Citrus Sinensis ID: 023899

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
cHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccHHccccccEEEccccccccccccccHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccccccccccc
cHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccHHHHHcccc
MATQALVSSSLTSSVETARQILGarsaqsptgssrkgsfvvraastppvkqgadrplwfasKQSLsyldgslpgdygfdplglsdpegtggfiepkwlayGEVINGRYAMLgavgaiapeilgkaglipqeTALAWfqtgvippagtynywadpYTLFVLEMALMGFAehrrfqdwanpgsmgrqYFLGFEkylggsgdpaypggplfnplglgkdeksmkDFKLKEVKNGRLAMLAILGYFVQGLvtgvgpyqnlldhladpvnnnvltslkfh
matqalvsssltsSVETARQILgarsaqsptgssrkgsfvvraastppvkqgadrplWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
MATQalvsssltssvetaRQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYpggplfnplglgKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
*******************************************************PLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGL*********FKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVL******
**T**********************************************************KQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
***************ETARQILG****************VVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
*************************************************KQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKF*
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
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MATQALVSSSLTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query275 2.2.26 [Sep-21-2011]
P27522273 Chlorophyll a-b binding p N/A no 0.989 0.996 0.880 1e-135
Q32904275 Chlorophyll a-b binding p N/A no 0.992 0.992 0.862 1e-133
P10708270 Chlorophyll a-b binding p N/A no 0.789 0.803 0.415 3e-42
P13869270 Chlorophyll a-b binding p N/A no 0.92 0.937 0.402 4e-42
P27521251 Chlorophyll a-b binding p no no 0.803 0.880 0.42 3e-39
Q9SQL2252 Chlorophyll a-b binding p N/A no 0.778 0.849 0.412 3e-38
P20866269 Chlorophyll a-b binding p N/A no 0.861 0.881 0.389 1e-35
P12328264 Chlorophyll a-b binding p N/A no 0.861 0.897 0.386 2e-34
P08963264 Chlorophyll a-b binding p N/A no 0.872 0.909 0.376 3e-34
P12062265 Chlorophyll a-b binding p N/A no 0.876 0.909 0.387 4e-34
>sp|P27522|CB13_SOLLC Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1 Back     alignment and function desciption
 Score =  481 bits (1237), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/276 (88%), Positives = 255/276 (92%), Gaps = 4/276 (1%)

Query: 1   MATQALVSSSLTSS-VETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWF 59
           MATQAL+SSS  S+  E ARQI+G+R +QS T   RK SFVVRAASTPPVKQGA+R LWF
Sbjct: 1   MATQALISSSSISTSAEAARQIIGSRISQSVT---RKASFVVRAASTPPVKQGANRQLWF 57

Query: 60  ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
           ASKQSLSYLDG LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLGA GAIAP
Sbjct: 58  ASKQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAP 117

Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANP 179
           EILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA P
Sbjct: 118 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKP 177

Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
           GSMG+QYFLG EK LGGSGDPAYPGGPLFNPLG GKDEKSMK+ KLKE+KNGRLAMLAIL
Sbjct: 178 GSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAIL 237

Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
           GYF+Q LVTGVGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct: 238 GYFIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273
The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
Solanum lycopersicum (taxid: 4081)
>sp|Q32904|CB23_PEA Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1 Back     alignment and function description
>sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1 Back     alignment and function description
>sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1 Back     alignment and function description
>sp|P27521|CA4_ARATH Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=LHCA4 PE=1 SV=1 Back     alignment and function description
>sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1 Back     alignment and function description
>sp|P20866|CB2_PHYPA Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens subsp. patens PE=3 SV=1 Back     alignment and function description
>sp|P12328|CB21_LEMGI Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1 Back     alignment and function description
>sp|P08963|CB22_HORVU Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1 Back     alignment and function description
>sp|P12062|CB26_PETSP Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query275
356501755276 PREDICTED: chlorophyll a-b binding prote 1.0 0.996 0.880 1e-137
356554088276 PREDICTED: chlorophyll a-b binding prote 1.0 0.996 0.876 1e-136
255640167276 unknown [Glycine max] 1.0 0.996 0.876 1e-136
268612160276 Chain 3, Improved Model Of Plant Photosy 1.0 0.996 0.876 1e-136
255646873276 unknown [Glycine max] 1.0 0.996 0.869 1e-135
226872273 chlorophyll a/b binding protein 0.989 0.996 0.884 1e-134
115813273 RecName: Full=Chlorophyll a-b binding pr 0.989 0.996 0.880 1e-133
118489937274 unknown [Populus trichocarpa x Populus d 0.996 1.0 0.905 1e-133
388515199277 unknown [Medicago truncatula] 1.0 0.992 0.855 1e-133
224131950274 light-harvesting complex I protein Lhca3 0.996 1.0 0.901 1e-133
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
 Score =  492 bits (1266), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 243/276 (88%), Positives = 254/276 (92%), Gaps = 1/276 (0%)

Query: 1   MATQALVSSS-LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWF 59
           MA QALVSSS LT S E ARQ LG RS QSP G SRK SF+V+AA+TPPVKQG+DRPLWF
Sbjct: 1   MAAQALVSSSSLTFSAEAARQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWF 60

Query: 60  ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
           ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGE+INGRYAMLGAVGAIAP
Sbjct: 61  ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAP 120

Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANP 179
           EILGKAGLIPQETAL WF+TGV PPAGTYNYWAD YTLFV EMALMGFAEHRRFQDWA P
Sbjct: 121 EILGKAGLIPQETALPWFRTGVFPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKP 180

Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
           GSMG+QYFLG EK LGGSG+PAYPGGP FNPLG GKDEKS+KD KLKEVKNGRLAMLAIL
Sbjct: 181 GSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAIL 240

Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
           GYFVQ LVTGVGPYQNLLDHLADPV+NN+LTSLKFH
Sbjct: 241 GYFVQALVTGVGPYQNLLDHLADPVHNNILTSLKFH 276

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like isoform 1 [Glycine max] gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|255640167|gb|ACU20374.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I Back     alignment and taxonomy information
>gi|255646873|gb|ACU23907.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|226872|prf||1609235A chlorophyll a/b binding protein Back     alignment and taxonomy information
>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic; AltName: Full=LHCI type III CAB-8; Flags: Precursor gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|118489937|gb|ABK96765.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|388515199|gb|AFK45661.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224131950|ref|XP_002321218.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa] gi|118485656|gb|ABK94678.1| unknown [Populus trichocarpa] gi|222861991|gb|EEE99533.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query275
TAIR|locus:2200868273 LHCA3 "photosystem I light har 0.938 0.945 0.815 1.9e-113
TAIR|locus:2825741256 Lhca5 "photosystem I light har 0.741 0.796 0.382 1.3e-36
TAIR|locus:2082767257 LHCA2 "photosystem I light har 0.738 0.789 0.405 5.1e-35
TAIR|locus:2202150270 Lhca6 "photosystem I light har 0.745 0.759 0.401 4.6e-34
UNIPROTKB|P12330265 CAB1R "Chlorophyll a-b binding 0.727 0.754 0.392 4.4e-29
TAIR|locus:2019287267 CAB3 "chlorophyll A/B binding 0.698 0.719 0.403 9.1e-29
TAIR|locus:2019372267 CAB2 "chlorophyll A/B-binding 0.698 0.719 0.403 9.1e-29
TAIR|locus:2019322267 CAB1 "chlorophyll A/B binding 0.698 0.719 0.403 9.1e-29
TAIR|locus:2040944266 LHB1B1 "light-harvesting chlor 0.781 0.808 0.387 9.1e-29
TAIR|locus:2040934265 LHB1B2 "photosystem II light h 0.698 0.724 0.399 2.4e-28
TAIR|locus:2200868 LHCA3 "photosystem I light harvesting complex gene 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
 Identities = 212/260 (81%), Positives = 227/260 (87%)

Query:    16 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGD 75
             +TARQI G++   S   S +K SFVV+AA+TPPVKQGA+RPLWFAS QSLSYLDGSLPGD
Sbjct:    16 QTARQIFGSKPVAS--ASQKKSSFVVKAAATPPVKQGANRPLWFASSQSLSYLDGSLPGD 73

