Citrus Sinensis ID: 023853

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
MVIPLAQNKFDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK
cccccccccccccccccccccccccHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHcccccccEEEcHHHHHHHHHHHHHHHHcccccccccEEEccccccccccccccccccccccHHHHHHHHcccccccHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccccEEEEEEEEccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHc
cccEEEEEccccccccEEEEEcHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHccccHHHcEccEEEcccHHHEEEcHHHcEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccEEEEEEEEEccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
mviplaqnkfdvdsravrgflgqqqledaltgmdiviipagvprkpgmtrddlfnINAGIVKTLCEGIAKCCPKAIVNlisnpvnstvPIAAEVFkkvgtydpkrllGVTMLDVVRANTFVAEVlgldprevdvpvvgghagvTILPllsqvkpscsltpteiDYLTDriqnggtevveaktgagsaTLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGieeiyslgplneyeRAGLEKAKKELAGSIQKGVSFVRK
mviplaqnkfdvdsraVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAevlgldprevdVPVVGGHAGVTilpllsqvkpsCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEiyslgplnEYERAGLEKAKKElagsiqkgvsfvrk
MVIPLAQNKFDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK
***********VDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYE************************
*VIPLAQNKFDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR*
MVIPLAQNKFDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK
MVIPLAQNKFDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK
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MVIPLAQNKFDVDSRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query276 2.2.26 [Sep-21-2011]
P19446356 Malate dehydrogenase, gly N/A no 0.938 0.727 0.907 1e-135
P46488356 Malate dehydrogenase, gly N/A no 0.938 0.727 0.895 1e-134
P37228353 Malate dehydrogenase, gly yes no 0.942 0.736 0.873 1e-132
Q42972356 Malate dehydrogenase, gly yes no 0.942 0.730 0.876 1e-132
O82399354 Probable malate dehydroge yes no 0.952 0.742 0.851 1e-130
Q9ZP05354 Malate dehydrogenase, gly no no 0.942 0.734 0.873 1e-124
Q9XFW3358 Malate dehydrogenase 2, g N/A no 0.942 0.726 0.873 1e-124
Q43743358 Malate dehydrogenase 1, g N/A no 0.942 0.726 0.869 1e-124
P17783347 Malate dehydrogenase, mit N/A no 0.949 0.755 0.665 3e-97
Q9ZP06341 Malate dehydrogenase 1, m no no 0.960 0.777 0.654 2e-96
>sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1 Back     alignment and function desciption
 Score =  481 bits (1239), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 235/259 (90%), Positives = 245/259 (94%)

Query: 17  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 76
           VRGFLGQQQLE ALTGMD++I+PAGVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AI
Sbjct: 97  VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 156

Query: 77  VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 136
           VNLISNPVNSTVPIAAEVFKK GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPV
Sbjct: 157 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 216

Query: 137 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 196
           VGGHAGVTILPLLSQVKP  S T  EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA 
Sbjct: 217 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAV 276

Query: 197 KFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 256
           KFADACLRGLRGDAGVIECA+V+S VTELPFFASKVRLGR GIEE+YSLGPLNEYER GL
Sbjct: 277 KFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGL 336

Query: 257 EKAKKELAGSIQKGVSFVR 275
           EKAKKELAGSI+KGVSF+R
Sbjct: 337 EKAKKELAGSIEKGVSFIR 355

Citrullus lanatus (taxid: 3654)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7
>sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1 Back     alignment and function description
>sp|P37228|MDHG_SOYBN Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2 Back     alignment and function description
>sp|Q42972|MDHG_ORYSJ Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3 Back     alignment and function description
>sp|O82399|MDHG2_ARATH Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZP05|MDHG1_ARATH Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1 Back     alignment and function description
>sp|Q9XFW3|MDHG2_BRANA Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1 Back     alignment and function description
>sp|Q43743|MDHG1_BRANA Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2 Back     alignment and function description
>sp|P17783|MDHM_CITLA Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1 Back     alignment and function description
>sp|Q9ZP06|MDHM1_ARATH Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
359496625356 PREDICTED: malate dehydrogenase, glyoxys 0.942 0.730 0.923 1e-136
224097202354 predicted protein [Populus trichocarpa] 0.952 0.742 0.893 1e-134
60593475362 Chain A, Mature And Translocatable Forms 0.938 0.715 0.907 1e-133
126894356 RecName: Full=Malate dehydrogenase, glyo 0.938 0.727 0.907 1e-133
359475502356 PREDICTED: malate dehydrogenase, glyoxys 0.942 0.730 0.896 1e-133
60593487326 Chain A, Mature And Translocatable Forms 0.938 0.794 0.907 1e-133
255582419332 malate dehydrogenase, putative [Ricinus 0.942 0.783 0.9 1e-133
449451347356 PREDICTED: malate dehydrogenase, glyoxys 0.938 0.727 0.895 1e-132
1170897356 RecName: Full=Malate dehydrogenase, glyo 0.938 0.727 0.895 1e-132
356541520353 PREDICTED: malate dehydrogenase, glyoxys 0.942 0.736 0.876 1e-131
>gi|359496625|ref|XP_002263670.2| PREDICTED: malate dehydrogenase, glyoxysomal [Vitis vinifera] gi|297739396|emb|CBI29427.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/260 (92%), Positives = 245/260 (94%)

Query: 17  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 76
           VRGFLGQQQLEDALTGMD+VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP AI
Sbjct: 97  VRGFLGQQQLEDALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPNAI 156

Query: 77  VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 136
           VNLISNPVNSTVPIAAEVFKK GT+DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV
Sbjct: 157 VNLISNPVNSTVPIAAEVFKKAGTFDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 216

Query: 137 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 196
           VGGHAGVTILPLLSQVKP CS TP EIDYLT RIQNGGTEVVEAK GAGSATLSMAYAA 
Sbjct: 217 VGGHAGVTILPLLSQVKPPCSFTPEEIDYLTARIQNGGTEVVEAKAGAGSATLSMAYAAV 276

Query: 197 KFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 256
           KFAD CLRGLRGDAGVI+CAYV S VTELPFFASKVRLGR G EEIY LGPLNEYERAGL
Sbjct: 277 KFADTCLRGLRGDAGVIQCAYVFSQVTELPFFASKVRLGRTGAEEIYPLGPLNEYERAGL 336

Query: 257 EKAKKELAGSIQKGVSFVRK 276
           EKAKKELA SIQKG+SF+RK
Sbjct: 337 EKAKKELASSIQKGISFIRK 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224097202|ref|XP_002310874.1| predicted protein [Populus trichocarpa] gi|222853777|gb|EEE91324.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|60593475|pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures gi|60593476|pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Back     alignment and taxonomy information
>gi|126894|sp|P19446.1|MDHG_CITLA RecName: Full=Malate dehydrogenase, glyoxysomal; Flags: Precursor gi|167284|gb|AAA33041.1| glyoxysomal malate dehydrogenase precursor (EC 1.1.1.37) [Citrullus lanatus subsp. vulgaris] Back     alignment and taxonomy information
>gi|359475502|ref|XP_003631692.1| PREDICTED: malate dehydrogenase, glyoxysomal [Vitis vinifera] gi|147774268|emb|CAN65552.1| hypothetical protein VITISV_033330 [Vitis vinifera] gi|297736349|emb|CBI25072.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|60593487|pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures gi|60593488|pdb|1SMK|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures gi|60593489|pdb|1SMK|C Chain C, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures gi|60593490|pdb|1SMK|D Chain D, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures gi|60593491|pdb|1SMK|E Chain E, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures gi|60593492|pdb|1SMK|F Chain F, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures gi|60593493|pdb|1SMK|G Chain G, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures gi|60593494|pdb|1SMK|H Chain H, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Back     alignment and taxonomy information
>gi|255582419|ref|XP_002531998.1| malate dehydrogenase, putative [Ricinus communis] gi|223528357|gb|EEF30397.1| malate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449451347|ref|XP_004143423.1| PREDICTED: malate dehydrogenase, glyoxysomal-like [Cucumis sativus] gi|449499834|ref|XP_004160930.1| PREDICTED: malate dehydrogenase, glyoxysomal-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|1170897|sp|P46488.1|MDHG_CUCSA RecName: Full=Malate dehydrogenase, glyoxysomal; Flags: Precursor gi|695311|gb|AAC41647.1| glyoxysomal malate dehydrogenase [Cucumis sativus] Back     alignment and taxonomy information
>gi|356541520|ref|XP_003539223.1| PREDICTED: malate dehydrogenase, glyoxysomal [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query276
TAIR|locus:2062240354 PMDH1 "peroxisomal NAD-malate 0.952 0.742 0.851 1.1e-117
TAIR|locus:2144781363 PMDH2 "peroxisomal NAD-malate 0.764 0.581 0.872 4.2e-95
TAIR|locus:2009605341 mMDH1 "mitochondrial malate de 0.960 0.777 0.654 2.5e-88
TAIR|locus:2086340341 mMDH2 "mitochondrial malate de 0.960 0.777 0.650 8.6e-88
TAIR|locus:2079177403 MDH "malate dehydrogenase" [Ar 0.942 0.645 0.633 5e-83
FB|FBgn0262559336 Mdh2 "Malate dehydrogenase 2" 0.949 0.779 0.589 3.3e-79
ZFIN|ZDB-GENE-040426-2143337 mdh2 "malate dehydrogenase 2, 0.952 0.780 0.564 1.3e-75
UNIPROTKB|E1BVT3337 MDH2 "Malate dehydrogenase" [G 0.956 0.783 0.558 1.7e-75
UNIPROTKB|F1PYG8338 MDH2 "Malate dehydrogenase" [C 0.956 0.781 0.543 3.1e-74
UNIPROTKB|I3LP41338 MDH2 "Malate dehydrogenase" [S 0.956 0.781 0.547 3.1e-74
TAIR|locus:2062240 PMDH1 "peroxisomal NAD-malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
 Identities = 224/263 (85%), Positives = 242/263 (92%)

Query:    14 SRAVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCP 73
             S  VRGFLGQ QLE+ALTGMD+VIIPAGVPRKPGMTRDDLFNINAGIV+TL E IAKCCP
Sbjct:    92 SAVVRGFLGQPQLEEALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLSEAIAKCCP 151

Query:    74 KAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD 133
             KAIVN+ISNPVNSTVPIAAEVFKK GT+DPK+L+GVTMLDVVRANTFVAEV+ LDPREV+
Sbjct:   152 KAIVNIISNPVNSTVPIAAEVFKKAGTFDPKKLMGVTMLDVVRANTFVAEVMSLDPREVE 211

Query:   134 VPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAY 193
             VPVVGGHAGVTILPLLSQVKP CS T  EI+YLTDRIQNGGTEVVEAK GAGSATLSMAY
Sbjct:   212 VPVVGGHAGVTILPLLSQVKPPCSFTQKEIEYLTDRIQNGGTEVVEAKAGAGSATLSMAY 271

Query:   194 AAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYER 253
             AA +FADACLRGLRGDA ++ECAYVAS VTELPFFASKVRLGR GI+E+Y LGPLNEYER
Sbjct:   272 AAVEFADACLRGLRGDANIVECAYVASHVTELPFFASKVRLGRCGIDEVYGLGPLNEYER 331

Query:   254 AGLEKAKKELAGSIQKGVSFVRK 276
              GLEKAKKEL+ SI KGV+F +K
Sbjct:   332 MGLEKAKKELSVSIHKGVTFAKK 354
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006108 "malate metabolic process" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA
GO:0030060 "L-malate dehydrogenase activity" evidence=IEA
GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005777 "peroxisome" evidence=IDA
GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP
GO:0009507 "chloroplast" evidence=IDA
GO:0080093 "regulation of photorespiration" evidence=IMP
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0007031 "peroxisome organization" evidence=RCA
GO:0009062 "fatty acid catabolic process" evidence=RCA
TAIR|locus:2144781 PMDH2 "peroxisomal NAD-malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009605 mMDH1 "mitochondrial malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086340 mMDH2 "mitochondrial malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079177 MDH "malate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0262559 Mdh2 "Malate dehydrogenase 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2143 mdh2 "malate dehydrogenase 2, NAD (mitochondrial)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BVT3 MDH2 "Malate dehydrogenase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PYG8 MDH2 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3LP41 MDH2 "Malate dehydrogenase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q43743MDHG1_BRANA1, ., 1, ., 1, ., 3, 70.86920.94200.7262N/Ano
Q5NVR2MDHM_PONAB1, ., 1, ., 1, ., 3, 70.53300.98180.8017yesno
B1LGK2MDH_ECOSM1, ., 1, ., 1, ., 3, 70.55760.93470.8269yesno
C4ZSX4MDH_ECOBW1, ., 1, ., 1, ., 3, 70.55760.93470.8269yesno
Q42972MDHG_ORYSJ1, ., 1, ., 1, ., 3, 70.87690.94200.7303yesno
P08249MDHM_MOUSE1, ., 1, ., 1, ., 3, 70.54510.96010.7840yesno
B7LRL0MDH_ESCF31, ., 1, ., 1, ., 3, 70.55380.93470.8269yesno
P83373MDHM_FRAAN1, ., 1, ., 1, ., 3, 70.63000.98550.8023N/Ano
Q0TCN0MDH_ECOL51, ., 1, ., 1, ., 3, 70.56150.93470.8269yesno
A8A545MDH_ECOHS1, ., 1, ., 1, ., 3, 70.55760.93470.8269yesno
Q1R6A3MDH_ECOUT1, ., 1, ., 1, ., 3, 70.55760.93470.8269yesno
P46488MDHG_CUCSA1, ., 1, ., 1, ., 3, 70.89570.93840.7275N/Ano
A7MWD3MDH_VIBHB1, ., 1, ., 1, ., 3, 70.55380.93470.8295yesno
Q32LG3MDHM_BOVIN1, ., 1, ., 1, ., 3, 70.54130.96010.7840yesno
A1AGC9MDH_ECOK11, ., 1, ., 1, ., 3, 70.55760.93470.8269yesno
Q9XFW3MDHG2_BRANA1, ., 1, ., 1, ., 3, 70.87300.94200.7262N/Ano
P61889MDH_ECOLI1, ., 1, ., 1, ., 3, 70.55760.93470.8269N/Ano
B7N0M1MDH_ECO811, ., 1, ., 1, ., 3, 70.55760.93470.8269yesno
Q31WA4MDH_SHIBS1, ., 1, ., 1, ., 3, 70.55760.93470.8269yesno
P37228MDHG_SOYBN1, ., 1, ., 1, ., 3, 70.87300.94200.7365yesno
O02640MDHM_CAEEL1, ., 1, ., 1, ., 3, 70.55310.97820.7917yesno
B7LHU4MDH_ECO551, ., 1, ., 1, ., 3, 70.55760.93470.8269yesno
P40926MDHM_HUMAN1, ., 1, ., 1, ., 3, 70.55380.94200.7692yesno
B4T769MDH_SALNS1, ., 1, ., 1, ., 3, 70.55760.93470.8269yesno
B1IQP3MDH_ECOLC1, ., 1, ., 1, ., 3, 70.55760.93470.8269yesno
P04636MDHM_RAT1, ., 1, ., 1, ., 3, 70.54880.96010.7840yesno
B1XHK9MDH_ECODH1, ., 1, ., 1, ., 3, 70.55760.93470.8269yesno
P19446MDHG_CITLA1, ., 1, ., 1, ., 3, 70.90730.93840.7275N/Ano
Q5R030MDH_IDILO1, ., 1, ., 1, ., 3, 70.57970.92020.8193yesno
B5YSW2MDH_ECO5E1, ., 1, ., 1, ., 3, 70.55760.93470.8269yesno
P00346MDHM_PIG1, ., 1, ., 1, ., 3, 70.53670.98180.8017yesno
B7NKU9MDH_ECO7I1, ., 1, ., 1, ., 3, 70.55760.93470.8269yesno
Q3YX11MDH_SHISS1, ., 1, ., 1, ., 3, 70.55760.93470.8269yesno
O82399MDHG2_ARATH1, ., 1, ., 1, ., 3, 70.85170.95280.7429yesno
P61890MDH_ECOL61, ., 1, ., 1, ., 3, 70.55760.93470.8269yesno
Q7MYW9MDH_PHOLL1, ., 1, ., 1, ., 3, 70.54610.93470.8269yesno
B2U1U9MDH_SHIB31, ., 1, ., 1, ., 3, 70.55760.93470.8269yesno
P61891MDH_ECO571, ., 1, ., 1, ., 3, 70.55760.93470.8269N/Ano
Q87SU7MDH_VIBPA1, ., 1, ., 1, ., 3, 70.56150.93470.8295yesno
Q8Z3E0MDH_SALTI1, ., 1, ., 1, ., 3, 70.55760.93470.8269N/Ano
Q4R568MDHM_MACFA1, ., 1, ., 1, ., 3, 70.52940.98180.8017N/Ano
B7M0U8MDH_ECO8A1, ., 1, ., 1, ., 3, 70.55760.93470.8269yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.976
3rd Layer1.1.1.370.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
PLN00106323 PLN00106, PLN00106, malate dehydrogenase 0.0
cd01337310 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma 1e-169
PRK05086312 PRK05086, PRK05086, malate dehydrogenase; Provisio 1e-123
TIGR01772312 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, 1e-123
PTZ00325321 PTZ00325, PTZ00325, malate dehydrogenase; Provisio 1e-114
COG0039313 COG0039, Mdh, Malate/lactate dehydrogenases [Energ 4e-67
pfam02866173 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, 9e-59
cd01339300 cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik 2e-42
PRK06223307 PRK06223, PRK06223, malate dehydrogenase; Reviewed 4e-41
cd00650263 cd00650, LDH_MDH_like, NAD-dependent, lactate dehy 2e-32
pfam00056142 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, 2e-32
TIGR01763305 TIGR01763, MalateDH_bact, malate dehydrogenase, NA 5e-30
cd00300300 cd00300, LDH_like, L-lactate dehydrogenase-like en 6e-30
PTZ00117319 PTZ00117, PTZ00117, malate dehydrogenase; Provisio 4e-29
PTZ00082321 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi 3e-27
TIGR01771299 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase 3e-24
cd05291306 cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd 9e-24
cd05294309 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas 1e-22
cd05292308 cd05292, LDH_2, A subgroup of L-lactate dehydrogen 4e-17
cd05290307 cd05290, LDH_3, A subgroup of L-lactate dehydrogen 6e-16
PRK00066315 PRK00066, ldh, L-lactate dehydrogenase; Reviewed 6e-15
cd05293312 cd05293, LDH_1, A subgroup of L-lactate dehydrogen 1e-14
TIGR01759323 TIGR01759, MalateDH-SF1, malate dehydrogenase 1e-13
PLN02602350 PLN02602, PLN02602, lactate dehydrogenase 2e-13
cd00704323 cd00704, MDH, Malate dehydrogenase 2e-13
TIGR01756313 TIGR01756, LDH_protist, lactate dehydrogenase 2e-11
cd01336325 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an 2e-09
TIGR01758324 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD- 7e-09
PLN00135309 PLN00135, PLN00135, malate dehydrogenase 1e-07
cd01338322 cd01338, MDH_choloroplast_like, Chloroplast-like m 2e-07
PRK05442326 PRK05442, PRK05442, malate dehydrogenase; Provisio 2e-06
>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase Back     alignment and domain information 
 Score =  523 bits (1350), Expect = 0.0
 Identities = 198/259 (76%), Positives = 218/259 (84%), Gaps = 1/259 (0%)

Query: 12  VDSRA-VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAK 70
           +++ A VRGFLG  QL DAL G D+VIIPAGVPRKPGMTRDDLFNINAGIVKTLCE +AK
Sbjct: 65  INTPAQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAK 124

Query: 71  CCPKAIVNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR 130
            CP A+VN+ISNPVNSTVPIAAEV KK G YDPK+L GVT LDVVRANTFVAE  GLDP 
Sbjct: 125 HCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKGLDPA 184

Query: 131 EVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLS 190
           +VDVPVVGGHAG+TILPLLSQ  P  S T  EI+ LT RIQNGGTEVVEAK GAGSATLS
Sbjct: 185 DVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLS 244

Query: 191 MAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNE 250
           MAYAAA+FADACLRGL G+A V+EC+YV S VTELPFFASKVRLGR G+EE+  LGPL+E
Sbjct: 245 MAYAAARFADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLGLGPLSE 304

Query: 251 YERAGLEKAKKELAGSIQK 269
           YE+ GLE  K EL  SI+K
Sbjct: 305 YEQKGLEALKPELKASIEK 323

Length = 323
>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases Back     alignment and domain information
>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent Back     alignment and domain information
>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain Back     alignment and domain information
>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins Back     alignment and domain information
>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family Back     alignment and domain information
>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain Back     alignment and domain information
>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent Back     alignment and domain information
>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes Back     alignment and domain information
>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase Back     alignment and domain information
>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases Back     alignment and domain information
>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity Back     alignment and domain information
>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase Back     alignment and domain information
>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase Back     alignment and domain information
>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase Back     alignment and domain information
>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase Back     alignment and domain information
>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases Back     alignment and domain information
>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent Back     alignment and domain information
>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase Back     alignment and domain information
>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases Back     alignment and domain information
>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 276
TIGR01772312 MDH_euk_gproteo malate dehydrogenase, NAD-dependen 100.0
cd01337310 MDH_glyoxysomal_mitochondrial Glyoxysomal and mito 100.0
COG0039313 Mdh Malate/lactate dehydrogenases [Energy producti 100.0
PLN00135309 malate dehydrogenase 100.0
PLN00106323 malate dehydrogenase 100.0
PRK05086312 malate dehydrogenase; Provisional 100.0
TIGR01759323 MalateDH-SF1 malate dehydrogenase. This model repr 100.0
TIGR01756313 LDH_protist lactate dehydrogenase. This model repr 100.0
cd05290307 LDH_3 A subgroup of L-lactate dehydrogenases. L-la 100.0
TIGR01771299 L-LDH-NAD L-lactate dehydrogenase. This model repr 100.0
PTZ00325321 malate dehydrogenase; Provisional 100.0
PRK05442326 malate dehydrogenase; Provisional 100.0
TIGR01757387 Malate-DH_plant malate dehydrogenase, NADP-depende 100.0
cd00704323 MDH Malate dehydrogenase. Malate dehydrogenase (MD 100.0
cd05293312 LDH_1 A subgroup of L-lactate dehydrogenases. L-la 100.0
PLN00112444 malate dehydrogenase (NADP); Provisional 100.0
KOG1495332 consensus Lactate dehydrogenase [Energy production 100.0
PLN02602350 lactate dehydrogenase 100.0
cd05291306 HicDH_like L-2-hydroxyisocapronate dehydrogenases 100.0
PRK00066315 ldh L-lactate dehydrogenase; Reviewed 100.0
cd00300300 LDH_like L-lactate dehydrogenase-like enzymes. Mem 100.0
TIGR01758324 MDH_euk_cyt malate dehydrogenase, NAD-dependent. T 100.0
cd01338322 MDH_choloroplast_like Chloroplast-like malate dehy 100.0
TIGR01763305 MalateDH_bact malate dehydrogenase, NAD-dependent. 100.0
PTZ00117319 malate dehydrogenase; Provisional 100.0
cd05295452 MDH_like Malate dehydrogenase-like. These MDH-like 100.0
cd01336325 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli 100.0
KOG1494345 consensus NAD-dependent malate dehydrogenase [Ener 100.0
PTZ00082321 L-lactate dehydrogenase; Provisional 100.0
cd05292308 LDH_2 A subgroup of L-lactate dehydrogenases. L-la 100.0
cd05294309 LDH-like_MDH_nadp A lactate dehydrogenases-like st 100.0
cd01339300 LDH-like_MDH L-lactate dehydrogenase-like malate d 100.0
PRK06223307 malate dehydrogenase; Reviewed 100.0
KOG1496332 consensus Malate dehydrogenase [Energy production 100.0
cd00650263 LDH_MDH_like NAD-dependent, lactate dehydrogenase- 100.0
PF02866174 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta 100.0
cd05197425 GH4_glycoside_hydrolases Glycoside Hydrases Family 99.94
cd05296419 GH4_P_beta_glucosidase Glycoside Hydrolases Family 99.94
PRK15076431 alpha-galactosidase; Provisional 99.92
PF00056141 Ldh_1_N: lactate/malate dehydrogenase, NAD binding 99.91
cd05298437 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; 99.9
cd05297423 GH4_alpha_glucosidase_galactosidase Glycoside Hydr 99.88
COG1486442 CelF Alpha-galactosidases/6-phospho-beta-glucosida 99.82
PF02056183 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP 99.51
PF11975232 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-term 96.53
COG1004414 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en 95.01
PLN02353 473 probable UDP-glucose 6-dehydrogenase 89.89
PRK08293287 3-hydroxybutyryl-CoA dehydrogenase; Validated 89.78
PF03721185 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen 87.63
PRK05808282 3-hydroxybutyryl-CoA dehydrogenase; Validated 87.22
COG1250307 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo 86.21
PRK07066321 3-hydroxybutyryl-CoA dehydrogenase; Validated 86.03
PRK06035291 3-hydroxyacyl-CoA dehydrogenase; Validated 85.19
TIGR01915219 npdG NADPH-dependent F420 reductase. This model re 84.27
PF01210157 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate 83.08
COG0240329 GpsA Glycerol-3-phosphate dehydrogenase [Energy pr 81.68
PF02737180 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind 80.55
PRK08269314 3-hydroxybutyryl-CoA dehydrogenase; Validated 80.05
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent Back     alignment and domain information 
Probab=100.00  E-value=2.4e-65  Score=465.69  Aligned_cols=269  Identities=56%  Similarity=0.900  Sum_probs=244.9

Q ss_pred             cccccccCCcccccceec-C--CCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEec
Q 023853            5 LAQNKFDVDSRAVRGFLG-Q--QQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLIS   81 (276)
Q Consensus         5 ~~~~~~d~~~~~~~~i~~-~--~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvt   81 (276)
                      .+|+++|...+  ..+.. +  +|+.++++|||+||+|+|.|++||++|++++..|++|++++++.|++++|++++|++|
T Consensus        39 ~a~DL~~~~~~--~~i~~~~~~~~~~~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs  116 (312)
T TIGR01772        39 VAADLSHIPTA--ASVKGFSGEEGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT  116 (312)
T ss_pred             EEchhhcCCcC--ceEEEecCCCchHHHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec
Confidence            57899996632  24554 2  2344599999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHHHHcCCCCCCCEEEEeechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCCCCChh
Q 023853           82 NPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPT  161 (276)
Q Consensus        82 NP~d~~~~v~t~~~~~~~~~~~~rviG~t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~~~~~~  161 (276)
                      ||+|.|++++||++++.+|||++||||+|.|||+|||++||+++|+++++|++|||||||+++++|+||+++....++++
T Consensus       117 NPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~  196 (312)
T TIGR01772       117 NPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELKGKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTED  196 (312)
T ss_pred             CchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHhCCCHHHeEEEEEEecCCCccccccccccccCCCCHH
Confidence            99999999999999999999999999997799999999999999999999999999999866999999999864446666


Q ss_pred             HHHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEeeeecCCC-CCccEEEEeEEEcCCceE
Q 023853          162 EIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTV-TELPFFASKVRLGRAGIE  240 (276)
Q Consensus       162 ~~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s~~~~~y-~~~~~~s~Pv~ig~~Gv~  240 (276)
                      ++++|.++|+++|++|++.|.|||+|+||+|+++++++++|++++.|++.++|+++++|+| .+++|||+||+||++|++
T Consensus       197 ~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~~~d~~~v~~~s~~~g~yg~~~v~~s~P~~ig~~Gv~  276 (312)
T TIGR01772       197 QLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRGLKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVE  276 (312)
T ss_pred             HHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHhhCCCccEEEEEEEccCCCcCceEEEEEEEEcCCeeE
Confidence            7899999999999999998668899999999999999999998655788999988889888 478999999999999999


Q ss_pred             EEccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023853          241 EIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR  275 (276)
Q Consensus       241 ~i~~~~~L~~~E~~~l~~sa~~i~~~~~~~~~~~~  275 (276)
                      +++++++|+++|+++|++|++.|++.++++++|+.
T Consensus       277 ~i~~~~~L~~~E~~~l~~S~~~i~~~~~~g~~~~~  311 (312)
T TIGR01772       277 KRLGIGKLSSFEEKMLNGALPELKKNIKKGEEFVA  311 (312)
T ss_pred             EEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99987579999999999999999999999999975

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases Back     alignment and domain information
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN00135 malate dehydrogenase Back     alignment and domain information
>PLN00106 malate dehydrogenase Back     alignment and domain information
>PRK05086 malate dehydrogenase; Provisional Back     alignment and domain information
>TIGR01759 MalateDH-SF1 malate dehydrogenase Back     alignment and domain information
>TIGR01756 LDH_protist lactate dehydrogenase Back     alignment and domain information
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase Back     alignment and domain information
>PTZ00325 malate dehydrogenase; Provisional Back     alignment and domain information
>PRK05442 malate dehydrogenase; Provisional Back     alignment and domain information
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent Back     alignment and domain information
>cd00704 MDH Malate dehydrogenase Back     alignment and domain information
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>PLN00112 malate dehydrogenase (NADP); Provisional Back     alignment and domain information
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PLN02602 lactate dehydrogenase Back     alignment and domain information
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases Back     alignment and domain information
>PRK00066 ldh L-lactate dehydrogenase; Reviewed Back     alignment and domain information
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes Back     alignment and domain information
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent Back     alignment and domain information
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases Back     alignment and domain information
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent Back     alignment and domain information
>PTZ00117 malate dehydrogenase; Provisional Back     alignment and domain information
>cd05295 MDH_like Malate dehydrogenase-like Back     alignment and domain information
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases Back     alignment and domain information
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PTZ00082 L-lactate dehydrogenase; Provisional Back     alignment and domain information
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity Back     alignment and domain information
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins Back     alignment and domain information
>PRK06223 malate dehydrogenase; Reviewed Back     alignment and domain information
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family Back     alignment and domain information
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] Back     alignment and domain information
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 Back     alignment and domain information
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase Back     alignment and domain information
>PRK15076 alpha-galactosidase; Provisional Back     alignment and domain information
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] Back     alignment and domain information
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases Back     alignment and domain information
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases Back     alignment and domain information
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases Back     alignment and domain information
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02353 probable UDP-glucose 6-dehydrogenase Back     alignment and domain information
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated Back     alignment and domain information
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] Back     alignment and domain information
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated Back     alignment and domain information
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] Back     alignment and domain information
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated Back     alignment and domain information
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated Back     alignment and domain information
>TIGR01915 npdG NADPH-dependent F420 reductase Back     alignment and domain information
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate Back     alignment and domain information
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 Back     alignment and domain information
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
1sev_A362 Mature And Translocatable Forms Of Glyoxysomal Mala 1e-136
1smk_A326 Mature And Translocatable Forms Of Glyoxysomal Mala 1e-136
1mld_A314 Refined Structure Of Mitochondrial Malate Dehydroge 5e-81
2dfd_A342 Crystal Structure Of Human Malate Dehydrogenase Typ 7e-81
2pwz_A312 Crystal Structure Of The Apo Form Of E.Coli Malate 1e-75
1emd_A312 Crystal Structure Of A Ternary Complex Of Escherich 2e-75
1ib6_A312 Crystal Structure Of R153c E. Coli Malate Dehydroge 3e-74
4e0b_A313 2.17 Angstrom Resolution Crystal Structure Of Malat 3e-72
1guz_A310 Structural Basis For Thermophilic Protein Stability 1e-24
1gv1_A310 Structural Basis For Thermophilic Protein Stability 1e-24
3tl2_A315 Crystal Structure Of Bacillus Anthracis Str. Ames M 2e-21
3p7m_A321 Structure Of Putative Lactate Dehydrogenase From Fr 1e-20
1gv0_A310 Structural Basis For Thermophilic Protein Stability 7e-20
1uxi_A309 Large Improvement In The Thermal Stability Of A Tet 8e-20
1uxh_A309 Large Improvement In The Thermal Stability Of A Tet 1e-19
1guy_A309 Structural Basis For Thermophilic Protein Stability 2e-19
1ur5_A309 Stabilization Of A Tetrameric Malate Dehydrogenase 2e-19
2hjr_A328 Crystal Structure Of Cryptosporidium Parvum Malate 4e-19
3gvh_A324 Crystal Structure Of LactateMALATE DEHYDROGENASE FR 8e-19
1a5z_A319 Lactate Dehydrogenase From Thermotoga Maritima (tml 5e-17
3czm_A326 T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex 1e-15
1sov_A328 Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap 2e-15
1t24_A322 Plasmodium Falciparum Lactate Dehydrogenase Complex 2e-14
2d4a_A308 Structure Of The Malate Dehydrogenase From Aeropyru 2e-14
1u4o_A321 Plasmodium Falciparum Lactate Dehydrogenase Complex 2e-14
1ceq_A316 Chloroquine Binds In The Cofactor Binding Site Of P 2e-14
1xiv_A323 Plasmodium Falciparum Lactate Dehydrogenase Complex 2e-14
3nep_X314 1.55a Resolution Structure Of Malate Dehydrogenase 4e-14
2a92_A321 Crystal Structure Of Lactate Dehydrogenase From Pla 3e-13
1cet_A316 Chloroquine Binds In The Cofactor Binding Site Of P 3e-13
1t2e_A322 Plasmodium Falciparum Lactate Dehydrogenase S245a, 3e-13
2fm3_A321 Crystal Structure Of The Lactate Dehydrogenase From 5e-13
2ewd_A317 Crystal Structure Of The Lactate Dehydrogenase From 5e-13
1pze_A331 T.gondii Ldh1 Apo Form Length = 331 9e-13
3om9_A329 T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex 9e-13
1pzg_A331 T.Gondii Ldh1 Complexed With Apad And Sulfate At 1. 1e-12
1oc4_A322 Lactate Dehydrogenase From Plasmodium Berghei Lengt 2e-12
2zqy_A326 T-State Structure Of Allosteric L-Lactate Dehydroge 4e-12
3vku_A326 Penta Mutant Of Lactobacillus Casei Lactate Dehydro 5e-12
1llc_A325 Structure Determination Of The Allosteric L-Lactate 6e-12
1hyg_A313 Crystal Structure Of Mj0490 Gene Product, The Famil 2e-11
1y6j_A318 L-Lactate Dehydrogenase From Clostridium Thermocell 3e-11
1hlp_A303 Structural Features Stabilizing Halophilic Malate D 5e-11
2hlp_A303 Crystal Structure Of The E267r Mutant Of A Halophil 5e-11
2j5k_A304 2.0 A Resolution Structure Of The Wild Type Malate 5e-11
3d0o_A317 Crystal Structure Of Lactate Dehydrogenase From Sta 4e-10
3h3j_A317 Crystal Structure Of Lactate Dehydrogenase Mutant ( 7e-10
2x0r_A304 R207s,R292s Mutant Of Malate Dehydrogenase From The 7e-10
1o6z_A303 1.95 A Resolution Structure Of (r207s,r292s) Mutant 7e-10
4a73_A310 Single Point Mutant Of Thermus Thermophilus Lactate 1e-09
2e37_A310 Structure Of Tt0471 Protein From Thermus Thermophil 1e-09
2v6m_A310 Crystal Structure Of Lactate Dehydrogenase From The 2e-09
3pqd_A326 Crystal Structure Of L-Lactate Dehydrogenase From B 3e-09
2ldx_A331 Characterization Of The Antigenic Sites On The Refi 3e-09
2v65_A331 Apo Ldh From The Psychrophile C. Gunnari Length = 3 5e-09
2xxb_A310 Penta-Mutant Of Thermus Thermophilus Lactate Dehydr 6e-09
1i10_A331 Human Muscle L-Lactate Dehydrogenase M Chain, Terna 7e-09
4ajp_A337 Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl- 7e-09
1v6a_A332 Crystal Structure Of L-Lactate Dehydrogenase From C 7e-09
3fi9_A343 Crystal Structure Of Malate Dehydrogenase From Porp 8e-09
4aj1_A331 Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be 8e-09
4aj4_A332 Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be 8e-09
3pqe_A326 Crystal Structure Of L-Lactate Dehydrogenase From B 1e-08
2x0i_A294 2.9 A Resolution Structure Of Malate Dehydrogenase 1e-08
1lld_A319 Molecular Basis Of Allosteric Activation Of Bacteri 2e-08
1ez4_A318 Crystal Structure Of Non-Allosteric L-Lactate Dehyd 2e-08
9ldt_A332 Design And Synthesis Of New Enzymes Based On The La 3e-08
1ldb_A317 Structure Determination And Refinement Of Bacillus 4e-08
1ldn_A316 Structure Of A Ternary Complex Of An Allosteric Lac 5e-08
3h3f_A331 Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi 9e-08
2v6b_A304 Crystal Structure Of Lactate Dehydrogenase From Dei 1e-07
4h7p_A345 Crystal Structure Of A Putative Cytosolic Malate De 9e-07
4mdh_A334 Refined Crystal Structure Of Cytoplasmic Malate Deh 7e-06
5mdh_A333 Crystal Structure Of Ternary Complex Of Porcine Cyt 7e-06
1t2f_A333 Human B Lactate Dehydrogenase Complexed With Nad+ A 9e-06
1i0z_A333 Human Heart L-Lactate Dehydrogenase H Chain, Ternar 9e-06
5ldh_A334 Structure Of The Active Ternary Complex Of Pig Hear 4e-05
6ldh_A330 Refined Crystal Structure Of Dogfish M4 Apo-Lactate 2e-04
1ldm_A329 Refined Crystal Structure Of Dogfish M4 Apo-Lactate 2e-04
1hyh_A309 Crystal Structure Of L-2-hydroxyisocaproate Dehydro 9e-04
1civ_A385 Chloroplast Nadp-Dependent Malate Dehydrogenase Fro 9e-04
>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362 Back     alignment and structure 
Iteration: 1

 Score =  481 bits (1239), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/259 (90%), Positives = 245/259 (94%)
Query: 17  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 76
           VRGFLGQQQLE ALTGMD++I+PAGVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AI
Sbjct: 97  VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 156
Query: 77  VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 136
           VNLISNPVNSTVPIAAEVFKK GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPV
Sbjct: 157 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 216
Query: 137 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 196
           VGGHAGVTILPLLSQVKP  S T  EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA 
Sbjct: 217 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAV 276
Query: 197 KFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 256
           KFADACLRGLRGDAGVIECA+V+S VTELPFFASKVRLGR GIEE+YSLGPLNEYER GL
Sbjct: 277 KFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGL 336
Query: 257 EKAKKELAGSIQKGVSFVR 275
           EKAKKELAGSI+KGVSF+R
Sbjct: 337 EKAKKELAGSIEKGVSFIR 355
>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326 Back     alignment and structure
>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314 Back     alignment and structure
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342 Back     alignment and structure
>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312 Back     alignment and structure
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312 Back     alignment and structure
>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312 Back     alignment and structure
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313 Back     alignment and structure
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 Back     alignment and structure
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 Back     alignment and structure
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315 Back     alignment and structure
>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321 Back     alignment and structure
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310 Back     alignment and structure
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309 Back     alignment and structure
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309 Back     alignment and structure
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309 Back     alignment and structure
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309 Back     alignment and structure
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328 Back     alignment and structure
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324 Back     alignment and structure
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319 Back     alignment and structure
>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326 Back     alignment and structure
>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328 Back     alignment and structure
>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 322 Back     alignment and structure
>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308 Back     alignment and structure
>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2,6- Naphthalenedicarboxylic Acid Length = 321 Back     alignment and structure
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase Length = 316 Back     alignment and structure
>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2-({4- Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane- 1,1,2-Triol Length = 323 Back     alignment and structure
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314 Back     alignment and structure
>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321 Back     alignment and structure
>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase. Length = 316 Back     alignment and structure
>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p Mutant Complexed With Nadh And Oxamate Length = 322 Back     alignment and structure
>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor (B- Nicotinamide Adenine Dinucleotide) Length = 321 Back     alignment and structure
>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor Analog (3-Acetylpyridine Adenine Dinucleotide). Length = 317 Back     alignment and structure
>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331 Back     alignment and structure
>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329 Back     alignment and structure
>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331 Back     alignment and structure
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei Length = 322 Back     alignment and structure
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326 Back     alignment and structure
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326 Back     alignment and structure
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325 Back     alignment and structure
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313 Back     alignment and structure
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318 Back     alignment and structure
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303 Back     alignment and structure
>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303 Back     alignment and structure
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304 Back     alignment and structure
>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Staphylococcus Aureus Length = 317 Back     alignment and structure
>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r) Fro Staphylococcus Aureus Complexed With Nad And Pyruvate Length = 317 Back     alignment and structure
>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304 Back     alignment and structure
>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303 Back     alignment and structure
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate Dehydrogenase Length = 310 Back     alignment and structure
>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus Length = 310 Back     alignment and structure
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus Thermophilus Hb8 (Apo Form) Length = 310 Back     alignment and structure
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326 Back     alignment and structure
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331 Back     alignment and structure
>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331 Back     alignment and structure
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate Dehydrogenase, Complex With Amp Length = 310 Back     alignment and structure
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331 Back     alignment and structure
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337 Back     alignment and structure
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332 Back     alignment and structure
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343 Back     alignment and structure
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331 Back     alignment and structure
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332 Back     alignment and structure
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326 Back     alignment and structure
>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294 Back     alignment and structure
>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial L-Lactate Dehydrogenase Length = 319 Back     alignment and structure
>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate Dehydrogenase From Lactobacillus Pentosus At 2.3 Angstrom Resolution Length = 318 Back     alignment and structure
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332 Back     alignment and structure
>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317 Back     alignment and structure
>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316 Back     alignment and structure
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331 Back     alignment and structure
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Deinococcus Radiodurans (Apo Form) Length = 304 Back     alignment and structure
>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345 Back     alignment and structure
>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate Dehydrogenase At 2.5-Angstroms Resolution Length = 334 Back     alignment and structure
>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And Tnad At 2.4 Angstroms Resolution Length = 333 Back     alignment and structure
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 333 Back     alignment and structure
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary Complex With Nadh And Oxamate Length = 333 Back     alignment and structure
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334 Back     alignment and structure
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330 Back     alignment and structure
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329 Back     alignment and structure
>pdb|1HYH|A Chain A, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase From Lactobacillus Confusus At 2.2 Angstroms Resolution-an Example Of Strong Asymmetry Between Subunits Length = 309 Back     alignment and structure
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query276
1smk_A326 Malate dehydrogenase, glyoxysomal; tricarboxylic c 1e-147
1mld_A314 Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D 1e-143
3hhp_A312 Malate dehydrogenase; MDH, citric acid cycle, TCA 1e-141
3fi9_A343 Malate dehydrogenase; structural genomics, oxidore 2e-45
2d4a_B308 Malate dehydrogenase; archaea, hyperthermophIle, o 5e-40
1guz_A310 Malate dehydrogenase; oxidoreductase, tricarboxyli 7e-39
3nep_X314 Malate dehydrogenase; halophIle, molecular adpatat 7e-39
1ur5_A309 Malate dehydrogenase; oxidoreductase, tricarboxyli 1e-38
2ewd_A317 Lactate dehydrogenase,; protein-substrate_cofactor 2e-38
3tl2_A315 Malate dehydrogenase; center for structural genomi 2e-38
1o6z_A303 MDH, malate dehydrogenase; halophilic, ION-binding 2e-38
1hye_A313 L-lactate/malate dehydrogenase; nucleotide binding 2e-38
2hjr_A328 Malate dehydrogenase; malaria, structural genomics 2e-38
3gvi_A324 Malate dehydrogenase; NAD, oxidoreductase, tricarb 1e-37
3p7m_A321 Malate dehydrogenase; putative dehydrogenase, enzy 2e-37
1t2d_A322 LDH-P, L-lactate dehydrogenase; ternary complex, o 2e-36
1ldn_A316 L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA 2e-36
1pzg_A331 LDH, lactate dehydrogenase; apicomplexa, APAD, tet 3e-36
2zqz_A326 L-LDH, L-lactate dehydrogenase; oxidoreductase, ro 4e-36
1ez4_A318 Lactate dehydrogenase; rossmann fold, oxidoreducta 5e-36
3pqe_A326 L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas 6e-36
1a5z_A319 L-lactate dehydrogenase; oxidoreductase, glycolysi 9e-36
3d0o_A317 L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly 2e-35
4aj2_A331 L-lactate dehydrogenase A chain; oxidoreductase-in 4e-35
2xxj_A310 L-LDH, L-lactate dehydrogenase; oxidoreductase, hy 8e-35
1lld_A319 L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N 9e-35
1y6j_A318 L-lactate dehydrogenase; southeast collaboratory f 2e-34
5mdh_A333 Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH 8e-34
2v6b_A304 L-LDH, L-lactate dehydrogenase; oxidoreductase, ra 1e-32
1y7t_A327 Malate dehydrogenase; NAD-dependent-MDH-NADPH comp 1e-32
7mdh_A375 Protein (malate dehydrogenase); chloroplastic mala 8e-32
1oju_A294 MDH, malate dehydrogenase; hyperthermophilic, oxid 9e-32
1b8p_A329 Protein (malate dehydrogenase); oxidoreductase; 1. 2e-31
2i6t_A303 Ubiquitin-conjugating enzyme E2-like isoform A; L- 4e-31
1hyh_A309 L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 9e-31
3ldh_A330 Lactate dehydrogenase; oxidoreductase, CHOH donor, 6e-30
3fef_A 450 Putative glucosidase LPLD; gulosidase, structural 2e-05
1obb_A 480 Maltase, alpha-glucosidase; glycosidase, sulfinic 6e-05
1u8x_X 472 Maltose-6'-phosphate glucosidase; structural genom 2e-04
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326 Back     alignment and structure
 Score =  413 bits (1065), Expect = e-147
 Identities = 235/260 (90%), Positives = 245/260 (94%)

Query: 17  VRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAI 76
           VRGFLGQQQLE ALTGMD++I+PAGVPRKPGMTRDDLF INAGIVKTLCEGIAKCCP+AI
Sbjct: 61  VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120

Query: 77  VNLISNPVNSTVPIAAEVFKKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPV 136
           VNLISNPVNSTVPIAAEVFKK GTYDPKRLLGVTMLDVVRANTFVAEVLGLDPR+VDVPV
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180

Query: 137 VGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAA 196
           VGGHAGVTILPLLSQVKP  S T  EI YLTDRIQNGGTEVVEAK GAGSATLSMAYAA 
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAV 240

Query: 197 KFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGL 256
           KFADACLRGLRGDAGVIECA+V+S VTELPFFASKVRLGR GIEE+YSLGPLNEYER GL
Sbjct: 241 KFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGL 300

Query: 257 EKAKKELAGSIQKGVSFVRK 276
           EKAKKELAGSI+KGVSF+R 
Sbjct: 301 EKAKKELAGSIEKGVSFIRS 320
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314 Back     alignment and structure
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312 Back     alignment and structure
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343 Back     alignment and structure
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308 Back     alignment and structure
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310 Back     alignment and structure
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314 Back     alignment and structure
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309 Back     alignment and structure
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317 Back     alignment and structure
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315 Back     alignment and structure
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303 Back     alignment and structure
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313 Back     alignment and structure
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328 Back     alignment and structure
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324 Back     alignment and structure
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321 Back     alignment and structure
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322 Back     alignment and structure
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316 Back     alignment and structure
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331 Back     alignment and structure
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326 Back     alignment and structure
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318 Back     alignment and structure
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326 Back     alignment and structure
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319 Back     alignment and structure
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317 Back     alignment and structure
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331 Back     alignment and structure
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310 Back     alignment and structure
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319 Back     alignment and structure
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318 Back     alignment and structure
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333 Back     alignment and structure
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304 Back     alignment and structure
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327 Back     alignment and structure
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375 Back     alignment and structure
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294 Back     alignment and structure
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329 Back     alignment and structure
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303 Back     alignment and structure
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309 Back     alignment and structure
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330 Back     alignment and structure
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450 Back     alignment and structure
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 480 Back     alignment and structure
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Length = 472 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
3hhp_A312 Malate dehydrogenase; MDH, citric acid cycle, TCA 100.0
4aj2_A331 L-lactate dehydrogenase A chain; oxidoreductase-in 100.0
1mld_A314 Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D 100.0
3p7m_A321 Malate dehydrogenase; putative dehydrogenase, enzy 100.0
3nep_X314 Malate dehydrogenase; halophIle, molecular adpatat 100.0
3tl2_A315 Malate dehydrogenase; center for structural genomi 100.0
3vku_A326 L-LDH, L-lactate dehydrogenase; rossmann fold, NAD 100.0
1oju_A294 MDH, malate dehydrogenase; hyperthermophilic, oxid 100.0
3gvi_A324 Malate dehydrogenase; NAD, oxidoreductase, tricarb 100.0
3pqe_A326 L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas 100.0
2x0j_A294 Malate dehydrogenase; oxidoreductase, hyperthermop 100.0
7mdh_A375 Protein (malate dehydrogenase); chloroplastic mala 100.0
1smk_A326 Malate dehydrogenase, glyoxysomal; tricarboxylic c 100.0
3fi9_A343 Malate dehydrogenase; structural genomics, oxidore 100.0
5mdh_A333 Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH 100.0
2d4a_B308 Malate dehydrogenase; archaea, hyperthermophIle, o 100.0
1ez4_A318 Lactate dehydrogenase; rossmann fold, oxidoreducta 100.0
2zqz_A326 L-LDH, L-lactate dehydrogenase; oxidoreductase, ro 100.0
4h7p_A345 Malate dehydrogenase; ssgcid, structural G seattle 100.0
3ldh_A330 Lactate dehydrogenase; oxidoreductase, CHOH donor, 100.0
2xxj_A310 L-LDH, L-lactate dehydrogenase; oxidoreductase, hy 100.0
3d0o_A317 L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly 100.0
1y6j_A318 L-lactate dehydrogenase; southeast collaboratory f 100.0
1ur5_A309 Malate dehydrogenase; oxidoreductase, tricarboxyli 100.0
1o6z_A303 MDH, malate dehydrogenase; halophilic, ION-binding 100.0
2i6t_A303 Ubiquitin-conjugating enzyme E2-like isoform A; L- 100.0
1hye_A313 L-lactate/malate dehydrogenase; nucleotide binding 100.0
1ldn_A316 L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA 100.0
1t2d_A322 LDH-P, L-lactate dehydrogenase; ternary complex, o 100.0
2hjr_A328 Malate dehydrogenase; malaria, structural genomics 100.0
1guz_A310 Malate dehydrogenase; oxidoreductase, tricarboxyli 100.0
1pzg_A331 LDH, lactate dehydrogenase; apicomplexa, APAD, tet 100.0
1b8p_A329 Protein (malate dehydrogenase); oxidoreductase; 1. 100.0
2v6b_A304 L-LDH, L-lactate dehydrogenase; oxidoreductase, ra 100.0
1a5z_A319 L-lactate dehydrogenase; oxidoreductase, glycolysi 100.0
1hyh_A309 L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 100.0
2ewd_A317 Lactate dehydrogenase,; protein-substrate_cofactor 100.0
1y7t_A327 Malate dehydrogenase; NAD-dependent-MDH-NADPH comp 100.0
1up7_A417 6-phospho-beta-glucosidase; hydrolase, family4 hyd 100.0
1s6y_A450 6-phospho-beta-glucosidase; hydrolase, structural 100.0
1lld_A319 L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N 100.0
1u8x_X472 Maltose-6'-phosphate glucosidase; structural genom 100.0
3fef_A450 Putative glucosidase LPLD; gulosidase, structural 99.95
1obb_A480 Maltase, alpha-glucosidase; glycosidase, sulfinic 99.93
3u95_A 477 Glycoside hydrolase, family 4; hydrolysis, cytosol 99.9
2o3j_A 481 UDP-glucose 6-dehydrogenase; structural genomics, 87.49
4e12_A283 Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 87.06
3ado_A319 Lambda-crystallin; L-gulonate 3-dehydrogenase, str 86.17
3ehe_A313 UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, 85.75
1dlj_A402 UDP-glucose dehydrogenase; rossmann fold, ternary 85.47
2dpo_A319 L-gulonate 3-dehydrogenase; structural genomics, N 84.3
1f0y_A302 HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive 83.33
3gg2_A 450 Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd 82.85
3k6j_A460 Protein F01G10.3, confirmed by transcript evidenc; 81.57
3m2p_A311 UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J 80.76
1mv8_A 436 GMD, GDP-mannose 6-dehydrogenase; rossman fold, do 80.09
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Back     alignment and structure
Probab=100.00  E-value=1.1e-62  Score=448.22  Aligned_cols=269  Identities=53%  Similarity=0.829  Sum_probs=237.9

Q ss_pred             cccccccCCcc-cccceecCCCHHhhcCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecCC
Q 023853            5 LAQNKFDVDSR-AVRGFLGQQQLEDALTGMDIVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEGIAKCCPKAIVNLISNP   83 (276)
Q Consensus         5 ~~~~~~d~~~~-~~~~i~~~~d~~~al~daDiVii~ag~~~k~g~~r~~~~~~N~~i~~~i~~~i~~~~p~~~vivvtNP   83 (276)
                      .+|+++|+..+ .++.+..+++++ +++|||+||+++|.||+|||+|+|++.+|++|++++++.|.+++|+++++++|||
T Consensus        42 ~a~Dl~~~~~~~~v~~~~~~~~~~-~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNP  120 (312)
T 3hhp_A           42 VAVDLSHIPTAVKIKGFSGEDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP  120 (312)
T ss_dssp             HHHHHHTSCSSEEEEEECSSCCHH-HHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSC
T ss_pred             HHHHhhCCCCCceEEEecCCCcHH-HhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCc
Confidence            47899997542 233222245675 8999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHcCCC-CCCCEEEEeechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCCCCChhH
Q 023853           84 VNSTVPIAAEVFKKVGTY-DPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTE  162 (276)
Q Consensus        84 ~d~~~~v~t~~~~~~~~~-~~~rviG~t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~~~~~~~  162 (276)
                      +|.+++++++ +++.+|+ |++||||+|.||++||+++||+++|+++++|+++|||||+|++++|+||++ ....+++++
T Consensus       121 vd~~t~~a~~-~~k~sg~~p~~rv~G~~~LD~~R~~~~la~~lgv~~~~v~~~V~G~Hsg~t~vp~~S~~-~g~~~~~~~  198 (312)
T 3hhp_A          121 VNTTVAIAAE-VLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQE  198 (312)
T ss_dssp             HHHHHHHHHH-HHHHTTCCCTTSEEECCHHHHHHHHHHHHHHHTCCGGGCCCCEEECSSGGGEEECGGGC-TTCCCCHHH
T ss_pred             chhHHHHHHH-HHHHcCCCCcceEEEEechhHHHHHHHHHHHhCcChhHcceeEEeccCCCceeeecccC-CCCCCCHHH
Confidence            9944444333 5677787 999999999999999999999999999999999999999768999999998 333578889


Q ss_pred             HHHHHHHHhcCccceeeccCCCCchhHHHHHHHHHHHHHHHhccCCCCCeeEeeeecCCCCCccEEEEeEEEcCCceEEE
Q 023853          163 IDYLTDRIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEI  242 (276)
Q Consensus       163 ~~~i~~~v~~~~~~ii~~k~gkg~~~~s~A~a~~~li~ai~~~~~~~~~~~~~s~~~~~y~~~~~~s~Pv~ig~~Gv~~i  242 (276)
                      |++|.++|+++|++|++.|.|+|+++||+|+++++++++|+.+++|++.++||++++|+...++|||+||++|++|++++
T Consensus       199 ~~~i~~~v~~~g~eIi~~k~g~gst~~s~a~a~~~~~~ai~~~l~~~~~v~~~s~~~g~g~~~v~~s~P~~~g~~Gv~~v  278 (312)
T 3hhp_A          199 VADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEER  278 (312)
T ss_dssp             HHHHHHHHHTHHHHHHHHTTTSCCCCHHHHHHHHHHHHHHHHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHhhhHHHHhhccCCCCchhHHHHHHHHHHHHHHHHcCCCCceEEEEEecCCCCcceEEEeEEEEeCCEEEEE
Confidence            99999999999999999876779999999999999999997766678889999988865345789999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q 023853          243 YSLGPLNEYERAGLEKAKKELAGSIQKGVSFVRK  276 (276)
Q Consensus       243 ~~~~~L~~~E~~~l~~sa~~i~~~~~~~~~~~~~  276 (276)
                      +++++|+++|+++|++|++.|+++++++++|+.+
T Consensus       279 ~~~~~L~~~E~~~l~~s~~~l~~~i~~g~~~~~~  312 (312)
T 3hhp_A          279 KSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK  312 (312)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9987899999999999999999999999999864
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Back     alignment and structure
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Back     alignment and structure
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Back     alignment and structure
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Back     alignment and structure
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Back     alignment and structure
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* Back     alignment and structure
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* Back     alignment and structure
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Back     alignment and structure
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Back     alignment and structure
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* Back     alignment and structure
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Back     alignment and structure
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Back     alignment and structure
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Back     alignment and structure
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Back     alignment and structure
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Back     alignment and structure
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Back     alignment and structure
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Back     alignment and structure
>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} Back     alignment and structure
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Back     alignment and structure
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Back     alignment and structure
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Back     alignment and structure
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Back     alignment and structure
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Back     alignment and structure
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Back     alignment and structure
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Back     alignment and structure
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Back     alignment and structure
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Back     alignment and structure
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Back     alignment and structure
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Back     alignment and structure
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Back     alignment and structure
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Back     alignment and structure
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Back     alignment and structure
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Back     alignment and structure
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Back     alignment and structure
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Back     alignment and structure
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Back     alignment and structure
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Back     alignment and structure
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A Back     alignment and structure
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Back     alignment and structure
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Back     alignment and structure
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Back     alignment and structure
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Back     alignment and structure
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Back     alignment and structure
>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* Back     alignment and structure
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} Back     alignment and structure
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* Back     alignment and structure
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* Back     alignment and structure
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 Back     alignment and structure
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* Back     alignment and structure
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Back     alignment and structure
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} Back     alignment and structure
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Back     alignment and structure
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Back     alignment and structure
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 276
d1mlda2169 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S 3e-50
d2cmda2167 d.162.1.1 (A:146-312) Malate dehydrogenase {Escher 1e-49
d1guza2163 d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro 3e-31
d1uxja2164 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro 5e-30
d1ldma2169 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi 4e-26
d5mdha2179 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S 5e-26
d1llda2170 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid 1e-24
d1mlda1144 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s 2e-24
d1ez4a2171 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto 3e-24
d1a5za2172 d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm 7e-24
d2ldxa2172 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse 1e-23
d1llca2172 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto 1e-23
d1ldna2168 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil 3e-23
d1hyea2168 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd 4e-23
d1o6za2161 d.162.1.1 (A:163-330) Malate dehydrogenase {Archae 5e-23
d1hyha2163 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy 5e-23
d1i0za2172 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human 1e-22
d1y6ja2169 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost 2e-22
d1t2da2165 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar 4e-21
d1pzga2174 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop 4e-21
d2cmda1145 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi 2e-20
d1y7ta2173 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu 2e-19
d1b8pa2171 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp 2e-19
d7mdha2188 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu 4e-19
d1y7ta1154 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th 1e-18
d1guza1142 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium 2e-18
d1llda1143 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac 3e-18
d1ojua1142 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon 6e-18
d1a5za1140 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto 3e-16
d7mdha1175 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum ( 9e-16
d1pzga1154 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas 1e-15
d5mdha1154 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s 2e-15
d1uxja1142 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex 3e-15
d1t2da1150 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p 4e-15
d1ez4a1146 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac 5e-15
d1y6ja1142 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi 8e-15
d2ldxa1159 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu 1e-14
d1o6za1142 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon 2e-14
d1ldna1148 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus 5e-14
d1i0za1160 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho 3e-13
d1ojua2152 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archa 4e-13
d1hyha1146 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro 5e-13
d1up7a1162 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther 1e-12
d1hyea1145 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge 2e-12
d1s6ya1169 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci 6e-12
d1u8xx1167 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase 6e-11
d1obba1171 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto 2e-09
>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  161 bits (407), Expect = 3e-50
 Identities = 84/167 (50%), Positives = 114/167 (68%)

Query: 109 VTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTD 168
           VT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI+PL+SQ  P       ++  LT 
Sbjct: 1   VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTG 60

Query: 169 RIQNGGTEVVEAKTGAGSATLSMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFF 228
           RIQ  GTEVV+AK GAGSATLSMAYA A+F  + +  + G  GV+EC++V S  T+ P+F
Sbjct: 61  RIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYF 120

Query: 229 ASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQKGVSFVR 275
           ++ + LG+ GIE+   +G ++ +E   + +A  EL  SI+KG  FV+
Sbjct: 121 STPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVK 167
>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167 Back     information, alignment and structure
>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163 Back     information, alignment and structure
>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164 Back     information, alignment and structure
>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169 Back     information, alignment and structure
>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179 Back     information, alignment and structure
>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170 Back     information, alignment and structure
>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144 Back     information, alignment and structure
>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171 Back     information, alignment and structure
>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172 Back     information, alignment and structure
>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172 Back     information, alignment and structure
>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172 Back     information, alignment and structure
>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168 Back     information, alignment and structure
>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168 Back     information, alignment and structure
>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161 Back     information, alignment and structure
>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163 Back     information, alignment and structure
>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172 Back     information, alignment and structure
>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169 Back     information, alignment and structure
>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165 Back     information, alignment and structure
>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174 Back     information, alignment and structure
>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145 Back     information, alignment and structure
>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173 Back     information, alignment and structure
>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171 Back     information, alignment and structure
>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188 Back     information, alignment and structure
>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154 Back     information, alignment and structure
>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142 Back     information, alignment and structure
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143 Back     information, alignment and structure
>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142 Back     information, alignment and structure
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140 Back     information, alignment and structure
>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175 Back     information, alignment and structure
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154 Back     information, alignment and structure
>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154 Back     information, alignment and structure
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142 Back     information, alignment and structure
>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150 Back     information, alignment and structure
>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146 Back     information, alignment and structure
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142 Back     information, alignment and structure
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159 Back     information, alignment and structure
>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142 Back     information, alignment and structure
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148 Back     information, alignment and structure
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160 Back     information, alignment and structure
>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 152 Back     information, alignment and structure
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146 Back     information, alignment and structure
>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162 Back     information, alignment and structure
>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145 Back     information, alignment and structure
>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169 Back     information, alignment and structure
>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167 Back     information, alignment and structure
>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query276
d1mlda2169 Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 100.0
d2cmda2167 Malate dehydrogenase {Escherichia coli [TaxId: 562 100.0
d1uxja2164 Malate dehydrogenase {Chloroflexus aurantiacus [Ta 100.0
d1guza2163 Malate dehydrogenase {Chlorobium vibrioforme [TaxI 100.0
d1ez4a2171 Lactate dehydrogenase {Lactobacillus pentosus [Tax 100.0
d1ojua2152 Lactate dehydrogenase {Archaeon Archaeoglobus fulg 100.0
d1llda2170 Lactate dehydrogenase {Bifidobacterium longum, str 100.0
d5mdha2179 Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 100.0
d7mdha2188 Malate dehydrogenase {Sorghum (Sorghum vulgare), c 100.0
d1y6ja2169 Lactate dehydrogenase {Clostridium thermocellum [T 100.0
d1a5za2172 Lactate dehydrogenase {Thermotoga maritima [TaxId: 100.0
d1pzga2174 Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 100.0
d1hyea2168 MJ0490, lactate/malate dehydrogenase {Archaeon Met 99.98
d1t2da2165 Lactate dehydrogenase {Malaria parasite (Plasmodiu 99.98
d1hyha2163 L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La 99.98
d1ldna2168 Lactate dehydrogenase {Bacillus stearothermophilus 99.97
d1o6za2161 Malate dehydrogenase {Archaeon Haloarcula marismor 99.97
d1i0za2172 Lactate dehydrogenase {Human (Homo sapiens), heart 99.97
d1llca2172 Lactate dehydrogenase {Lactobacillus casei [TaxId: 99.97
d1ldma2169 Lactate dehydrogenase {Dogfish (Squalus acanthias) 99.97
d2ldxa2172 Lactate dehydrogenase {Mouse (Mus musculus) [TaxId 99.97
d1y7ta2173 Malate dehydrogenase {Thermus thermophilus [TaxId: 99.96
d1b8pa2171 Malate dehydrogenase {Aquaspirillum arcticum [TaxI 99.96
d7mdha1175 Malate dehydrogenase {Sorghum (Sorghum vulgare), c 99.92
d1llda1143 Lactate dehydrogenase {Bifidobacterium longum, str 99.92
d1mlda1144 Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 99.92
d1o6za1142 Malate dehydrogenase {Archaeon Haloarcula marismor 99.92
d1ojua1142 Malate dehydrogenase {Archaeon Archaeoglobus fulgi 99.91
d2cmda1145 Malate dehydrogenase {Escherichia coli [TaxId: 562 99.91
d1a5za1140 Lactate dehydrogenase {Thermotoga maritima [TaxId: 99.91
d1y6ja1142 Lactate dehydrogenase {Clostridium thermocellum [T 99.9
d1y7ta1154 Malate dehydrogenase {Thermus thermophilus [TaxId: 99.9
d5mdha1154 Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 99.9
d1ldna1148 Lactate dehydrogenase {Bacillus stearothermophilus 99.9
d1hyha1146 L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La 99.89
d1hyea1145 MJ0490, lactate/malate dehydrogenase {Archaeon Met 99.89
d1ez4a1146 Lactate dehydrogenase {Lactobacillus pentosus [Tax 99.89
d1i0za1160 Lactate dehydrogenase {Human (Homo sapiens), heart 99.89
d1guza1142 Malate dehydrogenase {Chlorobium vibrioforme [TaxI 99.89
d1uxja1142 Malate dehydrogenase {Chloroflexus aurantiacus [Ta 99.88
d2ldxa1159 Lactate dehydrogenase {Mouse (Mus musculus) [TaxId 99.88
d1t2da1150 Lactate dehydrogenase {Malaria parasite (Plasmodiu 99.87
d1pzga1154 Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 99.85
d1s6ya1169 6-phospho-beta-glucosidase {Bacillus stearothermop 99.79
d1u8xx1167 Maltose-6'-phosphate glucosidase GlvA {Bacillus su 99.74
d1up7a1162 6-phospho-beta-glucosidase {Thermotoga maritima [T 99.71
d1obba1171 Alpha-glucosidase AglA {Thermotoga maritima [TaxId 99.62
d1vjta1193 Putative alpha-glucosidase TM0752 {Thermotoga mari 98.54
d1up7a2253 6-phospho-beta-glucosidase {Thermotoga maritima [T 98.18
d1s6ya2270 6-phospho-beta-glucosidase {Bacillus stearothermop 98.17
d1u8xx2276 Maltose-6'-phosphate glucosidase GlvA {Bacillus su 97.19
d1obba2308 Alpha-glucosidase AglA {Thermotoga maritima [TaxId 96.72
d1vjta2278 Putative alpha-glucosidase TM0752 {Thermotoga mari 96.4
d1mv8a2202 GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos 83.62
d1f0ya2192 Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum 80.07
>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4.9e-35  Score=242.00  Aligned_cols=166  Identities=50%  Similarity=0.834  Sum_probs=147.0

Q ss_pred             eechHHHHHHHHHHHhCCCCCCceeeEEeecCCCeeeecccCCCCCCCCChhHHHHHHHHHhcCccceeeccCCCCchhH
Q 023853          110 TMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKTGAGSATL  189 (276)
Q Consensus       110 t~lds~R~~~~la~~l~v~~~~v~~~ViG~hgg~~~vp~~s~~~~~~~~~~~~~~~i~~~v~~~~~~ii~~k~gkg~~~~  189 (276)
                      |.|||+|||++||++||++|++|+++|+|+|||++++|+||++.+...++.++++++.++++++++++++.|.+++++.+
T Consensus         2 T~LDs~R~~~~la~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~eii~~k~~~~~~~~   81 (169)
T d1mlda2           2 TTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATL   81 (169)
T ss_dssp             CHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCH
T ss_pred             cccHHHHHHHHHHHHHCcCHHHeeEEEEEcCCCcceeehhhhhccCCCCcHHHHHHHHHHHHHhHHHHHHhhcCcChHhH
Confidence            78999999999999999999999999999998889999999998877788899999999999999999998877788889


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCeeEeeeecCCCCCccEEEEeEEEcCCceEEEccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 023853          190 SMAYAAAKFADACLRGLRGDAGVIECAYVASTVTELPFFASKVRLGRAGIEEIYSLGPLNEYERAGLEKAKKELAGSIQK  269 (276)
Q Consensus       190 s~A~a~~~li~ai~~~~~~~~~~~~~s~~~~~y~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~i~~~~~~  269 (276)
                      +.++++++++.+++.+..+...+.+++....++.+++|||+||+||++|+++++++++|+++|+++|++|++.||+.+++
T Consensus        82 ~~~~a~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~v~~s~P~~ig~~Gi~~v~~l~~L~~~E~~~l~~s~~~lk~~I~~  161 (169)
T d1mlda2          82 SMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKK  161 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccCCceEEEEEeeccccccCCEeEeeeEEEcCCccEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998875545555555543222235789999999999999999998569999999999999999999999


Q ss_pred             Hhhhhh
Q 023853          270 GVSFVR  275 (276)
Q Consensus       270 ~~~~~~  275 (276)
                      +++|+.
T Consensus       162 g~~fi~  167 (169)
T d1mlda2         162 GEEFVK  167 (169)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            999974
>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Back     information, alignment and structure
>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Back     information, alignment and structure
>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Back     information, alignment and structure
>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Back     information, alignment and structure
>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Back     information, alignment and structure
>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Back     information, alignment and structure
>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Back     information, alignment and structure
>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Back     information, alignment and structure
>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Back     information, alignment and structure
>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Back     information, alignment and structure
>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Back     information, alignment and structure
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Back     information, alignment and structure
>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Back     information, alignment and structure
>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Back     information, alignment and structure
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Back     information, alignment and structure
>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Back     information, alignment and structure
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Back     information, alignment and structure
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Back     information, alignment and structure
>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure