Citrus Sinensis ID: 023865

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALANKSLDSEGESWNHRVVTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEEYDWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDR
Secondary Structure (PSIPRED)
cccccccHHHHcccccccEEEccccccccHHHHHHcccccccccHHHHHHHHcccccccccHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEEEEcccccEEccccccccccEEEEEEcccccccccccEcccccccccccccccEEEEEEccccccccEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHcccccccccccc
Coil and Loop (DISEMBL)
MAVVVGNLALLldvasprtlitdrksrpLALDVLlnlpkrdlhlNYSALANKsldsegeswnhrvvtrgkvnskvnavdfdagssdeengngngekeeYDWEKEMRRRVKEIEEMRELEKKAEELQSKaeeddseseakEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGaltiiprptffggEIQIWLAMAYEANNRHADCIALYKQlesnhpskniRRQAADLRYILQapklkisqeemvtipligssydr
Flexible Loop (DISEMBL)
MAVVVGNLAllldvasprtlitdrksrplALDVLLNLPKRDLHLNYSALANksldsegeswnhrvvtrgkvnskvnavdfdagssdeengngngekeeydwekEMRRRVKEIEEMRELEKKaeelqskaeeddseseakeeteeekrmRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQapklkisqeemvtipligssydr
Low Complexity Region (SEG)
MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALANKSLDSEGESWNHRVVTRGKVNSKVNAVDFDAGSSDeengngngekeeYDWEKEMRRRVkeieemrelekkaeeLQSkaeeddseseakeeteeekrmrvrrelekvAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDR
Disordered region (IsUnstruct)
**VVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALAN*********WNHRVVT*****************************************************************************************************QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE*********RQAADLRYILQAPKLKISQEEMVTIPL*******
Disordered Region (DISOPRED)
*****GNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLH*********SLDSEGESWN************************************************************************************************************MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIP*I******
Disordered Region (DISEMBL)
MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALANKSLDSEGESWNHRVVTRGKVNSKVNAVDFDAG********************EMRRRVKEIEEMR**********************************RRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDR
Disordered Region (DISPRO)
MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALANKSLDSEGESWNHRVVTRGKVNS*************************YDWEKEMRRRVKEIEEMRELEKKAEELQSKAEE*************EKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIG*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALANKSLDSEGESWNHRVVTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEEYDWxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYDR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
449434973	343	PREDICTED: uncharacterized protein LOC10	0.981	0.790	0.744	1e-105
255574017	345	conserved hypothetical protein [Ricinus	0.978	0.782	0.765	1e-104
225470567	346	PREDICTED: uncharacterized protein LOC10	0.974	0.777	0.720	1e-102
297814880	349	binding protein [Arabidopsis lyrata subs	0.974	0.770	0.667	8e-98
15231576	350	uncharacterized protein [Arabidopsis tha	0.974	0.768	0.658	1e-95
312281531	354	unnamed protein product [Thellungiella h	0.974	0.759	0.656	5e-93
357517317	321	hypothetical protein MTR_8g069450 [Medic	0.916	0.788	0.675	3e-87
2253092	339	hypothetical protein [Spinacia oleracea]	0.945	0.769	0.595	2e-84
356563260	328	PREDICTED: uncharacterized protein LOC10	0.873	0.734	0.673	3e-75
388523007	254	unknown [Medicago truncatula]	0.847	0.921	0.639	4e-75

>gi|449434973|ref|XP_004135270.1| PREDICTED: uncharacterized protein LOC101221356 [Cucumis sativus] gi|449521583|ref|XP_004167809.1| PREDICTED: uncharacterized protein LOC101229482 [Cucumis sativus]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/278 (74%), Positives = 238/278 (85%), Gaps = 7/278 (2%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLNYSALANKSLDSEGES 60
           MAVV+GN ALLLDV SPR ++ DRK+RPLALDV+L+L KRDL+  Y+A+  KS +++GE+
Sbjct: 1   MAVVLGNWALLLDVTSPRIVLADRKARPLALDVVLSLHKRDLNAYYAAIVGKSFEADGEA 60

Query: 61  WNHRVVTRGKVNSKVNA-VDFDAGSSDEENGNGNG--EKEEYDWEKEMRRRVKEIEEMRE 117
            + R+V RGK NSK N  V+F+  S +EEN   NG  E+E+ DWE+EMR+RVKEIEE RE
Sbjct: 61  RSQRIVARGKANSKKNGGVEFE--SDEEENWESNGLDEEEKLDWEQEMRKRVKEIEERRE 118

Query: 118 LEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQK 177
           LEKKAEE+QS+ EE    SE  EETEEEKRMRVR+ELEKVAKEQAERRATA+LMFELGQK
Sbjct: 119 LEKKAEEIQSQVEE--EGSEGIEETEEEKRMRVRKELEKVAKEQAERRATAELMFELGQK 176

Query: 178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237
           AYG+GMY RAIEFLEGALTIIPRPT FGGEIQIWLAMAYEANNRH DCIALY+QLE  HP
Sbjct: 177 AYGRGMYSRAIEFLEGALTIIPRPTLFGGEIQIWLAMAYEANNRHGDCIALYRQLEKTHP 236

Query: 238 SKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYD 275
           S +IRRQAA+LRYILQAPK+KISQEEMVTIPLIGSSYD
Sbjct: 237 SVSIRRQAAELRYILQAPKIKISQEEMVTIPLIGSSYD 274

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574017|ref|XP_002527926.1| conserved hypothetical protein [Ricinus communis] gi|223532701|gb|EEF34483.1| conserved hypothetical protein [Ricinus communis]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/281 (76%), Positives = 239/281 (85%), Gaps = 11/281 (3%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLH---LNYSALANKSLDSE 57
           MAVV GNLALLLDV SP  ++ +RK RP+++DV+LNLPKRD H    +  +L +KS +S 
Sbjct: 1   MAVVGGNLALLLDVISPWAVVLERKMRPVSVDVVLNLPKRDHHHHTCSSVSLGSKSFESG 60

Query: 58  G-ESWNHRVVTRGKVNSKVNAVDFDAGSSDEENG-NGNGEKEE-YDWEKEMRRRVKEIEE 114
           G ES   RVVTRGK NSK+N VDFD   SDEE+G NG GE+E    WEKEMR+RVKEIEE
Sbjct: 61  GKESRKQRVVTRGKANSKMNGVDFD---SDEESGSNGEGEEEPALGWEKEMRKRVKEIEE 117

Query: 115 MRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFEL 174
           MRELEKKAEELQSKAEE  +ESE +EETEEEKRMRVR+ELEKVA+EQAERR TAQLMFEL
Sbjct: 118 MRELEKKAEELQSKAEE--TESEDREETEEEKRMRVRKELEKVAREQAERRETAQLMFEL 175

Query: 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234
           GQKAYGKGMY RAIEFLE ALTIIPR T FGGEIQIWLAMAYEANNRH DCIALY+QLE 
Sbjct: 176 GQKAYGKGMYARAIEFLEAALTIIPRSTLFGGEIQIWLAMAYEANNRHKDCIALYRQLEM 235

Query: 235 NHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYD 275
           +HPS +IRRQAA+LRYILQAPKLKISQEEMVTIPLIGS+YD
Sbjct: 236 SHPSISIRRQAANLRYILQAPKLKISQEEMVTIPLIGSAYD 276

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470567|ref|XP_002272662.1| PREDICTED: uncharacterized protein LOC100264929 [Vitis vinifera]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/283 (72%), Positives = 231/283 (81%), Gaps = 14/283 (4%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLN---YSALANKSLDSE 57
           MAVV+GN+ALLLDV SP T I DRK+R  + +V+LNL KRD H +   Y++LA KS +S+
Sbjct: 1   MAVVLGNIALLLDVTSPLTGIPDRKARTASHEVVLNLSKRDSHHSTNAYASLATKSFESD 60

Query: 58  GESWNHRVVTRGKVNSKVNAVDFDAGSSDEENGNGNGEKE-----EYDWEKEMRRRVKEI 112
           GE+ NHRVV RGK NSKVN VD DAGSSDEE        +      +DWEK MR+R+KEI
Sbjct: 61  GEARNHRVVARGKANSKVNGVDSDAGSSDEEGNGNGNGNDDEDEETFDWEKAMRKRMKEI 120

Query: 113 EEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMF 172
           EEM+ELE KAEELQS+       +E +EE+EEEKRMRVR+ELEKVAKEQAERRATAQLMF
Sbjct: 121 EEMKELEMKAEELQSRV------AEGQEESEEEKRMRVRKELEKVAKEQAERRATAQLMF 174

Query: 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232
           +LGQ+AYGKG Y RAIEF EGALTIIP PT FGGEIQIWLAMAYEANNRHADCIALY+QL
Sbjct: 175 DLGQRAYGKGTYSRAIEFFEGALTIIPPPTLFGGEIQIWLAMAYEANNRHADCIALYQQL 234

Query: 233 ESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYD 275
           E  HPS +IRRQAADLRYILQAPKLKI+QEEMVTIPLIGSSYD
Sbjct: 235 ERKHPSVSIRRQAADLRYILQAPKLKITQEEMVTIPLIGSSYD 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814880|ref|XP_002875323.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297321161|gb|EFH51582.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  362 bits (930), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 191/286 (66%), Positives = 226/286 (79%), Gaps = 17/286 (5%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLN---YSALA-NKSLDS 56
           MA V+GN+ALLLDV S RT++TDR+ R   +DV+LNLPKRD H +   Y+AL+ NK L+S
Sbjct: 1   MAAVIGNVALLLDVNSHRTVVTDRRIRLTVVDVVLNLPKRDSHSHVSHYAALSSNKPLES 60

Query: 57  EGESWNHRVVTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEE-------YDWEKEMRRRV 109
           +GE+   R +TRGK NS+ NAVDFD   S +E  +  G           +D EKE +RR 
Sbjct: 61  DGEARIRRFLTRGKANSRANAVDFDDAGSSDEESSDGGGGGGDEEEEEDFDVEKERKRRA 120

Query: 110 KEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQ 169
           KE ++M+ELE+KAEELQ K +E+  +SE      E+KRMRV+REL+KVA+EQAERR TA+
Sbjct: 121 KEFQDMKELERKAEELQYKIDEEGDDSE------EKKRMRVKRELQKVAQEQAERRKTAE 174

Query: 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALY 229
           LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT FGGEIQIWLAMAYEANNRHADCI LY
Sbjct: 175 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTLFGGEIQIWLAMAYEANNRHADCIDLY 234

Query: 230 KQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYD 275
           +QLE  HPS  IRRQA++LRYILQAPKLKISQEEMVTIP+IGSSYD
Sbjct: 235 QQLEKKHPSPGIRRQASELRYILQAPKLKISQEEMVTIPMIGSSYD 280

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231576|ref|NP_189290.1| uncharacterized protein [Arabidopsis thaliana] gi|1402877|emb|CAA66827.1| hypothetical protein [Arabidopsis thaliana] gi|1495257|emb|CAA66117.1| orf03 [Arabidopsis thaliana] gi|9293937|dbj|BAB01840.1| unnamed protein product [Arabidopsis thaliana] gi|22655244|gb|AAM98212.1| unknown protein [Arabidopsis thaliana] gi|28059607|gb|AAO30074.1| unknown protein [Arabidopsis thaliana] gi|110742431|dbj|BAE99134.1| hypothetical protein [Arabidopsis thaliana] gi|332643661|gb|AEE77182.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  355 bits (911), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 189/287 (65%), Positives = 223/287 (77%), Gaps = 18/287 (6%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLPKRDLHLN---YSALA-NKSLDS 56
           MA V+GN+ALLLDV S RT++TDR+ R   +DV+LNL KRD H +   Y+AL+ NK L+S
Sbjct: 1   MAAVIGNVALLLDVNSHRTVVTDRRIRLTVVDVVLNLQKRDSHSHVSHYAALSSNKPLES 60

Query: 57  EGESWNHRVVTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEE--------YDWEKEMRRR 108
           +GE+   R +TRGK NS+ NAVDFD   S +E  +  G            +D EKE +RR
Sbjct: 61  DGEARVRRFLTRGKANSRANAVDFDDAGSSDEESSDGGGGGGDEEEEEEYFDVEKERKRR 120

Query: 109 VKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATA 168
            KE  + +ELE+KAEELQ K +E+  +SE      E+KRMRV+REL+KVA+EQAERR TA
Sbjct: 121 AKEFHDTKELERKAEELQYKIDEEGDDSE------EKKRMRVKRELQKVAQEQAERRKTA 174

Query: 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIAL 228
           +LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT FGGEIQIWLAMAYEANNRHADCI L
Sbjct: 175 ELMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTLFGGEIQIWLAMAYEANNRHADCIDL 234

Query: 229 YKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYD 275
           Y+QLE  HPS  IRRQA++LRYILQAPKLKISQEEMVTIP+IGSSYD
Sbjct: 235 YQQLEKKHPSPGIRRQASELRYILQAPKLKISQEEMVTIPMIGSSYD 281

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281531|dbj|BAJ33631.1| unnamed protein product [Thellungiella halophila]

 Score =  346 bits (888), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 191/291 (65%), Positives = 225/291 (77%), Gaps = 22/291 (7%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLP--KRDLHLN--YSALA-NKSLD 55
           MA V+GN+ALLLDV S R ++TDR+ R    D++LNL   KRD H +  Y+AL+ NK L+
Sbjct: 1   MAAVIGNVALLLDVNSHRAVVTDRRIRLTVADIVLNLQSQKRDSHSHAYYAALSSNKPLE 60

Query: 56  SEGESWNHRVVTRGKVNSKVNAVDFDAGSSDEENGN-----------GNGEKEEYDWEKE 104
           S+G++   R +TRGK NS+ NAVDFD   S +E               + E++ YD EKE
Sbjct: 61  SDGDARIRRFLTRGKANSRANAVDFDDAGSSDEESGGDGGGGGDGMETDEEEKAYDLEKE 120

Query: 105 MRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAER 164
            +RR KE+++M ELE+KAEELQ K EE+  +SE K      KRMRV+RELEKVA+EQAER
Sbjct: 121 RKRRAKELQDMMELERKAEELQYKVEEEGEDSEEK------KRMRVKRELEKVAQEQAER 174

Query: 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHAD 224
           RATA+LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT FGGEIQIWLAMAYEANNRHAD
Sbjct: 175 RATAELMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTLFGGEIQIWLAMAYEANNRHAD 234

Query: 225 CIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYD 275
           CI LY+QLE  HPS  IRRQA++LRYILQAPKLKISQEEMVTIP+IGSSYD
Sbjct: 235 CIDLYQQLEKRHPSPGIRRQASELRYILQAPKLKISQEEMVTIPMIGSSYD 285

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517317|ref|XP_003628947.1| hypothetical protein MTR_8g069450 [Medicago truncatula] gi|355522969|gb|AET03423.1| hypothetical protein MTR_8g069450 [Medicago truncatula]

 Score =  327 bits (839), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 187/277 (67%), Positives = 219/277 (79%), Gaps = 24/277 (8%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLP-KRDLHLNYSALANKSLDSEGE 59
           MAV +GNL +LLD++SPRTL  DRK        LL LP KRD     S+  + S   +GE
Sbjct: 1   MAVSLGNLTILLDISSPRTLTLDRKP-------LLTLPLKRD-----SSSCSCSYGCDGE 48

Query: 60  SWNHRVVTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEEYDWEKEMRRRVKEIEEMRELE 119
                VV RGK NS+ N VDFD+  SDEE G G+G+    D+E ++RRRVKE EE RELE
Sbjct: 49  VRGRVVVARGKSNSEQNGVDFDS-ESDEEGGLGDGD----DFETKIRRRVKEFEERRELE 103

Query: 120 KKAEE-LQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKA 178
           KKAEE LQSK      + + +EE+EEEKRMRV++ELEKVAKEQAERRATAQLM++LG+KA
Sbjct: 104 KKAEEYLQSK-----GDDDGEEESEEEKRMRVKKELEKVAKEQAERRATAQLMYDLGKKA 158

Query: 179 YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238
           YG+G YGRA+EFLEGALTIIPRPT FGGEIQIWLAMAYEANNRH DCIALYKQLE++HPS
Sbjct: 159 YGRGSYGRAVEFLEGALTIIPRPTLFGGEIQIWLAMAYEANNRHKDCIALYKQLENSHPS 218

Query: 239 KNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYD 275
            +I+RQAA+LRYIL+APKLKI+QEEMVTIPLIGSSYD
Sbjct: 219 ISIKRQAAELRYILEAPKLKITQEEMVTIPLIGSSYD 255

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2253092|emb|CAA74590.1| hypothetical protein [Spinacia oleracea]

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 169/284 (59%), Positives = 208/284 (73%), Gaps = 23/284 (8%)

Query: 1   MAVVVGNLALLLDVASPRTLITD--RKSRPLALDVLLNL--PKRDLHLNYSALANKSLDS 56
           MA V+G L L +D+  P  +++D  +K R L  DV+L+L  P+RD               
Sbjct: 1   MATVLGTLVLPVDLTLPAKIVSDHRKKLRLLPYDVVLSLGLPRRD--------------K 46

Query: 57  EGESWNHRV-VTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEE----YDWEKEMRRRVKE 111
           E + W   + + R   + K NAV++ +G  +           +    +DWE EMR+RVKE
Sbjct: 47  EFQLWGENLSLGRLSFSRKSNAVEYSSGDENGNGNGEEEGGGDDEPVFDWETEMRKRVKE 106

Query: 112 IEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLM 171
           IEEMRELEKKAEELQ + +++ S+    +ETEEEK+MRVR+ELEKVAKEQAERRATAQLM
Sbjct: 107 IEEMRELEKKAEELQGRIDDEGSDGSGVDETEEEKKMRVRKELEKVAKEQAERRATAQLM 166

Query: 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231
           FELGQKAYG+GMY R+IEF E ALTIIPRPT FGGEIQIWLAMAYEAN+RHADCIALYK+
Sbjct: 167 FELGQKAYGRGMYKRSIEFFEAALTIIPRPTLFGGEIQIWLAMAYEANSRHADCIALYKK 226

Query: 232 LESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYD 275
           LE  HPS +IRRQAA+LRYIL+APK+KI+QEEMVTIPLIG+SYD
Sbjct: 227 LEKGHPSVSIRRQAAELRYILEAPKIKITQEEMVTIPLIGNSYD 270

Source: Spinacia oleracea

Species: Spinacia oleracea

Genus: Spinacia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563260|ref|XP_003549882.1| PREDICTED: uncharacterized protein LOC100789105 [Glycine max]

 Score =  287 bits (735), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 177/263 (67%), Positives = 199/263 (75%), Gaps = 22/263 (8%)

Query: 16  SPRTLITDRKSRPLALDVLLNLP--KRDLHLNYSALANKSLDSEGESWNHRVVTRGKVNS 73
           SPR++I +RK+RP   DV+L  P  KRD                  S ++ VV RGK NS
Sbjct: 16  SPRSVILERKARPAGSDVVLCAPPSKRDYP---------------SSSSYAVVARGKSNS 60

Query: 74  KVNAVDFDAGSSDEENGNGNGEKEEY-DWEKEMRRRVKEIEEMRELEKKAEELQSKAEED 132
           + N VDFD+   +EE   G G    + DWE EMR+RV+E EE RELEKKAEELQS+    
Sbjct: 61  EKNGVDFDSDEEEEEEEEGGGGGGGFVDWETEMRQRVREFEERRELEKKAEELQSRV--- 117

Query: 133 DSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLE 192
             E   +EETEEEKRMRVR+ELEKVAKEQAERRATAQLMF+LGQKAYGKG YGRAIEFLE
Sbjct: 118 -GEEGEEEETEEEKRMRVRKELEKVAKEQAERRATAQLMFDLGQKAYGKGSYGRAIEFLE 176

Query: 193 GALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252
            ALTIIP PT FGGEIQIWLAMAYEA+NRH DCIALY+QLE  HPS +IRRQAA+LRYIL
Sbjct: 177 AALTIIPGPTLFGGEIQIWLAMAYEAHNRHKDCIALYRQLEKTHPSVSIRRQAAELRYIL 236

Query: 253 QAPKLKISQEEMVTIPLIGSSYD 275
           QAPKLKISQEEMVTIPLIGS+YD
Sbjct: 237 QAPKLKISQEEMVTIPLIGSTYD 259

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388523007|gb|AFK49565.1| unknown [Medicago truncatula]

 Score =  287 bits (734), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 165/258 (63%), Positives = 195/258 (75%), Gaps = 24/258 (9%)

Query: 1   MAVVVGNLALLLDVASPRTLITDRKSRPLALDVLLNLP-KRDLHLNYSALANKSLDSEGE 59
           MAV +GNL +LLD++SPRTL  DRK        LL LP KRD      +        +GE
Sbjct: 1   MAVSLGNLTILLDISSPRTLTLDRKP-------LLTLPLKRDSSSCSCSYG-----CDGE 48

Query: 60  SWNHRVVTRGKVNSKVNAVDFDAGSSDEENGNGNGEKEEYDWEKEMRRRVKEIEEMRELE 119
                VV RGK NS+ N VDFD+  SDEE G G+G+    D+E ++RRRVKE EE RELE
Sbjct: 49  VRGRVVVARGKSNSEQNGVDFDS-ESDEEGGLGDGD----DFETKIRRRVKEFEERRELE 103

Query: 120 KKAEE-LQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKA 178
           KKAEE LQSK      + + +EE+EEEKRMRV++ELEKVAKEQAERRATAQLM++LG+KA
Sbjct: 104 KKAEEYLQSK-----GDDDGEEESEEEKRMRVKKELEKVAKEQAERRATAQLMYDLGKKA 158

Query: 179 YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238
           YG+G YGRA+EFLEGALTIIPRPT FGGEIQIWLAMAYEANNRH DCIALYKQLE++HPS
Sbjct: 159 YGRGSYGRAVEFLEGALTIIPRPTLFGGEIQIWLAMAYEANNRHKDCIALYKQLENSHPS 218

Query: 239 KNIRRQAADLRYILQAPK 256
            +I+RQAA+LRYIL + K
Sbjct: 219 ISIKRQAAELRYILGSTK 236

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
TAIR|locus:2088812	350	AT3G26580 "AT3G26580" [Arabido	0.427	0.337	0.889	3.6e-76

TAIR|locus:2088812 AT3G26580 "AT3G26580" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
 Identities = 105/118 (88%), Positives = 111/118 (94%)

Query:   158 AKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE 217
             A+EQAERR TA+LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT FGGEIQIWLAMAYE
Sbjct:   164 AQEQAERRKTAELMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTLFGGEIQIWLAMAYE 223

Query:   218 ANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEEMVTIPLIGSSYD 275
             ANNRHADCI LY+QLE  HPS  IRRQA++LRYILQAPKLKISQEEMVTIP+IGSSYD
Sbjct:   224 ANNRHADCIDLYQQLEKKHPSPGIRRQASELRYILQAPKLKISQEEMVTIPMIGSSYD 281

GO:0008150 "biological_process" evidence=ND

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	276
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-04

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 20/76 (26%), Positives = 42/76 (55%)

Query: 91   NGNGEKEEYDWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRV 150
                + EE     E +++ +E ++  E +KKAEE + KA+E    +EAK++ +E K+   
Sbjct: 1461 EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEE 1520

Query: 151  RRELEKVAKEQAERRA 166
             ++ ++  K +  ++A
Sbjct: 1521 AKKADEAKKAEEAKKA 1536

Length = 2084

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.72
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.7
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.68
PF13512	142	TPR_18: Tetratricopeptide repeat	98.49
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.44
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.4
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.38
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.33
PRK10803	263	tol-pal system protein YbgF; Provisional	98.31
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.14
PF13371	73	TPR_9: Tetratricopeptide repeat	98.12
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.04
PRK15359	144	type III secretion system chaperone protein SscB;	98.01
PRK10803	263	tol-pal system protein YbgF; Provisional	97.97
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.97
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.88
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.86
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.71
PRK15359	144	type III secretion system chaperone protein SscB;	97.68
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.66
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.62
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.61
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.57
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.57
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.54
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.54
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.53
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.46
PF12688	120	TPR_5: Tetratrico peptide repeat	97.43
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.41
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.41
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.4
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.39
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.33
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.33
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.28
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	97.28
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.25
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.2
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.19
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.15
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.1
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.08
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.01
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.95
PRK11189	296	lipoprotein NlpI; Provisional	96.94
PRK11788	389	tetratricopeptide repeat protein; Provisional	96.85
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.77
PF13428	44	TPR_14: Tetratricopeptide repeat	96.76
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	96.73
PRK10370	198	formate-dependent nitrite reductase complex subuni	96.67
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	96.64
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.6
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.59
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	96.56
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	96.54
PF13512	142	TPR_18: Tetratricopeptide repeat	96.5
PRK12370	553	invasion protein regulator; Provisional	96.49
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.46
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.43
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.38
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.34
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	96.34
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.31
PRK14574	822	hmsH outer membrane protein; Provisional	96.28
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.27
PRK11189	296	lipoprotein NlpI; Provisional	96.27
KOG0553	304	consensus TPR repeat-containing protein [General f	96.25
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.25
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	96.21
PRK12370	553	invasion protein regulator; Provisional	96.2
PRK15331	165	chaperone protein SicA; Provisional	96.19
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.17
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.11
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.04
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.94
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	95.94
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	95.93
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	95.84
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	95.74
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	95.7
PRK14574	822	hmsH outer membrane protein; Provisional	95.69
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	95.59
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	95.54
PRK15331	165	chaperone protein SicA; Provisional	95.41
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	95.37
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	95.28
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.26
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	95.25
PF12688	120	TPR_5: Tetratrico peptide repeat	95.19
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	95.18
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	95.13
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.0
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.94
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.85
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.53
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.47
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	94.39
PF13428	44	TPR_14: Tetratricopeptide repeat	94.35
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	94.32
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	94.18
PF13431	34	TPR_17: Tetratricopeptide repeat	93.87
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	93.66
COG4700	251	Uncharacterized protein conserved in bacteria cont	93.59
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	93.56
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	93.19
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	93.04
KOG2076	895	consensus RNA polymerase III transcription factor	93.01
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	92.81
COG3118	304	Thioredoxin domain-containing protein [Posttransla	92.75
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	92.72
KOG2076	895	consensus RNA polymerase III transcription factor	92.48
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	92.41
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	92.11
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	91.87
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	91.73
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	91.64
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.51
COG4783	484	Putative Zn-dependent protease, contains TPR repea	91.05
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	90.8
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	90.77
PF07219	108	HemY_N: HemY protein N-terminus; InterPro: IPR0108	90.61
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	90.41
COG4105	254	ComL DNA uptake lipoprotein [General function pred	90.1
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	89.99
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	89.66
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	89.57
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	89.54
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	89.02
PF02064	121	MAS20: MAS20 protein import receptor; InterPro: IP	88.6
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	88.56
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	88.54
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.52
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.27
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	87.65
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	87.53
PRK04841	903	transcriptional regulator MalT; Provisional	87.39
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	87.26
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	87.0
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	86.89
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	86.75
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	86.69
COG4700	251	Uncharacterized protein conserved in bacteria cont	86.34
COG0457	291	NrfG FOG: TPR repeat [General function prediction	86.26
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	85.68
PRK04841	903	transcriptional regulator MalT; Provisional	85.63
KOG0547	606	consensus Translocase of outer mitochondrial membr	85.58
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	85.49
KOG0547	606	consensus Translocase of outer mitochondrial membr	85.36
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	84.95
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	84.59
KOG4234	271	consensus TPR repeat-containing protein [General f	84.42
PRK11619	644	lytic murein transglycosylase; Provisional	84.25
PF13371	73	TPR_9: Tetratricopeptide repeat	83.9
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	83.87
KOG3364	149	consensus Membrane protein involved in organellar	83.86
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	83.37
KOG4234	271	consensus TPR repeat-containing protein [General f	83.32
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	83.22
COG0457	291	NrfG FOG: TPR repeat [General function prediction	83.08
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	82.8
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	82.43
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	82.27
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	82.07
KOG2003	840	consensus TPR repeat-containing protein [General f	81.73
KOG1126	638	consensus DNA-binding cell division cycle control	81.19
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	81.12
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	80.74
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	80.55

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.72  E-value=1e-07  Score=81.91  Aligned_cols=81  Identities=23%  Similarity=0.341  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA  246 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAK  246 (276)
                      +++..|..|..+|++|+|.+||..|+.+....| +|+...+++++++.||...|+.++|+..|+.++..||+..-..+|-
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYP-NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            467899999999999999999999999888654 5888899999999999999999999999999999999998777775


Q ss_pred             HH
Q 023865          247 DL  248 (276)
Q Consensus       247 qL  248 (276)
                      .+
T Consensus        83 Y~   84 (203)
T PF13525_consen   83 YM   84 (203)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.70  E-value=4.7e-08  Score=68.40  Aligned_cols=57  Identities=28%  Similarity=0.378  Sum_probs=52.0

Q ss_pred             HHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       178 ALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ++++|+|.+|+++|++++...|.+..    +++.|+.+|...|+.++|..+|+.+...+|+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~   57 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPE----ARLLLAQCYLKQGQYDEAEELLERLLKQDPD   57 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            58899999999999999997777554    9999999999999999999999999999998

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.68  E-value=1.5e-07  Score=65.83  Aligned_cols=64  Identities=25%  Similarity=0.333  Sum_probs=56.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       172 yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      |..|...+++|+|.+|+..|+.++...|    ...+++++|+.+|...|+.++|+.+|+.+++..|+.
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P----~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDP----DNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCST----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            5789999999999999999999999654    466799999999999999999999999998788863

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.49  E-value=9.5e-07  Score=75.61  Aligned_cols=80  Identities=29%  Similarity=0.311  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq  247 (276)
                      +...|+.|+.+|++|+|..||+.||.+.+..| .++..-++|++|+-||..+|+.++|++.++.+++-||...---+|-.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP-~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYP-FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            56789999999999999999999999777555 45555699999999999999999999999999999998776666554


Q ss_pred             H
Q 023865          248 L  248 (276)
Q Consensus       248 L  248 (276)
                      +
T Consensus        89 ~   89 (142)
T PF13512_consen   89 M   89 (142)
T ss_pred             H
Confidence            4

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.44  E-value=3.7e-06  Score=62.35  Aligned_cols=76  Identities=17%  Similarity=0.260  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA  245 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQA  245 (276)
                      ...|..|...+..|+|..|+.+|+.++...|.+. .-..+.+.++.+|...|+.++|+.+++.+...+|+.....+|
T Consensus        40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  115 (119)
T TIGR02795        40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP-KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA  115 (119)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC-cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence            3455566666666666666666666665544332 112456666666666666666666666666666666665555

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.40  E-value=2.1e-06  Score=76.96  Aligned_cols=83  Identities=18%  Similarity=0.149  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA  246 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAK  246 (276)
                      .++..|..|..++.+|+|.+||+.|+.++...| .++...++++||+.||...|+.+.|+..++..++.||+..-..+|-
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            456689999999999999999999999998666 5588889999999999999999999999999999999998888777


Q ss_pred             HHHH
Q 023865          247 DLRY  250 (276)
Q Consensus       247 qLLy  250 (276)
                      .++.
T Consensus       110 Y~~g  113 (243)
T PRK10866        110 YMRG  113 (243)
T ss_pred             HHHH
Confidence            7654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.38  E-value=9.4e-07  Score=62.15  Aligned_cols=67  Identities=27%  Similarity=0.420  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-RHADCIALYKQLESNHP  237 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G-q~EkAIALCQ~L~~~HP  237 (276)
                      .|...+..|..++..|+|.+||..|++++...|.+.    .+.+.++.+|...| +.++|+..|++.++-.|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~----~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA----EAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH----HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            366788999999999999999999999999766554    49999999999999 79999999999885544

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.33  E-value=7e-06  Score=60.87  Aligned_cols=70  Identities=20%  Similarity=0.381  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +..|..|...+.+|+|..|+..|+.++...|. ++....+.++++.+|...|+.+.|+.+|+.+...+|+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPK-STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence            56799999999999999999999999987654 34456899999999999999999999999998778884

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.31  E-value=6.8e-06  Score=75.13  Aligned_cols=82  Identities=18%  Similarity=0.229  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL  248 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL  248 (276)
                      ...|-.|...|.+|+|..|+..|..++...| .++....+.+.++.+|...|+.++|+.+|+++++.||++.....|++.
T Consensus       181 ~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~r  259 (263)
T PRK10803        181 NANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKR  259 (263)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence            4667888888888888888888888887665 445567788888888888889999999998888888888888888877


Q ss_pred             HHh
Q 023865          249 RYI  251 (276)
Q Consensus       249 LyI  251 (276)
                      |..
T Consensus       260 L~~  262 (263)
T PRK10803        260 LNA  262 (263)
T ss_pred             Hhc
Confidence            653

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.14  E-value=7.2e-05  Score=60.56  Aligned_cols=85  Identities=15%  Similarity=0.093  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865          162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (276)
Q Consensus       162 a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV  241 (276)
                      ..+.+.+...|.....++..|++..+.+.++.++. ..++++....++|.||.+|...|+.++|++.++++....|++.+
T Consensus         5 ~~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~-~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l   83 (145)
T PF09976_consen    5 QQQAEQASALYEQALQALQAGDPAKAEAAAEQLAK-DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL   83 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH
Confidence            44566688899999999999999999888999777 45566778899999999999999999999999999988889988


Q ss_pred             HHHHHH
Q 023865          242 RRQAAD  247 (276)
Q Consensus       242 RqQAKq  247 (276)
                      +..|+-
T Consensus        84 ~~~a~l   89 (145)
T PF09976_consen   84 KPLARL   89 (145)
T ss_pred             HHHHHH
Confidence            877754

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.12  E-value=2.7e-05  Score=55.10  Aligned_cols=70  Identities=19%  Similarity=0.122  Sum_probs=62.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023865          176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR  249 (276)
Q Consensus       176 ~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL  249 (276)
                      ..++.+++|..|++.++.++...|.+..    +.+.++.+|...|+.++|+..|++..+.+|+.....+++.+|
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l   72 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPE----LWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML   72 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccch----hhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence            4678999999999999999997776444    889999999999999999999999999999999888887765

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.04  E-value=4.8e-05  Score=64.48  Aligned_cols=73  Identities=26%  Similarity=0.350  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV  241 (276)
                      +...|..|...+..|+|..|+..|+.++...| .++...++.+.++.+|...|+.++|+.+|+.++..+|+...
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~  105 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD  105 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence            55689999999999999999999999988665 44556679999999999999999999999999988996554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.01  E-value=7e-05  Score=61.42  Aligned_cols=81  Identities=15%  Similarity=0.041  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH----HHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK----NIRR  243 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~----qVRq  243 (276)
                      +...+..|......|+|.+|+..|..++...|.+.    .+.+.|+.+|...|+.++||+.|+..+...|+-    .++.
T Consensus        58 ~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~----~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~  133 (144)
T PRK15359         58 WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP----EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ  133 (144)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            44567788889999999999999999998665544    499999999999999999999999988777876    7888


Q ss_pred             HHHHHHHhh
Q 023865          244 QAADLRYIL  252 (276)
Q Consensus       244 QAKqLLyIL  252 (276)
                      +++.+|.-|
T Consensus       134 ~~~~~l~~~  142 (144)
T PRK15359        134 NAQIMVDTL  142 (144)
T ss_pred             HHHHHHHHH
Confidence            888877655

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.97  E-value=6.3e-05  Score=68.85  Aligned_cols=78  Identities=13%  Similarity=0.154  Sum_probs=67.0

Q ss_pred             HHHHHHHHHH-HhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023865          169 QLMFELGQKA-YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (276)
Q Consensus       169 e~~yeaG~aA-LerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq  247 (276)
                      ...|+.+... +.+|+|.+||..|+.++...|. +..-..+++||+.+|...|+.++|+..|+.+++.||+....-.|-.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            6789999986 6789999999999999997765 4455689999999999999999999999999999999765555543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.97  E-value=6.9e-05  Score=57.98  Aligned_cols=69  Identities=12%  Similarity=-0.044  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV  241 (276)
                      ...+..|...+..|+|.+|+..|+.++...|.+    ..+.+.++.+|...|+.++|+..++...+.+|+...
T Consensus        52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        52 RYWLGLAACCQMLKEYEEAIDAYALAAALDPDD----PRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            456778899999999999999999998865443    358899999999999999999999999988888776

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.88  E-value=8.9e-05  Score=48.92  Aligned_cols=65  Identities=26%  Similarity=0.409  Sum_probs=49.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      .+..|...+.+|+|..|+.+|+.++...+.+.    .+.++++.+|...|+.++|+.+|+.....+|..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   67 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKLGKYEEALEDYEKALELDPDN   67 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            46677788888888888888888887655432    578888888888888888888888877555554

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.86  E-value=0.00013  Score=61.91  Aligned_cols=67  Identities=21%  Similarity=0.112  Sum_probs=59.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      .+..|...+.+|+|.+|+..++.++...|. ++...++.+.++.+|...|+.++|+.+++.|..+||+
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~  235 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD  235 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            467788899999999999999999987664 4666789999999999999999999999999988874

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.71  E-value=0.00023  Score=61.38  Aligned_cols=84  Identities=19%  Similarity=0.220  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-----------HADCIALYKQLESNH  236 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq-----------~EkAIALCQ~L~~~H  236 (276)
                      .+..|..|.+.|..|+|..|+..++..+...|.+. .-..+.++++++|....+           ..+|+..|+.|+.++
T Consensus        42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y  120 (203)
T PF13525_consen   42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY  120 (203)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC
Confidence            34578889999999999999999999999777655 457999999999877543           459999999999999


Q ss_pred             CCHHHHHHHHHHHHhh
Q 023865          237 PSKNIRRQAADLRYIL  252 (276)
Q Consensus       237 Pd~qVRqQAKqLLyIL  252 (276)
                      |++.-...|+..+..|
T Consensus       121 P~S~y~~~A~~~l~~l  136 (203)
T PF13525_consen  121 PNSEYAEEAKKRLAEL  136 (203)
T ss_dssp             TTSTTHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHH
Confidence            9999999999877665

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.68  E-value=0.00017  Score=59.22  Aligned_cols=64  Identities=19%  Similarity=0.205  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      .+..|..++.+|+|..|+..|..++...|.+.    ++.+.|+.++...|+.++|+..|+....-.|+
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW----RAHIALAGTWMMLKEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            66779999999999999999999998666554    59999999999999999999999999976664

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.66  E-value=0.00037  Score=65.45  Aligned_cols=82  Identities=13%  Similarity=0.084  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQAA  246 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQAK  246 (276)
                      +...+..|...+..|+|..|+..|+.++...|.+    ..+++.|+.+|...|+.++|+..|+.....+|+ +.+..|-.
T Consensus        36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~----~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  111 (356)
T PLN03088         36 AELYADRAQANIKLGNFTEAVADANKAIELDPSL----AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIK  111 (356)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            5677888999999999999999999999976644    358999999999999999999999998877775 88888888


Q ss_pred             HHHHhhc
Q 023865          247 DLRYILQ  253 (276)
Q Consensus       247 qLLyILE  253 (276)
                      .+..-|.
T Consensus       112 ~~~~kl~  118 (356)
T PLN03088        112 ECDEKIA  118 (356)
T ss_pred             HHHHHHH
Confidence            8877773

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.62  E-value=0.00031  Score=54.39  Aligned_cols=73  Identities=15%  Similarity=0.216  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQ  244 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQ  244 (276)
                      ....+..|..++..|+|..|+++|+.++...|.+.    .+.+.++.+|...|+.++|+.+|++.+..+|+ +.+.-.
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~   90 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS----RYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH   90 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            45578899999999999999999999998766543    59999999999999999999999999867775 344433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.61  E-value=0.00027  Score=50.86  Aligned_cols=67  Identities=19%  Similarity=0.164  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC---CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP---RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~---~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      ++......|...+.+|+|.+|+.+|+++++...   ...+.-+.+..-|+.+|...|+.++|+.++++-.
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            466778899999999999999999999997632   2233347788899999999999999999998865

...

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.57  E-value=0.00018  Score=53.14  Aligned_cols=51  Identities=25%  Similarity=0.396  Sum_probs=35.0

Q ss_pred             hcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023865          180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL  232 (276)
Q Consensus       180 erGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L  232 (276)
                      ++|+|..||.+++++++..|.++  -..+.++||.+|...|+.++||.+|+++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~~   51 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQKL   51 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHCH
T ss_pred             CCccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            36778888888888777666532  2345666688888888888888888664

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.57  E-value=0.00051  Score=45.27  Aligned_cols=65  Identities=23%  Similarity=0.343  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      ...+..|...+..|+|..|+.+|+.++...+...    .+...++.+|...|+.++|+.+++.+...+|
T Consensus        35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA----KAYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch----hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            3467778888889999999999999998766554    6889999999999999999999999885555

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.54  E-value=0.0006  Score=63.57  Aligned_cols=80  Identities=24%  Similarity=0.251  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq  247 (276)
                      +...|+.|++.|+.|+|.+||..||.+...+| .++..-|+|+-|+.||...|+.+.|+......+..||...=...|-.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p-~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHP-FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            67799999999999999999999999776554 56666899999999999999999999999999888988766666655


Q ss_pred             H
Q 023865          248 L  248 (276)
Q Consensus       248 L  248 (276)
                      |
T Consensus       113 l  113 (254)
T COG4105         113 L  113 (254)
T ss_pred             H
Confidence            4

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.54  E-value=0.001  Score=59.80  Aligned_cols=83  Identities=12%  Similarity=0.072  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC------------------hHHHHHHHH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR------------------HADCIALYK  230 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq------------------~EkAIALCQ  230 (276)
                      +..|..|...|..|+|..|+..++.++...|.+.. -..+.+.+++++...|+                  ..+|+..++
T Consensus        70 ~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~  148 (243)
T PRK10866         70 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFS  148 (243)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHH
Confidence            34688999999999999999999999998776644 47899999998766652                  368999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHhh
Q 023865          231 QLESNHPSKNIRRQAADLRYIL  252 (276)
Q Consensus       231 ~L~~~HPd~qVRqQAKqLLyIL  252 (276)
                      .|+++||+++-...|+..|..|
T Consensus       149 ~li~~yP~S~ya~~A~~rl~~l  170 (243)
T PRK10866        149 KLVRGYPNSQYTTDATKRLVFL  170 (243)
T ss_pred             HHHHHCcCChhHHHHHHHHHHH
Confidence            9999999999999999866554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.53  E-value=0.00012  Score=44.71  Aligned_cols=33  Identities=18%  Similarity=0.259  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          207 EIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +++++++.+|...|+.++|+.+++.++++||++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            578999999999999999999999999999974

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.46  E-value=0.0011  Score=52.57  Aligned_cols=61  Identities=13%  Similarity=0.090  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      ...+..|...+.+|+|..|++++++++...+.+.    .+.+.++.+|...|+.++|+.+|+...
T Consensus        66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~g~~~~A~~~~~~~~  126 (234)
T TIGR02521        66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNG----DVLNNYGTFLCQQGKYEQAMQQFEQAI  126 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            3445556666677777777777777766544332    366666777777777777777777766

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.43  E-value=0.0012  Score=54.52  Aligned_cols=78  Identities=18%  Similarity=0.149  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL  248 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL  248 (276)
                      ..|+.|-.--..|+..+||.+++.++.. .......-++.|.|+.+|...|+.++|+++.++....||+.+.....+-+
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            4678888888899999999999999884 44455556799999999999999999999999999888987766665544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.41  E-value=0.0033  Score=50.31  Aligned_cols=73  Identities=23%  Similarity=0.329  Sum_probs=55.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------hCCCHHHHHHH
Q 023865          173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES-------NHPSKNIRRQA  245 (276)
Q Consensus       173 eaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~-------~HPd~qVRqQA  245 (276)
                      ..+...+..|+|..|+.++..++...|.+-.    +..+|..+|.+.|+...|+..|+++..       ..|.+.++...
T Consensus        67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~----~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~  142 (146)
T PF03704_consen   67 RLAEALLEAGDYEEALRLLQRALALDPYDEE----AYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY  142 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHSTT-HH----HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence            4556788999999999999999997777655    999999999999999999999988752       24777777776


Q ss_pred             HHHH
Q 023865          246 ADLR  249 (276)
Q Consensus       246 KqLL  249 (276)
                      +.+|
T Consensus       143 ~~il  146 (146)
T PF03704_consen  143 REIL  146 (146)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            6654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.41  E-value=0.00068  Score=60.87  Aligned_cols=66  Identities=15%  Similarity=0.187  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      +...|..|..++..|+|..|+..|+.++...|.+    ..+++.|+..|...|+.++|+.+++.+. .+|+
T Consensus        35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~~  100 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPET----VELHLALGNLFRRRGEVDRAIRIHQNLL-SRPD  100 (389)
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCcHHHHHHHHHHHh-cCCC
Confidence            4456666777777777777777777777654432    2466667777777777777777777776 4543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.40  E-value=0.00087  Score=62.66  Aligned_cols=66  Identities=17%  Similarity=0.364  Sum_probs=32.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      .|+.+..+|..|+|..|.+.|-..+...|.++. -..+++||-.+|.+.|+.+.|..+|-...+.||
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~-~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P  209 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY-TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP  209 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc-cchhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence            555555555555555555555555554443322 234555555555444444444444433333333

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.39  E-value=0.0028  Score=51.34  Aligned_cols=66  Identities=23%  Similarity=0.240  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      .....|..|..++.+|+|..|+..|+.++... ++..+...+++.||..|...|+.++|+++++.+.
T Consensus        47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~  112 (145)
T PF09976_consen   47 AALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQIP  112 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Confidence            35567889999999999999999999999865 4556667899999999999999999999997754

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.33  E-value=0.002  Score=60.52  Aligned_cols=66  Identities=15%  Similarity=0.146  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ..++..|..||..|+|..||++|..++...|.+.    .+.+.++.+|...|+.++|+..|+.++...|+
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~----~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~   68 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA----ELYADRAQANIKLGNFTEAVADANKAIELDPS   68 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            3467789999999999999999999999777553    58899999999999999999999999877775

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.33  E-value=0.0018  Score=53.19  Aligned_cols=87  Identities=17%  Similarity=0.203  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHH
Q 023865          150 VRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALY  229 (276)
Q Consensus       150 v~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALC  229 (276)
                      ++..|.+..+ +......+...+..|...+.+|+|..|+.+|..++...+. +..-..+..-|+.+|...|+.++|+.+|
T Consensus        18 ~~~~l~~~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~   95 (168)
T CHL00033         18 VADILLRILP-TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKALEYY   95 (168)
T ss_pred             chhhhhHhcc-CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3444544432 3444456788899999999999999999999999987543 2222458889999999999999999999


Q ss_pred             HHHHHhCCC
Q 023865          230 KQLESNHPS  238 (276)
Q Consensus       230 Q~L~~~HPd  238 (276)
                      ++....+|.
T Consensus        96 ~~Al~~~~~  104 (168)
T CHL00033         96 FQALERNPF  104 (168)
T ss_pred             HHHHHhCcC
Confidence            998855554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.28  E-value=0.0027  Score=52.68  Aligned_cols=74  Identities=24%  Similarity=0.336  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ...+...|..|...+..|+|.+|+.+|+.++...+.. ..-..+...|+.+|...|+.++|+.+|++....+|+.
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  105 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP-NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ  105 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            4456678999999999999999999999999865432 2235689999999999999999999999999777764

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=97.28  E-value=0.0013  Score=62.47  Aligned_cols=68  Identities=24%  Similarity=0.166  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|..++.+|+|.+|+..|..++...|.    ..++++.|+.+|...|+.++|+..++.+...+|+.
T Consensus        22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~   89 (899)
T TIGR02917        22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN----DAEARFLLGKIYLALGDYAAAEKELRKALSLGYPK   89 (899)
T ss_pred             HHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh
Confidence            345788899999999999999999999885444    33689999999999999999999999988666654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.25  E-value=0.0017  Score=60.52  Aligned_cols=72  Identities=22%  Similarity=0.209  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +.+.++..++.|..-|++|+|.+|-..||+|++..|.+..    ++..||..|+..|+.+.|-.-|++-.+-+|+.
T Consensus        31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~----a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~  102 (250)
T COG3063          31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYL----AHLVRAHYYQKLGENDLADESYRKALSLAPNN  102 (250)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc
Confidence            3455777899999999999999999999999997666665    99999999999999999999999987677753

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.20  E-value=0.0026  Score=59.52  Aligned_cols=82  Identities=15%  Similarity=0.183  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq  247 (276)
                      +...|=.|+.-|.+|+|..|...|..++...|. ++--.++.+=|+++....|++++|-+.++++++++|+..-.+.|+.
T Consensus       178 ~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~-s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~  256 (262)
T COG1729         178 PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK-SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKV  256 (262)
T ss_pred             chhHHHHHHHHHhcccchHHHHHHHHHHHhCCC-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            346677899999999999999999999986654 4445689999999999999999999999999999999999999998


Q ss_pred             HHH
Q 023865          248 LRY  250 (276)
Q Consensus       248 LLy  250 (276)
                      .+.
T Consensus       257 ~~~  259 (262)
T COG1729         257 ALK  259 (262)
T ss_pred             HHh
Confidence            763

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.19  E-value=0.0019  Score=56.29  Aligned_cols=75  Identities=19%  Similarity=0.109  Sum_probs=44.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----CCHHHHHHHHHHHH
Q 023865          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH----PSKNIRRQAADLRY  250 (276)
Q Consensus       175 G~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H----Pd~qVRqQAKqLLy  250 (276)
                      |..-=.+|+|.+||..+..+..+.+ +.+   ++...++.+|-+.|+.+.|++.++.-+..+    -+.+++++|+.+|.
T Consensus        76 G~~~Q~~g~~~~AI~aY~~A~~L~~-ddp---~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~  151 (157)
T PRK15363         76 GECCQAQKHWGEAIYAYGRAAQIKI-DAP---QAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQ  151 (157)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCC-CCc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence            3333344555555555555544332 333   356666666666666666666666666556    56778888888877


Q ss_pred             hhc
Q 023865          251 ILQ  253 (276)
Q Consensus       251 ILE  253 (276)
                      .|.
T Consensus       152 ~l~  154 (157)
T PRK15363        152 QLS  154 (157)
T ss_pred             Hhh
Confidence            764

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.15  E-value=0.013  Score=50.90  Aligned_cols=69  Identities=19%  Similarity=0.205  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHH-HhcCC--HHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          168 AQLMFELGQKA-YGKGM--YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       168 ae~~yeaG~aA-LerGd--Y~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      ....+..|... +..|+  |.+|+++|++++...|.+..    +++.|+++|...|+.++||+.|+++.+..|...
T Consensus       107 ~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~----al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        107 AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVT----ALMLLASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChh----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            44556666653 56677  69999999999997777665    999999999999999999999999885665543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.10  E-value=0.0091  Score=47.27  Aligned_cols=67  Identities=22%  Similarity=0.239  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ...+..|...+..|+|..|+.+|+.++...+.+    ..+.+.++.+|...|+.++|+.++++.....|+.
T Consensus       136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  202 (234)
T TIGR02521       136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQR----PESLLELAELYYLRGQYKDARAYLERYQQTYNQT  202 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            345667888899999999999999999866543    3588899999999999999999999887554543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.08  E-value=0.0042  Score=61.23  Aligned_cols=69  Identities=19%  Similarity=0.134  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      .+.+....+.|..+|.+|+|..||..|++++...|.  +   .....++.+|...|+.++||..|...+...|+
T Consensus       124 ~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~--~---~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~  192 (615)
T TIGR00990       124 KKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD--P---VYYSNRAACHNALGDWEKVVEDTTAALELDPD  192 (615)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--h---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Confidence            345666777888888888888888888888886652  2   36777888888888888888888888755554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.01  E-value=0.0019  Score=47.65  Aligned_cols=58  Identities=24%  Similarity=0.394  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ  231 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~  231 (276)
                      .-.|..|...|..|+|.+||.+|.. ....+.+    ..+++.++.+|...|+.++||..++.
T Consensus        26 ~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~----~~~~~l~a~~~~~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   26 AYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN----PDIHYLLARCLLKLGKYEEAIKALEK   83 (84)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH----HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            3567789999999999999999998 4433322    46888999999999999999999874

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.95  E-value=0.0067  Score=52.97  Aligned_cols=79  Identities=9%  Similarity=0.034  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CHHHHHH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP-SKNIRRQ  244 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP-d~qVRqQ  244 (276)
                      ++.+..|.-|-..+++|+|..|+.+|+.+|...+.+..    -.|.|+.+|+..|+.++||..|..-..-.| +|..-..
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~----y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~  108 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD----YWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA  108 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence            45667999999999999999999999999998887777    899999999999999999999998764444 3444444


Q ss_pred             HHHH
Q 023865          245 AADL  248 (276)
Q Consensus       245 AKqL  248 (276)
                      +-..
T Consensus       109 ag~c  112 (157)
T PRK15363        109 AAEC  112 (157)
T ss_pred             HHHH
Confidence            4443

>PRK11189 lipoprotein NlpI; Provisional

Probab=96.94  E-value=0.0051  Score=55.82  Aligned_cols=69  Identities=16%  Similarity=0.084  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      +...+..|...+..|+|..|++.|+.++...|.+.    .+.+.++.+|...|+.++|+..|+.....+|+.-
T Consensus        98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~----~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189         98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN----YAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            45678889999999999999999999999766654    4899999999999999999999999988888754

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=96.85  E-value=0.0086  Score=53.85  Aligned_cols=70  Identities=24%  Similarity=0.296  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV  241 (276)
                      ...+..|...+.+|+|..|+++|+.++...+.+.   ..+...|+.+|...|+.++|+.+++.+...+|+..+
T Consensus       215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~  284 (389)
T PRK11788        215 RASILLGDLALAQGDYAAAIEALERVEEQDPEYL---SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL  284 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence            3455567777777777777777777776543322   245566677777777777777777776656666543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.77  E-value=0.01  Score=59.48  Aligned_cols=66  Identities=18%  Similarity=0.150  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES  234 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~  234 (276)
                      +...++.|.+-+..|+|..||+.|+.++++.|.+.. ...+.+.|+.+|...|+.++|++.+++-+.
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae-A~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE-AQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445788899999999999999999999997665432 123699999999999999999999999883

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.76  E-value=0.0031  Score=42.29  Aligned_cols=34  Identities=18%  Similarity=0.180  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          207 EIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      .+++.|+.+|...|+.++|+.+|+.+.+.+|+.-
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~   35 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP   35 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            4789999999999999999999999999999864

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=96.73  E-value=0.0043  Score=43.73  Aligned_cols=43  Identities=21%  Similarity=0.171  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 023865          209 QIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL  252 (276)
Q Consensus       209 QmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL  252 (276)
                      ++-||.||...|+.+.|..+-+.+. .++++..+..|+.||.-|
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl-~~~~~~q~~eA~~LL~~l   44 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVI-EEGDEAQRQEARALLAQL   44 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHH-HcCCHHHHHHHHHHHhcC
Confidence            5679999999999999999999999 899999999999998753

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=96.67  E-value=0.029  Score=48.75  Aligned_cols=68  Identities=15%  Similarity=0.119  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHH-HHHcCC--hHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMA-YEANNR--HADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtA-Yqa~Gq--~EkAIALCQ~L~~~HPd~  239 (276)
                      ++.-+..|...+..|+|..|+..|++++...|.+.    ++.+.++++ |...|+  .++|+.++++....+|+.
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~----~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~  143 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA----ELYAALATVLYYQAGQHMTPQTREMIDKALALDANE  143 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC
Confidence            55678889999999999999999999999777654    489999998 578888  599999999999888864

>TIGR00540 hemY_coli hemY protein

Probab=96.64  E-value=0.022  Score=53.82  Aligned_cols=70  Identities=17%  Similarity=0.064  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      .+...+..|..|+..|+|..|.+.+.++....+.+    .-..+..|.++...|+.+.|..+++...+.+|++.
T Consensus        83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~----~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~  152 (409)
T TIGR00540        83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP----VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN  152 (409)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc
Confidence            44455666666666666666666666655533221    23455556666666666666666666555556654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.60  E-value=0.013  Score=60.90  Aligned_cols=76  Identities=9%  Similarity=-0.101  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq  247 (276)
                      +...+..|..--+.|+|.+|++.|++++... +...   +++++++.+++..|+.++|.+.|++.+ ..-.+-+++.+..
T Consensus       154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~---~~~~~~a~~l~~~G~~~~A~~~~~~a~-~~~~~~~~~~~~~  228 (694)
T PRK15179        154 AREILLEAKSWDEIGQSEQADACFERLSRQH-PEFE---NGYVGWAQSLTRRGALWRARDVLQAGL-DAIGDGARKLTRR  228 (694)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhhCcchHHHHHH
Confidence            7788899999999999999999999999822 2333   699999999999999999999999999 4556666776666


Q ss_pred             H
Q 023865          248 L  248 (276)
Q Consensus       248 L  248 (276)
                      +
T Consensus       229 ~  229 (694)
T PRK15179        229 L  229 (694)
T ss_pred             H
Confidence            5

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.59  E-value=0.017  Score=58.59  Aligned_cols=67  Identities=15%  Similarity=0.159  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ...+..|...+.+|+|..|+..|+.++...|.+.    .+...|+.+|...|+.++|++.|+.+...+|+.
T Consensus       285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~----~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~  351 (656)
T PRK15174        285 RIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP----YVRAMYARALRQVGQYTAASDEFVQLAREKGVT  351 (656)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            3455667778888888888888888887654432    477778888888888888888888877677764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=96.56  E-value=0.01  Score=58.63  Aligned_cols=67  Identities=16%  Similarity=0.244  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ....+..|...+..|+|..|+..|++++...|.+.    .+.+.|+.+|...|+.++|+.+|+.....+|+
T Consensus       399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~  465 (615)
T TIGR00990       399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI----FSHIQLGVTQYKEGSIASSMATFRRCKKNFPE  465 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            45667778888888888888888888888665443    46778888888888888888888888767776

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=96.54  E-value=0.014  Score=62.73  Aligned_cols=72  Identities=18%  Similarity=0.146  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      ..+..-.|..|.....+|+|..|+..|+.|++..|.+    ..+.+.|+.+|...|+.++|+..|++..+.+|+..
T Consensus        41 ~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n----~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~  112 (987)
T PRK09782         41 HFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDN----IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDA  112 (987)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence            4556678899999999999999999999999977777    35889999999999999999999999997777543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.50  E-value=0.058  Score=46.55  Aligned_cols=79  Identities=16%  Similarity=0.233  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC---------------hHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR---------------HADCIALYKQL  232 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq---------------~EkAIALCQ~L  232 (276)
                      .+..|..|-+-|.+|+|..|+..++..+.++|.+-.. .-|.+...++|.....               ..+|...++.|
T Consensus        47 ~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~l  125 (142)
T PF13512_consen   47 EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQL  125 (142)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHH
Confidence            4567899999999999999999999999988866543 4588888999999887               89999999999


Q ss_pred             HHhCCCHHHHHHHHH
Q 023865          233 ESNHPSKNIRRQAAD  247 (276)
Q Consensus       233 ~~~HPd~qVRqQAKq  247 (276)
                      +.+||+++-...|+.
T Consensus       126 v~~yP~S~ya~dA~~  140 (142)
T PF13512_consen  126 VRRYPNSEYAADARK  140 (142)
T ss_pred             HHHCcCChhHHHHHh
Confidence            999999999888874

>PRK12370 invasion protein regulator; Provisional

Probab=96.49  E-value=0.012  Score=57.94  Aligned_cols=66  Identities=11%  Similarity=0.087  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ..+..|...+.+|+|.+|+..|++++...|.+.    .+.++|+.+|...|+.++|+..|+.....+|+.
T Consensus       340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~----~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~  405 (553)
T PRK12370        340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISA----DIKYYYGWNLFMAGQLEEALQTINECLKLDPTR  405 (553)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            344557777889999999999999998765544    378899999999999999999999988777874

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.46  E-value=0.019  Score=58.93  Aligned_cols=89  Identities=16%  Similarity=0.116  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq  247 (276)
                      ....+..|.....+|+|.+|++.|++++...|.+..    +.+.+++++.+.|+.++|.++++.++..+|+.-.-+.-++
T Consensus       393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~----l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~  468 (765)
T PRK10049        393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN----LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLAR  468 (765)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            345667788888899999999999999987765554    8888999999999999999999999999999888888888


Q ss_pred             HHHhhcCCCCCCC
Q 023865          248 LRYILQAPKLKIS  260 (276)
Q Consensus       248 LLyILEAPkLkrp  260 (276)
                      .+.+=.-|+|.+-
T Consensus       469 ~~~~~~~~~l~~~  481 (765)
T PRK10049        469 ARDVHHMAELRIA  481 (765)
T ss_pred             HHHhccCceEEEE
Confidence            8877777777544

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.43  E-value=0.03  Score=49.87  Aligned_cols=69  Identities=14%  Similarity=0.174  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      ...+..|...+++|+|.+|+++|++++...+.........++.++..|...|+.++|+.+|+++....|
T Consensus       149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            345667888999999999999999999877765555556677899999999999999999999763444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.38  E-value=0.011  Score=61.29  Aligned_cols=69  Identities=25%  Similarity=0.329  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC-----CCCC-chH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP-----RPTF-FGG-----EIQIWLAMAYEANNRHADCIALYKQLESN  235 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~-----~nS~-lGG-----EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~  235 (276)
                      +++..|+.+-.-++.|+|.+||++|+++..++.     ..+. .+.     -++..|+.+|+-.|++++|.++|..++++
T Consensus       174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~  253 (652)
T KOG2376|consen  174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR  253 (652)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence            588999999999999999999999999933222     2222 233     36778999999999999999999998843

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.34  E-value=0.041  Score=58.93  Aligned_cols=66  Identities=17%  Similarity=0.270  Sum_probs=57.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      ....|...+.+|+|.+|++.|++++...|.+.    .+.+.|+.+|...|+.++|+++|+++...+|+.-
T Consensus       464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~----~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~  529 (1157)
T PRK11447        464 LAQQAEALENQGKWAQAAELQRQRLALDPGSV----WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP  529 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            45578888999999999999999999766543    4899999999999999999999999987788643

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=96.34  E-value=0.027  Score=53.21  Aligned_cols=61  Identities=23%  Similarity=0.218  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      +...+..|..++.+|+|++|.++||++++..|.+     ...++|+.+|.+.|++++|..+|++=.
T Consensus       328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-----~~~~~La~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-----YDYAWLADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4567788999999999999999999999854332     356789999999999999999998654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.31  E-value=0.017  Score=58.58  Aligned_cols=69  Identities=10%  Similarity=0.104  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV  241 (276)
                      ...+..|..++.+|+|..|+..|+.++...|.+.    .+.+.++.+|...|+.++|++.|+.+...+|++..
T Consensus       111 ~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~----~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~  179 (656)
T PRK15174        111 EDVLLVASVLLKSKQYATVADLAEQAWLAFSGNS----QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD  179 (656)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH
Confidence            3456668888888888888888888888655443    47888888888888888888888887667776543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=96.28  E-value=0.023  Score=60.11  Aligned_cols=32  Identities=22%  Similarity=0.289  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          208 IQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       208 AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+|.+|...|+.++||.+|+++....|+.
T Consensus       104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n  135 (822)
T PRK14574        104 GLASAARAYRNEKRWDQALALWQSSLKKDPTN  135 (822)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            33444566666666666666666666666653

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.27  E-value=0.029  Score=53.47  Aligned_cols=64  Identities=16%  Similarity=0.179  Sum_probs=35.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      .+..|...+.+|+|..|+.+|+.++...|.+.    .+.+.++..|...|+.++|+..|++....+|+
T Consensus       162 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~  225 (899)
T TIGR02917       162 KLGLAQLALAENRFDEARALIDEVLTADPGNV----DALLLKGDLLLSLGNIELALAAYRKAIALRPN  225 (899)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence            34445555555555555555555555433322    35566666666666666666666665544443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11189 lipoprotein NlpI; Provisional

Probab=96.27  E-value=0.026  Score=51.33  Aligned_cols=69  Identities=19%  Similarity=0.216  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      +...|+.|......|++..|+..|.++++..|.+    ..+.+.++.+|...|+.++|+..|++..+..|+..
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~  132 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  132 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            4558889999999999999999999999976654    35999999999999999999999999987778754

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.25  E-value=0.045  Score=52.59  Aligned_cols=97  Identities=21%  Similarity=0.161  Sum_probs=68.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH----HHHHHH
Q 023865          174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR----QAADLR  249 (276)
Q Consensus       174 aG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRq----QAKqLL  249 (276)
                      .+.+-.+-|+|..||+=+|.++.+.|..++    +..-|-+||-+.|+.++||..|++-..-.|+-.+-+    +|.+.|
T Consensus       121 RAAAy~~Lg~~~~AVkDce~Al~iDp~ysk----ay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l  196 (304)
T KOG0553|consen  121 RAAAYSKLGEYEDAVKDCESALSIDPHYSK----AYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL  196 (304)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcChHHHH----HHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence            344556789999999999999997777766    777899999999999999999999886788877543    444444


Q ss_pred             HhhcCCCCCCCcccc---ccc-CCCCCCC
Q 023865          250 YILQAPKLKISQEEM---VTI-PLIGSSY  274 (276)
Q Consensus       250 yILEAPkLkrp~eW~---v~I-PdL~~~y  274 (276)
                      .....+.-.+....+   +.. |++...|
T Consensus       197 ~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~  225 (304)
T KOG0553|consen  197 NEPKSSAQASGSFDMAGLIGAFPDSRSMF  225 (304)
T ss_pred             cCCCcccccccchhhhhhccCCccchhhh
Confidence            444433333333333   233 6666555

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.25  E-value=0.031  Score=59.84  Aligned_cols=66  Identities=15%  Similarity=0.108  Sum_probs=57.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      .+..|..++.+|+|.+|++.|++++...|.+.    .+.+.|+.+|...|+.++|+..|++....+|+..
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~----~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~  419 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTDS----YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT  419 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            34568889999999999999999999876543    5899999999999999999999999987888754

>TIGR00540 hemY_coli hemY protein

Probab=96.21  E-value=0.049  Score=51.50  Aligned_cols=55  Identities=13%  Similarity=0.097  Sum_probs=29.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       175 G~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      +..++.+|+|.+|.+.|+...+..|.+.    .+..+++.+|...|+.+.|+.+.+.|.
T Consensus       160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~----~~l~ll~~~~~~~~d~~~a~~~l~~l~  214 (409)
T TIGR00540       160 TRILLAQNELHAARHGVDKLLEMAPRHK----EVLKLAEEAYIRSGAWQALDDIIDNMA  214 (409)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4444555555555555555555433332    255555555555555555555555555

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK12370 invasion protein regulator; Provisional

Probab=96.20  E-value=0.052  Score=53.61  Aligned_cols=64  Identities=19%  Similarity=0.209  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH  236 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H  236 (276)
                      ...+..|...+..|+|.+|+.+|+.++...|.+..    +.++++.+|...|+.++|+++|+.+...+
T Consensus       373 ~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~----~~~~~~~~~~~~g~~eeA~~~~~~~l~~~  436 (553)
T PRK12370        373 DIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA----AGITKLWITYYHTGIDDAIRLGDELRSQH  436 (553)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh----hHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence            34566788899999999999999999998776543    45566666777899999999999887554

>PRK15331 chaperone protein SicA; Provisional

Probab=96.19  E-value=0.017  Score=50.92  Aligned_cols=89  Identities=10%  Similarity=0.063  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCc--hH----------------------------HHHHHHHHH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF--GG----------------------------EIQIWLAMA  215 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~l--GG----------------------------EAQmwLAtA  215 (276)
                      ++.+..|..|-..|.+|+|..|..+|.-.|-..+.+.+.  |.                            ..-+.++.+
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC  114 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC  114 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence            345567777777788888877777777776655555442  00                            123344455


Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcC
Q 023865          216 YEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA  254 (276)
Q Consensus       216 Yqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEA  254 (276)
                      |...|+..+|+..++..+.+.-+..++++|+.+|..|..
T Consensus       115 ~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~~~L~~l~~  153 (165)
T PRK15331        115 QLLMRKAAKARQCFELVNERTEDESLRAKALVYLEALKT  153 (165)
T ss_pred             HHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHc
Confidence            555555555555566666667788999999999988753

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.17  E-value=0.017  Score=35.44  Aligned_cols=32  Identities=41%  Similarity=0.645  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPR  200 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~  200 (276)
                      +..+..|...+..|+|.+|++.|++++...|.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34556666666666666666666666665553

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=96.11  E-value=0.027  Score=49.54  Aligned_cols=78  Identities=21%  Similarity=0.066  Sum_probs=58.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP-SKNIRRQAADLR  249 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP-d~qVRqQAKqLL  249 (276)
                      ....+-..++.|+|.++.+.|..+....+.+..    ++..++.+|...|+.++|+.+++++.+.+| ||.+.-.=..+|
T Consensus       183 ~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~----~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l  258 (280)
T PF13429_consen  183 RNALAWLLIDMGDYDEAREALKRLLKAAPDDPD----LWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADAL  258 (280)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC----HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH----HHHHHHHHhcccccccccccccccccccccccccccccccccc
Confidence            334466677889999988888888876655554    778899999999999999999999997788 677776655555


Q ss_pred             Hhh
Q 023865          250 YIL  252 (276)
Q Consensus       250 yIL  252 (276)
                      ...
T Consensus       259 ~~~  261 (280)
T PF13429_consen  259 EQA  261 (280)
T ss_dssp             T--
T ss_pred             ccc
Confidence            443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.04  E-value=0.023  Score=58.99  Aligned_cols=61  Identities=10%  Similarity=0.046  Sum_probs=41.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       174 aG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      -+..-.+++.|.+|+...+.++...|.    ...+++.++++++..|++++|+++|+++...||+
T Consensus       126 ~a~~L~~~~~~eeA~~~~~~~l~~~p~----~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~  186 (694)
T PRK15179        126 MLRGVKRQQGIEAGRAEIELYFSGGSS----SAREILLEAKSWDEIGQSEQADACFERLSRQHPE  186 (694)
T ss_pred             HHHHHHHhccHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC
Confidence            344444555555555555555552222    2258999999999999999999999999977776

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.94  E-value=0.073  Score=50.31  Aligned_cols=62  Identities=26%  Similarity=0.332  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES  234 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~  234 (276)
                      ....+.....+.+|+|+.+++.|+..+...|-+.+    ++..|..+|..+|+...||..|++|.+
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~----~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEP----AYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH----HHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            33455667778899999999999999998888777    899999999999999999999999983

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=95.94  E-value=0.048  Score=45.22  Aligned_cols=67  Identities=18%  Similarity=0.316  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR--------------HADCIALYKQLE  233 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq--------------~EkAIALCQ~L~  233 (276)
                      +...+..|...+..|+|.+|+.+|++++...+.+    ..+...++.+|...|+              .++|+.+++...
T Consensus        72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~  147 (172)
T PRK02603         72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQ----PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI  147 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999999999999999999976654    3477788999988888              466777777776


Q ss_pred             HhCCC
Q 023865          234 SNHPS  238 (276)
Q Consensus       234 ~~HPd  238 (276)
                      ...|+
T Consensus       148 ~~~p~  152 (172)
T PRK02603        148 RLAPN  152 (172)
T ss_pred             hhCch
Confidence            44444

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=95.93  E-value=0.033  Score=57.15  Aligned_cols=65  Identities=17%  Similarity=-0.027  Sum_probs=58.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      .+..|.....+|++.+|++.|++++...|.+.    .+++.|++.|...|+.++|+++|++....+|+.
T Consensus       362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~----~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~  426 (765)
T PRK10049        362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ----GLRIDYASVLQARGWPRAAENELKKAEVLEPRN  426 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence            45677888899999999999999999877774    599999999999999999999999999889985

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=95.84  E-value=0.053  Score=58.44  Aligned_cols=67  Identities=16%  Similarity=0.110  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ....+..|....+.|+|.+|+..|+.++...|.+.    .+++.|+.+|...|+.++|+++|+.....+|+
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~----~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~  675 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS----NYQAALGYALWDSGDIAQSREMLERAHKGLPD  675 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            34455556666666666666666666666444333    35666666666666666666666655545554

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=95.74  E-value=0.056  Score=48.17  Aligned_cols=63  Identities=22%  Similarity=0.163  Sum_probs=54.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      ....|...+.+|+|..|++.++++++..|.+    ..+...|+.+|...|+.++|+.+|+......|
T Consensus       117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         117 LGMLAFGLEEAGQYDRAEEAARRALELNPDD----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            3456778899999999999999999977666    34888999999999999999999999885554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=95.70  E-value=0.035  Score=52.14  Aligned_cols=62  Identities=21%  Similarity=0.280  Sum_probs=55.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       174 aG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      .|+.++..|+|..||..|-++....|.+..    +.+.|.-||+..|+.+.|-.-|.+..+-.|+.
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~----~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~  167 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWE----AWNLLGAALDQLGRFDEARRAYRQALELAPNE  167 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhccCCCChh----hhhHHHHHHHHccChhHHHHHHHHHHHhccCC
Confidence            799999999999999999999996666655    99999999999999999999999988666653

>PRK14574 hmsH outer membrane protein; Provisional

Probab=95.69  E-value=0.056  Score=57.23  Aligned_cols=76  Identities=12%  Similarity=0.194  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR  249 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL  249 (276)
                      ..+..|......|+|+.||++|+++++..|.+.    .+.+.|+++|...|+.++|+..++++....|.  .+.. .-+.
T Consensus       104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~----~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~-l~la  176 (822)
T PRK14574        104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNP----DLISGMIMTQADAGRGGVVLKQATELAERDPT--VQNY-MTLS  176 (822)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHH-HHHH
Confidence            344456677788999999999999999888774    47789999999999999999999999977766  3333 5555


Q ss_pred             Hhh
Q 023865          250 YIL  252 (276)
Q Consensus       250 yIL  252 (276)
                      ++.
T Consensus       177 yL~  179 (822)
T PRK14574        177 YLN  179 (822)
T ss_pred             HHH
Confidence            555

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=95.59  E-value=0.23  Score=47.06  Aligned_cols=60  Identities=13%  Similarity=0.140  Sum_probs=43.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       174 aG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      .+..++.+|+|.+|++.++.+.+..|.+.    .+..+++.+|...|+.++|+.++..|.+..+
T Consensus       159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~----~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~  218 (398)
T PRK10747        159 RVRIQLARNENHAARHGVDKLLEVAPRHP----EVLRLAEQAYIRTGAWSSLLDILPSMAKAHV  218 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence            36677778888888888888777554443    3777788888888888888888888874443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=95.54  E-value=0.079  Score=52.16  Aligned_cols=84  Identities=26%  Similarity=0.222  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHH
Q 023865          145 EKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHAD  224 (276)
Q Consensus       145 ~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~Ek  224 (276)
                      +|.--+..+|++--. |..+.+.|+=..+.++.++.+-+.+.|+.+|.+|++..+...+    |-|.|...+.+.|++++
T Consensus       158 ~KAId~A~~L~k~~~-q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR----Asi~lG~v~~~~g~y~~  232 (389)
T COG2956         158 EKAIDVAERLVKLGG-QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR----ASIILGRVELAKGDYQK  232 (389)
T ss_pred             HHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee----hhhhhhHHHHhccchHH
Confidence            344444444443221 3444555666666666666666666666666666665555444    56666666666666666


Q ss_pred             HHHHHHHHH
Q 023865          225 CIALYKQLE  233 (276)
Q Consensus       225 AIALCQ~L~  233 (276)
                      |+..++.+.
T Consensus       233 AV~~~e~v~  241 (389)
T COG2956         233 AVEALERVL  241 (389)
T ss_pred             HHHHHHHHH
Confidence            666666666

>PRK15331 chaperone protein SicA; Provisional

Probab=95.41  E-value=0.052  Score=47.95  Aligned_cols=62  Identities=23%  Similarity=0.448  Sum_probs=35.1

Q ss_pred             HHHHHHHH--hcCCHHHHHHHHHHHhhhCC---CCCCchH----------HHHHHHHHHHHHcCCh---HHHHHHHHHHH
Q 023865          172 FELGQKAY--GKGMYGRAIEFLEGALTIIP---RPTFFGG----------EIQIWLAMAYEANNRH---ADCIALYKQLE  233 (276)
Q Consensus       172 yeaG~aAL--erGdY~qAIelLE~Al~~~~---~nS~lGG----------EAQmwLAtAYqa~Gq~---EkAIALCQ~L~  233 (276)
                      |-.|++|.  .+|+|..||..+--+..+..   ...-..|          .|+-.+-.|.....+.   ++|.++...|.
T Consensus        73 Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~~~L~~l~  152 (165)
T PRK15331         73 YTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAKALVYLEALK  152 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHH
Confidence            44566665  46899999999888775433   1122233          3444444455544432   35666666665

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=95.37  E-value=0.19  Score=41.38  Aligned_cols=59  Identities=15%  Similarity=0.174  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHH-------HcCChHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE-------ANNRHADCIALYK  230 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYq-------a~Gq~EkAIALCQ  230 (276)
                      +...+..|...+..|+|.+|+..++.++...+.+    +.....++.+|.       ..|+.+.|+..|.
T Consensus        72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~----~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~  137 (168)
T CHL00033         72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFL----PQALNNMAVICHYRGEQAIEQGDSEIAEAWFD  137 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence            3467889999999999999999999999875444    356777777777       8888885555554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=95.28  E-value=0.069  Score=52.32  Aligned_cols=62  Identities=16%  Similarity=0.123  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      +......+...+.+|+|..|++.+.+++...|..-.    .+..||.+|...|+.++|+.....+-
T Consensus       234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~----~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  234 SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFE----TWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHH----HHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            566777888899999999999999999996665544    99999999999999999997665443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.26  E-value=0.055  Score=33.10  Aligned_cols=32  Identities=19%  Similarity=0.282  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          207 EIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ++.+.|+.+|...|+.++|+..|++....+|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            57899999999999999999999999977775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=95.25  E-value=0.1  Score=40.32  Aligned_cols=77  Identities=12%  Similarity=0.034  Sum_probs=58.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhhCCCCCCch-----HHHHHHHHHHHHHcCChHHHHHHHHHHH---HhCCCHHHHHHHHH
Q 023865          176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFG-----GEIQIWLAMAYEANNRHADCIALYKQLE---SNHPSKNIRRQAAD  247 (276)
Q Consensus       176 ~aALerGdY~qAIelLE~Al~~~~~nS~lG-----GEAQmwLAtAYqa~Gq~EkAIALCQ~L~---~~HPd~qVRqQAKq  247 (276)
                      ..++..|+|..|++.|..+..........+     .-+.+.++..+...|+.++|+..++.-+   ....|...=.+|-.
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~   85 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALS   85 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            568999999999999999997766554433     4677889999999999999999998765   23445555555555


Q ss_pred             HHHhh
Q 023865          248 LRYIL  252 (276)
Q Consensus       248 LLyIL  252 (276)
                      .++.|
T Consensus        86 ~~~~l   90 (94)
T PF12862_consen   86 WLANL   90 (94)
T ss_pred             HHHHH
Confidence            55544

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=95.19  E-value=0.2  Score=41.37  Aligned_cols=63  Identities=21%  Similarity=0.338  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      ..+..|..-..-|+|.+|+..|+.++...|. ....+.++..+++++...|+.++|++++-...
T Consensus        40 a~i~lastlr~LG~~deA~~~L~~~~~~~p~-~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   40 ALIQLASTLRNLGRYDEALALLEEALEEFPD-DELNAALRVFLALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4677888889999999999999999986654 33456799999999999999999999998755

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=95.18  E-value=0.097  Score=52.52  Aligned_cols=74  Identities=18%  Similarity=0.103  Sum_probs=63.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR  249 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL  249 (276)
                      ....|..++.+|+|.+|+..|++|+..-+  +   ..+.++|+.+|.-.|+.++|+..|++-..-.|.....-|.+++.
T Consensus       423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~~~  496 (517)
T PRK10153        423 YEILAVQALVKGKTDEAYQAINKAIDLEM--S---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWIENLV  496 (517)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHhcc
Confidence            33468888899999999999999999765  2   35999999999999999999999988776889888888887764

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=95.13  E-value=0.059  Score=47.44  Aligned_cols=70  Identities=16%  Similarity=0.068  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH-PSKNI  241 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H-Pd~qV  241 (276)
                      +...+..|....+.|++..|+..|++++...|.+..    +...|+..|...|+.++|+.+++.+.+.. +++.+
T Consensus       146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~----~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~  216 (280)
T PF13429_consen  146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD----ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDL  216 (280)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH----HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHH
Confidence            444566777788888888888888888886666555    67777778888888888777777776553 33444

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.00  E-value=0.43  Score=38.13  Aligned_cols=74  Identities=19%  Similarity=0.126  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCch------------------HHHHHHHHHHHHHcCChHHHHHH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG------------------GEIQIWLAMAYEANNRHADCIAL  228 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lG------------------GEAQmwLAtAYqa~Gq~EkAIAL  228 (276)
                      .++.....|..+...|+-..+++.|+.++....+.--.|                  ..+...|+.+|...|+.++|+.+
T Consensus         5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~   84 (146)
T PF03704_consen    5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL   84 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            466678888999999999999999999998887553332                  25667788889999999999999


Q ss_pred             HHHHHHhCCCHH
Q 023865          229 YKQLESNHPSKN  240 (276)
Q Consensus       229 CQ~L~~~HPd~q  240 (276)
                      |+.++..+|..+
T Consensus        85 ~~~~l~~dP~~E   96 (146)
T PF03704_consen   85 LQRALALDPYDE   96 (146)
T ss_dssp             HHHHHHHSTT-H
T ss_pred             HHHHHhcCCCCH
Confidence            999998898755

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.94  E-value=0.48  Score=47.13  Aligned_cols=66  Identities=17%  Similarity=0.024  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ..++.+.--+..+.|..||++..+++...+.|..    +.+--.+||.+.|+.+.|+..+++.++-.|+.
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K----ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N  324 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK----ALYRRGQALLALGEYDLARDDFQKALKLEPSN  324 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh----HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence            3677788889999999999999999998888887    99999999999999999999999999788865

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.85  E-value=0.067  Score=33.25  Aligned_cols=31  Identities=29%  Similarity=0.597  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIP  199 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~  199 (276)
                      +..+..|..-+.+|+|.+||..|+.+++..|
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            4456677777777777777777777776655

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.53  E-value=0.65  Score=42.18  Aligned_cols=80  Identities=21%  Similarity=0.262  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhCC------CCCCch----HHHHHHHHHHHHHcCChH---HHHHHHH
Q 023865          165 RATAQLMFELGQKAYGKG-MYGRAIEFLEGALTIIP------RPTFFG----GEIQIWLAMAYEANNRHA---DCIALYK  230 (276)
Q Consensus       165 ~e~ae~~yeaG~aALerG-dY~qAIelLE~Al~~~~------~nS~lG----GEAQmwLAtAYqa~Gq~E---kAIALCQ  230 (276)
                      ...+...|+.|...+.++ +|..|+.||+.+.+..+      ..++.+    ..+...||+||-..|..+   +|+.+-+
T Consensus        32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~  111 (278)
T PF08631_consen   32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR  111 (278)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            456889999999999999 99999999999998842      334444    356678999999988754   5677777


Q ss_pred             HHHHhCCC-HHHHHH
Q 023865          231 QLESNHPS-KNIRRQ  244 (276)
Q Consensus       231 ~L~~~HPd-~qVRqQ  244 (276)
                      .+.+.||+ +.+.-.
T Consensus       112 ~l~~e~~~~~~~~~L  126 (278)
T PF08631_consen  112 LLESEYGNKPEVFLL  126 (278)
T ss_pred             HHHHhCCCCcHHHHH
Confidence            78778888 455433

It is also involved in sporulation [].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.47  E-value=0.079  Score=32.08  Aligned_cols=31  Identities=26%  Similarity=0.520  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPR  200 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~  200 (276)
                      ..|..|...+..|+|.+|++.|+.+++..|.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4789999999999999999999999998875

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=94.39  E-value=0.17  Score=51.04  Aligned_cols=63  Identities=19%  Similarity=0.160  Sum_probs=51.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       174 aG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      ...-..+.|+|.+|+++|+.....+.-..    .+.-..|..|...|+.++|..+|+.|++++|+.-
T Consensus        10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~----~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~   72 (517)
T PF12569_consen   10 KNSILEEAGDYEEALEHLEKNEKQILDKL----AVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY   72 (517)
T ss_pred             HHHHHHHCCCHHHHHHHHHhhhhhCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence            34455788999999999999666444333    3788899999999999999999999999998754

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.35  E-value=0.099  Score=34.97  Aligned_cols=41  Identities=22%  Similarity=0.096  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHH
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAM  214 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAt  214 (276)
                      ..+..|......|++++|++.|+++++..|.+..    +++.|+.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~----a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPE----AWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH----HHHHhhh
Confidence            4567789999999999999999999998876654    6666654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=94.32  E-value=0.22  Score=45.05  Aligned_cols=80  Identities=21%  Similarity=0.313  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHhc-CCHHHHHHHHHHHhhhCCC--CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH-HH
Q 023865          168 AQLMFELGQKAYGK-GMYGRAIEFLEGALTIIPR--PTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI-RR  243 (276)
Q Consensus       168 ae~~yeaG~aALer-GdY~qAIelLE~Al~~~~~--nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV-Rq  243 (276)
                      ++...+.|...-.. |+|..||++++.|+.....  ......+....++..|...|+.++||.+|+++...+-+..+ +-
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~  193 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY  193 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence            44555556655566 7999999999999987653  34556788889999999999999999999999855544332 33


Q ss_pred             HHHH
Q 023865          244 QAAD  247 (276)
Q Consensus       244 QAKq  247 (276)
                      .+++
T Consensus       194 ~~~~  197 (282)
T PF14938_consen  194 SAKE  197 (282)
T ss_dssp             HHHH
T ss_pred             hHHH
Confidence            4554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.18  E-value=0.49  Score=48.63  Aligned_cols=70  Identities=20%  Similarity=0.166  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +.++..-..|..+|..|+|+.||.++.+++...|.+-.    ..=-.|-||-..|....|++-|+.-++-+|+.
T Consensus       356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~----lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~  425 (539)
T KOG0548|consen  356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR----LYSNRAACYLKLGEYPEALKDAKKCIELDPNF  425 (539)
T ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH----HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH
Confidence            34666667799999999999999999999997765554    44557888999999999999888888666654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.87  E-value=0.06  Score=35.11  Aligned_cols=33  Identities=21%  Similarity=0.163  Sum_probs=28.2

Q ss_pred             HHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHH
Q 023865          191 LEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIA  227 (276)
Q Consensus       191 LE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIA  227 (276)
                      ++++++..|.+..    +...|+.+|...|+.++|++
T Consensus         2 y~kAie~~P~n~~----a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAE----AYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHH----HHHHHHHHHHHCcCHHhhcC
Confidence            5678887776665    99999999999999999974

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=93.66  E-value=0.14  Score=46.19  Aligned_cols=69  Identities=25%  Similarity=0.213  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC--CCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEAN-NRHADCIALYKQLESNH  236 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~--~nS~lGGEAQmwLAtAYqa~-Gq~EkAIALCQ~L~~~H  236 (276)
                      +-..|..+-..|.++++..||..|+.|+...-  ......+++..-++..|... |+.++||.+|++-.+-+
T Consensus        74 Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y  145 (282)
T PF14938_consen   74 AAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELY  145 (282)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            44567778888999999999999999998654  33455678899999999999 99999999999876433

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=93.59  E-value=0.78  Score=42.91  Aligned_cols=64  Identities=17%  Similarity=0.182  Sum_probs=37.0

Q ss_pred             HHHhcCCHHHHHHHHHHHhhhCC-CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH
Q 023865          177 KAYGKGMYGRAIEFLEGALTIIP-RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR  243 (276)
Q Consensus       177 aALerGdY~qAIelLE~Al~~~~-~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRq  243 (276)
                      +-|.-|+...|...||+..+..| ..|+   --.+.++++|.+.|+..+|-+-++.+++.+|+++-+-
T Consensus       133 Aqfa~~~~A~a~~tLe~l~e~~pa~r~p---d~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~  197 (251)
T COG4700         133 AQFAIQEFAAAQQTLEDLMEYNPAFRSP---DGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARI  197 (251)
T ss_pred             HHHhhccHHHHHHHHHHHhhcCCccCCC---CchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHH
Confidence            33334444444444444443333 1222   2456677777777777777777777777777777654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=93.56  E-value=0.3  Score=48.27  Aligned_cols=71  Identities=21%  Similarity=0.290  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV  241 (276)
                      +....-.|.-++.+|+|..||+.||.+++..+...   +++---|..||...|+.++.+..-+.-...++++.+
T Consensus       214 vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl---~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~  284 (389)
T COG2956         214 VRASIILGRVELAKGDYQKAVEALERVLEQNPEYL---SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA  284 (389)
T ss_pred             eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence            44567789999999999999999999998655443   578899999999999999998877776656666554

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=93.19  E-value=0.14  Score=40.16  Aligned_cols=52  Identities=13%  Similarity=0.053  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR  221 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq  221 (276)
                      ....|..+...+..|+|..|++.|-.++...+....  +.++-.|+..+...|.
T Consensus        22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~--~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen   22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYED--DAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC--CHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc--cHHHHHHHHHHHHcCC
Confidence            455666666666666666666666666654433333  2333333333333333

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=93.04  E-value=0.25  Score=30.44  Aligned_cols=31  Identities=32%  Similarity=0.555  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIP  199 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~  199 (276)
                      +..+..|..-...|+|..|+..|+++++..|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4456667777777777777777777776555

...

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=93.01  E-value=0.2  Score=53.87  Aligned_cols=61  Identities=28%  Similarity=0.414  Sum_probs=35.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       172 yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      |..|.=-.+.|.|.+|++.+++++...|.+.+    +++-|++-|+..|++++|...-.++.  .||
T Consensus       453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D----~Ri~Lasl~~~~g~~EkalEtL~~~~--~~D  513 (895)
T KOG2076|consen  453 YKLARCYMELGEYEEAIEFYEKVLILAPDNLD----ARITLASLYQQLGNHEKALETLEQII--NPD  513 (895)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh----hhhhHHHHHHhcCCHHHHHHHHhccc--CCC
Confidence            44455555666666666666666665555555    56666666666666666655555554  455

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=92.81  E-value=0.25  Score=34.34  Aligned_cols=29  Identities=24%  Similarity=0.242  Sum_probs=26.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          210 IWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       210 mwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      |-++.+|...|+.++|+.+|++++..+|+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~   29 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPD   29 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            46899999999999999999999988885

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.75  E-value=0.83  Score=44.13  Aligned_cols=75  Identities=21%  Similarity=0.257  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 023865          149 RVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIAL  228 (276)
Q Consensus       149 rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIAL  228 (276)
                      .||+=|.+..-.      .-+..+..+..+++.|+|..|...|..++...+.+    +.+.+.||.+|-..|+.+.|-++
T Consensus       121 qlr~~ld~~~~~------~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~----~~~~~~la~~~l~~g~~e~A~~i  190 (304)
T COG3118         121 QLRQFLDKVLPA------EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN----SEAKLLLAECLLAAGDVEAAQAI  190 (304)
T ss_pred             HHHHHHHHhcCh------HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc----chHHHHHHHHHHHcCChHHHHHH
Confidence            355555555552      22336778899999999999999999999977776    45999999999999999999999


Q ss_pred             HHHHH
Q 023865          229 YKQLE  233 (276)
Q Consensus       229 CQ~L~  233 (276)
                      +-+|-
T Consensus       191 L~~lP  195 (304)
T COG3118         191 LAALP  195 (304)
T ss_pred             HHhCc
Confidence            98876

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=92.72  E-value=1.3  Score=39.83  Aligned_cols=67  Identities=18%  Similarity=0.141  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~--~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      .....++.|..-|..|+|+.|+.+|++++....  .=..+-..+...|..++...|+.+..+++|=+|.
T Consensus       177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            355678899999999999999999999975443  2256667899999999999999999999999887

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=92.48  E-value=0.46  Score=51.26  Aligned_cols=68  Identities=16%  Similarity=0.220  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV  241 (276)
                      .++++-.+-.+|.+|++.+|..+|..++.+.|.+.-    +...|++.|+..|++++|.... .|. .|-+|+-
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~----ay~tL~~IyEqrGd~eK~l~~~-llA-AHL~p~d  206 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI----AYYTLGEIYEQRGDIEKALNFW-LLA-AHLNPKD  206 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh----hHHHHHHHHHHcccHHHHHHHH-HHH-HhcCCCC
Confidence            456788888899999999999999999998887765    9999999999999999997643 333 5777654

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=92.41  E-value=0.37  Score=41.22  Aligned_cols=53  Identities=26%  Similarity=0.243  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHAD  224 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~Ek  224 (276)
                      +...++.++++|..|+|+-|++++.-++...|.+.    +++-++|.||.+.|....
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~----~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNE----EARQLKADALEQLGYQSE  122 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H----HHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHHHhcc
Confidence            56789999999999999999999999998666554    499999999998886654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.11  E-value=0.5  Score=29.23  Aligned_cols=32  Identities=19%  Similarity=0.196  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          207 EIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ++.+.++.+|...|+.++|+..|++-++-.|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            57889999999999999999999998866664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=91.87  E-value=0.75  Score=36.74  Aligned_cols=63  Identities=19%  Similarity=0.084  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALY  229 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALC  229 (276)
                      -+++...+.|+..|.+-...+||....+++...... +.-=.+.=+|++||+--|+..++++..
T Consensus         4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~-~~rf~~lG~l~qA~~e~Gkyr~~L~fA   66 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDR-EDRFRVLGYLIQAHMEWGKYREMLAFA   66 (80)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999999865542 223366678999999999999998764

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>smart00028 TPR Tetratricopeptide repeats

Probab=91.73  E-value=0.42  Score=26.02  Aligned_cols=30  Identities=17%  Similarity=0.168  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          208 IQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       208 AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      +.+.++.+|...|+.++|+..++..++..|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            455666677777777777777666653333

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=91.64  E-value=1.8  Score=41.46  Aligned_cols=131  Identities=19%  Similarity=0.207  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---
Q 023865          105 MRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRA--TAQLMFELGQKAY---  179 (276)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e--~ae~~yeaG~aAL---  179 (276)
                      +.-+...+--..+.+..+..||.++..+-.+.++=.==-+-|-..=+-..+..|=..|.|+.  ..+...-.|.+-+   
T Consensus       125 ~~~~~a~~~~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a  204 (287)
T COG4235         125 LADPLAQPPAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA  204 (287)
T ss_pred             hhcccccCCCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            33344444445566666777777777666554443333333433333444444444454442  1222222222222   


Q ss_pred             hcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       180 erGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      .+-+=.++..+|.+++...+.+.+    ++++|+++|.-+|+..+|++..+.|.+.-|..
T Consensus       205 ~~~~ta~a~~ll~~al~~D~~~ir----al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         205 GQQMTAKARALLRQALALDPANIR----ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             CCcccHHHHHHHHHHHhcCCccHH----HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            233455677888888886666655    99999999999999999999999999766643

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.51  E-value=0.33  Score=31.43  Aligned_cols=25  Identities=20%  Similarity=0.179  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          209 QIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       209 QmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      ...|+.+|...|+.++||.+|++..
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4578999999999999999999843

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=91.05  E-value=0.88  Score=46.36  Aligned_cols=59  Identities=25%  Similarity=0.317  Sum_probs=35.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       175 G~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      |...++.+++.+|++.|.+++...|....    .++-++.+|...|+.++||.+-+..+...|
T Consensus       347 ~~i~~~~nk~~~A~e~~~kal~l~P~~~~----l~~~~a~all~~g~~~eai~~L~~~~~~~p  405 (484)
T COG4783         347 GDILLEANKAKEAIERLKKALALDPNSPL----LQLNLAQALLKGGKPQEAIRILNRYLFNDP  405 (484)
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCccH----HHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence            44556666666666666666665554422    566666666666666666666666653333

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=90.80  E-value=0.97  Score=46.58  Aligned_cols=71  Identities=18%  Similarity=0.214  Sum_probs=57.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchH------------------------------HHHHHHHHHHHHcC
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG------------------------------EIQIWLAMAYEANN  220 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGG------------------------------EAQmwLAtAYqa~G  220 (276)
                      .-+.|-+||..|||.+||.+|..++.+.|.|.-++.                              .+..-+.-|..+.|
T Consensus         5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg   84 (539)
T KOG0548|consen    5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG   84 (539)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence            446799999999999999999999999998755543                              45566778899999


Q ss_pred             ChHHHHHHHHHHHHhCCCHHH
Q 023865          221 RHADCIALYKQLESNHPSKNI  241 (276)
Q Consensus       221 q~EkAIALCQ~L~~~HPd~qV  241 (276)
                      +.++|+.-|..=.+.-|+-.+
T Consensus        85 ~~~eA~~ay~~GL~~d~~n~~  105 (539)
T KOG0548|consen   85 DYEEAILAYSEGLEKDPSNKQ  105 (539)
T ss_pred             cHHHHHHHHHHHhhcCCchHH
Confidence            999999999876546666543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=90.77  E-value=1.1  Score=44.86  Aligned_cols=63  Identities=24%  Similarity=0.265  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      +..-..+..|.-+|.++.|++|-++||.+++.-+..     ....||+-||.+.|+.++|-..++.-.
T Consensus       326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-----~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-----SDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-----hhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            345678889999999999999999999998855443     367999999999999999998887643

>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins

Probab=90.61  E-value=1.3  Score=35.45  Aligned_cols=56  Identities=25%  Similarity=0.160  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC
Q 023865          162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR  221 (276)
Q Consensus       162 a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq  221 (276)
                      ..+...+...+..|..|+.-|||..|-..+.++...    .+.-.-..+.-|+|=+..||
T Consensus        53 ~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~----~~~~~l~~L~AA~AA~~~gd  108 (108)
T PF07219_consen   53 RRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL----SDNPLLNYLLAARAAQAQGD  108 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcCC
Confidence            445566888999999999999999999999998664    22222355556666666664

These are membrane protein involved in a late step of protoheme IX synthesis [].

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=90.41  E-value=1  Score=45.67  Aligned_cols=66  Identities=21%  Similarity=0.179  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      .+..=+.|-.||.+|.|+.|-+.+..++.+.|.+...-....+-.|+++-..|+..+||+-|..-.
T Consensus       249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al  314 (486)
T KOG0550|consen  249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL  314 (486)
T ss_pred             HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence            344556799999999999999999999999999998888888889999999999999999998766

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=90.10  E-value=5.2  Score=37.82  Aligned_cols=88  Identities=25%  Similarity=0.132  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA  245 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQA  245 (276)
                      ..|...+..|.--+++|.|-.||--++.+++. -++|+.--++.++|.-||...|=++.|-..-+-|....|+.+   |.
T Consensus       165 ~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~---~~  240 (254)
T COG4105         165 ALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ---WY  240 (254)
T ss_pred             HHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc---ch
Confidence            44667888899999999999999999999986 566777789999999999999999999999999998888887   55


Q ss_pred             HHHHHhhcCCCC
Q 023865          246 ADLRYILQAPKL  257 (276)
Q Consensus       246 KqLLyILEAPkL  257 (276)
                      +.--.++..+.|
T Consensus       241 ~~~~~~~~~~~~  252 (254)
T COG4105         241 KDAYRLLQRGGL  252 (254)
T ss_pred             hhhhhccccccc
Confidence            554444444443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=89.99  E-value=1.9  Score=47.74  Aligned_cols=71  Identities=15%  Similarity=0.148  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-HADCIALYKQLESNHPSKNIR  242 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq-~EkAIALCQ~L~~~HPd~qVR  242 (276)
                      +++.+..++.|+...+|..||++.++++...|.|+.    +++.|-.||-.+|+ .++|-.-|..-.+--||.-+.
T Consensus         2 vK~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYn----A~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLA   73 (1238)
T KOG1127|consen    2 VKTALKSAKDALRNKEYEEALEQSKKVLKEDPDNYN----AQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLA   73 (1238)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcch----hhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHH
Confidence            467899999999999999999999999999999998    89999999999999 999999998877666765544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=89.66  E-value=0.75  Score=50.27  Aligned_cols=55  Identities=20%  Similarity=0.170  Sum_probs=27.2

Q ss_pred             HHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       178 ALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      -|-+|+|..|..+-+.++... .+...=.+..+||+++|.+.|+.++|...|++=+
T Consensus       280 fyfK~dy~~v~~la~~ai~~t-~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~  334 (1018)
T KOG2002|consen  280 FYFKKDYERVWHLAEHAIKNT-ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL  334 (1018)
T ss_pred             HhhcccHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            344555555555555555422 2222223445555555555555555555555544

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=89.57  E-value=1.9  Score=31.33  Aligned_cols=42  Identities=17%  Similarity=0.172  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 023865          208 IQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL  252 (276)
Q Consensus       208 AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL  252 (276)
                      -.++||.||.+.|+..+|...|..|.+..|+-.   ||+.|...+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~---Qa~~L~~~i   44 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR---QAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H---HHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH---HHHHHHHHH
Confidence            457899999999999999999999998888864   555555544

>smart00028 TPR Tetratricopeptide repeats

Probab=89.54  E-value=0.74  Score=24.99  Aligned_cols=30  Identities=33%  Similarity=0.604  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIP  199 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~  199 (276)
                      ..+..|...+..|+|..|+..|..++...+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            356789999999999999999999987554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=89.02  E-value=0.99  Score=27.70  Aligned_cols=31  Identities=16%  Similarity=0.228  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          207 EIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      ++.+.++..|...|+.++|+..+++..+-.|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5788999999999999999999999875444

...

>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane

Probab=88.60  E-value=1.1  Score=37.68  Aligned_cols=39  Identities=26%  Similarity=0.387  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC
Q 023865          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF  203 (276)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~  203 (276)
                      ..-+....+.|+..+.+|+|..|+.+|-.|+..++..+.
T Consensus        60 e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~   98 (121)
T PF02064_consen   60 ERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE   98 (121)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence            344778899999999999999999999999997776654

Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=88.56  E-value=2.3  Score=42.49  Aligned_cols=78  Identities=19%  Similarity=0.198  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCch-----------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 023865          163 ERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG-----------GEIQIWLAMAYEANNRHADCIALYKQ  231 (276)
Q Consensus       163 ~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lG-----------GEAQmwLAtAYqa~Gq~EkAIALCQ~  231 (276)
                      ++++.|...=+.|-.-|++|+|..|+..++.|+.........-           .-+.+-||++|-..++..+||..|-+
T Consensus       203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k  282 (397)
T KOG0543|consen  203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK  282 (397)
T ss_pred             HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence            4455555566677778888888888888888776665322221           13556789999999999999999998


Q ss_pred             HHHhCCCHHH
Q 023865          232 LESNHPSKNI  241 (276)
Q Consensus       232 L~~~HPd~qV  241 (276)
                      .. .+-...+
T Consensus       283 vL-e~~~~N~  291 (397)
T KOG0543|consen  283 VL-ELDPNNV  291 (397)
T ss_pred             HH-hcCCCch
Confidence            77 4544443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=88.54  E-value=0.97  Score=45.97  Aligned_cols=59  Identities=22%  Similarity=0.178  Sum_probs=52.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhhCC----CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023865          174 LGQKAYGKGMYGRAIEFLEGALTIIP----RPTFFGGEIQIWLAMAYEANNRHADCIALYKQL  232 (276)
Q Consensus       174 aG~aALerGdY~qAIelLE~Al~~~~----~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L  232 (276)
                      .|..-+.++.|.+||-+|++|+++..    ...+.-+-+..-|+.+|.+.|+..+|-.+|+.-
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A  309 (508)
T KOG1840|consen  247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA  309 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            56777889999999999999998766    778888999999999999999999998888753

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.52  E-value=1  Score=28.17  Aligned_cols=27  Identities=26%  Similarity=0.262  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          207 EIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      .++..|+.+|...|+.++|+.++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            367789999999999999999988876

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.27  E-value=0.71  Score=28.25  Aligned_cols=24  Identities=21%  Similarity=0.183  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHH
Q 023865          207 EIQIWLAMAYEANNRHADCIALYK  230 (276)
Q Consensus       207 EAQmwLAtAYqa~Gq~EkAIALCQ  230 (276)
                      .+.+.|+.+|...|+.++|.++++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            467889999999999999988876

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=87.65  E-value=7.5  Score=34.39  Aligned_cols=85  Identities=14%  Similarity=-0.033  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA  245 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQA  245 (276)
                      ...+..+-.|.-.+.+|+|..|+.+|..+.. ..+.++   -+.-.||.++...|+..==.--.+-|. ..+++..+.=.
T Consensus        42 ~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~-~~~~~p---~~kALlA~CL~~~~D~~Wr~~A~evle-~~~d~~a~~Lv  116 (160)
T PF09613_consen   42 EFPELDLFDGWLHIVRGDWDDALRLLRELEE-RAPGFP---YAKALLALCLYALGDPSWRRYADEVLE-SGADPDARALV  116 (160)
T ss_pred             CchHHHHHHHHHHHHhCCHHHHHHHHHHHhc-cCCCCh---HHHHHHHHHHHHcCChHHHHHHHHHHh-cCCChHHHHHH
Confidence            3456677789999999999999999999766 334444   377888889988888764444444555 78899998888


Q ss_pred             HHHHHhhcCC
Q 023865          246 ADLRYILQAP  255 (276)
Q Consensus       246 KqLLyILEAP  255 (276)
                      +.|+.+=+-+
T Consensus       117 ~~Ll~~~~~~  126 (160)
T PF09613_consen  117 RALLARADLE  126 (160)
T ss_pred             HHHHHhcccc
Confidence            8887664433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=87.53  E-value=1.7  Score=43.78  Aligned_cols=69  Identities=17%  Similarity=0.182  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ..++.+..+.+.+.|..|++--|+++...|.-+..--.+.-.|.++|..-|+.-+||.-|....+--|+
T Consensus       271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~  339 (504)
T KOG0624|consen  271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD  339 (504)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence            377888888889999999998888888666655544455566777888888888888888777744443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=87.39  E-value=2.3  Score=43.39  Aligned_cols=65  Identities=12%  Similarity=-0.004  Sum_probs=51.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023865          172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQLESNH  236 (276)
Q Consensus       172 yeaG~aALerGdY~qAIelLE~Al~~~~~nS~--lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H  236 (276)
                      ...|.....+|+|.+|+.+|+.++........  .=..+.++++.+|...|+.++|+...++-..-.
T Consensus       695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            46788889999999999999999986543322  224688999999999999999988877665333

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=87.26  E-value=5.6  Score=38.47  Aligned_cols=67  Identities=18%  Similarity=0.228  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH--cCChHHHHHHHHHHHHhCCC
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA--NNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa--~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ......+..+|.+++|+.|.++|+.++...+..-.  -+..-.|+.+|.+  ..++.+|....+.+. .+..
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~-~~~~  200 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLL-KRDK  200 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHhh
Confidence            44567788999999999999999999875333322  4677778888886  778999999999888 4433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=87.00  E-value=1.8  Score=26.97  Aligned_cols=32  Identities=34%  Similarity=0.440  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP  199 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~  199 (276)
                      +......|...+.+|+|.+|+.+++.++....
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   33 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRE   33 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence            45677889999999999999999999987543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=86.89  E-value=3.8  Score=37.25  Aligned_cols=64  Identities=20%  Similarity=0.266  Sum_probs=49.0

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023865          182 GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-----------HADCIALYKQLESNHPSKNIRRQAADLR  249 (276)
Q Consensus       182 GdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq-----------~EkAIALCQ~L~~~HPd~qVRqQAKqLL  249 (276)
                      ..|.+||+.|+.|+.+.|....    +.+.|..||...|.           .++|...+++-.+.-|+.++-+.+=++-
T Consensus        49 ~miedAisK~eeAL~I~P~~hd----Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   49 KMIEDAISKFEEALKINPNKHD----ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-HH----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCchHH----HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            3678899999999998777665    89999999988776           5778888888888889988887776653

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=86.75  E-value=2.8  Score=39.05  Aligned_cols=75  Identities=23%  Similarity=0.212  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCC-CHHHHHH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH-ADCIALYKQLESNHP-SKNIRRQ  244 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~-EkAIALCQ~L~~~HP-d~qVRqQ  244 (276)
                      +.....-.+..-+.+|+|..|.+.|+.++...+.    -..+.+-|++++.-.|+. +.+-.+-.+|...|| +|-+...
T Consensus       200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~----~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~  275 (290)
T PF04733_consen  200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN----DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL  275 (290)
T ss_dssp             SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC----HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence            3455556677888899999999999988864433    245888888888888888 666678888887788 5555554


Q ss_pred             H
Q 023865          245 A  245 (276)
Q Consensus       245 A  245 (276)
                      +
T Consensus       276 ~  276 (290)
T PF04733_consen  276 A  276 (290)
T ss_dssp             H
T ss_pred             H
Confidence            4

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=86.69  E-value=1.6  Score=28.23  Aligned_cols=27  Identities=37%  Similarity=0.592  Sum_probs=21.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhh
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTI  197 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~  197 (276)
                      ....|.....+|+|++||+++++++..
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            356788899999999999999996643

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=86.34  E-value=8.5  Score=36.22  Aligned_cols=91  Identities=22%  Similarity=0.192  Sum_probs=69.1

Q ss_pred             HHHHHHHHHH--HHHHHHHH---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC
Q 023865          146 KRMRVRRELE--KVAKEQAE---RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN  220 (276)
Q Consensus       146 ~~~rv~~~L~--~~a~~~a~---~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G  220 (276)
                      --|+++++|.  .--+|.++   +-.+.+..|..|.++.+-|+|.+|+.+++++++-.=...+   ++.+.||.|.-+.|
T Consensus        62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~---a~lLglA~Aqfa~~  138 (251)
T COG4700          62 LLMALQQKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA---AMLLGLAQAQFAIQ  138 (251)
T ss_pred             HHHHHHHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH---HHHHHHHHHHHhhc
Confidence            3455666653  22233333   3356788999999999999999999999999874444444   68889999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCH
Q 023865          221 RHADCIALYKQLESNHPSK  239 (276)
Q Consensus       221 q~EkAIALCQ~L~~~HPd~  239 (276)
                      +...|..+..+|-..||..
T Consensus       139 ~~A~a~~tLe~l~e~~pa~  157 (251)
T COG4700         139 EFAAAQQTLEDLMEYNPAF  157 (251)
T ss_pred             cHHHHHHHHHHHhhcCCcc
Confidence            9999999999998666543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=86.26  E-value=9.9  Score=27.58  Aligned_cols=62  Identities=29%  Similarity=0.419  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHH-HHHHcCChHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAM-AYEANNRHADCIALYKQLE  233 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAt-AYqa~Gq~EkAIALCQ~L~  233 (276)
                      ....+..|......++|..++..+..+....+.+    .....+... +|...|+.++|+..++...
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  157 (291)
T COG0457          95 AEALLNLGLLLEALGKYEEALELLEKALALDPDP----DLAEALLALGALYELGDYEEALELYEKAL  157 (291)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc----chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445556666666666777777777766544433    124444444 6777777777777777654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=85.68  E-value=2.5  Score=46.38  Aligned_cols=72  Identities=13%  Similarity=0.218  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      ..+...|..|..-..+|||..|-.++-.++...+.+.-+   ..+.|++-|...|+.+.|+..+.++.++.|+-.
T Consensus       305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l---~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~  376 (1018)
T KOG2002|consen  305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL---PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNY  376 (1018)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc---cccchhHHHHHhchHHHHHHHHHHHHHhCcchH
Confidence            347789999999999999999999999999877777444   777888889999999999999999998888754

>PRK04841 transcriptional regulator MalT; Provisional

Probab=85.63  E-value=7.4  Score=39.79  Aligned_cols=64  Identities=13%  Similarity=0.026  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCC----CchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT----FFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS----~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      ..+..|...+.+|+|..|.++++.++.......    .....+...++.+|...|+.++|.++|+...
T Consensus       533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al  600 (903)
T PRK04841        533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL  600 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence            345567788999999999999999887654321    2233445567778888899999988888764

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.58  E-value=1.6  Score=45.23  Aligned_cols=67  Identities=18%  Similarity=0.338  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ....|..|+--|--++|..||+=|++++.+.|.+--    +++.|+-|...+++.+.+...++.-++++|+
T Consensus       394 ~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~----~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~  460 (606)
T KOG0547|consen  394 PDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY----AYIQLCCALYRQHKIAESMKTFEEAKKKFPN  460 (606)
T ss_pred             CchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            345788899999999999999999999997776655    8899999999999999999999999999997

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=85.49  E-value=7.9  Score=34.27  Aligned_cols=85  Identities=16%  Similarity=0.108  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq  247 (276)
                      ....+-.|.-.+.+|+|..|+..|..+.. ...+++.   +.-.||.++.+.|+-.==.--..-|. ..++++...-.+.
T Consensus        44 ~e~d~~dg~l~i~rg~w~eA~rvlr~l~~-~~~~~p~---~kAL~A~CL~al~Dp~Wr~~A~~~le-~~~~~~a~~Lv~a  118 (153)
T TIGR02561        44 KELDMFDGWLLIARGNYDEAARILRELLS-SAGAPPY---GKALLALCLNAKGDAEWHVHADEVLA-RDADADAVALVRA  118 (153)
T ss_pred             cccchhHHHHHHHcCCHHHHHHHHHhhhc-cCCCchH---HHHHHHHHHHhcCChHHHHHHHHHHH-hCCCHhHHHHHHH
Confidence            44556678899999999999999999766 3444443   67788899999998775555556666 8889998888888


Q ss_pred             HHHhhcCCCC
Q 023865          248 LRYILQAPKL  257 (276)
Q Consensus       248 LLyILEAPkL  257 (276)
                      |+.+++.|.-
T Consensus       119 l~g~~~~~~s  128 (153)
T TIGR02561       119 LLGAQQPPAS  128 (153)
T ss_pred             HhccccCCcc
Confidence            8877777653

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.36  E-value=2.9  Score=43.45  Aligned_cols=66  Identities=21%  Similarity=0.283  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      |...=..|-..|..|.|.+||.++..|++.+|.-.-+    .--.+-+|...|+.++-|.-|-+-..-.|
T Consensus       115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF----YsNraAcY~~lgd~~~Vied~TkALEl~P  180 (606)
T KOG0547|consen  115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF----YSNRAACYESLGDWEKVIEDCTKALELNP  180 (606)
T ss_pred             HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh----hhhHHHHHHHHhhHHHHHHHHHHHhhcCc
Confidence            3344567999999999999999999999988874332    22356677777777777777765543333

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=84.95  E-value=26  Score=35.28  Aligned_cols=62  Identities=16%  Similarity=0.131  Sum_probs=54.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH  236 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H  236 (276)
                      .+..+...+.+|+|..|...+..+..+.|.+..    +.-..+.+|...|+-+...++-.+|.+.+
T Consensus       156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~----vlrLa~r~y~~~g~~~~ll~~l~~L~ka~  217 (400)
T COG3071         156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPE----VLRLALRAYIRLGAWQALLAILPKLRKAG  217 (400)
T ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChH----HHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence            566678889999999999999999997776665    99999999999999999999999998554

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=84.59  E-value=12  Score=37.97  Aligned_cols=113  Identities=20%  Similarity=0.186  Sum_probs=76.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023865          100 DWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAY  179 (276)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aAL  179 (276)
                      ||-...-+|---.-.|-+||.-+.....-+..+.+.     +            +..-|+++-.-..+-....+..+.|+
T Consensus       104 DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~-----~------------~~~eaqskl~~~~e~~~l~~ql~s~~  166 (504)
T KOG0624|consen  104 DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN-----G------------LVLEAQSKLALIQEHWVLVQQLKSAS  166 (504)
T ss_pred             cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc-----c------------hhHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            444444444444555667777666666666666652     2            22223333333444555667778899


Q ss_pred             hcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       180 erGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      ..|||..||+++..+++..+=.-    ..+..=|.+|.+-|+..+||.=-+...
T Consensus       167 ~~GD~~~ai~~i~~llEi~~Wda----~l~~~Rakc~i~~~e~k~AI~Dlk~as  216 (504)
T KOG0624|consen  167 GSGDCQNAIEMITHLLEIQPWDA----SLRQARAKCYIAEGEPKKAIHDLKQAS  216 (504)
T ss_pred             cCCchhhHHHHHHHHHhcCcchh----HHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            99999999999999999655444    477888899999999999998666554

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=84.42  E-value=17  Score=34.64  Aligned_cols=75  Identities=19%  Similarity=0.134  Sum_probs=49.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY  250 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy  250 (276)
                      ..+.|.+-+..+.+..||.-.-+++++-|.+-    .|..--|.||...-..++|+.=|++|...  +|..+ +|+.-..
T Consensus       137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~----kAl~RRAeayek~ek~eealeDyKki~E~--dPs~~-ear~~i~  209 (271)
T KOG4234|consen  137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYE----KALERRAEAYEKMEKYEEALEDYKKILES--DPSRR-EAREAIA  209 (271)
T ss_pred             HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CcchH-HHHHHHH
Confidence            34455555666666666666666666444333    35555688999999999999999999844  44444 6666544


Q ss_pred             hh
Q 023865          251 IL  252 (276)
Q Consensus       251 IL  252 (276)
                      -|
T Consensus       210 rl  211 (271)
T KOG4234|consen  210 RL  211 (271)
T ss_pred             hc
Confidence            44

>PRK11619 lytic murein transglycosylase; Provisional

Probab=84.25  E-value=8.2  Score=40.17  Aligned_cols=69  Identities=20%  Similarity=0.135  Sum_probs=49.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023865          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR  249 (276)
Q Consensus       175 G~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL  249 (276)
                      -..|+..|++.....++...    +.....-++.++|+++|+.+.|+.++|..+|+.+. + +..=--.-|..-|
T Consensus       319 ~r~Al~~~dw~~~~~~i~~L----~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a-~-~~~fYG~LAa~~L  387 (644)
T PRK11619        319 VRMALGTGDRRGLNTWLARL----PMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM-Q-QRGFYPMVAAQRL  387 (644)
T ss_pred             HHHHHHccCHHHHHHHHHhc----CHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh-c-CCCcHHHHHHHHc
Confidence            34688899998877777764    32223346799999999999999999999999997 3 4433334444443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=83.90  E-value=2.7  Score=29.43  Aligned_cols=34  Identities=29%  Similarity=0.435  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR  200 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~  200 (276)
                      .....+..|..-+..|+|..|++.|+.+++..|.
T Consensus        28 ~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~   61 (73)
T PF13371_consen   28 DPELWLQRARCLFQLGRYEEALEDLERALELSPD   61 (73)
T ss_pred             cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            3566788999999999999999999999997763

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=83.87  E-value=4.9  Score=41.59  Aligned_cols=80  Identities=20%  Similarity=0.194  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH---HHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK---NIRRQ  244 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~---qVRqQ  244 (276)
                      .++.+++|+..|.+-+..+..-.+=...  ....+....-+..-||++....|+.++||..++.|.+-+|.-   .|+.+
T Consensus       223 ~rqAvkAgE~~lg~s~~~~~~g~~~e~~--~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~Iren  300 (539)
T PF04184_consen  223 LRQAVKAGEASLGKSQFLQHHGHFWEAW--HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIREN  300 (539)
T ss_pred             HHHHHHHHHHhhchhhhhhcccchhhhh--hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHH
Confidence            4455666666666543333222221111  223444445566779999999999999999999998567753   35544


Q ss_pred             HHHHH
Q 023865          245 AADLR  249 (276)
Q Consensus       245 AKqLL  249 (276)
                      --..|
T Consensus       301 Lie~L  305 (539)
T PF04184_consen  301 LIEAL  305 (539)
T ss_pred             HHHHH
Confidence            33333

The molecular function of this protein is uncertain.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=83.86  E-value=4.1  Score=36.02  Aligned_cols=77  Identities=21%  Similarity=0.209  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHhc---CCHHHHHHHHHHHhh-hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHH
Q 023865          167 TAQLMFELGQKAYGK---GMYGRAIEFLEGALT-IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR  242 (276)
Q Consensus       167 ~ae~~yeaG~aALer---GdY~qAIelLE~Al~-~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVR  242 (276)
                      +.+..|+-+-+....   -+-++-|.+||..+. .+|...+   +--++||.+|...|+.++|+.+|..|.++-|+..  
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rR---e~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~--  105 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRR---ECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR--  105 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccch---hhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH--
Confidence            345566666555544   456788999999996 5555555   5789999999999999999999999997777764  


Q ss_pred             HHHHHHH
Q 023865          243 RQAADLR  249 (276)
Q Consensus       243 qQAKqLL  249 (276)
                       ||..|-
T Consensus       106 -Qa~~Lk  111 (149)
T KOG3364|consen  106 -QALELK  111 (149)
T ss_pred             -HHHHHH
Confidence             444443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=83.37  E-value=2.4  Score=29.46  Aligned_cols=33  Identities=36%  Similarity=0.469  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhCC
Q 023865          167 TAQLMFELGQKAYGKG-MYGRAIEFLEGALTIIP  199 (276)
Q Consensus       167 ~ae~~yeaG~aALerG-dY~qAIelLE~Al~~~~  199 (276)
                      .+...+..|..-+.+| +|.+|++.++++++..|
T Consensus        36 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   36 NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3557899999999999 79999999999998765

...

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=83.32  E-value=14  Score=35.19  Aligned_cols=71  Identities=17%  Similarity=0.148  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHH--HHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIW--LAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmw--LAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      +.+..+-..|-..|..|+|-.|...+-.|+..+|..+.. .+..++  =|-|....+..+.||.-|-+-+.-+|
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e-~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p  165 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTE-ERSILYSNRAAALIKLRKWESAIEDCSKAIELNP  165 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHH-HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc
Confidence            334455668999999999999999999999999987662 222222  26789999999999999988875666

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=83.22  E-value=13  Score=29.17  Aligned_cols=49  Identities=22%  Similarity=0.166  Sum_probs=39.6

Q ss_pred             HHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          187 AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       187 AIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      .|+-|++.++..|.+.    ++++.||.+|...|+.+.|+..+-.+.+++|+.
T Consensus         7 ~~~al~~~~a~~P~D~----~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAANPDDL----DARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHSTT-H----HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHcCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            4778888888666544    599999999999999999999999999777665

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=83.08  E-value=15  Score=26.60  Aligned_cols=58  Identities=24%  Similarity=0.375  Sum_probs=36.9

Q ss_pred             HHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       178 ALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ....|+|..|+..+..++...+..   ...+...+...|...|+.++|+..+.......|.
T Consensus       177 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         177 LEALGRYEEALELLEKALKLNPDD---DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HHHhcCHHHHHHHHHHHHhhCccc---chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            445667777777777766655443   3346666777777777777777777776644444

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=82.80  E-value=9.1  Score=37.82  Aligned_cols=71  Identities=14%  Similarity=0.026  Sum_probs=57.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA  246 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAK  246 (276)
                      .+-.+...+..++..+||+++..++...|.+    ..+....|..|...|+.+.|+.++++.+ ...-.+.+-|+.
T Consensus       203 ~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d----~~LL~~Qa~fLl~k~~~~lAL~iAk~av-~lsP~~f~~W~~  273 (395)
T PF09295_consen  203 AVLLARVYLLMNEEVEAIRLLNEALKENPQD----SELLNLQAEFLLSKKKYELALEIAKKAV-ELSPSEFETWYQ  273 (395)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCchhHHHHHH
Confidence            3445666777899999999999999866655    5577778888999999999999999999 565666777765

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=82.43  E-value=22  Score=36.14  Aligned_cols=94  Identities=17%  Similarity=0.147  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC-----CCCchHHHHHHHHHHHHHcCChHHHHHHHH--------HH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR-----PTFFGGEIQIWLAMAYEANNRHADCIALYK--------QL  232 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~-----nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ--------~L  232 (276)
                      -.+...+-.+..++-+|+|..|...++.+......     ....+..+.+..++-|++.|+.+.|...|+        ..
T Consensus       359 l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~  438 (608)
T PF10345_consen  359 LQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAA  438 (608)
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhh
Confidence            34667788899999999999999999988876543     245677899999999999999999999998        55


Q ss_pred             HHhCCCHHHHHHHH-HHHHhhcCCCCCC
Q 023865          233 ESNHPSKNIRRQAA-DLRYILQAPKLKI  259 (276)
Q Consensus       233 ~~~HPd~qVRqQAK-qLLyILEAPkLkr  259 (276)
                      ..+.+..++.--|. .+.-|+..|.=+.
T Consensus       439 ~~~~~~~El~ila~LNl~~I~~~~~~~~  466 (608)
T PF10345_consen  439 NRKSKFRELYILAALNLAIILQYESSRD  466 (608)
T ss_pred             ccCCcchHHHHHHHHHHHHHhHhhcccc
Confidence            45677777777766 3555666555433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=82.27  E-value=7.4  Score=40.56  Aligned_cols=65  Identities=15%  Similarity=0.148  Sum_probs=50.2

Q ss_pred             hcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023865          180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL  248 (276)
Q Consensus       180 erGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL  248 (276)
                      ++.-..+++.+.|-.+.    .+.......+.-|.-|.-.|++++|-++|+.|+.+||+.---.||++|
T Consensus        20 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (578)
T PRK15490         20 QEKKLAQAVALIDSELP----TEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDEARYEYARRL   84 (578)
T ss_pred             HHhhHHHHHHHHHHhCC----ccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcchHHHHHHHH
Confidence            34445556666665443    333344577888899999999999999999999999998888999987

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=82.07  E-value=2.4  Score=39.89  Aligned_cols=49  Identities=22%  Similarity=0.306  Sum_probs=41.7

Q ss_pred             cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       181 rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      ....-+||-+||.++...|.|.    ++++||+..|.-.|-...|..+|..|-
T Consensus       196 ~~~l~~Ai~lLE~~l~~s~~n~----~~~LlLvrlY~~LG~~~~A~~~~~~L~  244 (365)
T PF09797_consen  196 SEYLLQAIALLEHALKKSPHNY----QLKLLLVRLYSLLGAGSLALEHYESLD  244 (365)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHhcC
Confidence            4556689999999999554444    599999999999999999999999886

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=81.73  E-value=2.8  Score=43.73  Aligned_cols=56  Identities=21%  Similarity=0.389  Sum_probs=46.1

Q ss_pred             HhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          179 YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       179 LerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ++-.=...||.+||++.-+.|..+.    -||..|.++...|..++|..+|+.+-.++|.
T Consensus       637 idtqf~ekai~y~ekaaliqp~~~k----wqlmiasc~rrsgnyqka~d~yk~~hrkfpe  692 (840)
T KOG2003|consen  637 IDTQFSEKAINYFEKAALIQPNQSK----WQLMIASCFRRSGNYQKAFDLYKDIHRKFPE  692 (840)
T ss_pred             HhhHHHHHHHHHHHHHHhcCccHHH----HHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence            4445567899999997765555454    8999999999999999999999999878875

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=81.19  E-value=2.7  Score=44.27  Aligned_cols=60  Identities=17%  Similarity=0.177  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      ..|=.|...+++++|..|.=+|.+|+.+-|.++-    +.-.+-+.|...|+.++|+.+|.+-.
T Consensus       491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv----i~~~~g~~~~~~k~~d~AL~~~~~A~  550 (638)
T KOG1126|consen  491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV----ILCHIGRIQHQLKRKDKALQLYEKAI  550 (638)
T ss_pred             HHHhhhhheeccchhhHHHHHHHhhhcCCccchh----HHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence            4455588899999999999999999997777776    78888899999999999999998866

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=81.12  E-value=2.2  Score=29.46  Aligned_cols=34  Identities=29%  Similarity=0.299  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP  201 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n  201 (276)
                      ....+..|...+..|+|.+|.+.|+.++...|.+
T Consensus        25 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen   25 PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence            4567889999999999999999999999866664

...

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.74  E-value=5.6  Score=42.85  Aligned_cols=66  Identities=26%  Similarity=0.288  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      +..+++.|-.-.++|....|+.+++++++..|.-    ..+---|+..|+.+|..++||..|+.-+.--|
T Consensus       354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~----aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P  419 (966)
T KOG4626|consen  354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF----AAAHNNLASIYKQQGNLDDAIMCYKEALRIKP  419 (966)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh----hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence            7778888999999999999999999999855443    44788899999999999999999998873333

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=80.55  E-value=5  Score=40.97  Aligned_cols=61  Identities=18%  Similarity=0.238  Sum_probs=51.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhhC----CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          173 ELGQKAYGKGMYGRAIEFLEGALTII----PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       173 eaG~aALerGdY~qAIelLE~Al~~~----~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      ..|..-..+|+|..|+++++.|+...    ....+.-....++++.+|...|+..+|+-+|+.-.
T Consensus       204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL  268 (508)
T KOG1840|consen  204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL  268 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            38899999999999999999999762    23455556678899999999999999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-06
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 38/250 (15%), Positives = 74/250 (29%), Gaps = 77/250 (30%)

Query: 78  VDFDAGSSDEENG-----NGNGEKEEYDWE--KEMRRRV---KEIEEMRE---------- 117
           +DF+ G    +         +   + +D +  ++M + +   +EI+ +            
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 118 ----LEKKAEE----------------LQSKAEEDDSESEAKEETEEEKRMRVRRELEKV 157
               L  K EE                L S  + +  +         E+R R+  + +  
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 158 AKEQAERRATAQLMFELGQKAYG---------KGMYGR-----AIEFLEGALTIIPRPTF 203
           AK    R    Q   +L Q              G+ G      A++              
Sbjct: 127 AKYNVSRL---QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD----VCLSYKVQCK 179

Query: 204 FGGEIQIWLAMAYEANNRHADCI----ALYKQLESN-----HPSKNIRRQAAD----LRY 250
              +I  WL +     N     +     L  Q++ N       S NI+ +       LR 
Sbjct: 180 MDFKI-FWLNLKNC--NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 251 ILQAPKLKIS 260
           +L++   +  
Sbjct: 237 LLKSKPYENC 246

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 45.1 bits (106), Expect = 5e-06
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 101 WEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKE 160
           W +E R+R++E++     +   +E + KA++D  E   ++  + EK     R  +K   +
Sbjct: 90  WREEQRKRLQELDA--ASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQ 147

Query: 161 QAE 163
           Q +
Sbjct: 148 QPD 150

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 104 EMRRRVKEIEEMREL-EKKAEELQSK-AEEDDSESEAKEETEEEKRMRVRRELEKVAKEQ 161
           +  R  +E E +R+  E++ + LQ   A     E E +E+ +++     +R+ E+V K +
Sbjct: 76  QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135

Query: 162 AERRATAQ 169
              R   +
Sbjct: 136 INNRIADK 143

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 16/75 (21%), Positives = 31/75 (41%)

Query: 95  EKEEYDWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRREL 154
           ++E    + E R   +  +    LE K  +LQ K +E + E ++  E      +    E 
Sbjct: 903 KRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTET 962

Query: 155 EKVAKEQAERRATAQ 169
           EK+  +    R + +
Sbjct: 963 EKLRSDVERLRMSEE 977

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.83
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.78
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.59
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.53
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.49
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.48
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.44
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.44
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.43
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.43
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.42
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.42
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.39
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.38
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.32
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.32
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.28
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.27
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.27
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.26
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.24
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.24
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.23
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.22
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.21
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.2
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.2
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.19
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.19
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.18
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.15
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.15
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.14
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.13
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.13
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.12
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.1
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.1
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.07
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.06
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.03
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.01
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.0
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.0
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.98
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.98
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.96
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.96
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.95
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.95
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.92
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.9
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.9
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.89
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.88
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.86
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.83
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.81
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.79
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.78
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.75
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.74
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.73
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.71
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.71
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.7
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.7
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.69
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.69
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.69
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.68
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.67
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.66
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.65
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.64
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.63
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.63
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.63
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.62
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.61
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	97.6
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.59
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.58
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.58
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.56
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.56
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.53
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.53
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.53
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.52
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.5
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.49
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.48
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.47
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.47
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.46
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.45
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.45
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.45
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.43
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.43
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.4
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.4
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.39
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.38
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.36
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.35
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.34
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.32
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.3
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.3
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.28
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.26
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.25
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.25
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.23
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.22
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.22
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.21
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.19
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.19
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.17
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.17
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.14
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.1
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.07
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.06
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.04
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	97.0
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	96.99
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.99
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.99
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.98
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.95
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.93
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.9
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	96.9
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.89
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	96.88
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	96.88
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.86
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.85
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.83
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	96.76
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.73
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.73
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.64
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.61
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	96.6
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.53
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	96.52
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	96.5
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	96.5
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	96.5
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.5
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	96.43
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.43
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.38
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	96.34
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.33
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.28
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	96.26
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.25
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.25
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.21
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.16
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.14
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.09
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.87
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	95.84
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	95.83
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	95.83
4g1t_A	472	Interferon-induced protein with tetratricopeptide	95.75
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	95.73
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	95.7
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	95.65
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	95.42
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	95.36
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.2
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.19
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	95.11
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	94.9
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	94.88
4g1t_A	472	Interferon-induced protein with tetratricopeptide	94.57
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	94.53
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	93.87
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	93.31
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.16
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	93.03
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	92.74
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	92.66
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.41
1klx_A	138	Cysteine rich protein B; structural genomics, heli	90.47
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	90.41
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	88.32
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	88.25
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	87.8
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	87.58
2cfu_A	658	SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1	87.31
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	86.8
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	86.53
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	85.2
2p58_C	116	Putative type III secretion protein YSCG; type III	82.94
2xrh_A	100	Protein HP0721; unknown function; 1.50A {Helicobac	82.4
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	82.28
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	81.52
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	80.66

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.83  E-value=4.2e-08  Score=78.66  Aligned_cols=82  Identities=7%  Similarity=0.010  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD  247 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq  247 (276)
                      +...+..|...+..|+|.+||..|++++...|.+..    +.+.|+.+|...|+.++|+..|++....+|++.+++.|+.
T Consensus        70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~----~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~~~~A~~  145 (151)
T 3gyz_A           70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT----PVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQS  145 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            455677899999999999999999999998876654    9999999999999999999999999989999999999999


Q ss_pred             HHHhhc
Q 023865          248 LRYILQ  253 (276)
Q Consensus       248 LLyILE  253 (276)
                      +|..|+
T Consensus       146 ll~~l~  151 (151)
T 3gyz_A          146 YLDAIQ  151 (151)
T ss_dssp             HHHHHC
T ss_pred             HHHhhC
Confidence            999874

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.78  E-value=1.2e-07  Score=68.18  Aligned_cols=85  Identities=12%  Similarity=0.156  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL  248 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL  248 (276)
                      ...+..|...+..|+|..|+..|+.++...|.+ +....+.++++.+|...|+.++|+..|+.+...+|+......|...
T Consensus        40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~  118 (129)
T 2xev_A           40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTH-DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER  118 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            457888999999999999999999999976644 3346799999999999999999999999999999999999998888


Q ss_pred             HHhhcC
Q 023865          249 RYILQA  254 (276)
Q Consensus       249 LyILEA  254 (276)
                      |..|..
T Consensus       119 l~~l~~  124 (129)
T 2xev_A          119 LQSIRL  124 (129)
T ss_dssp             HHHHC-
T ss_pred             HHHHHh
Confidence            777653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.59  E-value=1.2e-06  Score=61.18  Aligned_cols=69  Identities=17%  Similarity=0.141  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      .+...+..|...+..|+|..|++.|++++...|.+    ..+.+.++.+|...|+.++|+..|++....+|+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            35567889999999999999999999999987655    4689999999999999999999999999788874

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.53  E-value=6.2e-07  Score=72.75  Aligned_cols=73  Identities=19%  Similarity=0.193  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV  241 (276)
                      +...|..|...+.+|+|.+||..|+.++...| .++....++++|+.+|...|+.++||..|+++++.+|+...
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~   76 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN   76 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence            56789999999999999999999999998655 45566789999999999999999999999999989998653

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.49  E-value=1.5e-06  Score=62.52  Aligned_cols=69  Identities=20%  Similarity=0.365  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ..|..|...+..|+|..|+..|+.++...|. +.....+.++++.+|...|+.++|+..|+.+...+|+.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH   72 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence            4688999999999999999999999987664 45556899999999999999999999999999888885

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.48  E-value=6.9e-07  Score=64.78  Aligned_cols=81  Identities=19%  Similarity=0.160  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES---NHPSKNIRRQ  244 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~---~HPd~qVRqQ  244 (276)
                      +...+..|...+..|+|.+|+.+|++++...|.+..    +.+.|+.+|...|+.++|+..|++...   .+++......
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVG----TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            345788999999999999999999999998776554    999999999999999999999998763   3566666666


Q ss_pred             HHHHHHhh
Q 023865          245 AADLRYIL  252 (276)
Q Consensus       245 AKqLLyIL  252 (276)
                      ...+|..+
T Consensus        83 l~~~l~~~   90 (100)
T 3ma5_A           83 LQDAKLKA   90 (100)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            66666544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.44  E-value=2.2e-06  Score=66.62  Aligned_cols=82  Identities=10%  Similarity=0.056  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----HHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS----KNIRR  243 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd----~qVRq  243 (276)
                      +...+..|...+..|+|..|+..|+.++...|.+.    .+.+.|+.+|...|+.++|+..|+......|+    ..++.
T Consensus        55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  130 (148)
T 2vgx_A           55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP----RFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST  130 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence            44567889999999999999999999999877654    48999999999999999999999999877777    67888


Q ss_pred             HHHHHHHhhc
Q 023865          244 QAADLRYILQ  253 (276)
Q Consensus       244 QAKqLLyILE  253 (276)
                      .|..+|..|.
T Consensus       131 ~~~~~l~~l~  140 (148)
T 2vgx_A          131 RVSSMLEAIK  140 (148)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHH
Confidence            8888887764

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.44  E-value=1.4e-06  Score=63.47  Aligned_cols=67  Identities=15%  Similarity=0.078  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      +...+..|...+.+|+|.+|+..|++++...|.+.    .+.+.++.+|...|+.++|+..|++.+..+|+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~   70 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA----RGYSNRAAALAKLMSFPEAIADCNKAIEKDPN   70 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            34455566666666666666666666666544332    35666666666666666666666665545554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.43  E-value=1.3e-06  Score=66.46  Aligned_cols=65  Identities=12%  Similarity=0.026  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ...+.|...|.+|+|.+||+.|++++...|.+.    .+.+.++.+|...|+.++||..|++.++-.|+
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   79 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA----ILYSNRAACLTKLMEFQRALDDCDTCIRLDSK   79 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence            344455555555555555555555555444332    24555555555555555555555554434443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.43  E-value=2.1e-06  Score=70.00  Aligned_cols=72  Identities=25%  Similarity=0.343  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      .+...|..|...+.+|+|.+||..|++++...| .++....+.++|+.+|...|+.++|+..|+.+++.+|+.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~   85 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID   85 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence            367789999999999999999999999999665 455567899999999999999999999999999888854

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.42  E-value=3.2e-06  Score=59.27  Aligned_cols=86  Identities=15%  Similarity=0.214  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCch---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG---GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lG---GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ  244 (276)
                      +...+..|...+..|+|..|+.+|+.++...+.+....   ..+.+.++.+|...|+.++|+..|+.....+|++.+...
T Consensus        38 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  117 (131)
T 1elr_A           38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK  117 (131)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHH
Confidence            34567889999999999999999999998776432221   678999999999999999999999999988999999888


Q ss_pred             HHHHHHhhc
Q 023865          245 AADLRYILQ  253 (276)
Q Consensus       245 AKqLLyILE  253 (276)
                      ...+...+.
T Consensus       118 l~~~~~~~~  126 (131)
T 1elr_A          118 CQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888776654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.42  E-value=1.9e-06  Score=65.10  Aligned_cols=82  Identities=10%  Similarity=0.041  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----CHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP----SKNIRR  243 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP----d~qVRq  243 (276)
                      +...+..|...+..|+|..|+..|+.++...|.+..    +.+.|+.+|...|+.++|+..|+.....+|    ...++.
T Consensus        52 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  127 (142)
T 2xcb_A           52 ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR----FPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA  127 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence            445677899999999999999999999998776544    899999999999999999999999886777    456777


Q ss_pred             HHHHHHHhhc
Q 023865          244 QAADLRYILQ  253 (276)
Q Consensus       244 QAKqLLyILE  253 (276)
                      .+..+|..|.
T Consensus       128 ~~~~~l~~l~  137 (142)
T 2xcb_A          128 RAGAMLEAVT  137 (142)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777776653

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.39  E-value=4.2e-06  Score=62.28  Aligned_cols=78  Identities=23%  Similarity=0.230  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC---CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP---TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n---S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ  244 (276)
                      +..-|..|..+|.+|+|.+||.+|+.|+...+..   ...-..+...|+.+|...|+.++|+.+++.+.+-.|+......
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4567899999999999999999999999876433   2334588999999999999999999999999878887655433


Q ss_pred             H
Q 023865          245 A  245 (276)
Q Consensus       245 A  245 (276)
                      .
T Consensus        85 n   85 (104)
T 2v5f_A           85 N   85 (104)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.38  E-value=3.4e-06  Score=68.76  Aligned_cols=84  Identities=21%  Similarity=0.252  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN----------NRHADCIALYKQLESNHP  237 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~----------Gq~EkAIALCQ~L~~~HP  237 (276)
                      ++..|..|...+.+|+|..||..|+.++...| +++...++.++|+.+|...          |+.++|+..|++++..+|
T Consensus       148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p  226 (261)
T 3qky_A          148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYP-DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP  226 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence            34478999999999999999999999998665 4555678999999999988          888999999999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q 023865          238 SKNIRRQAADLRYIL  252 (276)
Q Consensus       238 d~qVRqQAKqLLyIL  252 (276)
                      +......|..+|..+
T Consensus       227 ~~~~~~~a~~~l~~~  241 (261)
T 3qky_A          227 DSPLLRTAEELYTRA  241 (261)
T ss_dssp             TCTHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHH
Confidence            998888888776644

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.32  E-value=6.1e-06  Score=60.33  Aligned_cols=79  Identities=16%  Similarity=0.249  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH-HHHHHH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK-NIRRQA  245 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~-qVRqQA  245 (276)
                      .+...+..|...+..|+|.+|+..|++++...|.+    ..+.+.|+.+|...|+.++|+.+|++....+|+. .+....
T Consensus        26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  101 (117)
T 3k9i_A           26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH----QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYK  101 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            35567889999999999999999999999987766    4699999999999999999999999988677754 454444


Q ss_pred             HHHH
Q 023865          246 ADLR  249 (276)
Q Consensus       246 KqLL  249 (276)
                      +.+.
T Consensus       102 ~ai~  105 (117)
T 3k9i_A          102 QAIL  105 (117)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.32  E-value=5.6e-06  Score=62.56  Aligned_cols=79  Identities=8%  Similarity=0.117  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC---chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF---FGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~---lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ  244 (276)
                      +...+..|...+..|+|..||+.|++++...|.+..   .-+.+.+.|+.+|.+.|+.++||..|++-...+|++++.+.
T Consensus        42 ~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~  121 (127)
T 4gcn_A           42 ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKK  121 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred             HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHH
Confidence            445667788888888888888888888877664433   23567777888888888888888888886667888887665


Q ss_pred             HH
Q 023865          245 AA  246 (276)
Q Consensus       245 AK  246 (276)
                      -+
T Consensus       122 l~  123 (127)
T 4gcn_A          122 VK  123 (127)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.28  E-value=5.1e-06  Score=58.08  Aligned_cols=66  Identities=15%  Similarity=0.165  Sum_probs=58.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGE-IQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGE-AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      .|+.|...+..|+|..|+..|+.++...|.+    .. +.+.++.+|...|+.++|+..|++....+|+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   69 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP   69 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence            4788999999999999999999999976544    35 899999999999999999999999998888753

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.27  E-value=7.6e-06  Score=55.30  Aligned_cols=68  Identities=28%  Similarity=0.440  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+..|+|.+|+.+|++++...|.+    ..+.+.|+.+|...|+.++|+..|++....+|+.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~   76 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN   76 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            4567888999999999999999999999976654    4689999999999999999999999998777754

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.27  E-value=5.2e-06  Score=63.51  Aligned_cols=69  Identities=13%  Similarity=-0.009  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      +...+..|...+..|+|..|+..|+.++...|.+    ..+.+.|+.+|...|+.++|+..|++....+|+..
T Consensus        45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  113 (164)
T 3sz7_A           45 PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY----SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG  113 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence            4567788999999999999999999999977655    46899999999999999999999998887777653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.26  E-value=4.8e-06  Score=57.31  Aligned_cols=63  Identities=21%  Similarity=0.085  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      .+..|...+..|+|..|+..|+.++...|.+    ..+.+.++.+|...|+.++|+.+|+.....+|
T Consensus        41 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~  103 (118)
T 1elw_A           41 YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW----GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEA  103 (118)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence            3444555555555555555555555443321    23455555555555555555555555443333

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.24  E-value=6.4e-06  Score=62.16  Aligned_cols=68  Identities=10%  Similarity=0.120  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...|..|...+.+|+|.+|+.+|+.++...|.+.    .+.+.|+.+|...|+.++|+..|+..+...|+.
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   85 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA----RYFLGLGACRQSLGLYEQALQSYSYGALMDINE   85 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            45678899999999999999999999999776554    489999999999999999999999998777753

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.24  E-value=3.5e-06  Score=63.68  Aligned_cols=67  Identities=18%  Similarity=0.224  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      .|....+.|...|.+|+|.+||++|++++...|.+    ..+...++.+|...|+.++||..|++.+.-.|
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~----~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~   73 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR   73 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence            34455678999999999999999999999987765    35889999999999999999999998874433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.23  E-value=5.8e-06  Score=63.12  Aligned_cols=77  Identities=19%  Similarity=0.064  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH--HHHHHHH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK--NIRRQAA  246 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~--qVRqQAK  246 (276)
                      ...+..|...+..|+|..|+..++.++...|.+.    .+.+.++.+|...|+.++|+..|++.....|+.  .++..-.
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~  139 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNE----KALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK  139 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            4566778888888999999999999888765543    588899999999999999999998888777764  3444444


Q ss_pred             HHH
Q 023865          247 DLR  249 (276)
Q Consensus       247 qLL  249 (276)
                      .+.
T Consensus       140 ~~~  142 (162)
T 3rkv_A          140 IVT  142 (162)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.22  E-value=4.3e-06  Score=64.02  Aligned_cols=71  Identities=21%  Similarity=0.265  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      +++...+..|...+.+|+|..||+.|+++++..|.+.    .+.+.|+.+|...|+.++|+..|+.+...+|+..
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~   73 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV----ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA   73 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH
Confidence            4566788999999999999999999999999877653    5999999999999999999999999987887654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.21  E-value=6.9e-06  Score=65.73  Aligned_cols=68  Identities=15%  Similarity=0.067  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      .+...|..|...+.+|+|.+|+.+|++++...|.+..    +.+.|+.+|...|+.++||..|++.+...|+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~----~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD----YIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            3557899999999999999999999999997776544    8999999999999999999999999988887

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.20  E-value=6.7e-06  Score=61.83  Aligned_cols=62  Identities=16%  Similarity=0.101  Sum_probs=32.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       172 yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      |..|...+..|+|.+|+..|+.++...|.+.    .+.+.|+.+|...|+.++|+..|++.....|
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P   82 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKEPERE----EAWRSLGLTQAENEKDGLAIIALNHARMLDP   82 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4445555555555555555555555444332    2555555555555555555555555554444

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.20  E-value=5.4e-06  Score=59.86  Aligned_cols=81  Identities=16%  Similarity=0.207  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP---SKNIRRQ  244 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP---d~qVRqQ  244 (276)
                      +...+..|...+..|+|.+|+..|+.++...|.+    ..+.+.|+.+|...|+.++|+..|++.....|   +......
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   94 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY----SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKE   94 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHH
Confidence            4467888999999999999999999999977654    45899999999999999999999999875444   4444444


Q ss_pred             HHHHHHhh
Q 023865          245 AADLRYIL  252 (276)
Q Consensus       245 AKqLLyIL  252 (276)
                      ...+|..|
T Consensus        95 l~~~l~~l  102 (115)
T 2kat_A           95 LQVFLRRL  102 (115)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            44444433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.19  E-value=9.3e-06  Score=62.78  Aligned_cols=76  Identities=16%  Similarity=0.282  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQA  245 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQA  245 (276)
                      .....|..|...+..|+|..|+++|++++...|.+.    .+.+.|+.+|...|+.++|+..|++.++.+|+ +.+.-.-
T Consensus        30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  105 (150)
T 4ga2_A           30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP----KAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKI  105 (150)
T ss_dssp             HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            344567888899999999999999999998766553    58999999999999999999999998877885 4444333


Q ss_pred             H
Q 023865          246 A  246 (276)
Q Consensus       246 K  246 (276)
                      -
T Consensus       106 a  106 (150)
T 4ga2_A          106 A  106 (150)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.19  E-value=9.1e-06  Score=63.08  Aligned_cols=69  Identities=14%  Similarity=0.129  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      .+...+..|...+.+|+|..|+..|+.++...|.+.    .+.+.|+.+|...|+.++|+..|+..+...|+.
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   88 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS----RFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE   88 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            355678899999999999999999999999777654    488999999999999999999999998777753

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.18  E-value=1.1e-05  Score=58.51  Aligned_cols=66  Identities=12%  Similarity=-0.046  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      +...+..|...+..|+|..|+..|+.++...|.+    ..+.+.|+.+|...|+.++|+..|+......|
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p  108 (137)
T 3q49_B           43 AVYYTNRALCYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLEMESYDEAIANLQRAYSLAK  108 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence            3445556666666666666666666666654432    24666666666666666666666666654444

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.15  E-value=3.3e-05  Score=56.83  Aligned_cols=69  Identities=13%  Similarity=0.014  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      +...+..|...+..|+|..|+.+|++++...|.+    ..+.+.++.+|...|+.++|+.+|++....+|+..
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~  115 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK  115 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence            4556777888899999999999999999876544    35889999999999999999999999887777543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.15  E-value=3.5e-05  Score=55.66  Aligned_cols=67  Identities=15%  Similarity=-0.039  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ....+..|...+..|+|.+|+..|+.++...+.+    ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  131 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD----VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK  131 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            5566777888888888888888888888765543    457788888888888888888888887766665

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.14  E-value=1.9e-05  Score=57.39  Aligned_cols=65  Identities=15%  Similarity=-0.038  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH  236 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H  236 (276)
                      +...+..|...+..|+|..|+..|++++...|.+    ..+.+.++.+|...|+.++|+..|++....+
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           38 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF----VRAYIRKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            4567888999999999999999999999987665    4599999999999999999999999988677

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.13  E-value=1.8e-05  Score=55.37  Aligned_cols=68  Identities=21%  Similarity=0.176  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ++...+..|...+..|+|..|+.+|+.++...|.+    ..+.+.++.+|...|+.++|+.+|+.....+|+
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~   70 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE   70 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence            46678899999999999999999999999976554    468999999999999999999999998866553

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.13  E-value=4.7e-06  Score=67.15  Aligned_cols=69  Identities=23%  Similarity=0.439  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHH----------------HHHHHHHcCChHHHHHHHH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIW----------------LAMAYEANNRHADCIALYK  230 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmw----------------LAtAYqa~Gq~EkAIALCQ  230 (276)
                      .+...+..|..++..|+|.+|+..|++++...|.+    ..+.++                |+.+|...|+.++|+..|+
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~   78 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR----TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK   78 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH----HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            35668899999999999999999999999966543    458889                9999999999999999999


Q ss_pred             HHHHhCCCH
Q 023865          231 QLESNHPSK  239 (276)
Q Consensus       231 ~L~~~HPd~  239 (276)
                      +....+|+.
T Consensus        79 ~al~~~p~~   87 (208)
T 3urz_A           79 ELLQKAPNN   87 (208)
T ss_dssp             HHHHHCTTC
T ss_pred             HHHHHCCCC
Confidence            999888864

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.13  E-value=2.4e-05  Score=59.34  Aligned_cols=68  Identities=15%  Similarity=0.042  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+..|+|..||+.|++++...|.+.    .+.+.|+.+|...|+.++|+..|++..+-.|+.
T Consensus        47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~  114 (126)
T 4gco_A           47 AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI----KGYIRKAACLVAMREWSKAQRAYEDALQVDPSN  114 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence            55678889999999999999999999999876654    599999999999999999999999999888864

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.12  E-value=1.7e-05  Score=54.29  Aligned_cols=68  Identities=12%  Similarity=0.136  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCH
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-NRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~-Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ..+..|...+..|+|..|+++|++++...+.  ..-..+.+.|+.+|... |+.++|+..++.+...+|++
T Consensus        42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           42 YWLMKGKALYNLERYEEAVDCYNYVINVIED--EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC--TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            4567788888888888888888888886554  11246888888888888 88888888888888777753

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.10  E-value=7.1e-05  Score=54.03  Aligned_cols=71  Identities=13%  Similarity=0.040  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+.+|+|..|+.+|+.++...+.+ ..-..+.+.++.+|...|+.++|+.+|++....+|+.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   98 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATP-QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD   98 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence            4567889999999999999999999999876532 2235789999999999999999999999998788853

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.10  E-value=4.6e-05  Score=53.05  Aligned_cols=67  Identities=22%  Similarity=0.263  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      +...+..|...+..|+|..|+..|+.++...+.+    ..+.+.++.+|...|+.++|+.+++.....+|+
T Consensus        46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  112 (131)
T 2vyi_A           46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPD  112 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence            3455666777777888888888888877765443    357777777888888888888887777766664

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.08  E-value=2.6e-05  Score=53.32  Aligned_cols=64  Identities=17%  Similarity=0.267  Sum_probs=57.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      .+..|...+.+|+|.+|+..|++++...+.+    ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE----SKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            4567889999999999999999999976654    358999999999999999999999999977776

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.07  E-value=6.8e-05  Score=68.75  Aligned_cols=71  Identities=17%  Similarity=0.066  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHH
Q 023865          168 AQLMFELGQKAYGKGMY-GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR  242 (276)
Q Consensus       168 ae~~yeaG~aALerGdY-~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVR  242 (276)
                      +...+..|...+..|+| .+|+++|++++...|.+    ..+.+.|+.+|...|+.++|+.+|++.....|++.+.
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  173 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSL  173 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHH
Confidence            77889999999999999 99999999999977654    4599999999999999999999999999888885433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.07  E-value=2.5e-05  Score=55.21  Aligned_cols=68  Identities=16%  Similarity=0.012  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ....+..|...+..|+|..|+.+|+.++...+.+    ..+.+.++.+|...|+.++|+.+|++....+|+.
T Consensus        50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~  117 (133)
T 2lni_A           50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF----IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC  117 (133)
T ss_dssp             HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence            4556667777777888888888888877765442    3577777888888888888888887777566643

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.06  E-value=3.8e-05  Score=60.38  Aligned_cols=80  Identities=16%  Similarity=0.010  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQAAD  247 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQAKq  247 (276)
                      ...+..|...+..|+|..|+.+|+.++...|    .-..+.+.++.+|...|+.++|+..|++....+|+ +.+...-..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  164 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK----NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL  164 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence            4556677778888888888888888887532    23578888888888888888888888887767764 445544444


Q ss_pred             HHHhh
Q 023865          248 LRYIL  252 (276)
Q Consensus       248 LLyIL  252 (276)
                      ++..+
T Consensus       165 ~~~~~  169 (198)
T 2fbn_A          165 CVNKL  169 (198)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.06  E-value=8.1e-06  Score=61.37  Aligned_cols=67  Identities=18%  Similarity=0.166  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      +...+..|...+..|+|.+|+..|++++...|.+.    .+.+.|+.+|...|+.++|+..|++....+|+
T Consensus        51 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           51 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI----AVHAALAVSHTNEHNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            55678899999999999999999999999877654    49999999999999999999999999866665

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.04  E-value=3.8e-05  Score=58.51  Aligned_cols=47  Identities=15%  Similarity=0.053  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE  217 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYq  217 (276)
                      +...|..|...+..|+|..|+..|++++...|.+..   .++..|..+..
T Consensus        97 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~~l~~~~~  143 (162)
T 3rkv_A           97 EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS---VVAREMKIVTE  143 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHH---HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHH
Confidence            567888999999999999999999999998765542   24544544443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.03  E-value=0.0001  Score=51.26  Aligned_cols=70  Identities=17%  Similarity=0.141  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ..+...+..|...+..|+|..|+.+|++++...+.+    ..+.+.++.+|...|+.++|+.+|+.....+|+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   79 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY   79 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence            346678899999999999999999999999976654    4689999999999999999999999998788863

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.01  E-value=4.7e-05  Score=52.61  Aligned_cols=68  Identities=28%  Similarity=0.440  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ....+..|...+..|+|..|+.+|+.++...+.+    ..+.+.|+.+|...|+.++|+.+|+.....+|+.
T Consensus        43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  110 (125)
T 1na0_A           43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN  110 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            3445666777778888888888888877765443    3467777888888888888888888777666653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.00  E-value=3.6e-05  Score=52.86  Aligned_cols=68  Identities=16%  Similarity=0.120  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      .+...+..|...+..|+|..|+.+|+.++...|.+    ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   70 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD   70 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence            45678899999999999999999999999977654    458999999999999999999999999878886

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.00  E-value=1.8e-05  Score=60.48  Aligned_cols=67  Identities=21%  Similarity=0.276  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ....+..|...+..|+|.+||+.|++++...|.+    ..+.+.|+.+|...|+.++|+..|++..+.+|+
T Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A          107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF----IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred             hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh----hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence            4456778999999999999999999999977655    359999999999999999999999998855553

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.98  E-value=2.7e-05  Score=59.46  Aligned_cols=69  Identities=22%  Similarity=0.246  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ..+...+..|...+.+|+|..|+.+|++++...|.+    ..+.+.|+.+|...|+.++|+..|++.+..+|+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~   77 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK   77 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            356778999999999999999999999999987765    459999999999999999999999999988887

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.98  E-value=3.3e-05  Score=61.24  Aligned_cols=66  Identities=17%  Similarity=0.134  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ..+..|...+..|+|..|+.+|++++...|.    ...+.+.|+.+|...|+.++|+..|++..+.+|+.
T Consensus        44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  109 (228)
T 4i17_A           44 TAYNCGVCADNIKKYKEAADYFDIAIKKNYN----LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN  109 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            4455566666666666666666666654333    23466666666666666666666666666556553

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.96  E-value=8.1e-05  Score=58.51  Aligned_cols=62  Identities=15%  Similarity=0.106  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHH-HHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCI-ALYKQLE  233 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAI-ALCQ~L~  233 (276)
                      ....+..|...+..|+|..|+.+|+.++...|.+    ..++..|+.++...|+.+++. ..|+.+-
T Consensus       122 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          122 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNN----LDIRNSYELCVNKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567888999999999999999999999977655    359999999999999998888 6666665

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.96  E-value=4.2e-05  Score=55.34  Aligned_cols=68  Identities=18%  Similarity=0.101  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+..|+|..|+..|..++...|.+    ..+.+.++.+|...|+.++|+..|+.....+|+.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~   76 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQS   76 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence            5678899999999999999999999999987654    3599999999999999999999999999788873

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.95  E-value=4.1e-05  Score=61.99  Aligned_cols=77  Identities=12%  Similarity=0.097  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH------------------cCChHHHHHHHH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA------------------NNRHADCIALYK  230 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa------------------~Gq~EkAIALCQ  230 (276)
                      ...|..|...+..|+|..||..|+.++...|.+.. ...+.++++.+|..                  .|+.++|+..|+
T Consensus        42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~-~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  120 (225)
T 2yhc_A           42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS  120 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence            45788899999999999999999999997776543 45688999999876                  689999999999


Q ss_pred             HHHHhCCCHHHHHHHH
Q 023865          231 QLESNHPSKNIRRQAA  246 (276)
Q Consensus       231 ~L~~~HPd~qVRqQAK  246 (276)
                      ++++.+|+......|.
T Consensus       121 ~~l~~~P~~~~a~~a~  136 (225)
T 2yhc_A          121 KLVRGYPNSQYTTDAT  136 (225)
T ss_dssp             HHHTTCTTCTTHHHHH
T ss_pred             HHHHHCcCChhHHHHH
Confidence            9999999976555444

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.95  E-value=3.5e-05  Score=62.06  Aligned_cols=65  Identities=15%  Similarity=0.156  Sum_probs=58.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      .+..|...+..|+|..|+..|++++...|.+.    .+.+.|+.+|...|+.++|+..|++.+..+|+.
T Consensus        57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~  121 (208)
T 3urz_A           57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNV----DCLEACAEMQVCRGQEKDALRMYEKILQLEADN  121 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            45589999999999999999999999877654    599999999999999999999999999889874

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.92  E-value=0.00017  Score=49.80  Aligned_cols=68  Identities=28%  Similarity=0.440  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+..|+|..|+++|+.++...+.+    ..+.+.++.+|...|+.++|+.+|+.....+|+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   76 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN   76 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence            4557888999999999999999999999876543    3589999999999999999999999998777753

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.90  E-value=7.1e-05  Score=55.04  Aligned_cols=67  Identities=13%  Similarity=0.069  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      .+...+..|...+..|+|..|+.+|+.++...+.+    ..+.+.++.+|...|+.++|+.+|++....+|
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~   78 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDK   78 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            34445555555555555555555555555544332    23555555555555555555555555554444

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.90  E-value=3.8e-05  Score=62.21  Aligned_cols=67  Identities=27%  Similarity=0.320  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ...+..|...+.+|+|.+|+..|++++...|.+.    .+.+.|+.+|...|+.++|+..|++.+...|+.
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~   72 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDP----EALYWLARTQLKLGLVNPALENGKTLVARTPRY   72 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            4567889999999999999999999999766553    599999999999999999999999999888874

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.89  E-value=0.0001  Score=52.05  Aligned_cols=67  Identities=16%  Similarity=0.209  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ....+..|...+.+|+|..|+..|++++...+.+    ..+.+.++.+|...|+.++|+.+|++..+.+|+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~   82 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT   82 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC----HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            4567888999999999999999999999866554    569999999999999999999999999877776

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.88  E-value=7e-05  Score=64.67  Aligned_cols=70  Identities=14%  Similarity=0.158  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ...++..+..|..++.+|+|..|+..|+.++...| +    ..+.+.++.+|...|+.++|+..|+.....+|+.
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~   72 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-D----PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY   72 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-c----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH
Confidence            44566677777777777777777777777777654 2    4567777777777777777777777766666654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.86  E-value=4.3e-05  Score=65.00  Aligned_cols=70  Identities=20%  Similarity=0.219  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR  242 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVR  242 (276)
                      ...+..|..++.+|+|.+|++.|++++...|.+.    .+++.|+.+|...|+.++|+++|+++...+|++...
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~  187 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG----EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ  187 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch----hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH
Confidence            3467889999999999999999999999877664    599999999999999999999999998788876544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.83  E-value=0.00027  Score=54.83  Aligned_cols=75  Identities=20%  Similarity=0.196  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCC------------CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT------------FFGGEIQIWLAMAYEANNRHADCIALYKQLESN  235 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS------------~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~  235 (276)
                      +...+..|...+..|+|..|++.|+.++...+.+.            +....+.+.++.+|...|+.++|+..|+.....
T Consensus        71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            45678889999999999999999999999877654            344589999999999999999999999999988


Q ss_pred             CCCHHHH
Q 023865          236 HPSKNIR  242 (276)
Q Consensus       236 HPd~qVR  242 (276)
                      +|+....
T Consensus       151 ~p~~~~~  157 (213)
T 1hh8_A          151 KSEPRHS  157 (213)
T ss_dssp             CCSGGGG
T ss_pred             Ccccccc
Confidence            8876543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.81  E-value=2.2e-05  Score=61.02  Aligned_cols=68  Identities=6%  Similarity=0.057  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV  241 (276)
                      ..+..|...+..|+|.+|+..|++++...|.+.    .+.+.|+.+|...|+.++|+.+|+.+...+|++.+
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~   75 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRG----DVKLAKADCLLETKQFELAQELLATIPLEYQDNSY   75 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH----HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHH
Confidence            467889999999999999999999999776654    49999999999999999999999999877775544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.79  E-value=0.00037  Score=56.60  Aligned_cols=63  Identities=11%  Similarity=0.221  Sum_probs=28.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       175 G~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      |...+..|+|.+|+..|+.++...|.+...-..+.+.++.+|...|+.++|+.+|++..+.+|
T Consensus       241 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  303 (359)
T 3ieg_A          241 AEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP  303 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            444444455555555555544444433332233344444444444444444444444443344

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.78  E-value=0.0001  Score=59.89  Aligned_cols=66  Identities=9%  Similarity=0.043  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      ....+..|...+..|+|..|+..|+.++...|.+.    .+.+.++.+|...|+.++|+.+|++..+.+|
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           37 YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT----AARLQRGHLLLKQGKLDEAEDDFKKVLKSNP  102 (359)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence            44566667777777777777777777777544332    4777777777777777777777777775555

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.75  E-value=5.5e-05  Score=66.14  Aligned_cols=70  Identities=14%  Similarity=0.195  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ...+...+..|...+.+|+|..|+..|+.++...|.+    ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus        22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~   91 (537)
T 3fp2_A           22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE----PVFYSNISACYISTGDLEKVIEFTTKALEIKPD   91 (537)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            3456667777777777777777777777777766544    247777777777777777777777777766665

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.74  E-value=0.00028  Score=48.70  Aligned_cols=65  Identities=29%  Similarity=0.459  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ..+..|...+..|+|..|+.+|+.++...+.+    ..+.+.++.+|...|+.++|+.+++......|+
T Consensus        71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            34555666677777777777777777654433    346666777777777777777777766644443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.73  E-value=0.00012  Score=58.11  Aligned_cols=69  Identities=9%  Similarity=0.031  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+.+|+|.+|+..|++++...|....   .+.++++.+|...|+.++|+..|++....+|+.
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   75 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS---VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL   75 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch
Confidence            356889999999999999999999999998873333   588999999999999999999999999778864

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.71  E-value=0.00039  Score=52.96  Aligned_cols=63  Identities=19%  Similarity=0.136  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-NRHADCIALYKQLES  234 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~-Gq~EkAIALCQ~L~~  234 (276)
                      ....+..|...+..|+|..|+.+|+.++...+.+    ..+.+.++.+|... |+.++|+.+|+....
T Consensus        42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~  105 (225)
T 2vq2_A           42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS----AEINNNYGWFLCGRLNRPAESMAYFDKALA  105 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence            3344555666666666666666666666654433    23666666666666 666667666666663

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.71  E-value=0.00016  Score=56.27  Aligned_cols=68  Identities=16%  Similarity=0.038  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ..++..+..|...+.+|+|.+|+.+|+.++...  ..   ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~   70 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE   70 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence            357788999999999999999999999999977  33   369999999999999999999999998865553

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.70  E-value=0.00022  Score=56.52  Aligned_cols=69  Identities=14%  Similarity=0.125  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      ....+..|...+..|+|..|+.+|++++...|.+.    .+.+.|+.+|...|+.++|+.+|++....+|+..
T Consensus        77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A           77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN----YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            45667788999999999999999999999776654    5899999999999999999999999987788765

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.70  E-value=0.00039  Score=55.31  Aligned_cols=66  Identities=15%  Similarity=0.045  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      +...+..|...+..|+|..|+.+|++++...+.+...-..+.+.|+.+|...|+.++|+.+|++..
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   70 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL   70 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            455677888899999999999999998887666554446788888899999999999998888754

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.69  E-value=0.00013  Score=58.07  Aligned_cols=68  Identities=10%  Similarity=0.006  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ..+..|...+..|+|.+|+..|+.++. .+.+...-..+.+.++.+|...|+.++|+..|++..+.+|+
T Consensus        39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~  106 (272)
T 3u4t_A           39 IYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT  106 (272)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc
Confidence            455666677777777777777777776 44444545666777777777777777777777777755554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.69  E-value=0.00011  Score=62.38  Aligned_cols=68  Identities=12%  Similarity=-0.037  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+..|+|..|+..|++++...|.+    ..+.+.|+.+|...|+.++|+..|++....+|+.
T Consensus        38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           38 AVYYTNRALCYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            5567778888999999999999999999865544    3588999999999999999999998877566644

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.69  E-value=0.00021  Score=55.43  Aligned_cols=67  Identities=10%  Similarity=-0.026  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      +...+..|...+..|+|..|+.+|+.++...|.+    ..+.+.++.+|...|+.++|+..|++....+|.
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~  103 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG  103 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Confidence            3467888999999999999999999999976544    468999999999999999999999999866665

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.68  E-value=0.00018  Score=49.71  Aligned_cols=67  Identities=30%  Similarity=0.466  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ....+..|...+..|+|..|+.+|+.++...+.+    ..+.+.++.+|...|+.++|+.+++.....+|+
T Consensus        35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  101 (136)
T 2fo7_A           35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  101 (136)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            4456677888899999999999999998865543    357888999999999999999999998867775

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.67  E-value=0.00023  Score=57.57  Aligned_cols=68  Identities=26%  Similarity=0.215  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      +...+..|...+..|+|.+|++.|++++...  ..   ..+.+.|+.+|...|+.++|+..|++....+|+..
T Consensus       118 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  185 (217)
T 2pl2_A          118 APLHLQRGLVYALLGERDKAEASLKQALALE--DT---PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL  185 (217)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            4556788999999999999999999999977  33   36999999999999999999999999998888654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.66  E-value=0.00033  Score=63.11  Aligned_cols=82  Identities=15%  Similarity=0.151  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQ  244 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQ  244 (276)
                      ..+...+..|...+..|+|..|+.++++++...|.+    ..+.+.++.+|...|+.++|+..|++..+..|+ +.+...
T Consensus       271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~  346 (370)
T 1ihg_A          271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN----TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE  346 (370)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            346678899999999999999999999999976644    469999999999999999999999998878884 555555


Q ss_pred             HHHHHHh
Q 023865          245 AADLRYI  251 (276)
Q Consensus       245 AKqLLyI  251 (276)
                      -..++..
T Consensus       347 l~~~~~~  353 (370)
T 1ihg_A          347 LLKVKQK  353 (370)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.65  E-value=0.00033  Score=55.81  Aligned_cols=66  Identities=11%  Similarity=0.008  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ..+..|...+..|+|..|+..|++++...|.+.    .+...|+.+|...|+.++|+..|++....+|+.
T Consensus        76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  141 (272)
T 3u4t_A           76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL----DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD  141 (272)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence            367889999999999999999999999777654    489999999999999999999999988666654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.64  E-value=0.00036  Score=55.28  Aligned_cols=67  Identities=21%  Similarity=0.249  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      +...+..|...+..|+|..|+.+|++++...|.+    ..+.+.|+.+|...|+.++|+.+|++....+|+
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~  109 (275)
T 1xnf_A           43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT  109 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc
Confidence            4445566666666666666666666666654432    236666666666666666666666666655553

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.63  E-value=0.00072  Score=52.60  Aligned_cols=67  Identities=15%  Similarity=0.077  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      +...+..|...+..|+|..|+..|+.++...|.+    ..+.+.|+.+|...|+.++|+..|+.....+|+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  205 (258)
T 3uq3_A          139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN  205 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence            4566778888888888888888888888866554    358888888888888888888888888766766

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.63  E-value=0.00061  Score=59.66  Aligned_cols=68  Identities=16%  Similarity=0.006  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+..|+|.+|+..|++++...|.+    ..+.+.++.+|...|+.++|+..|++....+|+.
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  263 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNN----EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN  263 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence            5667889999999999999999999999987665    3599999999999999999999999998788864

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.63  E-value=0.00034  Score=51.32  Aligned_cols=64  Identities=25%  Similarity=0.440  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      ..+..|...+..|+|..|+.+|+.++...+.+    ..+.+.|+.+|...|+.++|+.+|+.....+|
T Consensus       112 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  175 (186)
T 3as5_A          112 VRFRLGVALDNLGRFDEAIDSFKIALGLRPNE----GKVHRAIAFSYEQMGRHEEALPHFKKANELDE  175 (186)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            34555666666666666666666666654332    34666666666666666666666666554433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.62  E-value=0.00028  Score=61.78  Aligned_cols=74  Identities=12%  Similarity=0.092  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC-----------chHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF-----------FGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~-----------lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      ...+...+..|...+.+|+|..|+..|++++...|.+..           .-..+.+.|+.+|...|+.++|+..|++.+
T Consensus       144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  223 (336)
T 1p5q_A          144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL  223 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            445667889999999999999999999999998887641           113689999999999999999999999999


Q ss_pred             HhCCC
Q 023865          234 SNHPS  238 (276)
Q Consensus       234 ~~HPd  238 (276)
                      ..+|+
T Consensus       224 ~~~p~  228 (336)
T 1p5q_A          224 ELDSN  228 (336)
T ss_dssp             HHCTT
T ss_pred             HhCCC
Confidence            78876

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.61  E-value=0.00029  Score=59.17  Aligned_cols=68  Identities=21%  Similarity=0.186  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+..|+|..|+..|++++...|.+    ..+.+.|+.+|...|+.++|+.+|++..+.+|+.
T Consensus        99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  166 (365)
T 4eqf_A           99 AEAWQFLGITQAENENEQAAIVALQRCLELQPNN----LKALMALAVSYTNTSHQQDACEALKNWIKQNPKY  166 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccc
Confidence            5567788888899999999999999999876544    4588899999999999999999999988666553

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=97.60  E-value=0.00069  Score=56.38  Aligned_cols=66  Identities=15%  Similarity=0.045  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      +...+..|...+.+|+|..|+.+|+.++...+.+...-..+.+.|+.+|...|+.++|+.+|++..
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   74 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL   74 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            455677888888888888888888888887665554445778888888888888888888888743

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.59  E-value=0.00032  Score=53.57  Aligned_cols=69  Identities=16%  Similarity=0.154  Sum_probs=59.1

Q ss_pred             HHHHHHHHHH-HHhcCCH--HHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          168 AQLMFELGQK-AYGKGMY--GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       168 ae~~yeaG~a-ALerGdY--~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      ....+..|.. .+..|+|  ..|+..|+.++...|.+    ..+.+.|+.+|...|+.++|+..|+.+...+|+..
T Consensus        78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A           78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE----ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence            4456777888 7799999  99999999999976654    35899999999999999999999999987888753

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.58  E-value=0.0028  Score=45.02  Aligned_cols=67  Identities=13%  Similarity=0.048  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      .+...+..|...+.+|+|..|+.+++.++...+..  ...-..+.+.++.+|...|+.++|+.+|++..
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  116 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  116 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34567778888888888888888888888765532  22225677788888888888888888887765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.58  E-value=0.00026  Score=60.06  Aligned_cols=69  Identities=13%  Similarity=0.019  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      ...+...+..|...+.+|+|..|+.+|+.++...+.+...-..+.+.|+.+|...|+.++|+.+|++..
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL  113 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            345666778888889999999999999998887666555445688888888888999999988888766

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.56  E-value=0.00058  Score=52.03  Aligned_cols=65  Identities=18%  Similarity=0.146  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      ...+..|...+..|+|..|+.+|+.++...|.+    ..+.+.|+.+|...|+.++|+.+|+.....+|
T Consensus       114 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF----PPAFKELARTKMLAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            445666777777888888888888877765543    35777778888888888888888877776666

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.56  E-value=0.00046  Score=50.64  Aligned_cols=68  Identities=18%  Similarity=0.193  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ....+..|...+..|+|..|+++|+.++...+.+    ..+.+.++.+|...|+.++|+.+|++....+|+.
T Consensus        76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  143 (186)
T 3as5_A           76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN----FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE  143 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence            4556677888889999999999999999876543    3588899999999999999999999988677653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.53  E-value=0.00039  Score=53.11  Aligned_cols=68  Identities=18%  Similarity=0.164  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHH-HHHcCCh--HHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMA-YEANNRH--ADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtA-Yqa~Gq~--EkAIALCQ~L~~~HPd~  239 (276)
                      ....+..|...+..|+|..|+.+|+.++...|.+    ..+.+.++.+ |...|+.  ++|+.+|+.....+|+.
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~  114 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN----AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE  114 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc
Confidence            3457788999999999999999999999987765    4589999999 8899998  99999999999788874

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.53  E-value=0.00038  Score=63.85  Aligned_cols=68  Identities=13%  Similarity=0.062  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+..|+|..|+..|++++...|.+    ..+.+.++.||...|+.++|+..|++....+|+.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~  384 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN  384 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            3556677888888899999999999988877665    3588899999999999999999999888666654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.53  E-value=0.00032  Score=58.20  Aligned_cols=68  Identities=15%  Similarity=0.135  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+..|+|..|+..|+.++...|.+    ..+.+.|+.+|...|+.++|+.+|++....+|+.
T Consensus        98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  165 (368)
T 1fch_A           98 MEAWQYLGTTQAENEQELLAISALRRCLELKPDN----QTALMALAVSFTNESLQRQACEILRDWLRYTPAY  165 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence            4456677788888888888888888888765543    3477888888888888888888888877666654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.52  E-value=0.00033  Score=58.96  Aligned_cols=71  Identities=17%  Similarity=0.046  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCC--------CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT--------FFGGEIQIWLAMAYEANNRHADCIALYKQLESN  235 (276)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS--------~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~  235 (276)
                      .+++...+..|...+..|+|..||..+.+++...|.+.        +.-..+...++.||...|+.++||..|...+.-
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l   86 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   86 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            34677889999999999999999999999999888721        112238899999999999999999999999977

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.50  E-value=0.00027  Score=54.92  Aligned_cols=65  Identities=14%  Similarity=0.250  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ..+..|...+..|+|..|+.+|+.++...+.+    ..+.+.++.+|...|+.++|+.+|+.....+|+
T Consensus       127 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  191 (243)
T 2q7f_A          127 LFYMLGTVLVKLEQPKLALPYLQRAVELNEND----TEARFQFGMCLANEGMLDEALSQFAAVTEQDPG  191 (243)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            44555555566666666666666655544332    235555555666666666666666555544443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.49  E-value=0.0005  Score=55.54  Aligned_cols=60  Identities=3%  Similarity=-0.087  Sum_probs=28.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 023865          174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-RHADCIALYKQLESNHP  237 (276)
Q Consensus       174 aG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G-q~EkAIALCQ~L~~~HP  237 (276)
                      .+...+..|+|..|+.+|+.++...|.+.    .+.+.++.+|...| +.++|+.+|++.....|
T Consensus        62 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~  122 (330)
T 3hym_B           62 HIGTLVELNKANELFYLSHKLVDLYPSNP----VSWFAVGCYYLMVGHKNEHARRYLSKATTLEK  122 (330)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTST----HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCcCCH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC
Confidence            34444455555555555555554333222    24555555555555 55555555555543333

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.48  E-value=0.00044  Score=51.76  Aligned_cols=66  Identities=15%  Similarity=0.052  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHhcCC---HHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          169 QLMFELGQKAYGKGM---YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       169 e~~yeaG~aALerGd---Y~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ...+.-|...+-.++   ..+|..+|++++...|.+.+    +.++|+.+|...|+.++||..++.+....|.
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r----A~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA----ALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            445666777765555   89999999999997777766    9999999999999999999999999977776

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.47  E-value=0.00032  Score=55.40  Aligned_cols=63  Identities=13%  Similarity=-0.113  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES  234 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~  234 (276)
                      ....+..|...+..|+|..|+++|+.++...+.+    ..+.+.++.+|...|+.++|+.+|+++..
T Consensus        71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~  133 (252)
T 2ho1_A           71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRN----ARVLNNYGGFLYEQKRYEEAYQRLLEASQ  133 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            3455666777777888888888888877765543    35777778888888888888888888774

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.47  E-value=0.00089  Score=57.32  Aligned_cols=69  Identities=10%  Similarity=0.055  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      +...+..|...+..|+|..|+..|++++...|.+    ..+.+.|+.+|...|+.++|+.+|+......|+..
T Consensus        60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A           60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence            4556777888899999999999999999876554    46888999999999999999999999987777764

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.46  E-value=0.0018  Score=51.11  Aligned_cols=67  Identities=12%  Similarity=0.122  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      +...+..|...+..|+|.+|+.+|++++...+.+    ..+.+.|+.+|...|+.++|+.+|+.....+|+
T Consensus       141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  207 (252)
T 2ho1_A          141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ----PSVALEMADLLYKEREYVPARQYYDLFAQGGGQ  207 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            3445556667777777777777777777655433    356777777777777777777777777655554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.45  E-value=0.00029  Score=63.49  Aligned_cols=75  Identities=8%  Similarity=-0.010  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC------------CCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 023865          164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR------------PTFFGGEIQIWLAMAYEANNRHADCIALYKQ  231 (276)
Q Consensus       164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~------------nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~  231 (276)
                      ....+...+..|...+.+|+|..|+..|++++...+.            ..+.-..+.+.|+.+|...|+.++|+..|++
T Consensus       219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  298 (370)
T 1ihg_A          219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE  298 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            3445666888999999999999999999999985432            2334457899999999999999999999999


Q ss_pred             HHHhCCC
Q 023865          232 LESNHPS  238 (276)
Q Consensus       232 L~~~HPd  238 (276)
                      ....+|+
T Consensus       299 al~~~p~  305 (370)
T 1ihg_A          299 ALEIDPS  305 (370)
T ss_dssp             HHTTCTT
T ss_pred             HHHhCch
Confidence            9977775

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.45  E-value=0.00053  Score=55.32  Aligned_cols=68  Identities=18%  Similarity=0.134  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+..|+|..|+..|+.++...|.+    ..+.+.++.+|...|+.++|+.+|++....+|+.
T Consensus        55 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  122 (327)
T 3cv0_A           55 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNEHNANAALASLRAWLLSQPQY  122 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence            4455666777778888888888888877765443    3577778888888888888888888777555543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.45  E-value=0.00061  Score=58.34  Aligned_cols=64  Identities=14%  Similarity=0.014  Sum_probs=39.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      .+..|...+..|+|..|+.+|+.++...|.+    ..+.+.|+.+|...|+.++|+..|++..+.+|+
T Consensus       298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  361 (450)
T 2y4t_A          298 KERICHCFSKDEKPVEAIRVCSEVLQMEPDN----VNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN  361 (450)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence            3444556666666666666666666654332    246666666666666666666666666655554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.43  E-value=0.0012  Score=47.01  Aligned_cols=67  Identities=22%  Similarity=0.199  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      .+...+..|...+..|+|.+|+++|++++...+..  ...-..+...|+.+|...|+.++|+..|++..
T Consensus        88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A           88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            35667888999999999999999999999765432  33446788999999999999999999998876

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.43  E-value=0.00076  Score=52.37  Aligned_cols=67  Identities=16%  Similarity=0.150  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ....+..|...+..|+|..|+++|++++...+.+    ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  157 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN----GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN  157 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS----HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            3456777888999999999999999999976654    468999999999999999999999998877775

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.40  E-value=0.0006  Score=57.23  Aligned_cols=67  Identities=22%  Similarity=0.307  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      +...+..|...+..|+|..|+..|+.++...|.+    ..+.+.|+.+|...|+.++|+..|++....+|+
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  279 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED----YSLWNRLGATLANGDRSEEAVEAYTRALEIQPG  279 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            3455667777788888888888888888866544    347888888888888888888888887767776

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.40  E-value=0.0018  Score=49.23  Aligned_cols=89  Identities=10%  Similarity=-0.048  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCch--HHHHHHHHHHHHHcCChHHHHHHHHHHH---HhCCCHH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG--GEIQIWLAMAYEANNRHADCIALYKQLE---SNHPSKN  240 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lG--GEAQmwLAtAYqa~Gq~EkAIALCQ~L~---~~HPd~q  240 (276)
                      ..+...+..|...+..|+|.+|+.+|+.++...+......  ..+...|+.+|...|+.++|+..+++..   ..++++.
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  184 (203)
T 3gw4_A          105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSE  184 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence            3456678889999999999999999999997655333332  4556899999999999999999987544   3566776


Q ss_pred             HHHHHHHHHHhhcC
Q 023865          241 IRRQAADLRYILQA  254 (276)
Q Consensus       241 VRqQAKqLLyILEA  254 (276)
                      ....+...+..+..
T Consensus       185 ~~~~~~~~~~~~~~  198 (203)
T 3gw4_A          185 AVNELMTRLNGLEH  198 (203)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             HHHHHHhcccchhh
Confidence            66666666666543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.39  E-value=0.0015  Score=52.70  Aligned_cols=67  Identities=18%  Similarity=0.090  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ....+..|...+..|+|.+|+..|+.++...|.+    ..+.+.|+.+|...|+.++|+.+|++....+|+
T Consensus       206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGY----VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            3456677888888888888888888888866543    347888888888888888888888888777777

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.38  E-value=0.0011  Score=60.69  Aligned_cols=69  Identities=12%  Similarity=0.212  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHH-HHHHHHHHhCCCHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCI-ALYKQLESNHPSKN  240 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAI-ALCQ~L~~~HPd~q  240 (276)
                      ++..|..|...+..|+|..|+..|++++...|.+..    ++..|+.+|...|+.++|. .+|+.+..+.....
T Consensus       351 ~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~----a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~~~~d  420 (457)
T 1kt0_A          351 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA----ARLQISMCQKKAKEHNERDRRIYANMFKKFAEQD  420 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C----HHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            567888999999999999999999999998776665    8999999999999998876 57777664443333

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.36  E-value=0.00032  Score=61.64  Aligned_cols=74  Identities=12%  Similarity=0.108  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCC---CchH----------HHHHHHHHHHHHcCChHHHHHHHHH
Q 023865          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT---FFGG----------EIQIWLAMAYEANNRHADCIALYKQ  231 (276)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS---~lGG----------EAQmwLAtAYqa~Gq~EkAIALCQ~  231 (276)
                      ...+...+..|...+.+|+|..|+..|+.++...+.+.   ..|-          .+.+.|+.+|...|+.++|+..|++
T Consensus       176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            33455577778888888888888888888887665432   1111          3677788888888888888888887


Q ss_pred             HHHhCCC
Q 023865          232 LESNHPS  238 (276)
Q Consensus       232 L~~~HPd  238 (276)
                      ....+|+
T Consensus       256 al~~~p~  262 (338)
T 2if4_A          256 VLTEEEK  262 (338)
T ss_dssp             HHHHCTT
T ss_pred             HHHhCCC
Confidence            7766664

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.35  E-value=0.00088  Score=55.54  Aligned_cols=68  Identities=19%  Similarity=0.222  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+..|+|.+|+.+|++++...|.+    ..+.+.|+.+|...|+.++|+.+|++....+|+.
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  131 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH----MEAWQYLGTTQAENEQELLAISALRRCLELKPDN  131 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC
Confidence            3446788999999999999999999999866544    4699999999999999999999999998788753

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.34  E-value=0.0012  Score=53.35  Aligned_cols=75  Identities=12%  Similarity=0.158  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQAAD  247 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQAKq  247 (276)
                      ...+..|...+..|+|..|+.+|+.++...|.+.    .+.+.|+.+|...|+.++|+.+|++.....|+ +.+..+-..
T Consensus       237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  312 (330)
T 3hym_B          237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA----STYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH  312 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS----HHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch----HHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHH
Confidence            3567788999999999999999999999776543    59999999999999999999999999877774 444444333

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.32  E-value=0.00019  Score=52.32  Aligned_cols=59  Identities=14%  Similarity=0.064  Sum_probs=46.5

Q ss_pred             hcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       180 erGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ..|+|.+||.+|++++... ...+.-..+.+.|+.+|...|+.++|+..|++.+..+|+.
T Consensus         2 ~~g~~~~A~~~~~~al~~~-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   60 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASG-LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH   60 (117)
T ss_dssp             -----CCCHHHHHHHHSSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCCcHHHHHHHHHHHHHcC-CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            4699999999999999853 2234456799999999999999999999999999888874

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.30  E-value=0.0013  Score=50.66  Aligned_cols=72  Identities=11%  Similarity=0.085  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHH-HHHHHHhCCCH-HHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIAL-YKQLESNHPSK-NIRR  243 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIAL-CQ~L~~~HPd~-qVRq  243 (276)
                      +...+..|...+..|+|..|+..|++++...|.+.    .+.+.|+.+|...|+.++|+.. +++.++-+|+. .+..
T Consensus        65 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~  138 (150)
T 4ga2_A           65 PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK----DLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYK  138 (150)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHH
Confidence            56788899999999999999999999999777654    4999999999999999877764 57666578864 4433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.30  E-value=0.00067  Score=67.57  Aligned_cols=68  Identities=13%  Similarity=0.113  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+.+|+|.+|++.|++|++..|.+    .++.+.|+.+|...|+.++|+..|++.++-+|+.
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~----~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~  110 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF----ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF  110 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            4556667777777888888888888877765544    3477778888888888888888887777666653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.28  E-value=0.0012  Score=51.15  Aligned_cols=64  Identities=19%  Similarity=0.124  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      ....+..|...+..|+|.+|+..|+.++...|....  ..++..|+.+|...|+.++|+..|+...
T Consensus       108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~a~~~l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A          108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQD--GEVKKTFMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT--THHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh--HHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            456788888889999999999999998887665433  2588888899999999999999998765

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.26  E-value=0.00069  Score=57.57  Aligned_cols=67  Identities=25%  Similarity=0.242  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      +...+..|...+.+|+|.+|++.|++++...|.+.    .+.+.|+.+|...|+.++|+..|++....+|+
T Consensus        67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  133 (388)
T 1w3b_A           67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI----DGYINLAAALVAAGDMEGAVQAYVSALQYNPD  133 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            34556667777777777777777777776554432    35666666666666666666666666555554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.25  E-value=0.00049  Score=60.47  Aligned_cols=66  Identities=11%  Similarity=0.026  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ...+..|...+..|+|..|+.+|++++...|.+    ..+.+.++.||...|+.++|+..|++.....|+
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~  296 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN----PKALFRRGKAKAELGQMDSARDDFRKAQKYAPD  296 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            357889999999999999999999999987654    369999999999999999999999998755665

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.25  E-value=0.0005  Score=58.42  Aligned_cols=68  Identities=18%  Similarity=0.101  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+.+|+|..|+..|+.++...|.+    ..+.+.++.+|...|+.++|+..|++....+|+.
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~   71 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQS   71 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            4567889999999999999999999999977654    3589999999999999999999999998777764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.23  E-value=0.0049  Score=48.18  Aligned_cols=70  Identities=19%  Similarity=0.168  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN  235 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~----~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~  235 (276)
                      ..+...+..|...+..|+|.+|+.+|++++..    ...+.+.-..+.+.|+.+|...|+.++|+.++++....
T Consensus       125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34667788899999999999999999999986    23445666789999999999999999999999998844

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.22  E-value=0.001  Score=56.55  Aligned_cols=72  Identities=13%  Similarity=0.125  Sum_probs=49.1

Q ss_pred             HHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH---HHHHHHHHHHHhh
Q 023865          177 KAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK---NIRRQAADLRYIL  252 (276)
Q Consensus       177 aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~---qVRqQAKqLLyIL  252 (276)
                      ..+.+|++..|++.|++++...|.+    ..+++.|+.+|...|+.++|+..|+.+...+|+.   .++..--.++..+
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~----~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~  268 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPED----AALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL  268 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred             HHHhhcccCccHHHHHHHHhcCCcc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence            3444444444555555555544433    3599999999999999999999999999888874   4555444444433

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.0011  Score=56.96  Aligned_cols=67  Identities=9%  Similarity=-0.012  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCch-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG-------------GEIQIWLAMAYEANNRHADCIALYKQLESNH  236 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lG-------------GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H  236 (276)
                      ..++.|..++.+|+|.+|++.|..++...+..+...             .++...|+.+|...|+.++|+.+++.+...+
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            467889999999999999999999998877665432             2567889999999999999999999887433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.21  E-value=0.0092  Score=45.25  Aligned_cols=68  Identities=10%  Similarity=0.013  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC---CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP---TFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n---S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      ..+...+..|...+..|+|..|+.+|++++......   ...-+.+.+.|+.+|...|+.++|+.+|++..
T Consensus        64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A           64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            446678889999999999999999999999874422   22456788999999999999999999998865

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.19  E-value=0.0032  Score=56.99  Aligned_cols=69  Identities=22%  Similarity=0.213  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF-GGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~l-GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ....|..|.++-..|++..|+.+|++++...  ..+. ...+++++++++...|+.++|+++++++...+|+
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~--~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEANDSP--AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTST--TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC--CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            3467888999999999999999999988421  1022 5679999999999999999999999999999998

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.19  E-value=0.0015  Score=55.11  Aligned_cols=73  Identities=8%  Similarity=0.018  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCc--h-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF--G-GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~l--G-GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      +...+..|...+..|+|.+||.+|++++...+.+...  + ..+.+.++.+|...|+.++|+..|++...-+|+..
T Consensus       158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  233 (292)
T 1qqe_A          158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA  233 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence            4456778999999999999999999999977765442  1 23667889999999999999999999875566543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.17  E-value=0.0012  Score=60.69  Aligned_cols=68  Identities=21%  Similarity=0.317  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+..|+|.+|+++|+++++..|.+    ..+.+.|+.+|...|+.++|+..|++..+.+|+.
T Consensus        57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  124 (568)
T 2vsy_A           57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH----PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE  124 (568)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            5567788999999999999999999999976654    4689999999999999999999999988788864

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.17  E-value=0.0011  Score=61.41  Aligned_cols=68  Identities=13%  Similarity=0.010  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+.+|+|.+|++.++++++..|.+    ..+.+.|+.+|...|+.++|+..|++..+.+|+.
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~  107 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD  107 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            5667889999999999999999999999976543    4699999999999999999999999988788864

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.14  E-value=0.0083  Score=46.89  Aligned_cols=70  Identities=17%  Similarity=0.062  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC----CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTII----PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN  235 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~----~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~  235 (276)
                      ..+...+..|...+.+|+|..|+++|++++...    ...++.-..+.+.|+.+|...|+.++|+.+|++....
T Consensus        83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B           83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            456678889999999999999999999999864    2345666789999999999999999999999998844

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.10  E-value=0.0026  Score=54.11  Aligned_cols=71  Identities=8%  Similarity=-0.026  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCch--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG--GEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lG--GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+..|+|.+||++|++++...+.+....  ..+.+.++.+|...|+.++|+..|++.. .+|+.
T Consensus       155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence            55677889999999999999999999998776544332  3466777888999999999999999988 77753

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.09  E-value=0.0025  Score=54.98  Aligned_cols=75  Identities=17%  Similarity=0.136  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHh---cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023865          170 LMFELGQKAYG---KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA  246 (276)
Q Consensus       170 ~~yeaG~aALe---rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAK  246 (276)
                      ..+..|...+.   .|+|..|+.+|+.++...|.+    ..+.+.|+.+|...|+.++|+.+|++....+|+..-...+.
T Consensus       414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  489 (514)
T 2gw1_A          414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS----EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI  489 (514)
T ss_dssp             HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence            56778888899   999999999999999976544    46899999999999999999999999998999876555544


Q ss_pred             HH
Q 023865          247 DL  248 (276)
Q Consensus       247 qL  248 (276)
                      .+
T Consensus       490 ~~  491 (514)
T 2gw1_A          490 TF  491 (514)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.09  E-value=0.0018  Score=59.41  Aligned_cols=68  Identities=13%  Similarity=-0.011  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN---NRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~---Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+..|+|.+|++.|+++++..|.+    ..+...|+.+|...   |+.++|+..|++....+|+.
T Consensus        91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A           91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE----PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            5677888999999999999999999999977654    36899999999999   99999999999999888876

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.07  E-value=0.003  Score=55.23  Aligned_cols=67  Identities=18%  Similarity=0.201  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ....+..|...+..|+|..|+..|++++...|.+.    .+.+.|+.+|...|+.++|+.+|+.....+|+
T Consensus       310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  376 (537)
T 3fp2_A          310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV----YPYIQLACLLYKQGKFTESEAFFNETKLKFPT  376 (537)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            34566677778888888888888888887665543    47788888888888888888888887767665

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.06  E-value=0.0024  Score=53.90  Aligned_cols=72  Identities=19%  Similarity=0.173  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHhc-CCHHHHHHHHHHHhhhCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGK-GMYGRAIEFLEGALTIIPRPTFF--GGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALer-GdY~qAIelLE~Al~~~~~nS~l--GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +......|..-..+ |+|.+||.+|++++...+.....  -..+...|+.+|...|+.++|+.+|++....+|+.
T Consensus       117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  191 (292)
T 1qqe_A          117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence            45566778877786 99999999999999987744322  24678899999999999999999999999767654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.05  E-value=0.0015  Score=55.03  Aligned_cols=61  Identities=18%  Similarity=0.209  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023865          184 YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-----------RHADCIALYKQLESNHPSKNIRRQAADL  248 (276)
Q Consensus       184 Y~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G-----------q~EkAIALCQ~L~~~HPd~qVRqQAKqL  248 (276)
                      |.+||..|++|+.+.|.+..    +.+.|..||...|           +.++|+..|++-++-.|+...-..|..+
T Consensus        62 ~~eAi~~le~AL~ldP~~~~----A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~  133 (158)
T 1zu2_A           62 IQEAITKFEEALLIDPKKDE----AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcHH----HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            67999999999998777655    9999999999775           8999999999998899998777766554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.05  E-value=0.0023  Score=54.34  Aligned_cols=65  Identities=20%  Similarity=0.193  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ..+..|...+.+|+|..|++.|+.++...|.+    ..+...|+.+|...|+.++|+.+|++....+|+
T Consensus       239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  303 (388)
T 1w3b_A          239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHF----PDAYCNLANALKEKGSVAEAEDCYNTALRLCPT  303 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC----HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence            34555666677777777777777777644433    236666777777777777777777766655554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.04  E-value=0.0034  Score=50.20  Aligned_cols=69  Identities=17%  Similarity=0.163  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC----CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR----PTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN  235 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~----nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~  235 (276)
                      .+...+..|...+.+|+|..|+.+|+.++.....    +.+.-..+...|+.+|...|+.++|+.+|++....
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   98 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI   98 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3556788899999999999999999999986432    45556789999999999999999999999998843

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.04  E-value=0.0018  Score=64.57  Aligned_cols=68  Identities=18%  Similarity=0.147  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+..|+|.+|++.|+++++..|.+    ..+.+.|+.+|...|+.++|++.|++..+..|+.
T Consensus        77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~----~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~  144 (723)
T 4gyw_A           77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF----ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF  144 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            5677888999999999999999999999876654    3589999999999999999999999988778863

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=97.00  E-value=0.0044  Score=49.24  Aligned_cols=68  Identities=13%  Similarity=0.069  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLES  234 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~  234 (276)
                      .+...+..|...+..|+|.+|+.+|+.++...+..  ...-..+.+.++.+|...|+.++|+.++++...
T Consensus       222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  291 (338)
T 3ro2_A          222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  291 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            34567888899999999999999999998766533  233356788899999999999999999988763

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=96.99  E-value=0.0045  Score=53.08  Aligned_cols=61  Identities=8%  Similarity=-0.060  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ..+..|...+..|+|..|++.|++      +   ...++.+.++.+|...|+.++|+..++.+...+|+.
T Consensus       103 ~~~~la~~~~~~g~~~~Al~~l~~------~---~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~  163 (291)
T 3mkr_A          103 FLLMAASIYFYDQNPDAALRTLHQ------G---DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA  163 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTT------C---CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHhC------C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc
Confidence            345556666666666666666655      1   122466666666666666666666666665555554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.99  E-value=0.00038  Score=64.64  Aligned_cols=69  Identities=13%  Similarity=0.057  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      .+...+..|...+.+|+|.+|+++|+++++..|.+    ..+...|+.+|...|+.++|+..|++....+|+.
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   73 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY   73 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            34556677888899999999999999999986655    4699999999999999999999999999777763

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.99  E-value=0.0047  Score=52.34  Aligned_cols=64  Identities=14%  Similarity=0.062  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~--lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      ..+..|...+.+|+|..|+.+|+.++...+....  .-..+...|+.+|...|+.++|+.+|++..
T Consensus       265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  330 (411)
T 4a1s_A          265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL  330 (411)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4556666677777777777777777665543222  224556666677777777777777666654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.98  E-value=0.0079  Score=50.27  Aligned_cols=85  Identities=11%  Similarity=0.069  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC--CCCchHHHHHHHHHHHHHcCChHHH-HHHHHH---HHHhCCCHHHH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPR--PTFFGGEIQIWLAMAYEANNRHADC-IALYKQ---LESNHPSKNIR  242 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~--nS~lGGEAQmwLAtAYqa~Gq~EkA-IALCQ~---L~~~HPd~qVR  242 (276)
                      ...+..|...+.+|+|.+|+.++++++...+.  ....-+.+.+.++.+|...|+.++| +..|++   +.+...++...
T Consensus       197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~~  276 (293)
T 2qfc_A          197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYK  276 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhhH
Confidence            57788999999999999999999999976542  2233378889999999999999999 555554   44567777776


Q ss_pred             HHHHHHHHhhc
Q 023865          243 RQAADLRYILQ  253 (276)
Q Consensus       243 qQAKqLLyILE  253 (276)
                      +.-..++.-||
T Consensus       277 ~~~~~~~~~~~  287 (293)
T 2qfc_A          277 EALVNKISRLE  287 (293)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHh
Confidence            66666666554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.95  E-value=0.0048  Score=51.87  Aligned_cols=80  Identities=15%  Similarity=0.132  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH
Q 023865          167 TAQLMFELGQKAYGKG---MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR  243 (276)
Q Consensus       167 ~ae~~yeaG~aALerG---dY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRq  243 (276)
                      ..+..|+-|..-....   ++.++|.+|+.++....+.  .--...++|+.+|...|+.++|+..|..+....|+-...+
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~--~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~  108 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK  108 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            3567888888888877   8889999999999866221  1236999999999999999999999999998999765544


Q ss_pred             HHHHH
Q 023865          244 QAADL  248 (276)
Q Consensus       244 QAKqL  248 (276)
                      ..+++
T Consensus       109 ~Lk~~  113 (152)
T 1pc2_A          109 ELERL  113 (152)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.93  E-value=0.0086  Score=47.85  Aligned_cols=69  Identities=19%  Similarity=0.122  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC----CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP----RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN  235 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~----~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~  235 (276)
                      .+...+..|...+..|+|..|+.+|+.++....    .+.+.-..+.+.|+.+|...|+.++|+.+|++..+.
T Consensus        68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  140 (311)
T 3nf1_A           68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI  140 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            455678889999999999999999999998642    334556789999999999999999999999998844

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.90  E-value=0.013  Score=47.45  Aligned_cols=70  Identities=14%  Similarity=0.089  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALe----rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ....+..|...+.    .|+|.+|+.+|++++...      -..+.+.|+.+|..    .|+.++|+.+|++.. ...++
T Consensus        38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~~~  110 (273)
T 1ouv_A           38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC-DLKYA  110 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCH
T ss_pred             HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH-HcCCc
Confidence            4566677777777    788888888888877642      24677778888887    888888888888777 44455


Q ss_pred             HHHHH
Q 023865          240 NIRRQ  244 (276)
Q Consensus       240 qVRqQ  244 (276)
                      ...-.
T Consensus       111 ~a~~~  115 (273)
T 1ouv_A          111 EGCAS  115 (273)
T ss_dssp             HHHHH
T ss_pred             cHHHH
Confidence            44333

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=96.90  E-value=0.0016  Score=62.79  Aligned_cols=64  Identities=17%  Similarity=0.211  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ..+..|...+..|+|.+|++.|+++++..|.+.    .+.+.|+.+|...|+.++ +..|++..+.+|+
T Consensus       469 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~  532 (681)
T 2pzi_A          469 LVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL----APKLALAATAELAGNTDE-HKFYQTVWSTNDG  532 (681)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS----HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence            444455555555555555555555555444332    245555555555555555 5555555444443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.89  E-value=0.012  Score=48.95  Aligned_cols=66  Identities=23%  Similarity=0.203  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      +...+..|...+..|+|..|+.+|+.++...+..  ...-..+...|+.+|...|+.++|+.+|++..
T Consensus       267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  334 (406)
T 3sf4_A          267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  334 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5567788999999999999999999999876533  33335688899999999999999999999855

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=96.88  E-value=0.0045  Score=51.77  Aligned_cols=66  Identities=12%  Similarity=0.101  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhh---CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTI---IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~---~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      +...+..|...+.+|+|..|+.+|++++..   .+........+.+.++.+|...|+.++|+.+|++..
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal  223 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            556778899999999999999999999944   333333334799999999999999999999999876

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=96.88  E-value=0.0041  Score=55.51  Aligned_cols=68  Identities=19%  Similarity=0.220  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+..|+|..|++.|++++...|.+    ..+...|+.+|...|+.++|+.+|+++.+.+|+.
T Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~  583 (597)
T 2xpi_A          516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTND----ANVHTAIALVYLHKKIPGLAITHLHESLAISPNE  583 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence            4456777888899999999999999999976544    3699999999999999999999999999888875

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.86  E-value=0.007  Score=52.14  Aligned_cols=70  Identities=9%  Similarity=0.020  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCC-CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR-PTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN  235 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~-nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~  235 (276)
                      ..+...+..|...+.+|+|..|+++|++++..... ..+....+.+.|+.+|...|+.++|+.+|++...-
T Consensus       220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  290 (378)
T 3q15_A          220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH  290 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            34667888999999999999999999999985542 34455889999999999999999999999987744

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.85  E-value=0.0057  Score=51.14  Aligned_cols=68  Identities=13%  Similarity=0.128  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC--CCchHHHHHHHHHHHHHcCC-hHHHHHHHHHHH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNR-HADCIALYKQLE  233 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n--S~lGGEAQmwLAtAYqa~Gq-~EkAIALCQ~L~  233 (276)
                      ..+...+..|...+.+|+|.+|+.++++++...+..  ...-+.+.+.++.+|...|+ .++|+..|++-.
T Consensus       194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            446678999999999999999999999999876533  33347899999999999996 499999988765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.83  E-value=0.00023  Score=49.40  Aligned_cols=66  Identities=15%  Similarity=0.084  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF--GGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~l--GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      ....+..|...+..|+|..|++.|+.++...|.+...  ...+.+.++.+|...|+.+.|+..++.+.
T Consensus        38 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  105 (111)
T 2l6j_A           38 PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP  105 (111)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence            4567889999999999999999999999977765221  26788999999999999988887766554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=96.76  E-value=0.004  Score=56.80  Aligned_cols=68  Identities=3%  Similarity=-0.026  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGM-YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGd-Y~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+..|+ |..||..|++++...|.+.    ++...++.+|...|+.++|+..|++.+...|+.
T Consensus       131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~----~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~  199 (382)
T 2h6f_A          131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY----QVWHHRRVLVEWLRDPSQELEFIADILNQDAKN  199 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence            5566777888888896 9999999999998766654    488889999999999999999999888777754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.73  E-value=0.014  Score=50.10  Aligned_cols=68  Identities=7%  Similarity=0.072  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC-C-CchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP-T-FFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n-S-~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      ..+...+..|...+.+|+|..|+.+|++++...... . +.-..+.+.|+.+|...|+.++|+.+|++..
T Consensus       222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  291 (383)
T 3ulq_A          222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM  291 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            345678889999999999999999999999865422 2 5557899999999999999999999998866

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.73  E-value=0.0027  Score=53.40  Aligned_cols=66  Identities=18%  Similarity=0.167  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-------CCCCCCchHHHH----HHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTI-------IPRPTFFGGEIQ----IWLAMAYEANNRHADCIALYKQLESNH  236 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~-------~~~nS~lGGEAQ----mwLAtAYqa~Gq~EkAIALCQ~L~~~H  236 (276)
                      +...++.|......|+|..||..++.++.+       .|.+    ..+.    +-++.||.+.|+.++|+..|++.+.-.
T Consensus        57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~----~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~  132 (159)
T 2hr2_A           57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE----GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI  132 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch----HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            336889999999999999999999999997       6543    4566    999999999999999999999987443


Q ss_pred             C
Q 023865          237 P  237 (276)
Q Consensus       237 P  237 (276)
                      |
T Consensus       133 p  133 (159)
T 2hr2_A          133 E  133 (159)
T ss_dssp             H
T ss_pred             C
Confidence            3

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.64  E-value=0.019  Score=54.92  Aligned_cols=68  Identities=6%  Similarity=-0.128  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~----~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      .++......|.....+|+|.+|+.+++++++.    .+++.+.-+....-|+.+|..+|+.++|+.+|++-.
T Consensus       349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            46778888899999999999999999999854    568888888999999999999999999999998754

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.61  E-value=0.023  Score=52.10  Aligned_cols=75  Identities=17%  Similarity=0.219  Sum_probs=63.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-------CCCHHHHHHH
Q 023865          173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN-------HPSKNIRRQA  245 (276)
Q Consensus       173 eaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~-------HPd~qVRqQA  245 (276)
                      ..+...+..|+|..||..|..++...|.+-.    +...|..||...|+..+|+..|+.+...       -|.++++..-
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~----~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~  251 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFEHPYREP----LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  251 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            3456678999999999999999998877655    8899999999999999999999998732       5889998888


Q ss_pred             HHHHHh
Q 023865          246 ADLRYI  251 (276)
Q Consensus       246 KqLLyI  251 (276)
                      +++|.-
T Consensus       252 ~~il~~  257 (388)
T 2ff4_A          252 ERILRQ  257 (388)
T ss_dssp             HHHHTT
T ss_pred             HHHHcC
Confidence            877653

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=96.60  E-value=0.0088  Score=51.25  Aligned_cols=67  Identities=19%  Similarity=0.142  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHH-HHHHHHHHHHhCCCH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHAD-CIALYKQLESNHPSK  239 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~Ek-AIALCQ~L~~~HPd~  239 (276)
                      ...+..|...+..|+|..|++.|+.++...|.+.    .+...|+.+|...|+..+ |..+++++...+|+.
T Consensus       201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~----~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~  268 (291)
T 3mkr_A          201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP----ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH  268 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence            3455566677777777777777777777554433    366777777777777765 456666666666653

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.53  E-value=0.013  Score=56.03  Aligned_cols=69  Identities=9%  Similarity=0.056  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC----CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP----RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~----~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      +..++..++.+..+..+|+|.+|+.+++.+++...    .+.+.-..+...|+.+|..+|+.++|+.+|++..
T Consensus       306 l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL  378 (490)
T 3n71_A          306 IQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV  378 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            44455677777788899999999999999996543    5666677899999999999999999999998865

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=96.52  E-value=0.0092  Score=53.21  Aligned_cols=64  Identities=16%  Similarity=0.191  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      ..+..|...+..|+|..|+++|+.++...+.+    ..+...|+.+|...|+.++|+.+|++....+|
T Consensus       375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  438 (597)
T 2xpi_A          375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQF----GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ  438 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            34445666667777777777777776654432    23666677777777777777777766654555

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=96.50  E-value=0.023  Score=48.12  Aligned_cols=70  Identities=14%  Similarity=-0.010  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC----CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP----TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n----S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      +...+..|...+.+|+|.+|+++++.++...+..    ++....+.+.|+.+|...|+.++|+.+|++.....|
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS  166 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            3345667788888888888888888888765421    234456677788888888888888888887664444

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=96.50  E-value=0.006  Score=55.63  Aligned_cols=69  Identities=10%  Similarity=-0.044  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      +...+..|...+..|+|..||..|++++...|.+..    +.+.++.+|...|+.++|+..|++.+..+|+..
T Consensus       166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~----a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~  234 (382)
T 2h6f_A          166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYH----AWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN  234 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Confidence            556788899999999999999999999998777654    999999999999999999999999998888643

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=96.50  E-value=0.013  Score=53.74  Aligned_cols=72  Identities=10%  Similarity=0.081  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHhc--------CCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGK--------GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALer--------GdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+..        |+|.+|+..|++++...|. .+.-..+.+.|+.+|...|+.++|+..|++.....|+.
T Consensus       213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  291 (474)
T 4abn_A          213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW  291 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            44556677777777        9999999999999997552 11334699999999999999999999999988778874


Q ss_pred             H
Q 023865          240 N  240 (276)
Q Consensus       240 q  240 (276)
                      .
T Consensus       292 ~  292 (474)
T 4abn_A          292 P  292 (474)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.50  E-value=0.033  Score=45.11  Aligned_cols=71  Identities=11%  Similarity=0.074  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCC
Q 023865          166 ATAQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHP  237 (276)
Q Consensus       166 e~ae~~yeaG~aALe----rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HP  237 (276)
                      ......+..|...+.    .|+|..|+.+|++++...      ...+.+.|+.+|..    .|+.++|+.+|++.. ...
T Consensus        72 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~-~~~  144 (273)
T 1ouv_A           72 NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC-DLN  144 (273)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTT
T ss_pred             CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH-hcC
Confidence            346678888999999    999999999999999852      35799999999999    999999999999999 454


Q ss_pred             CHHHHH
Q 023865          238 SKNIRR  243 (276)
Q Consensus       238 d~qVRq  243 (276)
                      ++...-
T Consensus       145 ~~~a~~  150 (273)
T 1ouv_A          145 DGDGCT  150 (273)
T ss_dssp             CHHHHH
T ss_pred             cHHHHH
Confidence            554433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=96.43  E-value=0.0078  Score=51.10  Aligned_cols=52  Identities=8%  Similarity=0.024  Sum_probs=25.8

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          182 GMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       182 GdY~qAIelLE~Al~~~~~nS~--lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      |+|.+|+++|++++...+....  .-..+...|+.+|...|+.++||..|++..
T Consensus       129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  182 (307)
T 2ifu_A          129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK  182 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5555555555555554443211  123444445555555555555555555555

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.43  E-value=0.009  Score=49.93  Aligned_cols=66  Identities=12%  Similarity=0.104  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC---CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP---RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~---~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      +......|...+..|+|.+|+.+|++++....   .+.+.-..+.+.|+.+|...|+.++|+..|++..
T Consensus       155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al  223 (293)
T 3u3w_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            33567789999999999999999999996433   3445556788999999999999999999998766

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.38  E-value=0.0069  Score=52.21  Aligned_cols=69  Identities=17%  Similarity=0.223  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES  234 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~--~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~  234 (276)
                      ..+...+..|...+..|+|..|+++|++++...+  .+...-+.+...|+.+|...|+.++|+..|++...
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3466778899999999999999999999998765  23334567888999999999999999999999885

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=96.34  E-value=0.0047  Score=59.63  Aligned_cols=62  Identities=13%  Similarity=0.083  Sum_probs=32.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       172 yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      +..|...+..|+|.+ ++.|+++++..|.+.    .+.+.|+.+|...|+.++|++.|++.....|+
T Consensus       505 ~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~  566 (681)
T 2pzi_A          505 LALAATAELAGNTDE-HKFYQTVWSTNDGVI----SAAFGLARARSAEGDRVGAVRTLDEVPPTSRH  566 (681)
T ss_dssp             HHHHHHHHHHTCCCT-TCHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred             HHHHHHHHHcCChHH-HHHHHHHHHhCCchH----HHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence            444555555555555 555555555444332    25555555555555555555555555544444

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.33  E-value=0.02  Score=46.29  Aligned_cols=68  Identities=18%  Similarity=0.104  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHhCCCHHH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN----RHADCIALYKQLESNHPSKNI  241 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G----q~EkAIALCQ~L~~~HPd~qV  241 (276)
                      .-+...+..|...+..|+|.+|+.+|++++..   .   -..+++.|+..|.. |    +.++|+.+|++.. ...++..
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~-~~g~~~a   87 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ---G---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV-EAGSKSG   87 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---T---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH-HTTCHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---C---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH-HCCCHHH
Confidence            34666777888888888888888888888763   1   13678888888887 6    7888888888877 4555543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.28  E-value=0.01  Score=50.84  Aligned_cols=67  Identities=12%  Similarity=0.138  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCC---CchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT---FFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS---~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      .+...+..|...+..|+|..|+.++++++...+...   +.-+.+...|+.+|...|+.++|+..|++..
T Consensus       142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  211 (383)
T 3ulq_A          142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAY  211 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            456667777788888888888888888887655442   2234677778888888888888888877665

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=96.26  E-value=0.063  Score=45.38  Aligned_cols=64  Identities=20%  Similarity=0.120  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCc-hHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF-GGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~l-GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      ..+-.|..++.+|+|.+|+.+++.++...+...+. -..+...++.+|...|+.++|+.++++..
T Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   80 (373)
T 1hz4_A           16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE   80 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            34556667777777777777777777665533321 23455666777777777777777776654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.25  E-value=0.0094  Score=42.61  Aligned_cols=50  Identities=14%  Similarity=0.121  Sum_probs=43.3

Q ss_pred             HHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          186 RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       186 qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      .|++.|+.++...|.+    ..+.+.|+.+|...|+.++|+..|+.....+|+.
T Consensus         3 ~a~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   52 (115)
T 2kat_A            3 AITERLEAMLAQGTDN----MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY   52 (115)
T ss_dssp             CHHHHHHHHHTTTCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence            5789999999866644    3599999999999999999999999999788864

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.25  E-value=0.016  Score=54.47  Aligned_cols=68  Identities=10%  Similarity=0.033  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~----~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      .++......|.....+|+|.+|+.+++++++.    .+++.+.-+...+-|+.+|..+|+.++|+.+|++-.
T Consensus       338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            45677888899999999999999999999854    568888888999999999999999999999998754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.21  E-value=0.016  Score=54.06  Aligned_cols=65  Identities=5%  Similarity=-0.028  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~----~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      +..+.....+..+|+|.+|+++++.+++.    ...+.+.-..+...|+.+|..+|+.++|+.+|++..
T Consensus       288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L  356 (429)
T 3qwp_A          288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM  356 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            34556666788999999999999999865    345666678899999999999999999999999876

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.16  E-value=0.042  Score=42.14  Aligned_cols=69  Identities=12%  Similarity=0.042  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCC
Q 023865          166 ATAQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHP  237 (276)
Q Consensus       166 e~ae~~yeaG~aALe----rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HP  237 (276)
                      .-+...+..|..-+.    .++|.+|+.+|++++..   ..   ..+++.|+..|..    .++.++|+.+|++-. ...
T Consensus        55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~---g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~g  127 (138)
T 1klx_A           55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL---ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC-RLG  127 (138)
T ss_dssp             TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT
T ss_pred             CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC---CC---HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH-HCC
Confidence            456778889988888    89999999999999984   22   4799999999999    999999999999998 566


Q ss_pred             CHHH
Q 023865          238 SKNI  241 (276)
Q Consensus       238 d~qV  241 (276)
                      ++.-
T Consensus       128 ~~~A  131 (138)
T 1klx_A          128 SEDA  131 (138)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            6643

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.14  E-value=0.029  Score=52.74  Aligned_cols=66  Identities=8%  Similarity=-0.080  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC----CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTII----PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~----~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      +...++.+..+-..|+|.+|+.+++++++..    .++.+.-..+...|+.+|..+|+.++|+.+|++..
T Consensus       298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL  367 (433)
T 3qww_A          298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII  367 (433)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            4455666777778899999999999999753    45666667889999999999999999999999876

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.09  E-value=0.02  Score=53.44  Aligned_cols=68  Identities=6%  Similarity=-0.029  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~----~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      .++......|.....+|+|.+|+.++++++..    .+++.+.-+...+-|+.+|..+|+.++|+.+|++-.
T Consensus       327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            35677788889999999999999999998854    678899889999999999999999999999988654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.87  E-value=0.022  Score=49.04  Aligned_cols=75  Identities=20%  Similarity=0.205  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC---CCCC------------------chHHHHHHHHHHHHHcCChHHH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP---RPTF------------------FGGEIQIWLAMAYEANNRHADC  225 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~---~nS~------------------lGGEAQmwLAtAYqa~Gq~EkA  225 (276)
                      .++..+--|..-|.+|+|++|..+|..|++...   .+..                  .-.++++.++.+|...|+.++|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            356678889999999999999999999865433   1110                  1127999999999999999999


Q ss_pred             HHHHHHHHHhCCCHHH
Q 023865          226 IALYKQLESNHPSKNI  241 (276)
Q Consensus       226 IALCQ~L~~~HPd~qV  241 (276)
                      |++-+.|-.+...|.|
T Consensus       142 i~~Le~Ip~k~Rt~kv  157 (167)
T 3ffl_A          142 IAILDGIPSRQRTPKI  157 (167)
T ss_dssp             HHHHHTSCGGGCCHHH
T ss_pred             HHHHhcCCchhcCHHH
Confidence            9998877545555544

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=95.84  E-value=0.062  Score=49.31  Aligned_cols=65  Identities=9%  Similarity=0.019  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      .+-.|...+..|+|.+|+++|.+.+...+  +....+++..+|..|...|+.+.|.++++.+.+.+|
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~--~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~  167 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDNDE--AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE  167 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSSC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCC--CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence            46678888889999999999999877444  345679999999999999999999999999998888

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=95.83  E-value=0.015  Score=52.63  Aligned_cols=66  Identities=9%  Similarity=0.060  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ..|..|..+++.|+|..|+.+|+++.....  ......+.++|.+||...|+.++|+..|++.. .-|.
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d--~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~-~g~~  202 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPD--KFLAGAAGVAHGVAAANLALFTEAERRLTEAN-DSPA  202 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCC--cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh-cCCC
Confidence            458888999999999999999998766331  11345799999999999999999999999998 5554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=95.83  E-value=0.024  Score=37.73  Aligned_cols=49  Identities=31%  Similarity=0.470  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN  220 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G  220 (276)
                      ....+..|...+..|+|..|+.+|+.++...|.+    ..+...|+.+|...|
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcC
Confidence            3456788999999999999999999999976654    358889999988765

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=95.75  E-value=0.088  Score=45.55  Aligned_cols=77  Identities=16%  Similarity=0.135  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCch------------------------------------------
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG------------------------------------------  205 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lG------------------------------------------  205 (276)
                      ....+..|...+..|+|..|+..|++++...|.+....                                          
T Consensus       247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  326 (472)
T 4g1t_A          247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA  326 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34456678888899999999999999888776553221                                          


Q ss_pred             -------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023865          206 -------GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (276)
Q Consensus       206 -------GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ  244 (276)
                             ..+.+.|+.+|...|+.++|+..|++..+..|++.....
T Consensus       327 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~  372 (472)
T 4g1t_A          327 DEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL  372 (472)
T ss_dssp             HHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             hhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHH
Confidence                   112356788999999999999999998867888765543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=95.73  E-value=0.1  Score=42.09  Aligned_cols=71  Identities=11%  Similarity=0.135  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHHhCC
Q 023865          168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-N-----RHADCIALYKQLESNHP  237 (276)
Q Consensus       168 ae~~yeaG~aALe----rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~-G-----q~EkAIALCQ~L~~~HP  237 (276)
                      +...+..|..-+.    .++|.+|+.+|++++.. +.+.    .+++.|+..|... |     +.++|+.+|+.-. ...
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~-~~g  198 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTG----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC-LEG  198 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTT----HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH-HHT
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCH----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH-HcC
Confidence            5667788888887    88899999999998885 2222    3888899988653 4     8899999999888 455


Q ss_pred             CHHHHHH
Q 023865          238 SKNIRRQ  244 (276)
Q Consensus       238 d~qVRqQ  244 (276)
                      ++.-...
T Consensus       199 ~~~A~~~  205 (212)
T 3rjv_A          199 FDTGCEE  205 (212)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            5554444

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=95.70  E-value=0.054  Score=49.11  Aligned_cols=65  Identities=9%  Similarity=-0.041  Sum_probs=54.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023865          172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI  241 (276)
Q Consensus       172 yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV  241 (276)
                      +..+. ..++|++..|...|+.++...|.+.    .+++.++..+...|+.++|+.+|+.....||+..+
T Consensus        17 ~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~----~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~l   81 (530)
T 2ooe_A           17 SILIR-EAQNQPIDKARKTYERLVAQFPSSG----RFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDL   81 (530)
T ss_dssp             HHHHH-HHHSSCHHHHHHHHHHHHTTCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHH
T ss_pred             HHHHH-HHHhCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHH
Confidence            33444 3678999999999999999776553    58888999999999999999999999988897654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.65  E-value=0.045  Score=46.80  Aligned_cols=67  Identities=13%  Similarity=0.133  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      .+...+..|..-+.+|+|.+|+.+|..++......  .+.-.++.+.++..|...|+.++|+.+|++..
T Consensus       134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  202 (434)
T 4b4t_Q          134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR  202 (434)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            36677888999999999999999999998665533  44556888999999999999999999998764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=95.42  E-value=0.065  Score=45.17  Aligned_cols=57  Identities=9%  Similarity=0.000  Sum_probs=28.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       174 aG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      -|......|+|..|++.|+.++...|.+..   .+.+.++..+...|+.++|+.+|+...
T Consensus       105 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~  161 (308)
T 2ond_A          105 YADYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEGIKSGRMIFKKAR  161 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHhccccCcc---HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            344444555555555555555553332211   145555555555555555555555555

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=95.36  E-value=0.095  Score=44.16  Aligned_cols=65  Identities=14%  Similarity=-0.026  Sum_probs=39.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhC--CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          172 FELGQKAYGKGMYGRAIEFLEGALTII--PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       172 yeaG~aALerGdY~qAIelLE~Al~~~--~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      +.-|..-...|++..|+.+|+.++...  ++...  ..+...++..+...|+.++|+.+++...+.+|+
T Consensus       207 ~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~--~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~  273 (308)
T 2ond_A          207 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS--GEIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence            333444556677777777777777642  22111  245555566666777777777777776666664

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.20  E-value=0.34  Score=39.63  Aligned_cols=80  Identities=18%  Similarity=0.174  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHhcCCHHH---HHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGR---AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~q---AIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ  244 (276)
                      .+..|+-|-......+-..   +|.+|+..+....+.  .--+..++||.+|.+.|+..+|...|..|....|+-.   |
T Consensus        35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~--~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~---Q  109 (126)
T 1nzn_A           35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN---Q  109 (126)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH---H
Confidence            5667777777777776666   999999988854221  2236899999999999999999999999998888753   5


Q ss_pred             HHHHHHhh
Q 023865          245 AADLRYIL  252 (276)
Q Consensus       245 AKqLLyIL  252 (276)
                      |+.|...+
T Consensus       110 A~~Lk~~i  117 (126)
T 1nzn_A          110 AKELERLI  117 (126)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.19  E-value=0.071  Score=50.50  Aligned_cols=73  Identities=12%  Similarity=0.032  Sum_probs=62.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023865          172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR  249 (276)
Q Consensus       172 yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL  249 (276)
                      ...|..++-+|++..|+.+|++|+.+.+  +   --+.+++..+|.-.|+.++|++.|.+-..-.|...+-.|++.+.
T Consensus       281 ~alal~~l~~gd~d~A~~~l~rAl~Ln~--s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l~  353 (372)
T 3ly7_A          281 QIKAVSALVKGKTDESYQAINTGIDLEM--S---WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGI  353 (372)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCC--C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHHSS
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCC--C---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHHhCce
Confidence            3446667788999999999999999852  3   24778999999999999999999988777999999999998874

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=95.11  E-value=0.16  Score=45.49  Aligned_cols=66  Identities=17%  Similarity=0.127  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCC
Q 023865          167 TAQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       167 ~ae~~yeaG~aALe----rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      .....+..|..-+.    .++|.+|+.+|++++...   .   ..++..|+..|..    .|+.++|+.+|++.....|+
T Consensus       362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---L---SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---C---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            35567777888888    899999999999998842   1   4799999999998    89999999999999877755

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.90  E-value=0.098  Score=38.85  Aligned_cols=48  Identities=10%  Similarity=-0.099  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAY  216 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAY  216 (276)
                      ....+-.|..+|++|+|.+||.+++.++...|. ++--..++-.+..|.
T Consensus        43 ~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i~~~I~~A~   90 (93)
T 3bee_A           43 EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTIIESINKAK   90 (93)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHHHHHHHHH
Confidence            566788899999999999999999999998888 665555555555443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=94.88  E-value=0.015  Score=40.11  Aligned_cols=56  Identities=16%  Similarity=0.246  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      ..+..|...+..|+|..|++.|+.++...|.+..    +..+        +...+|+..|+++...+|
T Consensus        37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~--------~~~~~a~~~~~~~~~~~p   92 (99)
T 2kc7_A           37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA----LQAR--------KMVMDILNFYNKDMYNQL   92 (99)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH----HHHH--------HHHHHHHHHHCCTTHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH----HHHH--------HHHHHHHHHHHHHhccCc
Confidence            6788899999999999999999999998776655    3322        666777777776654444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=94.57  E-value=0.18  Score=43.64  Aligned_cols=74  Identities=7%  Similarity=-0.018  Sum_probs=52.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHH-HHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLA-MAYEANNRHADCIALYKQLESNHPSKNIRRQA  245 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLA-tAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQA  245 (276)
                      .+..|...+..|+|.+|++.|++++...+.+... ..+.+.+. .++...|+.++||..|++-.+-.|+..-+..+
T Consensus       337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~  411 (472)
T 4g1t_A          337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAK-QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM  411 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH-HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred             hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH
Confidence            3567888999999999999999999865433221 11222222 34557899999999999988677776554443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=94.53  E-value=0.34  Score=43.42  Aligned_cols=60  Identities=15%  Similarity=0.195  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLE  233 (276)
Q Consensus       168 ae~~yeaG~aALe----rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~  233 (276)
                      +...+..|...+.    .++|.+|+.+|++++..   +   -..+++.|+..|..    .++.++|+.+|++..
T Consensus        75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~  142 (490)
T 2xm6_A           75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK---G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAA  142 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            4455555666555    66666666666666552   1   12466666666665    566666666666665

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=93.87  E-value=0.11  Score=43.41  Aligned_cols=79  Identities=10%  Similarity=0.034  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023865          168 AQLMFELGQKAYGKG---MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (276)
Q Consensus       168 ae~~yeaG~aALerG---dY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ  244 (276)
                      .+..|+-+-......   +...+|.+|+..+...+...   -+-.++||.+|.+.|+..+|...|..|....|+-.   |
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~---Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~---Q  113 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR---RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK---Q  113 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH---H
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh---HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH---H
Confidence            455666666666554   55689999999998654333   37899999999999999999999999997777764   5


Q ss_pred             HHHHHHhh
Q 023865          245 AADLRYIL  252 (276)
Q Consensus       245 AKqLLyIL  252 (276)
                      |+.|...+
T Consensus       114 A~~Lk~~I  121 (134)
T 3o48_A          114 VGALKSMV  121 (134)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=93.31  E-value=0.32  Score=44.08  Aligned_cols=55  Identities=16%  Similarity=0.138  Sum_probs=45.2

Q ss_pred             cCCHH-------HHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          181 KGMYG-------RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       181 rGdY~-------qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      .|++.       .|+..|+.++....+.+   ..+.+.++..|...|+.++|+.+|++.....|+
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~---~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  353 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI  353 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc
Confidence            79987       89999999997333332   468899999999999999999999999966664

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.16  E-value=0.29  Score=41.22  Aligned_cols=80  Identities=11%  Similarity=0.034  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH
Q 023865          167 TAQLMFELGQKAYGKGM---YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR  243 (276)
Q Consensus       167 ~ae~~yeaG~aALerGd---Y~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRq  243 (276)
                      +.+..|+-+-......+   -..+|.+||..+...+...+   +-.++||.+|.+.|+..+|..+|..|....|+-.   
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~R---dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~---  111 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRR---ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK---  111 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHH---HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH---
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchh---HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH---
Confidence            45566777766666554   45799999999986655444   6899999999999999999999999998888753   


Q ss_pred             HHHHHHHhh
Q 023865          244 QAADLRYIL  252 (276)
Q Consensus       244 QAKqLLyIL  252 (276)
                      ||+.|...+
T Consensus       112 QA~~Lk~~I  120 (144)
T 1y8m_A          112 QVGALKSMV  120 (144)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555444

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=93.03  E-value=0.021  Score=51.91  Aligned_cols=51  Identities=18%  Similarity=0.074  Sum_probs=12.3

Q ss_pred             HHHHhcCCH---HHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC-----ChHHHHHHHHHHH
Q 023865          176 QKAYGKGMY---GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-----RHADCIALYKQLE  233 (276)
Q Consensus       176 ~aALerGdY---~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G-----q~EkAIALCQ~L~  233 (276)
                      ...+..|++   .+|+++|++++..    +   ..+++.|+.+|...|     +.++|+.+|++..
T Consensus        43 ~~y~~~g~~~d~~~A~~~~~~A~~~----~---~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa  101 (452)
T 3e4b_A           43 DIQVGTRDPAQIKQAEATYRAAADT----S---PRAQARLGRLLAAKPGATEAEHHEAESLLKKAF  101 (452)
T ss_dssp             -----------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCCCHHHHHHHHHHHHhC----C---HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHH
Confidence            333444444   4555555554432    1   124455555444443     4445555555544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=92.74  E-value=0.25  Score=42.51  Aligned_cols=63  Identities=8%  Similarity=0.019  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC-----chHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF-----FGGEIQIWLAMAYEANNRHADCIALYKQL  232 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~-----lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L  232 (276)
                      ..++....++++|.|+.|+-+...+++..+.+..     .--++++|++.||-+.|+.-+|...|++-
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA   89 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA   89 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            4678899999999999999999998876643332     23478999999999999999999999883

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=92.66  E-value=0.28  Score=48.72  Aligned_cols=73  Identities=18%  Similarity=0.055  Sum_probs=55.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY  250 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy  250 (276)
                      ....+ .||..|+|..|..+|.....    ....-.+.++|+++|+.+.|+.++|..+|+.+. ++ ..---.-|.+.|.
T Consensus       289 e~~~r-~Alr~~d~~~a~~~~~~l~~----~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a-~~-~~fYg~lAa~~Lg  361 (618)
T 1qsa_A          289 ERRVR-MALGTGDRRGLNTWLARLPM----EAKEKDEWRYWQADLLLERGREAEAKEILHQLM-QQ-RGFYPMVAAQRIG  361 (618)
T ss_dssp             HHHHH-HHHHHTCHHHHHHHHHHSCT----TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TS-CSHHHHHHHHHTT
T ss_pred             HHHHH-HHHHCCCHHHHHHHHHHccc----cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh-cC-CChHHHHHHHHcC
Confidence            35555 58899999999999987443    222346799999999999999999999999999 54 4444555555553

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.41  E-value=1.1  Score=41.08  Aligned_cols=74  Identities=23%  Similarity=0.131  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCch------------------HHHHHHHHHHHHHcCChHHHHHH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG------------------GEIQIWLAMAYEANNRHADCIAL  228 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lG------------------GEAQmwLAtAYqa~Gq~EkAIAL  228 (276)
                      .++..+..|..+...|+...|++.|+.|+......--.|                  ..+...++.++.+.|+..+|+..
T Consensus       114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            456678888899999999999999999998875432111                  14455678899999999999999


Q ss_pred             HHHHHHhCCCHH
Q 023865          229 YKQLESNHPSKN  240 (276)
Q Consensus       229 CQ~L~~~HPd~q  240 (276)
                      |+.+...||-.+
T Consensus       194 l~~~~~~~P~~E  205 (388)
T 2ff4_A          194 LEALTFEHPYRE  205 (388)
T ss_dssp             HHHHHHHSTTCH
T ss_pred             HHHHHHhCCCCH
Confidence            999998999655

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=90.47  E-value=1.9  Score=32.80  Aligned_cols=63  Identities=13%  Similarity=0.094  Sum_probs=51.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCHHHHH
Q 023865          174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPSKNIRR  243 (276)
Q Consensus       174 aG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HPd~qVRq  243 (276)
                      .|..-+..+.+.+|+.+|++++..   .   ...+++.|+..|..    .++.++|+.+|++-. ...++...-
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~---g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~g~~~a~~   97 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL---N---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC-GLNDQDGCL   97 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTTCHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC---C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH-cCCCHHHHH
Confidence            666667778899999999999985   2   24799999999998    899999999999998 566665443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=90.41  E-value=0.44  Score=33.81  Aligned_cols=34  Identities=18%  Similarity=0.214  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          206 GEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       206 GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ..+.+.|+.+|...|+.++|+..|++.+...|+.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   40 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDY   40 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            4689999999999999999999999999888863

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=88.32  E-value=1.3  Score=39.59  Aligned_cols=69  Identities=12%  Similarity=0.066  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHhcCCHH-HHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCHH
Q 023865          168 AQLMFELGQKAYGKGMYG-RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN--RHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~-qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~G--q~EkAIALCQ~L~~~HPd~q  240 (276)
                      +...+..-.+.+.+|.|+ +|+...+.++...|.+..    +...-..+....|  +.++|+.+|..++..+|..-
T Consensus        32 y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~t----aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y  103 (306)
T 3dra_A           32 YKQIMGLLLALMKAEEYSERALHITELGINELASHYT----IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY  103 (306)
T ss_dssp             HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHH----HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH
Confidence            445566666778889995 899999999998888776    8888889999999  99999999999998888753

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=88.25  E-value=2.3  Score=38.48  Aligned_cols=65  Identities=11%  Similarity=-0.057  Sum_probs=44.4

Q ss_pred             HHHHHHHHhc----CCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023865          172 FELGQKAYGK----GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMA-Y--EANNRHADCIALYKQLESNHPSKNIRRQ  244 (276)
Q Consensus       172 yeaG~aALer----GdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtA-Y--qa~Gq~EkAIALCQ~L~~~HPd~qVRqQ  244 (276)
                      +..|..-...    ++|.+|+.+|++++   + +.   ..+++.|+.. |  ...|+.++|+.+|++.. ...++...-+
T Consensus       217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~-g~---~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g~~~A~~~  288 (452)
T 3e4b_A          217 DSVARVLGDATLGTPDEKTAQALLEKIA---P-GY---PASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AADQPRAELL  288 (452)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHG---G-GS---THHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHc---C-CC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCCCHHHHHH
Confidence            5555544332    58888888888877   2 22   2588888888 5  57888888888888887 5555554433

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=87.80  E-value=1.9  Score=39.50  Aligned_cols=22  Identities=9%  Similarity=-0.070  Sum_probs=10.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhh
Q 023865          175 GQKAYGKGMYGRAIEFLEGALT  196 (276)
Q Consensus       175 G~aALerGdY~qAIelLE~Al~  196 (276)
                      +...+..|+++.|.+.|+.+.+
T Consensus       143 vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B          143 IEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHh
Confidence            3444445555555555544433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=87.58  E-value=2  Score=39.34  Aligned_cols=74  Identities=8%  Similarity=-0.028  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC----------hHHHHHHHH
Q 023865          162 AERRATAQLMFELGQKAYGKGMYG-RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR----------HADCIALYK  230 (276)
Q Consensus       162 a~~~e~ae~~yeaG~aALerGdY~-qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq----------~EkAIALCQ  230 (276)
                      +.+...+......-......|.|+ +|+.+++.++...|.+..    |..+--.+....|+          .++++.+|.
T Consensus        23 ~~ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~yt----aWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~   98 (331)
T 3dss_A           23 EQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFAT----LWNCRREVLQHLETEKSPEESAALVKAELGFLE   98 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHH----HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHH----HHHHHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence            334455556666666677899999 799999999997776655    66665566666555          589999999


Q ss_pred             HHHHhCCCH
Q 023865          231 QLESNHPSK  239 (276)
Q Consensus       231 ~L~~~HPd~  239 (276)
                      .+...||..
T Consensus        99 ~~L~~~PKn  107 (331)
T 3dss_A           99 SCLRVNPKS  107 (331)
T ss_dssp             HHHHHCTTC
T ss_pred             HHHHhCCCC
Confidence            999888843

>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*

Probab=87.31  E-value=1.1  Score=44.46  Aligned_cols=54  Identities=20%  Similarity=0.267  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADC  225 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkA  225 (276)
                      +...++.|+.||..|+|+-|.+++..++...|.+.    +|+.++|.||...|...+.
T Consensus       449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~----~a~~l~a~~~~~l~~~~~~  502 (658)
T 2cfu_A          449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNR----AARELQADALEQLGYQAEN  502 (658)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHHHhccC
Confidence            67899999999999999999999999998776665    4999999999998865543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=86.80  E-value=6.6  Score=36.45  Aligned_cols=68  Identities=16%  Similarity=0.026  Sum_probs=54.9

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCC----H-----HHHHHHHHHHHh
Q 023865          182 GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-NRHADCIALYKQLESNHPS----K-----NIRRQAADLRYI  251 (276)
Q Consensus       182 GdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~-Gq~EkAIALCQ~L~~~HPd----~-----qVRqQAKqLLyI  251 (276)
                      |+...|.++|++|+++.|....   .+.+..+..|... |+.+.|.+++++-..--|.    .     --|++|+.||..
T Consensus       218 Gd~ekA~~~ferAL~LnP~~~i---d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~  294 (301)
T 3u64_A          218 GGMEKAHTAFEHLTRYCSAHDP---DHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQKRARWLKAH  294 (301)
T ss_dssp             CCHHHHHHHHHHHHHHCCTTCS---HHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHHH
Confidence            9999999999999998876544   4999999999885 9999999999998833333    2     367888888865


Q ss_pred             h
Q 023865          252 L  252 (276)
Q Consensus       252 L  252 (276)
                      +
T Consensus       295 ~  295 (301)
T 3u64_A          295 V  295 (301)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=86.53  E-value=0.4  Score=40.12  Aligned_cols=55  Identities=9%  Similarity=0.060  Sum_probs=45.7

Q ss_pred             CCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhCCCHH
Q 023865          182 GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH----------ADCIALYKQLESNHPSKN  240 (276)
Q Consensus       182 GdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~----------EkAIALCQ~L~~~HPd~q  240 (276)
                      ++|.+|++.++.+++..|.+.    ++.+.+..+|...|+.          ++||+.|++-++-.|+.-
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~a----ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~   80 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLDA----DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD   80 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH
Confidence            568899999999999776654    4888888899998875          599999999998888754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=85.20  E-value=2.2  Score=47.45  Aligned_cols=75  Identities=17%  Similarity=0.128  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023865          156 KVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN  235 (276)
Q Consensus       156 ~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~  235 (276)
                      +.|.+-+++......-++-|.+-+..|+|.+||..++++      +.   ....+-++.+|+..|+.++||..++.-.+.
T Consensus      1093 drAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD---~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A         1093 DRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DD---PSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            346666677777788889999999999999999999885      21   236677899999999999999999875544


Q ss_pred             CCCH
Q 023865          236 HPSK  239 (276)
Q Consensus       236 HPd~  239 (276)
                      -|++
T Consensus      1164 ~~e~ 1167 (1630)
T 1xi4_A         1164 ARES 1167 (1630)
T ss_pred             cccc
Confidence            4444

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=82.94  E-value=3.3  Score=34.06  Aligned_cols=67  Identities=15%  Similarity=0.166  Sum_probs=58.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 023865          176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL  252 (276)
Q Consensus       176 ~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL  252 (276)
                      ...+.||+|..|..++++.|      ++   -+-=|+|.|--..|-..++-..--.|. ...+|+.++.|..+...+
T Consensus        48 sSLmNrG~Yq~Al~l~~~~c------~p---dlepw~ALce~rlGl~s~le~rL~~la-~sg~p~~q~Fa~g~req~  114 (116)
T 2p58_C           48 SSLMNRGDYASALQQGNKLA------YP---DLEPWLALCEYRLGLGSALESRLNRLA-RSQDPRIQTFVNGMREQL  114 (116)
T ss_dssp             HHHHHTTCHHHHHHHHTTSC------CG---GGHHHHHHHHHHHTCHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHcchhHHHHHHhcCCCC------Cc---hHHHHHHHHHHhcccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHh
Confidence            45678999999999999977      33   267799999999999999999998898 899999999999887654

>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}

Probab=82.40  E-value=5.6  Score=32.00  Aligned_cols=76  Identities=18%  Similarity=0.326  Sum_probs=43.7

Q ss_pred             cccccCCCCCCccc--CCCCCCCcccccHHHHHHHHHHHH--HHHHHHHHHHHH-HhhhhhccCcchhhhhhhHHHHHHH
Q 023865           75 VNAVDFDAGSSDEE--NGNGNGEKEEYDWEKEMRRRVKEI--EEMRELEKKAEE-LQSKAEEDDSESEAKEETEEEKRMR  149 (276)
Q Consensus        75 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r  149 (276)
                      .||.||+.-+.+|=  --|--.|.++.|+..|+.+|++..  ++.+..-++..+ +++-++-=.      -+.=.++|.-
T Consensus         6 ~~a~DFSk~Sd~ELl~mAG~V~p~~~~dY~mEv~KR~~~M~~k~~k~F~~~~~~~~~kN~~kMS------~ke~~~~r~a   79 (100)
T 2xrh_A            6 TMAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPEDKRKAFHKQLHEYATKNTDKMT------VADFEARQKA   79 (100)
T ss_dssp             CCCCSSTTSCHHHHHHTTTTSCGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTSC------HHHHHHHHHH
T ss_pred             hcccchhhcCHHHHHHHHCcCChhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhCC------HHHHHHHHHH
Confidence            58999985544443  345556778899999999999864  333333333322 223222222      2222455566


Q ss_pred             HHHHHHH
Q 023865          150 VRRELEK  156 (276)
Q Consensus       150 v~~~L~~  156 (276)
                      |+..|++
T Consensus        80 I~eal~k   86 (100)
T 2xrh_A           80 VKEALKK   86 (100)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666655

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=82.28  E-value=1  Score=41.86  Aligned_cols=80  Identities=14%  Similarity=0.011  Sum_probs=45.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhCC--------CCCC-chHHHHH--------HHHHHHHHcCChHHHHHHHHHHH-
Q 023865          172 FELGQKAYGKGMYGRAIEFLEGALTIIP--------RPTF-FGGEIQI--------WLAMAYEANNRHADCIALYKQLE-  233 (276)
Q Consensus       172 yeaG~aALerGdY~qAIelLE~Al~~~~--------~nS~-lGGEAQm--------wLAtAYqa~Gq~EkAIALCQ~L~-  233 (276)
                      -+.|..|+++|++..|+..|..+-....        .+.. +.--+.+        .-..+|...|+.++|+.+|+.+- 
T Consensus       685 ~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~  764 (814)
T 3mkq_A          685 RALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQR  764 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence            4678888888888888888776421110        0000 0000111        12446777888888888887653 


Q ss_pred             --------HhCCCHH------HHHHHHHHHHh
Q 023865          234 --------SNHPSKN------IRRQAADLRYI  251 (276)
Q Consensus       234 --------~~HPd~q------VRqQAKqLLyI  251 (276)
                              ++|..++      +++||+.|...
T Consensus       765 ~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~  796 (814)
T 3mkq_A          765 FSEAAFLGSTYGLGDNEVNDIVTKWKENLILN  796 (814)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHhCCChHHHHHHHHHHHHHHHhc
Confidence                    2344344      56777777544

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=81.52  E-value=3.1  Score=34.14  Aligned_cols=67  Identities=18%  Similarity=0.172  Sum_probs=58.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Q 023865          176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL  252 (276)
Q Consensus       176 ~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL  252 (276)
                      ...+.||+|..|..++++.|      ++   -+-=|+|.|--..|-..++-..--.|. ...+|+.++.|..+...+
T Consensus        47 sSLmNrG~Yq~Al~l~~~~c------~p---dlepw~ALce~rlGl~s~le~rL~~la-~sg~p~~q~Fa~g~req~  113 (115)
T 2uwj_G           47 SSLANQGRYQEALAFAHGNP------WP---ALEPWFALCEWHLGLGAALDRRLAGLG-GSSDPALADFAAGMRAQV  113 (115)
T ss_dssp             HHHHHTTCHHHHHGGGTTCC------CG---GGHHHHHHHHHHTTCHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred             HHHHcchhHHHHHHhcCCCC------Cc---hHHHHHHHHHHhcccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHh
Confidence            45678999999999999976      33   267799999999999999999998998 899999999999887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=80.66  E-value=2.8  Score=40.24  Aligned_cols=68  Identities=9%  Similarity=-0.033  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHhcCCHH-HHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhC
Q 023865          168 AQLMFELGQKAYGKGMYG-RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR----------HADCIALYKQLESNH  236 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~-qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq----------~EkAIALCQ~L~~~H  236 (276)
                      +........+-...|.|. +|++.++.++...|.+..    |..+-..++...|+          .++|+++|..++..+
T Consensus        28 y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~t----aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~  103 (567)
T 1dce_A           28 YQSATQAVFQKRQAGELDESVLELTSQILGANPDFAT----LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN  103 (567)
T ss_dssp             HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHH----HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC
Confidence            444444555556778776 669999999997777665    88888899999999          899999999999888


Q ss_pred             CCH
Q 023865          237 PSK  239 (276)
Q Consensus       237 Pd~  239 (276)
                      |..
T Consensus       104 pK~  106 (567)
T 1dce_A          104 PKS  106 (567)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	276
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 4/66 (6%)

Query: 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231
            EL  + Y  G +  A           P  T     + + L+  +    R          
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNT----GVLLLLSSIHFQCRRLDRSAHFSTL 58

Query: 232 LESNHP 237
               +P
Sbjct: 59  AIKQNP 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.77
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.45
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.37
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.28
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.25
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.23
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.19
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.15
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.15
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.09
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.08
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.07
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.06
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.03
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.91
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.9
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.9
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.87
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.86
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.81
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.75
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.71
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.7
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.64
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.61
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.6
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.58
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.52
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.5
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.49
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.48
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.21
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.14
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.72
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	96.54
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.47
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.3
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.22
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	96.2
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	95.95
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	95.78
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	95.62
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	95.47
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	94.82
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	94.25
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	93.98
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	93.58
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	93.12
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	92.37
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	90.73
d2ijqa1	145	Hypothetical protein rrnAC1037 {Haloarcula marismo	90.16
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	88.98
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	88.3
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	87.16
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	86.66
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	85.57
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	81.71

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=3.9e-08  Score=71.31  Aligned_cols=73  Identities=25%  Similarity=0.262  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC---CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP---TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~n---S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      +..-|+.|..+|++|+|.+||.+|++|+...+.+   ...-+++...|+.+|...|+.++||..|++..+-.|+..
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~   80 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ   80 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence            5667999999999999999999999999876543   222357888999999999999999999999887888754

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=2.8e-07  Score=70.02  Aligned_cols=67  Identities=18%  Similarity=0.103  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ++...+.|-.+|.+|+|..||.+|++++...|.+.    .+...++.+|...|+.++||..|++.+.-.|+
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~----~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~   70 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----VYYTNRALCYLKMQQPEQALADCRRALELDGQ   70 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC
Confidence            34456677777777777777777777777665543    36667777777777777777777777754554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=6.8e-07  Score=66.06  Aligned_cols=68  Identities=16%  Similarity=0.109  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ++...+.|..+|..|+|..||..|..++...|.+.    .+...++.+|...|+.++||..|...+...|+.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~   70 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH----VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW   70 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch----hhhhcccccccccccccccchhhhhHHHhccch
Confidence            44566778888888888888888888887554443    477888888888888888888888777666653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=2.6e-06  Score=64.85  Aligned_cols=67  Identities=13%  Similarity=0.027  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      +...+..|...+..|+|..|++.|+++++..|.+.    ++.+.++.+|...|+.++|+..|++....+|+
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~----~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~  110 (159)
T d1a17a_          44 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI----KGYYRRAASNMALGKFRAALRDYETVVKVKPH  110 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             hhhhhhhHHHHHhccccchHHHHHHHHHHHcccch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            33445566667777777777777777776544433    47778888888888888888888887766665

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.25  E-value=2e-06  Score=63.22  Aligned_cols=66  Identities=15%  Similarity=0.067  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ..|..|...+.+|+|..|+..|++++...|.+    ..+.++|+.+|...|+.++|+..+++.+.-+|+.
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   83 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER----EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   83 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccccccc----chhhhhhhhhhhhhhhHHHhhccccccccccccc
Confidence            35889999999999999999999999977655    3699999999999999999999999988788874

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.23  E-value=5.3e-06  Score=64.34  Aligned_cols=78  Identities=14%  Similarity=0.122  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHH-----------HHHHHHHHHHHcCChHHHHHHHH
Q 023865          162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGE-----------IQIWLAMAYEANNRHADCIALYK  230 (276)
Q Consensus       162 a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGE-----------AQmwLAtAYqa~Gq~EkAIALCQ  230 (276)
                      .++++.++...+.|..+|..|+|..||.++.+|+...+........           +.+-++.+|...|+.++||..|.
T Consensus         9 ~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~   88 (168)
T d1kt1a1           9 KEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD   88 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhh
Confidence            4566788889999999999999999999999999988776655332           23348999999999999999999


Q ss_pred             HHHHhCCCH
Q 023865          231 QLESNHPSK  239 (276)
Q Consensus       231 ~L~~~HPd~  239 (276)
                      +....+|+.
T Consensus        89 ~al~l~p~~   97 (168)
T d1kt1a1          89 KALGLDSAN   97 (168)
T ss_dssp             HHHHHCTTC
T ss_pred             hhhhcccch
Confidence            999778764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.6e-05  Score=61.99  Aligned_cols=71  Identities=20%  Similarity=0.033  Sum_probs=45.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CHHHHHHHHHH
Q 023865          174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP-SKNIRRQAADL  248 (276)
Q Consensus       174 aG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP-d~qVRqQAKqL  248 (276)
                      .|...+..|+|..||.+++.++...|.+.    .+.+.++.+|...|+.++|+..|+...+-+| ++.++..-..+
T Consensus        68 la~~y~k~~~~~~A~~~~~~al~~~p~~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~  139 (170)
T d1p5qa1          68 LAMCHLKLQAFSAAIESCNKALELDSNNE----KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  139 (170)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHhhhhcccccchhhhhhhccccch----hhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45555667777777777777776655443    3677777777777777777777777766665 45554444333

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.15  E-value=8.8e-06  Score=62.48  Aligned_cols=79  Identities=15%  Similarity=0.016  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQAAD  247 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQAKq  247 (276)
                      ...++.|...+..|+|..||+.+..++...|.+.    ++.+.++.+|...|+.++|+..|++..+-+|+ ++++..-..
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~----ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~  143 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV----KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL  143 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhh----hhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3467899999999999999999999999877665    59999999999999999999999999988874 666665554


Q ss_pred             HHHh
Q 023865          248 LRYI  251 (276)
Q Consensus       248 LLyI  251 (276)
                      +...
T Consensus       144 ~~~k  147 (153)
T d2fbna1         144 CVNK  147 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=5.3e-06  Score=64.74  Aligned_cols=63  Identities=16%  Similarity=0.114  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      .+..|...+..|+|..||..|+.++...|.+.    .+.+.|+.+|...|+.++|+..|+...+..|
T Consensus        74 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p  136 (259)
T d1xnfa_          74 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN----YAHLNRGIALYYGGRDKLAQDDLLAFYQDDP  136 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HhhhchHHHHHHHHHHhhhhhhHHHHHHhhhh----hhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc
Confidence            34444445555555555555555554433322    2444455555555555555555554444444

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.8e-06  Score=67.16  Aligned_cols=65  Identities=17%  Similarity=0.199  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      ...+..|...+..|+|..|+..|++++...|.+    ..+.+.|+.+|...|+.++|+..|+......|
T Consensus        34 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~   98 (388)
T d1w3ba_          34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL----AEAYSNLGNVYKERGQLQEAIEHYRHALRLKP   98 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHhhhhcccccccccccccccccc
Confidence            344555555555555555555555555544332    23555555555555555555555555554333

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=4.6e-06  Score=62.36  Aligned_cols=64  Identities=22%  Similarity=0.224  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES  234 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~  234 (276)
                      .|...-+.|...|.+|+|.+||..|..++...|.+.    .+...++.+|...|+.++|+..|+..++
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM----TYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH----HHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            355566899999999999999999999999877653    4899999999999999999999999664

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.07  E-value=1.8e-05  Score=60.72  Aligned_cols=77  Identities=18%  Similarity=0.163  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchH------------HHHHHHHHHHHHcCChHHHHHHHH
Q 023865          163 ERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG------------EIQIWLAMAYEANNRHADCIALYK  230 (276)
Q Consensus       163 ~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGG------------EAQmwLAtAYqa~Gq~EkAIALCQ  230 (276)
                      ++++.+....+.|-..|.+|+|..||..+..++...+.......            .+..-++.+|...|+.++|+..|+
T Consensus        12 e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~   91 (153)
T d2fbna1          12 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS   91 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhh
Confidence            56677888889999999999999999999999987764433221            244459999999999999999999


Q ss_pred             HHHHhCCCH
Q 023865          231 QLESNHPSK  239 (276)
Q Consensus       231 ~L~~~HPd~  239 (276)
                      ..+..+|+.
T Consensus        92 ~al~~~p~~  100 (153)
T d2fbna1          92 KVLKIDKNN  100 (153)
T ss_dssp             HHHHHSTTC
T ss_pred             ccccccchh
Confidence            988778754

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=6e-06  Score=66.52  Aligned_cols=65  Identities=20%  Similarity=0.245  Sum_probs=56.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      .|+.|...+.+|+|..|+..|++++...|.+    ..+...|+.+|...|+.++|+..|++..+.+|+.
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   86 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH----MEAWQYLGTTQAENEQELLAISALRRCLELKPDN   86 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHhhhcccccc
Confidence            5788999999999999999999999866554    3589999999999999999999999988777763

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=2.5e-05  Score=60.89  Aligned_cols=54  Identities=13%  Similarity=0.108  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADC  225 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkA  225 (276)
                      +...+..|...+..|+|..|+..|+.++...|.+.    .++..|+.++...++..+.
T Consensus        96 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~----~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          96 EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK----AAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH----HHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHH
Confidence            66788899999999999999999999999877543    4777788887776655543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=5.7e-05  Score=57.15  Aligned_cols=72  Identities=13%  Similarity=0.040  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      -++.|+...+.|-..|.+|+|..|+..|.+++...|.+    ..+.+.++.+|...|+.++|+..|++..+-.|+.
T Consensus         6 ~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~   77 (159)
T d1a17a_           6 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY   77 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhh----hhhhhhhHHHHHhccccchHHHHHHHHHHHcccc
Confidence            45677888899999999999999999999999987654    3599999999999999999999999998667764

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.90  E-value=6.4e-05  Score=57.59  Aligned_cols=73  Identities=16%  Similarity=0.175  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH-HHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK-NIRRQ  244 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~-qVRqQ  244 (276)
                      +...++.|..-+..|+|.+||..+..|++..|.+.    .+.+.++.||...|+.++|+..|++..+-.|+- .+...
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~----~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~  150 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT----KALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE  150 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhh----hHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            45567789999999999999999999999776554    599999999999999999999999999777653 44333

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=5.3e-05  Score=56.37  Aligned_cols=85  Identities=15%  Similarity=0.209  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF---GGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~l---GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ  244 (276)
                      +...+..|...+..|+|..||+.++.++...|.+...   -+++.+-|+.+|.+.|+.++|+.+|++-...||++++...
T Consensus        38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~  117 (128)
T d1elra_          38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK  117 (128)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHH
Confidence            4567888999999999999999999999987765443   2467788999999999999999999887668999998877


Q ss_pred             HHHHHHhh
Q 023865          245 AADLRYIL  252 (276)
Q Consensus       245 AKqLLyIL  252 (276)
                      ..++-.+|
T Consensus       118 l~~~~k~l  125 (128)
T d1elra_         118 CQQAEKIL  125 (128)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76665554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=3.5e-05  Score=56.52  Aligned_cols=68  Identities=19%  Similarity=0.036  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+.+|+|..||..++.++...|.+..    +.+.++.+|...|+.++|+..|++.++..|+.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~  104 (117)
T d1elwa_          37 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK----GYSRKAAALEFLNRFEEAKRTYEEGLKHEANN  104 (117)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred             hhhhhcccccccccccccccchhhhhHHHhccchhh----HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence            556788899999999999999999999998776554    99999999999999999999999999777774

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=1.4e-05  Score=60.35  Aligned_cols=66  Identities=12%  Similarity=-0.030  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      +...+..|...+..|+|..||..|++|+++.|.+.    .+.+.|+.+|...|+.++|+..|++...-.|
T Consensus        38 ~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~----~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p  103 (201)
T d2c2la1          38 AVYYTNRALCYLKMQQPEQALADCRRALELDGQSV----KAHFFLGQCQLEMESYDEAIANLQRAYSLAK  103 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            55678889999999999999999999999766553    5899999999999999999999998764333

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=2.8e-05  Score=61.28  Aligned_cols=67  Identities=18%  Similarity=0.252  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      +...+..|...+..|+|.+|+.+|+++++..|.+    ..+.+.|+.+|...|+.++|+..|++..+-+|+
T Consensus       305 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~  371 (388)
T d1w3ba_         305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF----AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             chhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3456777888999999999999999999876544    469999999999999999999999998877886

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.75  E-value=0.00017  Score=57.75  Aligned_cols=79  Identities=16%  Similarity=0.176  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------hCCCHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES-------NHPSKN  240 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~-------~HPd~q  240 (276)
                      .......+...+..|+|..||..|+.++...|.+-.    +...|..+|.+.|+..+|+..|+++..       -.|.++
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~----~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~  142 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREP----LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  142 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHH----HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence            344667799999999999999999999998776654    999999999999999999999998732       468888


Q ss_pred             HHHHHHHHHH
Q 023865          241 IRRQAADLRY  250 (276)
Q Consensus       241 VRqQAKqLLy  250 (276)
                      ++.-...+|.
T Consensus       143 l~~l~~~il~  152 (179)
T d2ff4a2         143 LRALNERILR  152 (179)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            8777776654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=0.00019  Score=55.59  Aligned_cols=69  Identities=20%  Similarity=0.231  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      .+...|..|...+..|+|..|++.|++++...|.+    ..+...|+.+|...|+.++|+..|++.++.+|+.
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  104 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY  104 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC----HHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhh
Confidence            46678999999999999999999999999987765    3589999999999999999999999999888864

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.70  E-value=0.00016  Score=55.79  Aligned_cols=69  Identities=13%  Similarity=0.068  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      +...++.|..-+..|+|..||..++.++...|.+.    .+.++++++|...|+.++|+..|++...-+|+..
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~----~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~  132 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE----KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK  132 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhhcccchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            44566789999999999999999999999877664    4999999999999999999999999997676543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=4.4e-05  Score=57.86  Aligned_cols=78  Identities=18%  Similarity=0.170  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHh---cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023865          168 AQLMFELGQKAYG---KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ  244 (276)
Q Consensus       168 ae~~yeaG~aALe---rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ  244 (276)
                      ....|+-|...+.   .++|.+||.+|++++...+.+..  ..+.+.|+.+|...|+.++|+..|++..+-.|+..   +
T Consensus        33 ~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~--~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~---~  107 (122)
T d1nzna_          33 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ--RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN---Q  107 (122)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---H
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCH---H
Confidence            3456677777665   45667899999999985543322  35889999999999999999999999998888764   3


Q ss_pred             HHHHHH
Q 023865          245 AADLRY  250 (276)
Q Consensus       245 AKqLLy  250 (276)
                      |..++.
T Consensus       108 A~~l~~  113 (122)
T d1nzna_         108 AKELER  113 (122)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444444

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.61  E-value=7.7e-05  Score=63.58  Aligned_cols=65  Identities=14%  Similarity=0.065  Sum_probs=58.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH
Q 023865          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR  243 (276)
Q Consensus       175 G~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRq  243 (276)
                      ++.||.+|+|.+||+.|+.++...|.+..    ++..|+..|...|+.++|++.|+.....+|+....-
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~----ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~   67 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDAS----LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA   67 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            67899999999999999999997766655    999999999999999999999999998888765443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.60  E-value=0.00027  Score=56.46  Aligned_cols=75  Identities=23%  Similarity=0.126  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCc------------------hHHHHHHHHHHHHHcCChHHHHH
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF------------------GGEIQIWLAMAYEANNRHADCIA  227 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~l------------------GGEAQmwLAtAYqa~Gq~EkAIA  227 (276)
                      ..|+..+..|..++.+|++..|++.|..|+.+.+..-..                  ..++...++.+|...|+.++|+.
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            467889999999999999999999999999987644221                  12677889999999999999999


Q ss_pred             HHHHHHHhCCCHH
Q 023865          228 LYKQLESNHPSKN  240 (276)
Q Consensus       228 LCQ~L~~~HPd~q  240 (276)
                      +|+.++..+|..+
T Consensus        89 ~~~~al~~~P~~e  101 (179)
T d2ff4a2          89 ELEALTFEHPYRE  101 (179)
T ss_dssp             HHHHHHHHSTTCH
T ss_pred             HHHHHHHhCCccH
Confidence            9999998999755

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.58  E-value=7.5e-05  Score=54.46  Aligned_cols=62  Identities=18%  Similarity=0.137  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      +...+..|...+..|+|.+||..|++++...|.+.    .+.+.|+.+|...|+.++|+..+++..
T Consensus        50 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          50 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI----AVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhHHHhhcccccccccccccc----cchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            55678889999999999999999999999877654    599999999999999999999998764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00015  Score=57.44  Aligned_cols=62  Identities=10%  Similarity=0.099  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       170 ~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ..|+.|..++++|+|..||+.|+.+   .+++    ..+.+.|+.+|...|+.++|+..|++-++..|+
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~----~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~   68 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSAV---QDPH----SRICFNIGCMYTILKNMTEAEKAFTRSINRDKH   68 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTS---SSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhc---CCCC----HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh
Confidence            4445555555555555555555432   1111    134555555555555555555555555544443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=0.00075  Score=51.77  Aligned_cols=63  Identities=21%  Similarity=0.070  Sum_probs=52.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC-chHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF-FGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       171 ~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~-lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      ..-.|..++.+|+|.+|++++++++...|.+.. .-..+...|+.+|...|+.++|+.+|+...
T Consensus        15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   78 (366)
T d1hz4a_          15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE   78 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            333588899999999999999999997776533 234577889999999999999999999865

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.49  E-value=0.00033  Score=53.08  Aligned_cols=69  Identities=16%  Similarity=0.009  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCc--------hHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF--------GGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~l--------GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      ...+-..+..|...|..|+|..||+.+++++++.+.....        -..+..-++.+|...|+.++|+..|+.-.
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            3445667788999999999999999999999988755432        13456678999999999999999998876

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00024  Score=56.91  Aligned_cols=68  Identities=13%  Similarity=0.083  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|...+..|+|..|++.|+++++..|.+    ..+.+.|+.+|...|+.++||..|++.++-+|+.
T Consensus       206 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  273 (323)
T d1fcha_         206 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGY----IRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  273 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             ccchhhhhhcccccccchhHHHHHHHHHHHhhcc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC
Confidence            5566778888888999999999999888865543    4588888889999999999999888877555543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00077  Score=53.23  Aligned_cols=61  Identities=11%  Similarity=-0.015  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      ...|..|..-+..|+|..|++.|++|++..|..    ..+...++++|...|+.++|+..|++-.
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~----~~a~~~~g~~~~~~g~~~~A~~~~~kAl   97 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYFQRGMLYYQTEKYDLAIKDLKEAL   97 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh----hhhHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            347899999999999999999999999977655    3499999999999999999999999876

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.14  E-value=0.00055  Score=52.18  Aligned_cols=71  Identities=8%  Similarity=0.031  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCC------------CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023865          169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP------------TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH  236 (276)
Q Consensus       169 e~~yeaG~aALerGdY~qAIelLE~Al~~~~~n------------S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H  236 (276)
                      +.....|...+.+|+|..||..+.+++...+..            .+.-..+.+-|+.+|...|+.++||..|.+.+.-+
T Consensus        28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  107 (169)
T d1ihga1          28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  107 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh
Confidence            334567888999999999999999988644311            12233456678999999999999999999999767


Q ss_pred             CCH
Q 023865          237 PSK  239 (276)
Q Consensus       237 Pd~  239 (276)
                      |+.
T Consensus       108 p~~  110 (169)
T d1ihga1         108 PSN  110 (169)
T ss_dssp             TTC
T ss_pred             hhh
Confidence            764

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.0013  Score=51.98  Aligned_cols=79  Identities=9%  Similarity=-0.015  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH
Q 023865          167 TAQLMFELGQKAYGK---GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR  243 (276)
Q Consensus       167 ~ae~~yeaG~aALer---GdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRq  243 (276)
                      +.+..|+-|-.....   .+.+.+|.+|+.++...|...   -...+.|+.+|...|+.++|...|+.+.+.-|+-....
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~---rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR---RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence            366788888887755   455799999999998654332   26889999999999999999999999998888876554


Q ss_pred             HHHHH
Q 023865          244 QAADL  248 (276)
Q Consensus       244 QAKqL  248 (276)
                      ..+++
T Consensus       111 ~L~~~  115 (124)
T d2pqrb1         111 ALKSM  115 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.54  E-value=0.0028  Score=51.67  Aligned_cols=73  Identities=19%  Similarity=0.176  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHh-cCCHHHHHHHHHHHhhhCCC--CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          168 AQLMFELGQKAYG-KGMYGRAIEFLEGALTIIPR--PTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       168 ae~~yeaG~aALe-rGdY~qAIelLE~Al~~~~~--nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      +...+..|...+. .|+|..||+++++++...+.  +....+.+..-++.+|...|+.++|+.+|++++..+|...
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            4445555655545 49999999999999876553  3444577888899999999999999999999986665543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.47  E-value=0.018  Score=45.08  Aligned_cols=67  Identities=16%  Similarity=0.221  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPSKNI  241 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HPd~qV  241 (276)
                      ++..|..|..++.+|||.+|+++|+++++.   +   -..+++.|+..|..    ..+..+|+.+++... ..-++..
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~---g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~-~~~~~~a   72 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DLNYSNG   72 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccc-cccccch
Confidence            356889999999999999999999999873   1   13689999999987    568889999999887 4435443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.30  E-value=0.0053  Score=46.14  Aligned_cols=66  Identities=18%  Similarity=0.121  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC-------chHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF-------FGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~-------lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      +......|..-+..|+|..|++.++.++...+....       ....+.+-++.+|...|+.++|+..|++-.
T Consensus        55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            344567899999999999999999999986553222       234567789999999999999999999855

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.032  Score=49.61  Aligned_cols=80  Identities=15%  Similarity=0.132  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH-HhCCCHHHHHHH
Q 023865          167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE-SNHPSKNIRRQA  245 (276)
Q Consensus       167 ~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~-~~HPd~qVRqQA  245 (276)
                      -....+..|..+..+|+|..|+.++.+|+...|.+.    .+...|+..|...|+..+|+..|.+-. -.+|.+..+.+-
T Consensus       151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~----~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL  226 (497)
T d1ya0a1         151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG----QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL  226 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS----HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCch----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            345678889999999999999999999999776554    499999999999999999999887654 357777777776


Q ss_pred             HHHHH
Q 023865          246 ADLRY  250 (276)
Q Consensus       246 KqLLy  250 (276)
                      ..++.
T Consensus       227 ~~~~~  231 (497)
T d1ya0a1         227 QKALS  231 (497)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.013  Score=44.62  Aligned_cols=61  Identities=15%  Similarity=0.004  Sum_probs=31.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023865          173 ELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE  233 (276)
Q Consensus       173 eaG~aALerGdY~qAIelLE~Al~~~~--~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~  233 (276)
                      ..|...+..|+|..|+.+|+.++....  ...+.-..+.+.|+.+|...|+.++|+..+++-.
T Consensus       256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al  318 (366)
T d1hz4a_         256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL  318 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            345555555555555555555554333  2223334455555555555555555555555555

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0041  Score=52.12  Aligned_cols=68  Identities=9%  Similarity=-0.063  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +...+..|..-...|+|..||+.|.+++...|.+..    +...++.+|...|+.++|+..|++.+..+|+.
T Consensus       112 ~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~----a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n  179 (315)
T d2h6fa1         112 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYH----AWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN  179 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             hhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc
Confidence            667788899999999999999999999998877754    89999999999999999999999999888863

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.78  E-value=0.045  Score=44.24  Aligned_cols=73  Identities=8%  Similarity=-0.003  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCc---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF---GGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~l---GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      +...+..|...+..|+|..|++.+++++...+.....   -..+...++.+|...|+..+|+..++...+.+|...
T Consensus       158 ~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~  233 (290)
T d1qqea_         158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA  233 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred             hhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcc
Confidence            4557788999999999999999999999876654322   123456678889999999999999999886666543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.62  E-value=0.011  Score=44.69  Aligned_cols=60  Identities=22%  Similarity=0.199  Sum_probs=48.7

Q ss_pred             cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCCCHHHHHH
Q 023865          181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-----------HADCIALYKQLESNHPSKNIRRQ  244 (276)
Q Consensus       181 rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq-----------~EkAIALCQ~L~~~HPd~qVRqQ  244 (276)
                      .+.|.+||+.|++|+.+.|.+..    +.+.|+.+|...|+           .++|+..|++.++-.|+-.+-..
T Consensus        54 ~~~~~~Ai~~~~kAl~l~P~~~~----a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~  124 (145)
T d1zu2a1          54 KQMIQEAITKFEEALLIDPKKDE----AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK  124 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcchhhH----HHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHH
Confidence            35568999999999998776644    89999999987765           58999999999988988765443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0082  Score=44.88  Aligned_cols=61  Identities=8%  Similarity=-0.036  Sum_probs=48.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCHH
Q 023865          176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH---ADCIALYKQLESNHPSKN  240 (276)
Q Consensus       176 ~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~---EkAIALCQ~L~~~HPd~q  240 (276)
                      -..+..++|.+|.+.+++++...|.+.    ++++-++++|...++.   ++||.+|+++....|++.
T Consensus         7 n~~~~~~~l~~Ae~~Y~~aL~~~p~~~----~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~   70 (122)
T d1nzna_           7 NELVSVEDLLKFEKKFQSEKAAGSVSK----STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE   70 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCCH----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCch
Confidence            355678899999999999999666544    4999999999876555   569999999985566654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.048  Score=45.38  Aligned_cols=68  Identities=3%  Similarity=-0.034  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYGKG-MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALerG-dY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +..-+..|......| +|..|+.++++++...|.+.    ++...++.+|...|+.++||.+|.+.+..+|+.
T Consensus        77 ~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~----~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n  145 (315)
T d2h6fa1          77 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY----QVWHHRRVLVEWLRDPSQELEFIADILNQDAKN  145 (315)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhh----hHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc
Confidence            445566677766655 69999999999999766554    499999999999999999999999999777764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.25  E-value=0.016  Score=47.24  Aligned_cols=60  Identities=12%  Similarity=-0.048  Sum_probs=49.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023865          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       175 G~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      |......|+|..|+..|.+++...    +-...+.+.|+.+|...|+.++|+..|++++...|+
T Consensus       249 ~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~  308 (334)
T d1dcea1         249 VEKSTVLQSELESCKELQELEPEN----KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM  308 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhC----chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc
Confidence            445566789999999999988743    344579999999999999999999999999966663

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=93.98  E-value=0.074  Score=44.53  Aligned_cols=71  Identities=15%  Similarity=-0.019  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCc-------------------------------hHHHHHHHHHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF-------------------------------GGEIQIWLAMAY  216 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~l-------------------------------GGEAQmwLAtAY  216 (276)
                      +...+..|...+..|+|.+|++.|+.+++..|.....                               .-...+.++.++
T Consensus        30 ~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~  109 (264)
T d1zbpa1          30 ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLS  109 (264)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHH
Confidence            5567778888889999999999999988876644321                               114556667778


Q ss_pred             HHcCChHHHHHHHHHHHHhCCC
Q 023865          217 EANNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       217 qa~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      ...|+.++|+++|+++....|+
T Consensus       110 ~~~gd~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1         110 MVSQDYEQVSELALQIEELRQE  131 (264)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HhCCCHHHHHHHHHHHHhcCCC
Confidence            8888888888888888766654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.58  E-value=0.025  Score=42.58  Aligned_cols=55  Identities=9%  Similarity=-0.020  Sum_probs=45.0

Q ss_pred             cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH----------cCChHHHHHHHHHHHHhCCCH
Q 023865          181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----------NNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       181 rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa----------~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      .|.|.+|+..++++++..|.+..    +.+.+..+|..          .++.++||..|++.++-.|+.
T Consensus        10 ~~~fe~A~~~~e~al~~~P~~~~----~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~   74 (145)
T d1zu2a1          10 ILLFEQIRQDAENTYKSNPLDAD----NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK   74 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HccHHHHHHHHHHHHhhCCcchH----HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh
Confidence            35589999999999998877765    88888888864          455689999999998778864

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=93.12  E-value=0.1  Score=45.34  Aligned_cols=68  Identities=21%  Similarity=0.126  Sum_probs=53.5

Q ss_pred             HHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023865          177 KAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY  250 (276)
Q Consensus       177 aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy  250 (276)
                      .|+..|++..++.++...    +.......+.++|++.|++..|+.+.|..+|+.+. .+++ =--.-|...|.
T Consensus       294 ~al~~~~~~~~~~~~~~l----~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a-~~~~-fYG~LAa~~Lg  361 (450)
T d1qsaa1         294 MALGTGDRRGLNTWLARL----PMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM-QQRG-FYPMVAAQRIG  361 (450)
T ss_dssp             HHHHHTCHHHHHHHHHHS----CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSCS-HHHHHHHHHTT
T ss_pred             HHHHcCChHHHHHHHHhc----CcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh-cCCC-hHHHHHHHHcC
Confidence            478899999999888763    33444457899999999999999999999999999 5653 45555665555

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.37  E-value=0.086  Score=42.64  Aligned_cols=62  Identities=16%  Similarity=0.058  Sum_probs=49.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023865          176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN  240 (276)
Q Consensus       176 ~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q  240 (276)
                      ...+.++++..|+..++.++...+.+...   ....+..+|...|..++|+..|+.++..+|+..
T Consensus       117 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~---~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~  178 (334)
T d1dcea1         117 LSRLPEPNWARELELCARFLEADERNFHC---WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY  178 (334)
T ss_dssp             HHTCSSCCHHHHHHHHHHHHHHCTTCHHH---HHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH
T ss_pred             HHHhccccHHHHHHHHHHHHhhCchhhhh---hhhHHHHHHHhccccHHHHHHHHHHHHcCCCCH
Confidence            33455667999999999999987766552   345667899999999999999999998888643

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.73  E-value=0.22  Score=34.52  Aligned_cols=36  Identities=17%  Similarity=0.218  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF  203 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~  203 (276)
                      +...+..|...+..|+|.+||.++++++...|.+..
T Consensus        46 ~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~   81 (95)
T d1tjca_          46 VSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR   81 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHH
Confidence            456778899999999999999999999998776643

>d2ijqa1 a.246.2.1 (A:14-158) Hypothetical protein rrnAC1037 {Haloarcula marismortui [TaxId: 2238]}

class: All alpha proteins
fold: Hyaluronidase domain-like
superfamily: TTHA0068-like
family: TTHA0068-like
domain: Hypothetical protein rrnAC1037
species: Haloarcula marismortui [TaxId: 2238]

Probab=90.16  E-value=2.1  Score=33.90  Aligned_cols=88  Identities=13%  Similarity=0.074  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCC--chHHHHHHHHHH-H--HHcCChHHHHHHHHHHHH---hCC
Q 023865          166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMA-Y--EANNRHADCIALYKQLES---NHP  237 (276)
Q Consensus       166 e~ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~--lGGEAQmwLAtA-Y--qa~Gq~EkAIALCQ~L~~---~HP  237 (276)
                      ++....|..|+..|..|+|=.|=+.||.+....+.+++  ...|..|++|.| |  ...|+..-|..++.+-..   .+|
T Consensus        15 ~t~~~a~~~Gi~lfN~g~y~eaHE~lEe~W~~~~~~~~er~~~QGLIQ~Aaa~~hh~~~gN~~GA~~l~~~al~~L~~~~   94 (145)
T d2ijqa1          15 ETLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVP   94 (145)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSC
T ss_pred             chHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence            35667899999999999999999999999987766553  346777777776 6  489999999999876442   344


Q ss_pred             C-------HHHHHHHHHHHHhhc
Q 023865          238 S-------KNIRRQAADLRYILQ  253 (276)
Q Consensus       238 d-------~qVRqQAKqLLyILE  253 (276)
                      .       ..++.++.+++.-++
T Consensus        95 ~~~~Gidv~~l~~~~~~~~~d~~  117 (145)
T d2ijqa1          95 NDYYGVDLLDVRTTVTNALSDPS  117 (145)
T ss_dssp             TTGGGBCHHHHHHHHHHHHHCGG
T ss_pred             CccCCccHHHHHHHHHHHHhchh
Confidence            3       468889988886554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=88.98  E-value=0.99  Score=34.72  Aligned_cols=75  Identities=16%  Similarity=0.084  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCH
Q 023865          168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       168 ae~~yeaG~aALe----rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      ....|..|...+.    ..+|..|+.+|.+++..-   .   ..+++.|+..|..    ..+.++|+.++++-. ...+.
T Consensus       178 ~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~---~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa-~~g~~  250 (265)
T d1ouva_         178 SPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---N---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC-KLGAK  250 (265)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH-HHTCH
T ss_pred             cccccchhhhcccCcccccchhhhhhhHhhhhccc---C---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH-HCcCH
Confidence            5566788877666    679999999999998842   1   4699999999974    227889999999998 34333


Q ss_pred             HHHHHHHHHHHhhc
Q 023865          240 NIRRQAADLRYILQ  253 (276)
Q Consensus       240 qVRqQAKqLLyILE  253 (276)
                      .    |...|.-|+
T Consensus       251 ~----A~~~l~~l~  260 (265)
T d1ouva_         251 G----ACDILKQLK  260 (265)
T ss_dssp             H----HHHHHHTCC
T ss_pred             H----HHHHHHHHH
Confidence            3    666666553

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.30  E-value=0.66  Score=37.30  Aligned_cols=59  Identities=8%  Similarity=0.001  Sum_probs=29.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023865          176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP  237 (276)
Q Consensus       176 ~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP  237 (276)
                      .....+|++..|...|+.++...+.+..   .+.+.++..+...|..+.|+.+++...+.+|
T Consensus       107 ~~~~~~~~~~~a~~i~~~~l~~~~~~~~---~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~  165 (308)
T d2onda1         107 DYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEGIKSGRMIFKKAREDAR  165 (308)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            3334455555555555555554333322   2444445555555555555555555443444

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.16  E-value=0.38  Score=44.21  Aligned_cols=54  Identities=20%  Similarity=0.267  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHH
Q 023865          168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADC  225 (276)
Q Consensus       168 ae~~yeaG~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkA  225 (276)
                      +...++.+..+|.+|+|+-|++++.-++...|.+.    +|+-.+|.||...|.....
T Consensus       430 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~----~ar~l~a~~~~~l~~~~~~  483 (505)
T d2cfua2         430 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNR----AARELQADALEQLGYQAEN  483 (505)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHHHhCcC
Confidence            77899999999999999999999999998666554    5999999999998876653

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=86.66  E-value=2.1  Score=29.46  Aligned_cols=64  Identities=19%  Similarity=0.004  Sum_probs=48.3

Q ss_pred             HhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023865          179 YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY  250 (276)
Q Consensus       179 LerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy  250 (276)
                      |..=....+|..|..++...   ++   .++..-+.|.-..|. +.++.+...+. ++|++.||+.|-..|.
T Consensus        46 L~~~~~~~~~~~L~~~l~d~---~~---~VR~~a~~aL~~i~~-~~~~~~L~~ll-~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          46 IGNFQDERAVEPLIKLLEDD---SG---FVRSGAARSLEQIGG-ERVRAAMEKLA-ETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HGGGCSHHHHHHHHHHHHHC---CT---HHHHHHHHHHHHHCS-HHHHHHHHHHT-TSCCTHHHHHHHHHGG
T ss_pred             HHhcchhhhHHHHHhhhccc---hh---HHHHHHHHHHHHhCc-cchHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence            44444567899999888632   22   488888888888886 56777777887 7999999999988764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=85.57  E-value=4.1  Score=29.03  Aligned_cols=67  Identities=12%  Similarity=0.040  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCC
Q 023865          167 TAQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPS  238 (276)
Q Consensus       167 ~ae~~yeaG~aALe----rGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HPd  238 (276)
                      -....|..|..-+.    ..++.+|+.+|+.+++.-   .   ..+++.|+..|..    ..+.++|+.+|+.-. ...+
T Consensus        54 ~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa-~~G~  126 (133)
T d1klxa_          54 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---D---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC-RLGS  126 (133)
T ss_dssp             CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTC
T ss_pred             chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---c---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHH-HCCC
Confidence            34556677766554    568999999999998742   2   3689999998876    357889999999877 4545


Q ss_pred             HH
Q 023865          239 KN  240 (276)
Q Consensus       239 ~q  240 (276)
                      +.
T Consensus       127 ~~  128 (133)
T d1klxa_         127 ED  128 (133)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.71  E-value=3.9  Score=32.48  Aligned_cols=65  Identities=14%  Similarity=-0.052  Sum_probs=32.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023865          175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK  239 (276)
Q Consensus       175 G~aALerGdY~qAIelLE~Al~~~~~nS~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~  239 (276)
                      +..-...|++.+|..+|+.++...+.+......+....+.-....|+.+.+..+++...+.+|..
T Consensus       210 ~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         210 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence            33334556666666666666655443322222233333333455566666666666554445543