~irP~l~~dGGdielv~v~~-~~~v~v~l~GaC~gC~~s~~Tl~~~Ie~~l~~~~p~~i~~v~~v  181 (192)
T PRK11190        103 DDAPLMERVEYVLQSQINPQLAGHGGRVSLMEITE-DGYAILQFGGGCNGCSMVDVTLKEGIEKQLLNEFPGELKGVRDL  181 (192)
T ss_pred             ccHHHHHHHHHHHHhccChhHHhcCCcEEEEEEcC-CCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCHhhceEEEe
Confidence            46679999999999999999999999999999984 58999999999999999999999999999999999 99999999


Q ss_pred             CCcch
Q 023823          262 LDAED  266 (276)
Q Consensus       262 ~~~~~  266 (276)
                      +++..
T Consensus       182 ~~~~~  186 (192)
T PRK11190        182 TEHQR  186 (192)
T ss_pred             ccccc
Confidence            88764

>TIGR02000 NifU_proper Fe-S cluster assembly protein NifU

Probab=99.79  E-value=7.1e-19  Score=164.46  Aligned_cols=73  Identities=37%  Similarity=0.636  Sum_probs=68.2

Q ss_pred             hHHHHHHHHHHHhcCCcchhcCCCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeec
Q 023823          185 SETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE  261 (276)
Q Consensus       185 ~el~~~I~~vL~~~IrP~l~~dGGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~  261 (276)
                      .+..++|+++| ++|||+|++|||||+|++|+  +|+|+|||+|+|+|||++.+||++ ||++|++++|++..|+.+
T Consensus       218 ~~~~~~v~~~l-~~irP~l~~dGGdv~lv~v~--~~~v~v~l~GaC~gC~~s~~Tl~~-Ie~~l~~~~p~~~~V~~v  290 (290)
T TIGR02000       218 VQRIQLIQKVL-EEVRPVLQADGGDVELYDVD--GKIVYVVLTGACSGCSMSTMTLKG-IQQRLRERLGEFVVVEAV  290 (290)
T ss_pred             HHHHHHHHHHH-HHhCchHhhcCCcEEEEEEe--CCEEEEEEeeCCCCCcchHHHHHH-HHHHHHHhCCCceEEEeC
Confidence            45678999999 58999999999999999998  689999999999999999999998 999999999999999864

Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens.

>KOG2358 consensus NifU-like domain-containing proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=5e-06  Score=74.52  Aligned_cols=76  Identities=28%  Similarity=0.393  Sum_probs=68.7

Q ss_pred             HHHHHHHHhcCCcchhcCCCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeecCCcchH
Q 023823          189 AMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDE  267 (276)
Q Consensus       189 ~~I~~vL~~~IrP~l~~dGGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~~~~~~  267 (276)
                      +....+|+ .++|++-+|||+.-+--++  +..+.+.++|+|..||.+++++|.+||..||..+||.-.+++..+.|+.
T Consensus        80 e~~w~~L~-p~i~~~~sd~g~~g~pli~--g~~~~~~~~~~~e~d~e~t~~ikelietRiRp~i~edggdi~y~g~e~g  155 (213)
T KOG2358|consen   80 ENVWSVLD-PEIPSLMSDGGNVGLPLID--GNIVVLKLQGACESDPESTMTIKELIETRIRPKIQEDGGDEDYVGFETG  155 (213)
T ss_pred             hhhHhhhc-hhhHHHHhccccccchhhc--cchhhhhhcccccCChhHHHHHHHHHHHhhhhhhhccCCceeeccccCc
Confidence            46677887 6999999999999998887  5688999999999999999999999999999999999999998877774

>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function

Probab=96.52  E-value=0.02  Score=42.35  Aligned_cols=67  Identities=24%  Similarity=0.431  Sum_probs=52.6

Q ss_pred             HHHHHHHHhcCCcchhcC---CCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEe
Q 023823          189 AMIKELLETRIRPAVQDD---GGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVE  259 (276)
Q Consensus       189 ~~I~~vL~~~IrP~l~~d---GGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~  259 (276)
                      +.|.++|.+-.-|.+..+   =|-|.=+.++  +|.|+|.|.-.+.+|| ....|++.|++.|+ .+|+|++|.
T Consensus         2 ~~V~~aL~~v~dP~~~~~iv~~g~V~~i~i~--~~~V~v~l~l~~~~~~-~~~~l~~~i~~~l~-~l~gv~~V~   71 (72)
T PF01883_consen    2 QAVRDALKQVKDPELGKDIVELGMVRDISIE--GGKVSVSLELPTPACP-AAEPLREEIREALK-ALPGVKSVK   71 (72)
T ss_dssp             HHHHHHHTT-BETTTSSBTTTTTSEEEEEEC--TCEEEEEE--SSTTHT-THHHHHHHHHHHHH-TSTT-SEEE
T ss_pred             HHHHHHHhCCCCCCCCCCHHHcCCeeEEEEE--CCEEEEEEEECCCCch-HHHHHHHHHHHHHH-hCCCCceEe
Confidence            578888888888888665   3667777776  7999999999999999 55579999999999 899999886

The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.

>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]

Probab=94.30  E-value=0.36  Score=39.77  Aligned_cols=76  Identities=34%  Similarity=0.460  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHHhcCCcchhcCC---CcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeec
Q 023823          185 SETVAMIKELLETRIRPAVQDDG---GDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE  261 (276)
Q Consensus       185 ~el~~~I~~vL~~~IrP~l~~dG---GdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~  261 (276)
                      .++.++|.+.|..-+-|.|--|=   |=|.=+.++.++|.++|.|...-.|||++.. +.+-++++|++ +|.|+.|+..
T Consensus        11 ~~~~~~i~~aL~~V~DPEi~idIvdLGLVy~v~i~~~~~~v~v~mtlT~~gCP~~~~-i~~~v~~al~~-~~~v~~v~V~   88 (111)
T COG2151          11 KVTLEDILEALKTVIDPEIGIDIVDLGLVYEVDIDDVDGLVKVKMTLTSPGCPLAEV-IADQVEAALEE-IPGVEDVEVE   88 (111)
T ss_pred             hhhHHHHHHHhhcCCCcccceeeEeeccEEEEEEecCCceEEEEEecCCCCCCccHH-HHHHHHHHHHh-cCCcceEEEE
Confidence            45678888889888999995542   2223333443256899999999999999996 66789999887 6668877765


Q ss_pred             C
Q 023823          262 L  262 (276)
Q Consensus       262 ~  262 (276)
                      +
T Consensus        89 l   89 (111)
T COG2151          89 L   89 (111)
T ss_pred             E
Confidence            3

>TIGR02945 SUF_assoc FeS assembly SUF system protein

Probab=93.58  E-value=0.4  Score=37.52  Aligned_cols=73  Identities=25%  Similarity=0.368  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhcCCcchhcCCCcEEEE-EEecCC-CEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeec
Q 023823          187 TVAMIKELLETRIRPAVQDDGGDIEYR-GFDPET-GTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE  261 (276)
Q Consensus       187 l~~~I~~vL~~~IrP~l~~dGGdIelv-~~d~~~-g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~  261 (276)
                      +.+.|.++|..-.-|.+..+-.+..++ ++..++ |.|+|.+.-...+||.... |++.|+..|.. +|++..|...
T Consensus         2 ~~~~I~~~L~~v~dP~l~~~lv~~g~V~~i~v~~~~~v~i~l~l~~p~~~~~~~-l~~~i~~al~~-l~gv~~v~v~   76 (99)
T TIGR02945         2 LKDAVIEALKTVYDPEIPVNIYELGLIYDIDVDDDGHVDIQMTLTAPNCPVAGS-MPGEVENAVRA-VPGVGSVTVE   76 (99)
T ss_pred             HHHHHHHHHcCCCCCCCCCCeecCCCeeEEEECCCCeEEEEEEECCCCCChHHH-HHHHHHHHHHh-CCCCceEEEE
Confidence            357788999888888887653333333 233334 7899999888888887664 88889999965 7888877654

Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.

>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT

Probab=89.27  E-value=2.3  Score=37.45  Aligned_cols=75  Identities=23%  Similarity=0.296  Sum_probs=56.9

Q ss_pred             hHHHHHHHHHHHhcCCcchhcC---CCcEEEEEEec---CCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceE
Q 023823          185 SETVAMIKELLETRIRPAVQDD---GGDIEYRGFDP---ETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSV  258 (276)
Q Consensus       185 ~el~~~I~~vL~~~IrP~l~~d---GGdIelv~~d~---~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V  258 (276)
                      +...++|.++|.+-.-|.+..+   =|-|.=+.++.   +++.|+|.|.-...+|++.. .|++.|+.+|.. +|.|++|
T Consensus        72 ~~~ee~V~eaL~tV~DPei~~nIVeLGlV~~I~Id~~~~~~~~V~I~mtLt~p~c~~~~-~L~~dV~~aL~~-l~gV~~V  149 (174)
T TIGR03406        72 EDNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPGCGMGP-VLVEDVEDKVLA-VPNVDEV  149 (174)
T ss_pred             cccHHHHHHHHcCCCCCCCCCChHHcCCeEEEEEecccCCCCEEEEEEEeCCCCCcHHH-HHHHHHHHHHHh-CCCceeE
Confidence            3446889999998889988765   35565556664   12389999999999999877 478889999974 7888877


Q ss_pred             eec
Q 023823          259 EQE  261 (276)
Q Consensus       259 ~~~  261 (276)
                      ...
T Consensus       150 ~V~  152 (174)
T TIGR03406       150 EVE  152 (174)
T ss_pred             EEE
Confidence            654

The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	276
2ltm_A	107	Solution Nmr Structure Of Nfu1 Iron-Sulfur Cluster		4e-27
1veh_A	92	Solution Structure Of Rsgi Ruh-018, A Nifu-Like Dom		1e-24
1xhj_A	88	Solution Structure Of The Staphylococcus Epidermidi		5e-11
2z51_A	154	Crystal Structure Of Arabidopsis Cnfu Involved In I		2e-10
2jnv_A	91	Solution Structure Of C-Terminal Domain Of Nifu-Lik		6e-10
2ltl_A	119	Solution Nmr Structure Of Nifu-Like Protein From Sa		7e-04

>pdb|2LTM|A Chain A, Solution Nmr Structure Of Nfu1 Iron-Sulfur Cluster Scaffold Homolog From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr2876b Length = 107

Iteration: 1
 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 71/93 (76%), Gaps = 1/93 (1%)
Query: 75  MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 134
           MFIQTQ TPNP+SL F PGKPV+E  + DFP   AA  SPLA+ L+ ++G+  VFFG D 
Sbjct: 11  MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDS 70
Query: 135 ITVTK-SEDTSWDLLKPEIFAAIMDFYSSGQPL 166
           ITVTK +E+  W+LLKP+I+A IMDF++SG PL
Sbjct: 71  ITVTKENEELDWNLLKPDIYATIMDFFASGLPL 103

>pdb|1VEH|A Chain A, Solution Structure Of Rsgi Ruh-018, A Nifu-Like Domain Of Hirip5 Protein From Mouse Cdna Length = 92

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 62/74 (83%), Gaps = 2/74 (2%)
Query: 187 TVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIEN 246
            VAMIKELL+TRIRP VQ+DGGD+ YRGF  E G V+L++QG+C+ CPSS +TLKSGI+N
Sbjct: 14  VVAMIKELLDTRIRPTVQEDGGDVIYRGF--EDGIVRLKLQGSCTSCPSSIITLKSGIQN 71
Query: 247 MLMHYVPEVKSVEQ 260
           ML  Y+PEV+ VEQ
Sbjct: 72  MLQFYIPEVEGVEQ 85

>pdb|1XHJ|A Chain A, Solution Structure Of The Staphylococcus Epidermidis Protein Se0630. Northest Structural Genomics Consortium Target Ser8 Length = 88

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 191 IKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMH 250
           + E++E R+RP +  DGGD      D E G VKL++ GAC  CPSS++TLK+GIE  L  
Sbjct: 12  VAEVIE-RLRPFLLRDGGDCTL--VDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHE 68
Query: 251 YVPEVKSVEQ 260
            VP V  VEQ
Sbjct: 69  EVPGVIEVEQ 78

>pdb|2Z51|A Chain A, Crystal Structure Of Arabidopsis Cnfu Involved In Iron- Sulfur Cluster Biosynthesis Length = 154

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 199 IRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSV 258
           IRP +  DGG++     D     V++++QGAC  CPSS++T+K GIE  LM  +PE+ +V
Sbjct: 16  IRPYLMSDGGNVALHEID--GNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAV 73
Query: 259 EQELDAE 265
           E   D E
Sbjct: 74  EALPDEE 80

>pdb|2JNV|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like Protein From Oryza Sativa Length = 91

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 187 TVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIEN 246
           T   ++ +L+ ++RP +  DGGD+     +     V+L++QGAC  CPSS +T+K GIE 
Sbjct: 6   TAGNVESVLD-QVRPYLTADGGDVALH--EIAGNVVRLKLQGACGSCPSSLITIKRGIER 62
Query: 247 MLMHYVPEVKSVEQELDAE 265
            LM  +P+V +VE   D E
Sbjct: 63  RLMEKIPDVAAVEPVTDKE 81

>pdb|2LTL|A Chain A, Solution Nmr Structure Of Nifu-Like Protein From Saccharomyces Cerevisiae, Northeast Structural Genomics Consortium (Nesg) Target Yr313a Length = 119

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 72  RRTMFIQTQPTPNPSSLMFYP--GKPVMEVGSADF----PNARAAMNSPLAKSLY-GVDG 124
           +R + I+T  TPN ++L F    G+ +   GS        +     +S LA+ ++    G
Sbjct: 14  QRLIHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPG 73
Query: 125 ITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLF 167
           +  +  G DF+T+ K     W+ +KPEI   +    + G+ + 
Sbjct: 74  VESLMIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAYGEDVI 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
1veh_A	92	NIFU-like protein hirip5; structural genomics, mou	8e-54
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	5e-47
2ltm_A	107	NFU1 iron-sulfur cluster scaffold homolog, mitoch;	8e-44
1pqx_A	91	Conserved hypothetical protein; ZR18,structure, au	5e-41
2k1h_A	94	Uncharacterized protein Ser13; structural genomics	2e-39
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	5e-39
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	1e-20
2ltl_A	119	NIFU-like protein, mitochondrial; structural genom	4e-38
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	1e-22

>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1 Length = 92

 Score =  168 bits (428), Expect = 8e-54
 Identities = 52/92 (56%), Positives = 70/92 (76%), Gaps = 2/92 (2%)

Query: 174 AAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGC 233
            +  ++ +E+D E VAMIKELL+TRIRP VQ+DGGD+ YRGF+   G V+L++QG+C+ C
Sbjct: 1   GSSGSSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFE--DGIVRLKLQGSCTSC 58

Query: 234 PSSSVTLKSGIENMLMHYVPEVKSVEQELDAE 265
           PSS +TLKSGI+NML  Y+PEV+ VEQ     
Sbjct: 59  PSSIITLKSGIQNMLQFYIPEVEGVEQVSGPS 90

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1 Length = 88

 Score =  151 bits (383), Expect = 5e-47
 Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 180 INEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVT 239
           +  ++      + E++E R+RP +  DGGD        E G VKL++ GAC  CPSS++T
Sbjct: 1   MPTENPTMFDQVAEVIE-RLRPFLLRDGGDCTLVDV--EDGIVKLQLHGACGTCPSSTIT 57

Query: 240 LKSGIENMLMHYVPEVKSVEQELDAEDEVA 269
           LK+GIE  L   VP V  VEQ         
Sbjct: 58  LKAGIERALHEEVPGVIEVEQVFLEHHHHH 87

>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens} Length = 107

 Score =  143 bits (362), Expect = 8e-44
 Identities = 56/105 (53%), Positives = 72/105 (68%), Gaps = 1/105 (0%)

Query: 66  NLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGI 125
                    MFIQTQ TPNP+SL F PGKPV+E  + DFP   AA  SPLA+ L+ ++G+
Sbjct: 2   GHHHHHHSHMFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGV 61

Query: 126 TRVFFGSDFITVTK-SEDTSWDLLKPEIFAAIMDFYSSGQPLFLD 169
             VFFG D ITVTK +E+  W+LLKP+I+A IMDF++SG PL  +
Sbjct: 62  KSVFFGPDSITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTE 106

>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A Length = 91

 Score =  135 bits (343), Expect = 5e-41
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 75  MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 134
             I    TPN +++     +    + S  +     +        +  V+G+  +F   DF
Sbjct: 2   KIISISETPNHNTMKITLSESREGMTSDTYTKVDDS-QPAFINDILKVEGVKSIFHVMDF 60

Query: 135 ITVTKSEDTSWDLLKPEIFAAIMDFYSSGQ 164
           I+V K  D +W+ + P++ A     +    
Sbjct: 61  ISVDKENDANWETVLPKVEAVFELEHHHHH 90

>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis} Length = 94

 Score =  131 bits (332), Expect = 2e-39
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 75  MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 134
             I    TPN +++     +P  +     +  A+          L+ ++G+  +F+  DF
Sbjct: 2   EIIAISETPNHNTMKVSLSEPRQDNSFTTYTAAQEG-QPEFINRLFEIEGVKSIFYVLDF 60

Query: 135 ITVTKSEDTSWDLLKPEIFAAIMDFYSSGQP 165
           I++ K ++ +W+ L P+I             
Sbjct: 61  ISIDKEDNANWNELLPQIENTFAKSNLEHHH 91

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A Length = 154

 Score =  132 bits (335), Expect = 5e-39
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 3/76 (3%)

Query: 185 SETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGI 244
             T   ++ +L+  IRP +  DGG++     D     V++++QGAC  CPSS++T+K GI
Sbjct: 3   PLTEENVESVLD-EIRPYLMSDGGNVALHEID--GNVVRVKLQGACGSCPSSTMTMKMGI 59

Query: 245 ENMLMHYVPEVKSVEQ 260
           E  LM  +PE+ +VE 
Sbjct: 60  ERRLMEKIPEIVAVEA 75

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A Length = 154

 Score = 84.8 bits (210), Expect = 1e-20
 Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 190 MIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLM 249
            I+++LE      +    G ++    +     VK+R+ G  +G     +T++  +   L 
Sbjct: 89  NIEKVLEEIRPYLIGTADGSLDLVEIED--PIVKIRITGPAAGV----MTVRVAVTQKLR 142

Query: 250 HYVPEVKSVEQ 260
             +P + +V+ 
Sbjct: 143 EKIPSIAAVQL 153

>2ltl_A NIFU-like protein, mitochondrial; structural genomics, northeast structural consortium, NESG, PSI-biology; NMR {Saccharomyces cerevisiae} Length = 119

 Score =  129 bits (325), Expect = 4e-38
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 71  QRRTMFIQTQPTPNPSSLMFYP--GKPVMEVGSADF----PNARAAMNSPLAKSLY-GVD 123
            +R + I+T  TPN ++L F    G+ +   GS        +     +S LA+ ++    
Sbjct: 13  SQRLIHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCP 72

Query: 124 GITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLD 169
           G+  +  G DF+T+ K     W+ +KPEI   +    + G+ +   
Sbjct: 73  GVESLMIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAYGEDVISK 118

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1 Length = 74

 Score = 87.7 bits (218), Expect = 1e-22
 Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 187 TVAMIKELLETRIRP-AVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIE 245
               ++++L   IRP      GG +++         VK+R+ G  +       T++  + 
Sbjct: 5   NEENVEKVLN-EIRPYLAGTGGGGLQFLMIKG--PIVKVRLTGPAAVV----RTVRIAVS 57

Query: 246 NMLMHYVPEVKSVEQ 260
             L   +P ++ V+ 
Sbjct: 58  KKLREKIPSIQIVQL 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
2ltm_A	107	NFU1 iron-sulfur cluster scaffold homolog, mitoch;	99.96
2ltl_A	119	NIFU-like protein, mitochondrial; structural genom	99.96
2k1h_A	94	Uncharacterized protein Ser13; structural genomics	99.97
1pqx_A	91	Conserved hypothetical protein; ZR18,structure, au	99.96
1veh_A	92	NIFU-like protein hirip5; structural genomics, mou	99.95
1xhj_A	88	Nitrogen fixation protein NIFU; alpha-beta, NIFU-l	99.94
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	99.86
1th5_A	74	NIFU1; iron-sulfur cluster binding, structural gen	99.85
2z51_A	154	NIFU-like protein 2, chloroplast; CNFU, iron-sulfu	99.73
3cq1_A	103	Putative uncharacterized protein TTHB138; DTDP-4-k	97.67
3lno_A	108	Putative uncharacterized protein; alpha-beta fold,	96.89
1uwd_A	103	Hypothetical protein TM0487; similar to PAAD prote	96.72
3ux2_A	130	MIP18 family protein FAM96A; immune system, DUF59,	83.99

>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}

Probab=99.96  E-value=2.4e-34  Score=231.61  Aligned_cols=97  Identities=58%  Similarity=1.043  Sum_probs=93.3

Q ss_pred             eeEEEEeeCCCCCCceeEeCCcccCCCcceecCChhhhcCcHHHhcccCCCCeeEEEEeCCeEEEEe-cCCCChhhhHHH
Q 023823           73 RTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTK-SEDTSWDLLKPE  151 (276)
Q Consensus        73 R~m~I~~E~TPNPn~LKF~p~~~l~~~gs~~F~~~~~A~~sPLA~~LF~i~gV~sVfi~~dFITVtK-~~~~dW~~Lkp~  151 (276)
                      -.||||||+|||||+|||+||+.|++.|+++|++.++|.+||||++||+|+||++||++.||||||| .++.+|+.|+|+
T Consensus         9 ~~~~~qtE~TPNPntLKF~p~~~vl~~gs~eF~~~~~a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~~~dW~~ikp~   88 (107)
T 2ltm_A            9 SHMFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDSITVTKENEELDWNLLKPD   88 (107)
Confidence            4699999999999999999999999989999999999999999999999999999999999999999 889999999999


Q ss_pred             HHHHHHHHHhcCCCCccc
Q 023823          152 IFAAIMDFYSSGQPLFLD  169 (276)
Q Consensus       152 I~~~I~DflsSG~PVv~e  169 (276)
                      |+++|++||.+|.|++.+
T Consensus        89 V~~~I~~~~~sG~pvv~~  106 (107)
T 2ltm_A           89 IYATIMDFFASGLPLVTE  106 (107)
Confidence            999999999999999864

>2ltl_A NIFU-like protein, mitochondrial; structural genomics, northeast structural consortium, NESG, PSI-biology; NMR {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.5e-34  Score=235.39  Aligned_cols=101  Identities=25%  Similarity=0.490  Sum_probs=96.0

Q ss_pred             cccceeEEEEeeCCCCCCceeEe-CCcccCCC--c-ceecCChhhhc--CcHHHhccc-CCCCeeEEEEeCCeEEEEecC
Q 023823           69 RVQRRTMFIQTQPTPNPSSLMFY-PGKPVMEV--G-SADFPNARAAM--NSPLAKSLY-GVDGITRVFFGSDFITVTKSE  141 (276)
Q Consensus        69 ~~~~R~m~I~~E~TPNPn~LKF~-p~~~l~~~--g-s~~F~~~~~A~--~sPLA~~LF-~i~gV~sVfi~~dFITVtK~~  141 (276)
                      ++.+|+||||+|+|||||+|||+ ||++|++.  | +++|++.++|.  +||||++|| +|+||++||++.|||||||.+
T Consensus        11 ~~~~R~mfIqtE~TPNPntLKF~sp~~~vl~~~~g~t~~f~~~~~a~~~~SPLA~~LF~~i~GV~~Vf~g~DFITVtK~~   90 (119)
T 2ltl_A           11 MNSQRLIHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVESLMIGDDFLTINKDR   90 (119)
Confidence            45799999999999999999999 99999876  5 89999999988  899999999 999999999999999999999


Q ss_pred             CCChhhhHHHHHHHHHHHHhcCCCCccc
Q 023823          142 DTSWDLLKPEIFAAIMDFYSSGQPLFLD  169 (276)
Q Consensus       142 ~~dW~~Lkp~I~~~I~DflsSG~PVv~e  169 (276)
                      +.+|+.|+|+|+++|++||.+|+|++.+
T Consensus        91 ~~dW~~ikp~I~~~I~e~~~sg~pvv~~  118 (119)
T 2ltl_A           91 MVHWNSIKPEIIDLLTKQLAYGEDVISK  118 (119)
Confidence            9999999999999999999999998854

>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}

Probab=99.97  E-value=6.7e-31  Score=207.25  Aligned_cols=85  Identities=20%  Similarity=0.441  Sum_probs=81.2

Q ss_pred             EEEeeCCCCCCceeEeCCcccCCCcceecCChhhhcCcHHHhcccCCCCeeEEEEeCCeEEEEecCCCChhhhHHHHHHH
Q 023823           76 FIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAA  155 (276)
Q Consensus        76 ~I~~E~TPNPn~LKF~p~~~l~~~gs~~F~~~~~A~~sPLA~~LF~i~gV~sVfi~~dFITVtK~~~~dW~~Lkp~I~~~  155 (276)
                      +||+|+|||||+|||+||+.+.++++.+|++.+ |.+||||++||+|+||++||++.|||||||.++.+|+.|+|+|+++
T Consensus         3 ~Iqte~TPNPntlKF~~~~~l~~g~s~~f~~~~-a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~~dW~~ikp~I~~~   81 (94)
T 2k1h_A            3 IIAISETPNHNTMKVSLSEPRQDNSFTTYTAAQ-EGQPEFINRLFEIEGVKSIFYVLDFISIDKEDNANWNELLPQIENT   81 (94)
T ss_dssp             CCCCBCCSSSSCEEEECCCCCTTCCCCEECCCC-TTSCHHHHHHHTSTTEEEEEEETTEEEEEECTTCCHHHHHHHHHHH
T ss_pred             eEEeecCCChhcEEEeCCCCcCCCCceecCCcc-ccCCHHHHHhhCCCCeeEEEEeCCEEEEecCCCCCHHHHHHHHHHH
Confidence            689999999999999999998877799999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 023823          156 IMDFYS  161 (276)
Q Consensus       156 I~Dfls  161 (276)
                      |++|+-
T Consensus        82 I~~~~~   87 (94)
T 2k1h_A           82 FAKSNL   87 (94)
T ss_dssp             HHHHC-
T ss_pred             HHHHHH
Confidence            999974

>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A

Probab=99.96  E-value=4.1e-30  Score=201.67  Aligned_cols=82  Identities=21%  Similarity=0.407  Sum_probs=78.8

Q ss_pred             EEEeeCCCCCCceeEeCCcccCCCcceecCChhhhcCcHHHhcccCCCCeeEEEEeCCeEEEEecCCCChhhhHHHHHHH
Q 023823           76 FIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAA  155 (276)
Q Consensus        76 ~I~~E~TPNPn~LKF~p~~~l~~~gs~~F~~~~~A~~sPLA~~LF~i~gV~sVfi~~dFITVtK~~~~dW~~Lkp~I~~~  155 (276)
                      +||+|+|||||+|||+||+.+.++++.+|++.+ |.+||||++||+|+||++||++.|||||||.++++|+.|+|+|+++
T Consensus         3 ~Iqte~TPNPn~lKF~~~~~l~~g~s~~F~~~~-a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~~dW~~ikp~V~~~   81 (91)
T 1pqx_A            3 IISISETPNHNTMKITLSESREGMTSDTYTKVD-DSQPAFINDILKVEGVKSIFHVMDFISVDKENDANWETVLPKVEAV   81 (91)
T ss_dssp             CCBCCCCSCSSEEEEECSCCSSCCCCEEESSSC-SSCCHHHHHHHHSTTEEEEEEETTEEEEEECTTSCSTTTHHHHHHH
T ss_pred             eEEeecCCChhcEEEeCCcCcCCCCceEeCCcc-ccCCHHHHHhhCCCCeeEEEEeCCEEEEecCCCCCHHHHHHHHHHH
Confidence            689999999999999999998877799999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHH
Q 023823          156 IMD  158 (276)
Q Consensus       156 I~D  158 (276)
                      |++
T Consensus        82 I~~   84 (91)
T 1pqx_A           82 FEL   84 (91)
T ss_dssp             TCS
T ss_pred             HHH
Confidence            975

>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1

Probab=99.95  E-value=1.3e-28  Score=193.44  Aligned_cols=87  Identities=60%  Similarity=1.031  Sum_probs=81.7

Q ss_pred             cccCCCCchHHHHHHHHHHHhcCCcchhcCCCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcc
Q 023823          177 DTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVK  256 (276)
Q Consensus       177 ~~~~~~~~~el~~~I~~vL~~~IrP~l~~dGGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~  256 (276)
                      ++.+.++++++.++|+++|+++|||+|++|||||+|++|+  +|+|+|||+|||+|||+|.+||+++||++|++++|||+
T Consensus         4 ~~~~~~~d~~~~~~I~~~L~~~IRP~L~~dGGdvelv~v~--~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~   81 (92)
T 1veh_A            4 GSSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFE--DGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVE   81 (92)
T ss_dssp             CCSSCSSCCHHHHHHHHHHHHTTHHHHHHHSCCCCEEEEE--TTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCC
T ss_pred             ccccCCCchHHHHHHHHHHHHHhhHHHHhcCCeEEEEEEe--CCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCC
Confidence            4556677899999999999999999999999999999998  68999999999999999999999999999999999999


Q ss_pred             eEeecCCcc
Q 023823          257 SVEQELDAE  265 (276)
Q Consensus       257 ~V~~~~~~~  265 (276)
                      .|+++++++
T Consensus        82 ~V~~v~~~~   90 (92)
T 1veh_A           82 GVEQVSGPS   90 (92)
T ss_dssp             CEEECSCSC
T ss_pred             EEEEcCCCC
Confidence            999998765

>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1

Probab=99.94  E-value=3.3e-27  Score=184.13  Aligned_cols=78  Identities=41%  Similarity=0.695  Sum_probs=73.9

Q ss_pred             chHHHHHHHHHHHhcCCcchhcCCCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeecCC
Q 023823          184 DSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELD  263 (276)
Q Consensus       184 ~~el~~~I~~vL~~~IrP~l~~dGGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~~  263 (276)
                      +.++.++|+++|++ |||+|++|||||+|++||  +|+|+|||+|||+|||+|++||+++||++|++++|||+.|++++|
T Consensus         5 ~~~~~~~I~~~L~~-IRP~L~~dGGdvelv~v~--~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v~~   81 (88)
T 1xhj_A            5 NPTMFDQVAEVIER-LRPFLLRDGGDCTLVDVE--DGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVFL   81 (88)
T ss_dssp             CSCHHHHHHHHHHH-HHHHHHHHSCEEEEEECC--SSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEEC
T ss_pred             hHHHHHHHHHHHHH-hcHHHHhcCCeEEEEEEE--CCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEeccc
Confidence            35689999999997 999999999999999997  799999999999999999999999999999999999999999887


Q ss_pred             c
Q 023823          264 A  264 (276)
Q Consensus       264 ~  264 (276)
                      +
T Consensus        82 ~   82 (88)
T 1xhj_A           82 E   82 (88)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A

Probab=99.86  E-value=1.2e-22  Score=173.11  Aligned_cols=77  Identities=39%  Similarity=0.733  Sum_probs=72.3

Q ss_pred             HHHHHHHHHhcCCcchhcCCCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeecCCcchH
Q 023823          188 VAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDE  267 (276)
Q Consensus       188 ~~~I~~vL~~~IrP~l~~dGGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~~~~~~  267 (276)
                      .++|+++|+ +|||+|++|||||+|++||  +|+|+|||+|+|+|||+|++||+++||++|++++|+|+.|+++.|++++
T Consensus         6 ~e~v~~~L~-~iRP~l~~dGGdvelv~v~--~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~V~~v~~~~e~   82 (154)
T 2z51_A            6 EENVESVLD-EIRPYLMSDGGNVALHEID--GNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETG   82 (154)
T ss_dssp             HHHHHHHHH-HHHHHHHHTTEEEEEEEEE--TTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEEECCSSCCS
T ss_pred             HHHHHHHHH-HhChHHHhcCCeEEEEEEE--CCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceEEEEccCchhh
Confidence            578999998 6999999999999999998  6899999999999999999999999999999999999999999877653

>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1

Probab=99.85  E-value=3.2e-22  Score=151.35  Aligned_cols=68  Identities=21%  Similarity=0.404  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHhcCCcchhcCC-CcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeec
Q 023823          187 TVAMIKELLETRIRPAVQDDG-GDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE  261 (276)
Q Consensus       187 l~~~I~~vL~~~IrP~l~~dG-GdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~  261 (276)
                      +.++|+++|++ |||+|++|| |||+|+++|  +|+|+|||+|||+||    +||+++||++|++++|||+.|+++
T Consensus         5 ~~~~V~~~L~~-iRP~L~~dGGGdvelv~v~--~g~V~v~l~GaC~gc----~Tlk~gIe~~L~~~vpei~~V~~v   73 (74)
T 1th5_A            5 NEENVEKVLNE-IRPYLAGTGGGGLQFLMIK--GPIVKVRLTGPAAVV----RTVRIAVSKKLREKIPSIQIVQLL   73 (74)
T ss_dssp             SHHHHHHHHTT-THHHHTTTTCCCCCCCEEE--TTEEEECCCSSSSSS----SSHHHHHHHHHHHHCTTCSEEEEC
T ss_pred             HHHHHHHHHHH-HhHHHHhcCCCcEEEEEEe--CCEEEEEEecCCcch----HHHHHHHHHHHHHHCCCCcEEEeC
Confidence            47899999996 999999999 999999998  789999999999999    699999999999999999999876

>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A

Probab=99.73  E-value=9.1e-18  Score=142.93  Aligned_cols=122  Identities=20%  Similarity=0.293  Sum_probs=88.4

Q ss_pred             eeEEEEeCCeEEEEecCC-----CChhhhHHHHHHHHHHHHhcCCCCcccchhhhhccccCCCCchHHHHHHHHHHHhcC
Q 023823          125 ITRVFFGSDFITVTKSED-----TSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRI  199 (276)
Q Consensus       125 V~sVfi~~dFITVtK~~~-----~dW~~Lkp~I~~~I~DflsSG~PVv~e~~~~~~~~~~~~~~~~el~~~I~~vL~~~I  199 (276)
                      |.=|-+.++.|.|.-...     ..=..++.-|...|.+++..    +....  +..+..  ...+...++|+++|+ .|
T Consensus        27 velv~v~~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpe----v~~V~--~v~~~~--e~l~L~~~~v~~~L~-~i   97 (154)
T 2z51_A           27 VALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPE----IVAVE--ALPDEE--TGLELNEENIEKVLE-EI   97 (154)
T ss_dssp             EEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTT----CCEEE--ECCSSC--CSCCSSHHHHHHHHH-HH
T ss_pred             EEEEEEECCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCC----ceEEE--EccCch--hhhHHHHHHHHHHHH-HH
Confidence            655556667676655331     12235777888888887622    11110  001111  111224689999999 59


Q ss_pred             Ccchhc-CCCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeec
Q 023823          200 RPAVQD-DGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE  261 (276)
Q Consensus       200 rP~l~~-dGGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~  261 (276)
                      ||+|++ |||||||+++|  +|+|+|||+|+|+||    +||+++||++|++++|+|++|+++
T Consensus        98 RP~L~~~dGGdvelv~v~--~~~v~v~l~Gac~~~----~Tlk~~Ie~~l~e~vP~i~~V~~~  154 (154)
T 2z51_A           98 RPYLIGTADGSLDLVEIE--DPIVKIRITGPAAGV----MTVRVAVTQKLREKIPSIAAVQLI  154 (154)
T ss_dssp             GGGCCGGGCCEEEEEEEE--TTEEEEEEESGGGGC----HHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred             HHHhhhcCCCCeEEEEEE--CCEEEEEEecCCccc----HhHHHHHHHHHHHHCCCccEEEeC
Confidence            999998 99999999998  799999999999998    799999999999999999999863

>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*

Probab=97.67  E-value=0.00021  Score=55.80  Aligned_cols=72  Identities=28%  Similarity=0.317  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHhcCCcchhcCC---CcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeecC
Q 023823          187 TVAMIKELLETRIRPAVQDDG---GDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQEL  262 (276)
Q Consensus       187 l~~~I~~vL~~~IrP~l~~dG---GdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~  262 (276)
                      ..+.|.++|.+-+.|.+..+-   |-|.-+.++  +|.|+|.|...+.+||... .+++.|+++|+ .+|+|..|+...
T Consensus         7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~--~~~V~v~l~lt~~~cp~~~-~l~~~i~~al~-~l~gv~~V~V~l   81 (103)
T 3cq1_A            7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVE--PPRAYVRMTLTTPGCPLHD-SLGEAVRQALS-RLPGVEEVEVEV   81 (103)
T ss_dssp             HHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEE--TTEEEEEECCSSSSCCSSC-HHHHHHHHHHH-TSTTCCEEEEEE
T ss_pred             HHHHHHHHHhCCCCCCCCcCchhcCceEEEEEE--CCEEEEEEEECCCCCcHHH-HHHHHHHHHHH-hCCCceeEEEEE
Confidence            567899999988999999887   778877777  5799999999999999965 68999999997 589998887654

>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0

Probab=96.89  E-value=0.0024  Score=50.25  Aligned_cols=76  Identities=24%  Similarity=0.320  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHHHhcCCcchhcC---CCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeec
Q 023823          185 SETVAMIKELLETRIRPAVQDD---GGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE  261 (276)
Q Consensus       185 ~el~~~I~~vL~~~IrP~l~~d---GGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~  261 (276)
                      +...++|.++|.+-+-|.+..+   -|-|.=+.+++ +|.|.|.|.-.+.+||... .++..|+.+|+..+|+|.+|...
T Consensus         7 ~~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~-~~~V~V~ltlt~p~cp~~~-~i~~~i~~al~~~l~Gv~~V~V~   84 (108)
T 3lno_A            7 EAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADE-NNNAVITMTMTSIGCPMAG-QIVSDVKKVLSTNVPEVNEIEVN   84 (108)
T ss_dssp             HHHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECT-TCCEEEEECCSCTTCTTHH-HHHHHHHHHHHHHCTTCCCEEEE
T ss_pred             hhhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECC-CCeEEEEEEECCCCCcHHH-HHHHHHHHHHHHhCCCCceEEEE
Confidence            3467889999998889988655   46777777762 4899999999999999876 78999999997779999988765


Q ss_pred             C
Q 023823          262 L  262 (276)
Q Consensus       262 ~  262 (276)
                      +
T Consensus        85 l   85 (108)
T 3lno_A           85 V   85 (108)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A

Probab=96.72  E-value=0.0056  Score=47.50  Aligned_cols=72  Identities=24%  Similarity=0.223  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhcCCcchhcCC---CcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeecC
Q 023823          188 VAMIKELLETRIRPAVQDDG---GDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQEL  262 (276)
Q Consensus       188 ~~~I~~vL~~~IrP~l~~dG---GdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~  262 (276)
                      .+.|.++|.+-+-|.+..+-   |-|.=+.+++ +|.|+|.|.-.+.+||... .+++.|+++|+ .+|+|.+|+..+
T Consensus         8 ~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~-~~~V~v~l~lt~~~cp~~~-~l~~~i~~al~-~l~gv~~v~V~l   82 (103)
T 1uwd_A            8 KEDVLNALKNVIDFELGLDVVSLGLVYDIQIDD-QNNVKVLMTMTTPMCPLAG-MILSDAEEAIK-KIEGVNNVEVEL   82 (103)
T ss_dssp             HHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECT-TCEEEEEECCSSSCCSSHH-HHHHHHHHHHH-TSSSCCEEEEEE
T ss_pred             HHHHHHHHcCCCCCCCCcChhhcCCeeEEEEcC-CCEEEEEEEECCCCCcHHH-HHHHHHHHHHH-hCCCcceEEEEE
Confidence            46788999987779988775   6666566652 3799999999999999855 78999999997 589998887654

>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A

Probab=83.99  E-value=1.5  Score=35.93  Aligned_cols=53  Identities=15%  Similarity=0.245  Sum_probs=40.2

Q ss_pred             EEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeecCC
Q 023823          210 IEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELD  263 (276)
Q Consensus       210 Ielv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~~  263 (276)
                      |.+..++.+++.|.|.|+=.=.|||+++. +-..|+.+|.+.+|...+|+....
T Consensus        40 I~v~~~~~~~~~V~V~~TPT~p~Cp~a~~-I~l~Ir~kL~~~lp~~~kV~v~I~   92 (130)
T 3ux2_A           40 VEVQEINEEEYLVIIRFTPTVPHCSLATL-IGLCLRVKLQRCLPFKHKLEIYIS   92 (130)
T ss_dssp             EEEEEEETTEEEEEECCCCCCCSSCHHHH-HHHHHHHHHHHHCSSCCCCCCCCC
T ss_pred             eEeecccCCCCeEEEEEEeCCCCCCchHH-HHHHHHHHHHHhCCCceEEEEEEC
Confidence            33333444567899999999999999985 567899999999998777765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	276
d1veha_	92	d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {	1e-37
d2ffma1	83	d.267.1.1 (A:1-83) Hypothetical protein SAV1430 {S	1e-31
d1xhja_	88	d.52.8.1 (A:) Nitrogen fixation protein NifU homol	7e-31
d1th5a1	73	d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {	5e-22

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 92

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  126 bits (317), Expect = 1e-37
 Identities = 52/90 (57%), Positives = 70/90 (77%), Gaps = 2/90 (2%)

Query: 174 AAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGC 233
            +  ++ +E+D E VAMIKELL+TRIRP VQ+DGGD+ YRGF+   G V+L++QG+C+ C
Sbjct: 1   GSSGSSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFED--GIVRLKLQGSCTSC 58

Query: 234 PSSSVTLKSGIENMLMHYVPEVKSVEQELD 263
           PSS +TLKSGI+NML  Y+PEV+ VEQ   
Sbjct: 59  PSSIITLKSGIQNMLQFYIPEVEGVEQVSG 88

>d2ffma1 d.267.1.1 (A:1-83) Hypothetical protein SAV1430 {Staphylococcus aureus [TaxId: 1280]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein SAV1430
superfamily: Hypothetical protein SAV1430
family: Hypothetical protein SAV1430
domain: Hypothetical protein SAV1430
species: Staphylococcus aureus [TaxId: 1280]

 Score =  110 bits (276), Expect = 1e-31
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 75  MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDF 134
             I    TPN +++     +    + S  +     +        +  V+G+  +F   DF
Sbjct: 2   KIISISETPNHNTMKITLSESREGMTSDTYTKVDDS-QPAFINDILKVEGVKSIFHVMDF 60

Query: 135 ITVTKSEDTSWDLLKPEIFAAI 156
           I+V K  D +W+ + P++ A  
Sbjct: 61  ISVDKENDANWETVLPKVEAVF 82

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]} Length = 88

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

 Score =  108 bits (272), Expect = 7e-31
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 180 INEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVT 239
           +  ++      + E++E R+RP +  DGGD      +   G VKL++ GAC  CPSS++T
Sbjct: 1   MPTENPTMFDQVAEVIE-RLRPFLLRDGGDCTLVDVE--DGIVKLQLHGACGTCPSSTIT 57

Query: 240 LKSGIENMLMHYVPEVKSVEQ 260
           LK+GIE  L   VP V  VEQ
Sbjct: 58  LKAGIERALHEEVPGVIEVEQ 78

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]} Length = 73

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 84.8 bits (210), Expect = 5e-22
 Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 8/70 (11%)

Query: 191 IKELLETRIRPAVQ-DDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLM 249
           ++++L   IRP +    GG +++         VK+R+ G  +       T++  +   L 
Sbjct: 8   VEKVLN-EIRPYLAGTGGGGLQFLMIK--GPIVKVRLTGPAAVVR----TVRIAVSKKLR 60

Query: 250 HYVPEVKSVE 259
             +P ++ V+
Sbjct: 61  EKIPSIQIVQ 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d1veha_	92	HIRA-interacting protein 5, HIRIP5 {Mouse (Mus mus	99.94
d2ffma1	83	Hypothetical protein SAV1430 {Staphylococcus aureu	99.93
d1xhja_	88	Nitrogen fixation protein NifU homolog SE0630 {Sta	99.92
d1th5a1	73	NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [	99.83
d2cu6a1	91	Hypothetical protein TTHB138 {Thermus thermophilus	96.41
d1uwda_	102	Hypothetical protein TM0487 {Thermotoga maritima [	95.66

>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: HIRA-interacting protein 5, HIRIP5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=7.7e-28  Score=187.25  Aligned_cols=83  Identities=63%  Similarity=1.088  Sum_probs=79.1

Q ss_pred             CCCchHHHHHHHHHHHhcCCcchhcCCCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEee
Q 023823          181 NEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQ  260 (276)
Q Consensus       181 ~~~~~el~~~I~~vL~~~IrP~l~~dGGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~  260 (276)
                      .++++++.++|+++|+++|||+|++|||||+|++|+  +|+|+|+|+|+|+|||+|++||+++||++|++++|||+.|++
T Consensus         8 ~~~d~e~~~~I~~vL~~~IrP~l~~dGGdv~lv~v~--~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~~vpev~~V~~   85 (92)
T d1veha_           8 SEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFE--DGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQ   85 (92)
T ss_dssp             CSSCCHHHHHHHHHHHHTTHHHHHHHSCCCCEEEEE--TTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEE
T ss_pred             CCccHHHHHHHHHHHHHhcChHHHHcCCceEEEEee--CCeEEEEEccCCCCChhHHHHHHHHHHHHHHHHCCCcceEEE
Confidence            457889999999999999999999999999999998  799999999999999999999999999999999999999999


Q ss_pred             cCCcc
Q 023823          261 ELDAE  265 (276)
Q Consensus       261 ~~~~~  265 (276)
                      +.|+.
T Consensus        86 v~~~~   90 (92)
T d1veha_          86 VSGPS   90 (92)
T ss_dssp             CSCSC
T ss_pred             cCCCC
Confidence            98764

>d2ffma1 d.267.1.1 (A:1-83) Hypothetical protein SAV1430 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein SAV1430
superfamily: Hypothetical protein SAV1430
family: Hypothetical protein SAV1430
domain: Hypothetical protein SAV1430
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.93  E-value=6.9e-27  Score=178.52  Aligned_cols=81  Identities=21%  Similarity=0.431  Sum_probs=75.7

Q ss_pred             EEEEeeCCCCCCceeEeCCcccCCCcceecCChhhhcCcHHHhcccCCCCeeEEEEeCCeEEEEecCCCChhhhHHHHHH
Q 023823           75 MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFA  154 (276)
Q Consensus        75 m~I~~E~TPNPn~LKF~p~~~l~~~gs~~F~~~~~A~~sPLA~~LF~i~gV~sVfi~~dFITVtK~~~~dW~~Lkp~I~~  154 (276)
                      ++|++|+|||||+|||++++.+..+|+.+|++.++ ..+|||++||+++||++||+++|||||+|.++++|++|+++|++
T Consensus         2 ~~I~~e~TPNPn~lKFi~~~~l~~~~~~~~~~~~~-~~~pla~~Lf~i~gV~~Vf~~~dFITVtK~~~~~W~~l~~~I~~   80 (83)
T d2ffma1           2 KIISISETPNHNTMKITLSESREGMTSDTYTKVDD-SQPAFINDILKVEGVKSIFHVMDFISVDKENDANWETVLPKVEA   80 (83)
T ss_dssp             CEEEEEECSSSSEEEEEESSCCSSSCCEEECSCCT-TSCHHHHHHHTSTTEEEEEEETTEEEEEECTTCCHHHHHHHHHH
T ss_pred             cEEEcccCCCcccEEEecCccccCCCceeeCchhh-hcCHHHHHHHcCCCceEEEEeCCEEEEEeCCCCCHHHHHHHHHH
Confidence            57899999999999999999999989999998775 47999999999999999999999999999999999999999987


Q ss_pred             HH
Q 023823          155 AI  156 (276)
Q Consensus       155 ~I  156 (276)
                      ++
T Consensus        81 ~~   82 (83)
T d2ffma1          81 VF   82 (83)
T ss_dssp             TT
T ss_pred             Hh
Confidence            64

>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: Nitrogen fixation protein NifU homolog SE0630
species: Staphylococcus epidermidis [TaxId: 1282]

Probab=99.92  E-value=4.6e-26  Score=175.83  Aligned_cols=79  Identities=43%  Similarity=0.751  Sum_probs=73.7

Q ss_pred             CchHHHHHHHHHHHhcCCcchhcCCCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeec-
Q 023823          183 DDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE-  261 (276)
Q Consensus       183 ~~~el~~~I~~vL~~~IrP~l~~dGGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~-  261 (276)
                      ++.++.++|+++|+ +|||+|++|||||+|++++  +|+|+|||+|||+|||+|.+||+++||++|++++|+|+.|+.+ 
T Consensus         4 ~~~~l~~~I~~vLe-~IRP~l~~dGGdvelv~v~--~g~V~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~~vpev~~V~~V~   80 (88)
T d1xhja_           4 ENPTMFDQVAEVIE-RLRPFLLRDGGDCTLVDVE--DGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVF   80 (88)
T ss_dssp             CCSCHHHHHHHHHH-HHHHHHHHHSCEEEEEECC--SSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred             CcHHHHHHHHHHHH-HhhHHHHhCCCcEEEEecc--CCEEEEEecCCCCCCccHHHHHHHHHHHHHHHHCCCCceEEEec
Confidence            46779999999997 6999999999999999997  7999999999999999999999999999999999999999986 


Q ss_pred             CCc
Q 023823          262 LDA  264 (276)
Q Consensus       262 ~~~  264 (276)
                      ++.
T Consensus        81 ~~~   83 (88)
T d1xhja_          81 LEH   83 (88)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            444

>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: NifU C-terminal domain-like
domain: NifU-like protein 1, NIFUL1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.83  E-value=1.1e-21  Score=146.30  Aligned_cols=67  Identities=21%  Similarity=0.416  Sum_probs=62.3

Q ss_pred             HHHHHHHHHhcCCcchh-cCCCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeec
Q 023823          188 VAMIKELLETRIRPAVQ-DDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE  261 (276)
Q Consensus       188 ~~~I~~vL~~~IrP~l~-~dGGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~  261 (276)
                      .++|+++|+ +|||+|+ +|||||+|+++|  +|+|+|||+|+|+||+    ||+++||++|++++|||+.|+.+
T Consensus         5 ee~V~~vL~-eirP~l~a~dGGdvelv~i~--~~~v~v~l~GaC~gC~----Tl~~gIe~~L~~~iPei~~V~~v   72 (73)
T d1th5a1           5 EENVEKVLN-EIRPYLAGTGGGGLQFLMIK--GPIVKVRLTGPAAVVR----TVRIAVSKKLREKIPSIQIVQLL   72 (73)
T ss_dssp             HHHHHHHHT-TTHHHHTTTTCCCCCCCEEE--TTEEEECCCSSSSSSS----SHHHHHHHHHHHHCTTCSEEEEC
T ss_pred             HHHHHHHHH-HhcccccccCCceEEEEEec--CCEEEEEecCCCcccc----hHHHHHHHHHHHHCCCccEEEec
Confidence            578999998 6999997 699999999998  7999999999999994    99999999999999999999875

>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TTHB138
species: Thermus thermophilus [TaxId: 274]

Probab=96.41  E-value=0.005  Score=45.40  Aligned_cols=74  Identities=27%  Similarity=0.282  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHhcCCcchhcC---CCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeecCC
Q 023823          187 TVAMIKELLETRIRPAVQDD---GGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELD  263 (276)
Q Consensus       187 l~~~I~~vL~~~IrP~l~~d---GGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~~  263 (276)
                      ++++|.++|..-+-|.+..+   =|=|.-+.++  +|.|.|.|.-.+.+||.... +.+.|+++|+ .+|+|.+|+..+.
T Consensus         2 le~~v~eaL~~V~DPe~~~dIv~LGlV~~i~i~--~~~v~v~l~lt~~~cp~~~~-i~~~i~~al~-~l~gv~~V~V~~~   77 (91)
T d2cu6a1           2 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVE--PPRAYVRMTLTTPGCPLHDS-LGEAVRQALS-RLPGVEEVEVEVT   77 (91)
T ss_dssp             HHHHHHHHHTTCEETTTTEETTTTTCEEEEEEE--TTEEEEEECCSSSSCCSSCH-HHHHHHHHHH-TSTTCCEEEEEEC
T ss_pred             hHHHHHHHHhcCCCCCCCcChhhccceeEEEEe--ccccEEEEEcCCCCCcHHHH-HHHHHHHHHH-cCCCCceEEEEEE
Confidence            57889999998899988665   4667777776  68999999999999998874 8889999997 4899999887654


Q ss_pred             c
Q 023823          264 A  264 (276)
Q Consensus       264 ~  264 (276)
                      .
T Consensus        78 ~   78 (91)
T d2cu6a1          78 F   78 (91)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TM0487
species: Thermotoga maritima [TaxId: 2336]

Probab=95.66  E-value=0.02  Score=42.99  Aligned_cols=73  Identities=23%  Similarity=0.215  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhcCCcchhcC---CCcEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHHhCCCcceEeecCC
Q 023823          188 VAMIKELLETRIRPAVQDD---GGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELD  263 (276)
Q Consensus       188 ~~~I~~vL~~~IrP~l~~d---GGdIelv~~d~~~g~V~Vrl~GaC~gCpss~~TLk~~Ie~~L~~~vPeV~~V~~~~~  263 (276)
                      .+.|.++|.+.+-|.+..+   =|=|.-+.+++ +|.|.|.|.=.+.+||... .+.+.|++.|+ .+|+|.+|.....
T Consensus         7 ~~~V~~aL~~V~DPe~~~dIV~LGlV~~i~I~~-~g~V~v~~~lt~~~Cp~~~-~i~~~i~~al~-~~~gV~~v~V~i~   82 (102)
T d1uwda_           7 KEDVLNALKNVIDFELGLDVVSLGLVYDIQIDD-QNNVKVLMTMTTPMCPLAG-MILSDAEEAIK-KIEGVNNVEVELT   82 (102)
T ss_dssp             HHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECT-TCEEEEEECCSSSCCSSHH-HHHHHHHHHHH-TSSSCCEEEEEEC
T ss_pred             HHHHHHHHhCCCCCCCCcceeeccceeeEEecc-ccceEEEEecCCCCCchHH-HHHHHHHHHHH-cCCCCceEEEEEE
Confidence            4678888888888988554   24455555662 4799999999999999877 58889999999 5899998887654