Query:    76 YGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALA 135
             YGFDPLGLSDPEGTGGFIEP+WLAYGE+INGR+AMLGA GAIAPEILGKAGLIP ETAL 
Sbjct:    74 YGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALP 133

Query:   136 WFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLG 195
             WFQTGVIPPAGTY YWAD YTLFVLEMALMGFAEHRR QDW NPGSMG+QYFLG EK L 
Sbjct:   134 WFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLA 193

Query:   196 GSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQN 255
             GSG+PAY            KDEKS+K+ KLKEVKNGRLAMLAILGYF+QGLVTGVGPYQN
Sbjct:   194 GSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQN 253

Query:   256 LLDHLADPVNNNVLTSLKFH 275
             LLDHLADPVNNNVLTSLKFH
Sbjct:   254 LLDHLADPVNNNVLTSLKFH 273
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009765 "photosynthesis, light harvesting" evidence=IEA
GO:0015979 "photosynthesis" evidence=ISS
GO:0016020 "membrane" evidence=IEA;IDA
GO:0016168 "chlorophyll binding" evidence=ISS
GO:0030076 "light-harvesting complex" evidence=ISS
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0010287 "plastoglobule" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
TAIR|locus:2825741 Lhca5 "photosystem I light harvesting complex gene 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082767 LHCA2 "photosystem I light harvesting complex gene 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202150 Lhca6 "photosystem I light harvesting complex gene 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P12330 CAB1R "Chlorophyll a-b binding protein 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2019287 CAB3 "chlorophyll A/B binding protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019372 CAB2 "chlorophyll A/B-binding protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019322 CAB1 "chlorophyll A/B binding protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040944 LHB1B1 "light-harvesting chlorophyll-protein complex II subunit B1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040934 LHB1B2 "photosystem II light harvesting complex gene B1B2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q32904CB23_PEANo assigned EC number0.86280.99270.9927N/Ano
P27522CB13_SOLLCNo assigned EC number0.88040.98900.9963N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query275
PLN00048262 PLN00048, PLN00048, photosystem I light harvesting 1e-172
PLN00147252 PLN00147, PLN00147, light-harvesting complex I chl 3e-64
PLN00097244 PLN00097, PLN00097, photosystem I light harvesting 6e-57
PLN00098267 PLN00098, PLN00098, light-harvesting complex I chl 3e-56
PLN00101250 PLN00101, PLN00101, Photosystem I light-harvesting 7e-53
PLN00025262 PLN00025, PLN00025, photosystem II light harvestin 2e-48
PLN00171324 PLN00171, PLN00171, photosystem light-harvesting c 6e-43
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 8e-43
PLN00187286 PLN00187, PLN00187, photosystem II light-harvestin 2e-35
PLN00100246 PLN00100, PLN00100, light-harvesting complex chlor 2e-32
PLN00099243 PLN00099, PLN00099, light-harvesting complex IChlo 1e-30
PLN00170255 PLN00170, PLN00170, photosystem II light-harvestin 4e-25
PLN00089209 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c bi 6e-08
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 4e-07
PLN00170 255 PLN00170, PLN00170, photosystem II light-harvestin 2e-04
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 3e-04
PLN00120202 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c bi 7e-04
>gnl|CDD|177680 PLN00048, PLN00048, photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information 
 Score =  476 bits (1227), Expect = e-172
 Identities = 219/264 (82%), Positives = 240/264 (90%), Gaps = 2/264 (0%)

Query: 12  TSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGS 71
           TS V+TAR+ L + +A+S   S++K  FVVRA +TPP KQGADR LWFASKQSLSYLDG+
Sbjct: 1   TSGVQTARRALSSSAARSS--SAKKARFVVRAEATPPAKQGADRQLWFASKQSLSYLDGT 58

Query: 72  LPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQE 131
           LPGD+GFDPLGLSDPEG GGFIEP+WLAYGEVINGR+AMLGA GAIAPEILGKAGLIPQE
Sbjct: 59  LPGDFGFDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQE 118

Query: 132 TALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFE 191
           TAL WFQ+GVIPPAGTY+YWADPYTLFVLEMALMGFAEHRR QD+  PGSMG+QYFLG E
Sbjct: 119 TALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLE 178

Query: 192 KYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVG 251
           K LGGSG+PAYPGGP FNPLG GKDEKSMK+ KLKEVKNGRLAMLAILGYF+Q LVTGVG
Sbjct: 179 KGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVG 238

Query: 252 PYQNLLDHLADPVNNNVLTSLKFH 275
           P+QNLLDHLADPVNNNVLT+LKFH
Sbjct: 239 PFQNLLDHLADPVNNNVLTNLKFH 262

Length = 262
>gnl|CDD|215076 PLN00147, PLN00147, light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>gnl|CDD|165670 PLN00097, PLN00097, photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>gnl|CDD|177716 PLN00098, PLN00098, light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>gnl|CDD|215055 PLN00101, PLN00101, Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>gnl|CDD|215033 PLN00025, PLN00025, photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>gnl|CDD|215088 PLN00171, PLN00171, photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|177781 PLN00187, PLN00187, photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>gnl|CDD|215054 PLN00100, PLN00100, light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>gnl|CDD|177717 PLN00099, PLN00099, light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>gnl|CDD|215087 PLN00170, PLN00170, photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>gnl|CDD|177710 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|215087 PLN00170, PLN00170, photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|215063 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 275
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 100.0
PLN00097244 photosystem I light harvesting complex Lhca2/4, ch 100.0
PLN00098267 light-harvesting complex I chlorophyll a/b-binding 100.0
PLN00101250 Photosystem I light-harvesting complex type 4 prot 100.0
PLN00187286 photosystem II light-harvesting complex II protein 100.0
PLN00147252 light-harvesting complex I chlorophyll-a/b binding 100.0
PLN00025262 photosystem II light harvesting chlorophyll a/b bi 100.0
PLN00171324 photosystem light-harvesting complex -chlorophyll 100.0
PLN00099243 light-harvesting complex IChlorophyll A-B binding 100.0
PLN00100246 light-harvesting complex chlorophyll-a/b protein o 100.0
PLN00170255 photosystem II light-harvesting-Chl-binding protei 100.0
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 100.0
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 100.0
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 100.0
PLN00098 267 light-harvesting complex I chlorophyll a/b-binding 99.62
PLN00101 250 Photosystem I light-harvesting complex type 4 prot 99.59
PLN00170 255 photosystem II light-harvesting-Chl-binding protei 99.58
PLN00147 252 light-harvesting complex I chlorophyll-a/b binding 99.54
PLN00171 324 photosystem light-harvesting complex -chlorophyll 99.49
PLN00097 244 photosystem I light harvesting complex Lhca2/4, ch 99.49
PLN00025 262 photosystem II light harvesting chlorophyll a/b bi 99.47
PLN00100 246 light-harvesting complex chlorophyll-a/b protein o 99.46
PLN00099 243 light-harvesting complex IChlorophyll A-B binding 99.41
PLN00048 262 photosystem I light harvesting chlorophyll a/b bin 99.41
PLN00187 286 photosystem II light-harvesting complex II protein 99.4
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 99.34
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 99.32
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 99.01
PLN00084214 photosystem II subunit S (PsbS); Provisional 98.02
PHA0233735 putative high light inducible protein 98.02
PLN00014250 light-harvesting-like protein 3; Provisional 97.46
PHA0233735 putative high light inducible protein 97.37
PLN00014250 light-harvesting-like protein 3; Provisional 96.02
PLN00084214 photosystem II subunit S (PsbS); Provisional 94.23
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.7e-74  Score=524.15  Aligned_cols=243  Identities=86%  Similarity=1.465  Sum_probs=225.9

Q ss_pred             cCccccceeeecCCCCcccCCCCCccccCcccccccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccceeeeh
Q 023899           33 SSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLG  112 (275)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~~l~G~~pGd~GfDPlGl~~~~~~~~~~~~~~~r~aElkHGR~AMLA  112 (275)
                      ++++++|++|+++.++++++++|++|+++.++|+||||++|||||||||||+|++..+++.+.+|+|++||+||||||||
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~r~~w~p~~~~P~yLdG~lPGD~GFDPlGL~~p~~~~~~~~~~~~r~aEL~hGR~AMLa   99 (262)
T PLN00048         20 SAKKARFVVRAEATPPAKQGADRQLWFASKQSLSYLDGTLPGDFGFDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLG   99 (262)
T ss_pred             cccccceeEecccCCCCCCCCCCceecCCCCCccccCCCCCCccCCCccccCCccccccchhHHHHHHHHhhcchHHHHH
Confidence            44566899999988888889999999999999999999999999999999998876666678899999999999999999


Q ss_pred             hhhhhhhhhhccCCCCCccchhhhhccCccCCCCccccccchhHHHHHHHHHHHHHhhhhhccccCCCCCCccccccccc
Q 023899          113 AVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK  192 (275)
Q Consensus       113 ~~G~~~~e~l~~~g~~~~~~~~~w~~ag~vp~~g~~~~~~~~~~l~~~~~~~~G~~E~~r~~~~~~pG~~g~~~~~g~~~  192 (275)
                      ++||++||++++.|+++..+...|+++|++++.+.++||.++.+++++|+++||++|.+|++++++||+++.+.+.++++
T Consensus       100 ~~G~lv~Ell~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~  179 (262)
T PLN00048        100 AAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEK  179 (262)
T ss_pred             HhhHHHHHHhccCCccccccccccccccccccccccccccchhHHHHHHHHHhhheeeeccccccCCCcccccccccchh
Confidence            99999999999888887655567999999988888899999999999999999999999999999999999988888888


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcccccchhhHHhhhcCCccchhhccc
Q 023899          193 YLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL  272 (275)
Q Consensus       193 ~~~g~~d~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP~~nL~~hl~dP~~~n~~~~~  272 (275)
                      .+.+++|+.||||++||||||.+|+|+++++|++|||||||||+|++||++|+++||++|++||.+||+||+||||++|+
T Consensus       180 ~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~~~~  259 (262)
T PLN00048        180 GLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNL  259 (262)
T ss_pred             ccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCcccccccccc
Confidence            88877788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q 023899          273 KFH  275 (275)
Q Consensus       273 ~~~  275 (275)
                      +.|
T Consensus       260 ~~~  262 (262)
T PLN00048        260 KFH  262 (262)
T ss_pred             ccC
Confidence            765

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query275
2wsc_3276 Improved Model Of Plant Photosystem I Length = 276 1e-126
3lw5_3172 Improved Model Of Plant Photosystem I Length = 172 9e-80
2o01_3165 The Structure Of A Plant Photosystem I Supercomplex 2e-73
2wsc_2269 Improved Model Of Plant Photosystem I Length = 269 3e-35
2wsc_4251 Improved Model Of Plant Photosystem I Length = 251 2e-32
2o01_2186 The Structure Of A Plant Photosystem I Supercomplex 7e-31
2bhw_A232 Pea Light-Harvesting Complex Ii At 2.5 Angstrom Res 3e-28
1vcr_A232 An Icosahedral Assembly Of Light-Harvesting Chlorop 4e-28
1rwt_A232 Crystal Structure Of Spinach Major Light-harvesting 9e-28
2o01_4165 The Structure Of A Plant Photosystem I Supercomplex 8e-25
2wsc_1241 Improved Model Of Plant Photosystem I Length = 241 5e-24
2o01_1187 The Structure Of A Plant Photosystem I Supercomplex 3e-23
3lw5_2176 Improved Model Of Plant Photosystem I Length = 176 8e-23
3lw5_4166 Improved Model Of Plant Photosystem I Length = 166 2e-22
3lw5_1170 Improved Model Of Plant Photosystem I Length = 170 4e-19
3pl9_A243 Crystal Structure Of Spinach Minor Light-Harvesting 5e-19
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I Length = 276 Back     alignment and structure 
Iteration: 1

 Score =  447 bits (1149), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 220/260 (84%), Positives = 231/260 (88%)
Query: 16  ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGD 75
           E ARQ LG RS QSP G SRK SF+V+AA+TPPVKQG+DRPLWFASKQSLSYLDGSLPGD
Sbjct: 17  EAARQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWFASKQSLSYLDGSLPGD 76
Query: 76  YGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALA 135
           YGFDPLGLSDPEGTGGFIEPKWLAYGE+INGRYAMLGAVGAIAPEILGKAGLIPQETAL 
Sbjct: 77  YGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALP 136
Query: 136 WFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLG 195
           WF+TG IPPAGTYNYWAD YTLFV EMALMGFAEHRRFQDWA PGSMG+QYFLG EK LG
Sbjct: 137 WFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLG 196
Query: 196 GSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQN 255
           GSG+PAY            KDEKS+KD KLKEVKNGRLAMLAILGYFVQ LVTGVGPYQN
Sbjct: 197 GSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQN 256
Query: 256 LLDHLADPVNNNVLTSLKFH 275
           LLDHL DPV+NN+LTSLKFH
Sbjct: 257 LLDHLTDPVHNNILTSLKFH 276
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I Length = 172 Back     alignment and structure
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I Length = 269 Back     alignment and structure
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I Length = 251 Back     alignment and structure
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 186 Back     alignment and structure
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB Protein Complex From Pea Thylakoid Membranes Length = 232 Back     alignment and structure
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting Complex At 2.72 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I Length = 241 Back     alignment and structure
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 187 Back     alignment and structure
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I Length = 176 Back     alignment and structure
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I Length = 166 Back     alignment and structure
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I Length = 170 Back     alignment and structure
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting Complex Cp29 At 2.80 Angstrom Resolution Length = 243 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query275
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 5e-87
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 3e-56
2wsc_2 269 LHCA2, type II chlorophyll A/B binding protein fro 8e-05
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 3e-54
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 5e-54
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 1e-48
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 6e-45
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Length = 276 Back     alignment and structure
 Score =  260 bits (663), Expect = 5e-87
 Identities = 242/276 (87%), Positives = 253/276 (91%), Gaps = 1/276 (0%)

Query: 1   MATQALVSSS-LTSSVETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWF 59
           MA QALVSSS LT S E ARQ LG RS QSP G SRK SF+V+AA+TPPVKQG+DRPLWF
Sbjct: 1   MAAQALVSSSSLTFSAEAARQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWF 60

Query: 60  ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAP 119
           ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGE+INGRYAMLGAVGAIAP
Sbjct: 61  ASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAP 120

Query: 120 EILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANP 179
           EILGKAGLIPQETAL WF+TG IPPAGTYNYWAD YTLFV EMALMGFAEHRRFQDWA P
Sbjct: 121 EILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKP 180

Query: 180 GSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL 239
           GSMG+QYFLG EK LGGSG+PAYPGGP FNPLG GKDEKS+KD KLKEVKNGRLAMLAIL
Sbjct: 181 GSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAIL 240

Query: 240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH 275
           GYFVQ LVTGVGPYQNLLDHL DPV+NN+LTSLKFH
Sbjct: 241 GYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKFH 276
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269 Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269 Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Length = 251 Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232 Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Length = 241 Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Length = 243 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query275
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 100.0
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 100.0
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 100.0
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 100.0
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 100.0
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 100.0
2wsc_4 251 Chlorophyll A-B binding protein P4, chloroplastic; 99.48
2bhw_A 232 Chlorophyll A-B binding protein AB80; LHC-II, phot 99.45
2wsc_2 269 LHCA2, type II chlorophyll A/B binding protein fro 99.44
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 99.37
2wsc_1 241 AT3G54890, LHCA1; photosynthesis, electron transfe 99.34
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 99.24
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
Probab=100.00  E-value=2.8e-73  Score=522.59  Aligned_cols=275  Identities=87%  Similarity=1.419  Sum_probs=148.4

Q ss_pred             Chhhhhhhccccch-hHHHHHHhhccccCCCCCcCccccceeeecCCCCcccCCCCCccccCcccccccCCCCCCCCCCC
Q 023899            1 MATQALVSSSLTSS-VETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFD   79 (275)
Q Consensus         1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~p~~l~G~~pGd~GfD   79 (275)
                      ||+.+++++++.+. ..+.++++|.|.+..++..+.+.+|+||+++.++++++++|++|+|+.++|+||||++|||||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~R~~wlP~~~~P~~L~G~~pGD~GfD   80 (276)
T 2wsc_3            1 MAAQALVSSSSLTFSAEAARQSLGPRSLQSPFGFSRKASFLVKAAATPPVKQGSDRPLWFASKQSLSYLDGSLPGDYGFD   80 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcccchhhhccccchhhhhhhccCccccccccccccccceeEecccCCccccCCCccccCCCCCCcccccCcCCCccCCC
Confidence            56555555443333 34455577877776666555667899999988878899999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcccchhhhhhhhccceeeehhhhhhhhhhhccCCCCCccchhhhhccCccCCCCccccccchhHHHH
Q 023899           80 PLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFV  159 (275)
Q Consensus        80 PlGl~~~~~~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~l~~~g~~~~~~~~~w~~ag~vp~~g~~~~~~~~~~l~~  159 (275)
                      ||||+|+++.+++++++|+|++|||||||||||++|++++|+++..|+++.+....|++.++||++|..|||.++.++++
T Consensus        81 PlGl~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~~~~~p~~w~~~g~ip~aG~~~~~~~~~~l~~  160 (276)
T 2wsc_3           81 PLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNYWADSYTLFV  160 (276)
T ss_dssp             ----CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCCCCSSCCSSSSCCCC-----CCCSCCCCSTTH
T ss_pred             ccccCChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccccccccCcchhhhhhcccchhHHHHhccchHHHH
Confidence            99999988777777889999999999999999999999999999889887555556999999999999999999988899


Q ss_pred             HHHHHHHHHhhhhhccccCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHh
Q 023899          160 LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAIL  239 (275)
Q Consensus       160 ~~~~~~G~~E~~r~~~~~~pG~~g~~~~~g~~~~~~g~~d~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~  239 (275)
                      +|+++||++|.+|++++.+||+++.++++++++...+..|+.||||++||||||.+|+++++++|++||||||||||||+
T Consensus       161 ~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~  240 (276)
T 2wsc_3          161 FEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAIL  240 (276)
T ss_dssp             HHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCCSSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcccccCCcccccccccccccccccccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHH
Confidence            99999999999999999999999988888776665556688999999999999998888899999999999999999999


Q ss_pred             HHhhhhhcccccchhhHHhhhcCCccchhhccccCC
Q 023899          240 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLKFH  275 (275)
Q Consensus       240 G~~~Q~~vTG~gP~~nL~~hl~dP~~~n~~~~~~~~  275 (275)
                      |+++|+++||++|++||.+||+||+||||++++.+|
T Consensus       241 g~~~~~~~tg~g~~~~l~~HladP~~~n~~~~~~~~  276 (276)
T 2wsc_3          241 GYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKFH  276 (276)
T ss_dssp             HHHSSCCCCSSCCSCC--------------------
T ss_pred             HHHHHHHhcCCChHHHHHHhccCcccchhhhhccCC
Confidence            999999999999999999999999999999999875
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 275
d1rwta_218 f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi 1e-55
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  176 bits (447), Expect = 1e-55
 Identities = 88/229 (38%), Positives = 116/229 (50%), Gaps = 33/229 (14%)

Query: 52  GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYA 109
           G DR  +    S +S SYL G  PGDYG+D  GLS    T            EVI+ R+A
Sbjct: 5   GPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETF-----AKNRELEVIHCRWA 59

Query: 110 MLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADP--------YTLFVLE 161
           MLGA+G + PE+L + G+   E       +  I   G  +Y  +P          ++  +
Sbjct: 60  MLGALGCVFPELLARNGVKFGEAVWFKAGS-QIFSEGGLDYLGNPSLVHAQSILAIWACQ 118

Query: 162 MALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGPLFNPLGLGKDEKSMK 221
           + LMG  E  R                     LG   DP YPGG  F+PLGL  D ++  
Sbjct: 119 VILMGAVEGYRIA----------------GGPLGEVVDPLYPGGS-FDPLGLADDPEAFA 161

Query: 222 DFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLT 270
           + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN   
Sbjct: 162 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWN 210

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query275
d1rwta_218 Chlorophyll a-b binding protein {Spinach (Spinacia 100.0
d1rwta_ 218 Chlorophyll a-b binding protein {Spinach (Spinacia 99.52
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=1.7e-60  Score=423.09  Aligned_cols=201  Identities=44%  Similarity=0.746  Sum_probs=161.7

Q ss_pred             cccCCCCCcccc--CcccccccCCCCCCCCCCCCCCCCCCCCCCCCcccchhhhhhhhccceeeehhhhhhhhhhhccCC
Q 023899           49 VKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAG  126 (275)
Q Consensus        49 ~~~~~~r~~~~~--~~~~p~~l~G~~pGd~GfDPlGl~~~~~~~~~~~~~~~r~aElkHGR~AMLA~~G~~~~e~l~~~g  126 (275)
                      .|++++|++|++  +.+.|+||||++|||||||||||++..+     +++|+||+|||||||||||++|++++|++++.+
T Consensus         2 ~~~~~~r~~~~~~~~~~~P~~LdGs~pGD~GFDPLgls~d~~-----~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~~   76 (218)
T d1rwta_           2 PWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE-----TFAKNRELEVIHCRWAMLGALGCVFPELLARNG   76 (218)
T ss_dssp             TTSSTTCCCTTGGGGCSCCTTCCSCSTTCCSCCTTCTTCSHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCCCCcccCCccccCCCcccCCCCCCCCCcCCcccCCCHH-----HHHHHHHHHHhhceehHhhhcceeehhhhccCC
Confidence            489999999997  5678999999999999999999974321     789999999999999999999999999988776


Q ss_pred             CCCccchhhhhccCc-cCCCCcccccc--------chhHHHHHHHHHHHHHhhhhhccccCCCCCCcccccccccccCCC
Q 023899          127 LIPQETALAWFQTGV-IPPAGTYNYWA--------DPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGS  197 (275)
Q Consensus       127 ~~~~~~~~~w~~ag~-vp~~g~~~~~~--------~~~~l~~~~~~~~G~~E~~r~~~~~~pG~~g~~~~~g~~~~~~g~  197 (275)
                      .....  ..|++++. ++..+..+++.        ....++++++.+++.+|..|.....                ..+.
T Consensus        77 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~----------------~~~~  138 (218)
T d1rwta_          77 VKFGE--AVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGP----------------LGEV  138 (218)
T ss_dssp             CCCSC--CSHHHHGGGGGSTTCBCGGGCTTSCCBCCHHHHHHHHHHHHHHHHHHHHHCBT----------------TBCC
T ss_pred             CCCCC--cccccccccccCcchhhhhcCchHHHHHHHHHHHHHHHHHHhhhhhhcccCCC----------------cccc
Confidence            54332  24554332 22233333332        2334566778889999988764311                1112


Q ss_pred             CCCCCCCCCCCCCCCCCcchhhhhhhhhhhhcchhhHHHHHhHHhhhhhcccccchhhHHhhhcCCccchhhcccc
Q 023899          198 GDPAYPGGPLFNPLGLGKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSLK  273 (275)
Q Consensus       198 ~d~~yPG~~~FDPLgl~~d~e~~~~~k~kEIkNGRLAMlAi~G~~~Q~~vTG~gP~~nL~~hl~dP~~~n~~~~~~  273 (275)
                      .|+.|||+ +|||+++.+++|+++++|+|||||||||||||+||++|+++||++|++||.+|++||+||||+++++
T Consensus       139 ~~~~~~~g-~fdPlg~~~~~e~~~~~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h~~~P~~~n~~~~~~  213 (218)
T d1rwta_         139 VDPLYPGG-SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFAT  213 (218)
T ss_dssp             SSSSCCCG-GGCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHCTTTSSGGGGTT
T ss_pred             cCCCCCCC-CccccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHHhcCchhhhHHHHHh
Confidence            45678887 6999999999999999999999999999999999999999999999999999999999999997664
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure