Citrus Sinensis ID: 024005

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
MSFVFRGSRADLETGFPGFIPERRTVRIHAGRPVNSNSLAFLVTVLLLFMILNSHQMSSNFLLWIVLGIFLLATSLRMYATCQQLHAQAQAHAVASGLLGHTELRLQMPPAIAFASRGRLQGLRLQLALLDREFDELDYETLRALDADNVPTAASMSEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETRQVEMDASYMV
Secondary Structure (PSIPRED)
ccEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHccccHHHHHHHHHHccccccHHHHHHHHcccccccccccccHHHHHccccEEccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccEEEEcccccccccccHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccHccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHcccccccccccccHHHHHHcccEEEEEEcccccccccccccHHHHHHccccccccccccccccccccEEEEEEccccccEEEEccccccEcHHHccHHHHHcccccccHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
msfvfrgsradletgfpgfiperrtvrihagrpvnsnSLAFLVTVLLLFMILNSHQMSSNFLLWIVLGIFLLATSLRMYATCQQLHAQAQAHAVASGLLGhtelrlqmppaiafASRGRLQGLRLQLALLDREFDELDYETLRaldadnvptaasmseeeintlpvhkykvsgsqsgassmqlgsssspaeqKKLETSIsvgnlktedeltCTVCleqvnvgeivrslpclhqfhancidpwlrqqgtcpvcklragsgwhetrqvemdasymv
Flexible Loop (DISEMBL)
msfvfrgsradletgfpgfipeRRTVRihagrpvnsNSLAFLVTVLLLFMILNSHQMSSNFLLWIVLGIFLLATSLRMYATCQQLHAQAQAHAVASGLLGHTELRLQMPPAIAFASRGRLQGLRLQLALLDREFDELDYETLRALDADNVPTAASMSEEEINTLPVHKYKVSGSQSGASSMQlgsssspaeqKKLETSIsvgnlktedelTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLragsgwhetrqvemdasymv
Low Complexity Region (SEG)
MSFVFRGSRADLETGFPGFIPERRTVRIHAGRPVNSNSLAFLVTVLLLFMILNSHQMSSNFLLWIVLGIFLLATSLRMYATCqqlhaqaqahaVASGLLGHTELRLQMPPAIAFASrgrlqglrlqlallDREFDELDYETLRALDADNVPTAASMSEEEINTLPVHKYKVsgsqsgassmqlgssssPAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETRQVEMDASYMV
Disordered region (IsUnstruct)
***********LETGFPGFIPERRTVRIHAGRPVNSNSLAFLVTVLLLFMILNSHQMSSNFLLWIVLGIFLLATSLRMYATCQQLHAQAQAHAVASGLLGHTELRLQMPPAIAFASRGRLQGLRLQLALLDREFDELDYETLRALD*********************************************************LKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWH*************
Disordered Region (DISOPRED)
*SFVFR*SRADLETGFPGFIPERRTVRIHAGRPVNSNSLAFLVTVLLLFMILNSHQMSSNFLLWIVLGIFLLATSLRMYAT****************************************GLRLQLALLDREFDELDYET*********************TLPV****************************************EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVC**********************
Disordered Region (DISEMBL)
MSFVFRGSRADLETGFPGFIPERRTVRIHAGRPVNSNSLAFLVTVLLLFMILNSHQMSSNFLLWIVLGIFLLATSLRMYATCQQLHAQAQAHAVASGLLGHTELRLQMPPAIAFASRGRLQGLRLQLALLDREFDELDYETLRALDADNVPTAASMSEEEINTLPVHKYK**************************TSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETRQVEMDASYMV
Disordered Region (DISPRO)
*SFVFRGSRADLETGFPGFIPERRTVRIHAGRPVNSNSLAFLVTVLLLFMILNSHQMSSNFLLWIVLGIFLLATSLRMYATCQQLHAQAQAHAVASGLLGHTELRLQMPPAIAFASRGRLQGLRLQLALLDREFDELDYETLRALDADNVP*AASMSEEEINTLPVHKYKVSGS*******************************TEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWH*************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFVFRGSRADLETGFPGFIPERRTVRIHAGRPVNSNSLAFLVTVLLLFMILNSHQMSSNFLLWIVLGIFLLATSLRMYATCQQLHAQAQAHAVASGLLGHTELRLQMPPAIAFASRGRLQGLRLQLALLDREFDELDYETLRALDADNVPTAASMSEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETRQVEMDASYMV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	274	2.2.26 [Sep-21-2011]
Q9M2S6	273	E3 ubiquitin-protein liga	yes	no	0.989	0.992	0.713	1e-107
Q8VEM1	419	E3 ubiquitin-protein liga	yes	no	0.266	0.174	0.391	9e-12
Q6Y290	419	E3 ubiquitin-protein liga	yes	no	0.266	0.174	0.391	9e-12
Q86XS8	419	E3 ubiquitin-protein liga	yes	no	0.266	0.174	0.391	1e-11
Q8NC42	400	E3 ubiquitin-protein liga	no	no	0.324	0.222	0.414	3e-11
Q7T0Q3	312	RING finger protein 126-A	N/A	no	0.251	0.221	0.436	5e-11
Q5DTZ6	437	RING finger protein 150 O	no	no	0.266	0.167	0.405	5e-11
Q9ULK6	438	RING finger protein 150 O	no	no	0.266	0.166	0.405	5e-11
Q6DIP3	311	RING finger protein 126 O	no	no	0.251	0.221	0.436	8e-11
Q06003	461	Protein goliath OS=Drosop	no	no	0.281	0.167	0.362	1e-10

>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1

 Score =  389 bits (999), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/276 (71%), Positives = 221/276 (80%), Gaps = 5/276 (1%)

Query: 1   MSFVFRGSRADLETGFPG-FIPERRTVRIHAGRPVNSNSLAFLVTVLLLFMILNSHQMSS 59
           MSFVFRGSR DLE+GF G F+PERR +R+H  RPVNSNSLAFLVTVLLLFMILNSHQM  
Sbjct: 1   MSFVFRGSRGDLESGFSGGFLPERRAMRVHGARPVNSNSLAFLVTVLLLFMILNSHQMPP 60

Query: 60  NFLLWIVLGIFLLATSLRMYATC-QQLHAQAQAHAVASGLLGHTELRLQMPPAIAFASRG 118
           NFLLW+VLG+FL+AT+LRMYATC Q         A ASGL  HTELRL +PP+IA A+RG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAHAQAQAAAASGLFSHTELRLHVPPSIALATRG 120

Query: 119 RLQGLRLQLALLDREFDELDYETLRALDADNVPTAASMSEEEINTLPVHKYKVSGSQSGA 178
           RLQGLRLQLALLDREFD+LDYETLRALD+DNV T  SMSEEEIN LPVHKYKV   ++G 
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVST-TSMSEEEINALPVHKYKVLDPENGC 179

Query: 179 SSMQLGSSSSPAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANC 238
           S  +  S+SS AE  K+  S +     TEDELTC+VCLEQV VGEIVR+LPCLHQFHA C
Sbjct: 180 SLAKQASTSSSAE--KMLDSANESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAGC 237

Query: 239 IDPWLRQQGTCPVCKLRAGSGWHETRQVEMDASYMV 274
           IDPWLRQQGTCPVCK RA SGW E  +++ DAS MV
Sbjct: 238 IDPWLRQQGTCPVCKFRAHSGWQEQDEIDDDASDMV 273

E3 ubiquitin-protein ligase that acts as a positive regulator of abscisic acid-related stress signal transduction.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 182 QLGSSSSPAEQKKLETSISVGNLKTEDELT-CTVCLEQVNVGEIVRSLPCLHQFHANCID 240
           +LG ++  A  K    ++  G+ +T+ +   C VC+E     ++VR LPC H FH +C+D
Sbjct: 233 RLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVD 292

Query: 241 PWLRQQGTCPVCKL 254
           PWL +  TCP+CKL
Sbjct: 293 PWLSEHCTCPMCKL 306

Acts as an E3 ubiquitin-protein ligase (By similarity). May have a role during the programmed cell death of hematopoietic cells.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 182 QLGSSSSPAEQKKLETSISVGNLKTEDELT-CTVCLEQVNVGEIVRSLPCLHQFHANCID 240
           +LG ++  A  K    ++  G+ +T+ +   C VC+E     ++VR LPC H FH +C+D
Sbjct: 233 RLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVD 292

Query: 241 PWLRQQGTCPVCKL 254
           PWL +  TCP+CKL
Sbjct: 293 PWLSEHCTCPMCKL 306

Acts as an E3 ubiquitin-protein ligase (By similarity). May have a role during the programmed cell death of hematopoietic cells.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 182 QLGSSSSPAEQKKLETSISVGNLKTEDELT-CTVCLEQVNVGEIVRSLPCLHQFHANCID 240
           +LG ++  A  K    ++  G+ +T+ +   C VC+E     ++VR LPC H FH +C+D
Sbjct: 233 RLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRILPCKHVFHKSCVD 292

Query: 241 PWLRQQGTCPVCKL 254
           PWL +  TCP+CKL
Sbjct: 293 PWLSEHCTCPMCKL 306

May have a role during the programmed cell death of hematopoietic cells (By similarity). Acts as an E3 ubiquitin-protein ligase.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8NC42|RN149_HUMAN E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens GN=RNF149 PE=2 SV=2

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 51/99 (51%), Gaps = 10/99 (10%)

Query: 182 QLGSSSSPAEQKKLETSISVGNLK------TEDELTCTVCLEQVNVGEIVRSLPCLHQFH 235
           Q+GS S   E KK+   + +  +K        D   C VC+E   V +I+R LPC H FH
Sbjct: 233 QIGSQSHRKETKKVIGQLLLHTVKHGEKGIDVDAENCAVCIENFKVKDIIRILPCKHIFH 292

Query: 236 ANCIDPWLRQQGTCPVCKL---RAGSGWHETRQV-EMDA 270
             CIDPWL    TCP+CKL   +A   W E   V EM A
Sbjct: 293 RICIDPWLLDHRTCPMCKLDVIKALGYWGEPGDVQEMPA 331

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1

 Score = 68.6 bits (166), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 185 SSSSPAEQKKLET--SISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW 242
           +   PA+ +K++   +I +        L C VC E   VGE VR LPC H FH +CI PW
Sbjct: 199 TGPPPADNEKIQALPTIQITEEHVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPW 258

Query: 243 LRQQGTCPVCK 253
           L Q  TCPVC+
Sbjct: 259 LEQHDTCPVCR 269

Xenopus laevis (taxid: 8355)

>sp|Q5DTZ6|RN150_MOUSE RING finger protein 150 OS=Mus musculus GN=Rnf150 PE=2 SV=2

 Score = 68.6 bits (166), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 182 QLGSSSSPAEQKKLETSISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQFHANCID 240
           +LG ++  A  K    +I  G+ +TE +   C VC+E     ++VR LPC H FH +C+D
Sbjct: 246 RLGDAAKKAISKLQVRTIRKGDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVD 305

Query: 241 PWLRQQGTCPVCKL 254
           PWL    TCP+CK+
Sbjct: 306 PWLLDHRTCPMCKM 319

Mus musculus (taxid: 10090)

>sp|Q9ULK6|RN150_HUMAN RING finger protein 150 OS=Homo sapiens GN=RNF150 PE=2 SV=2

 Score = 68.6 bits (166), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 182 QLGSSSSPAEQKKLETSISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQFHANCID 240
           +LG ++  A  K    +I  G+ +TE +   C VC+E     ++VR LPC H FH +C+D
Sbjct: 247 RLGDAAKKAISKLQIRTIKKGDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVD 306

Query: 241 PWLRQQGTCPVCKL 254
           PWL    TCP+CK+
Sbjct: 307 PWLLDHRTCPMCKM 320

Homo sapiens (taxid: 9606)

>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 185 SSSSPAEQKKLET--SISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW 242
           +   PA+ +K++   +I +        L C VC E   VGE VR LPC H FH +CI PW
Sbjct: 198 TGPPPADTEKIQALPTIQITEEHVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPW 257

Query: 243 LRQQGTCPVCK 253
           L Q  TCPVC+
Sbjct: 258 LEQHDTCPVCR 268

Xenopus tropicalis (taxid: 8364)

>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 178 ASSMQLGSSSSPAEQKKLETSISVGNLKTEDELT---CTVCLEQVNVGEIVRSLPCLHQF 234
           A   Q  +  S  ++  ++     G    E +L    C +C+E     + +R LPC H+F
Sbjct: 266 AKDQQSRNLCSVTKKAIMKIPTKTGKFSDEKDLDSDCCAICIEAYKPTDTIRILPCKHEF 325

Query: 235 HANCIDPWLRQQGTCPVCKL 254
           H NCIDPWL +  TCP+CKL
Sbjct: 326 HKNCIDPWLIEHRTCPMCKL 345

Regulation of gene expression during embryonic mesoderm formation. Putative role as transcription factor.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
255581543	276	protein binding protein, putative [Ricin	1.0	0.992	0.793	1e-113
359486786	275	PREDICTED: E3 ubiquitin-protein ligase S	1.0	0.996	0.792	1e-113
224109496	276	predicted protein [Populus trichocarpa]	1.0	0.992	0.782	1e-112
224104393	275	predicted protein [Populus trichocarpa]	0.996	0.992	0.728	1e-111
147779997	262	hypothetical protein VITISV_012400 [Viti	0.952	0.996	0.76	1e-110
449441410	275	PREDICTED: E3 ubiquitin-protein ligase S	0.992	0.989	0.768	1e-110
307136233	275	protein binding protein [Cucumis melo su	0.992	0.989	0.768	1e-109
359807355	274	uncharacterized protein LOC100777936 [Gl	0.956	0.956	0.8	1e-109
297820308	272	zinc finger family protein [Arabidopsis	0.989	0.996	0.716	1e-108
363807434	274	uncharacterized protein LOC100816448 [Gl	0.956	0.956	0.788	1e-108

>gi|255581543|ref|XP_002531577.1| protein binding protein, putative [Ricinus communis] gi|223528807|gb|EEF30813.1| protein binding protein, putative [Ricinus communis]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/276 (79%), Positives = 243/276 (88%), Gaps = 2/276 (0%)

Query: 1   MSFVFRGSRADLETGFPGFIPERRTVRIHAGRPVNSNSLAFLVTVLLLFMILNSHQMSSN 60
           MSFVFRG+RADLE GF GFIPERR VR+HA RPVNSNSL FLVTVLLLFMILNS QMS N
Sbjct: 1   MSFVFRGTRADLENGFQGFIPERRAVRVHATRPVNSNSLVFLVTVLLLFMILNSQQMSPN 60

Query: 61  FLLWIVLGIFLLATSLRMYATCQQLHAQAQAHAVA-SGLLGHTELRLQMPPAIAFASRGR 119
           FLLW+VLG+FL+ATSLRMY TCQQL AQAQAHA   SGLLGHTELRL MPP+IA A+RGR
Sbjct: 61  FLLWLVLGVFLMATSLRMYVTCQQLQAQAQAHATMASGLLGHTELRLHMPPSIALATRGR 120

Query: 120 LQGLRLQLALLDREFDELDYETLRALDADNVPTAASMSEEEINTLPVHKYKVSGSQSGAS 179
           LQGLRLQLALLDREFD+LDYETLRALD+DNVPT ASMS+EEIN LPVHKYK++  Q+G S
Sbjct: 121 LQGLRLQLALLDREFDDLDYETLRALDSDNVPTTASMSDEEINALPVHKYKLTALQTGGS 180

Query: 180 SMQLGSSSSPAEQKKLETSISVGNLK-TEDELTCTVCLEQVNVGEIVRSLPCLHQFHANC 238
           SMQ  SSS  AE KK +T+ +VG++K +EDELTC+VCLEQVNVGE++R+LPCLHQFHANC
Sbjct: 181 SMQQASSSVSAEPKKQDTANAVGSMKASEDELTCSVCLEQVNVGELIRTLPCLHQFHANC 240

Query: 239 IDPWLRQQGTCPVCKLRAGSGWHETRQVEMDASYMV 274
           IDPWLRQQGTCPVCK RA SGWHE  Q  +DASYMV
Sbjct: 241 IDPWLRQQGTCPVCKFRAASGWHENGQGGLDASYMV 276

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486786|ref|XP_002283148.2| PREDICTED: E3 ubiquitin-protein ligase SDIR1-like [Vitis vinifera] gi|296086209|emb|CBI31650.3| unnamed protein product [Vitis vinifera]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/275 (79%), Positives = 241/275 (87%), Gaps = 1/275 (0%)

Query: 1   MSFVFRGSRADLETGFPGFIPERRTVRIHAGRPVNSNSLAFLVTVLLLFMILNSHQMSSN 60
           MSFVFRGSRAD+E+GFPGFIPERR VR+HA RPVN+NSLAFLVTVLLLFMILNSHQMS N
Sbjct: 1   MSFVFRGSRADIESGFPGFIPERRAVRVHAARPVNTNSLAFLVTVLLLFMILNSHQMSPN 60

Query: 61  FLLWIVLGIFLLATSLRMYATCQQLHAQAQAHAVA-SGLLGHTELRLQMPPAIAFASRGR 119
           FL+W+VLGIFL+AT+LRMYATCQQL AQAQAHA A SGLLGHTELRL MPP+IA A+RGR
Sbjct: 61  FLIWLVLGIFLMATTLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALATRGR 120

Query: 120 LQGLRLQLALLDREFDELDYETLRALDADNVPTAASMSEEEINTLPVHKYKVSGSQSGAS 179
           LQGLRLQLALLDREFD+LDYETLRALD++NVPT  SMSEEEIN LPVHKYKV+G+Q G S
Sbjct: 121 LQGLRLQLALLDREFDDLDYETLRALDSENVPTTPSMSEEEINALPVHKYKVAGTQGGGS 180

Query: 180 SMQLGSSSSPAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCI 239
           SMQ GSSS+ AE+K+   +        +DELTC+VCLEQVNVGE++RSLPCLHQFHANCI
Sbjct: 181 SMQQGSSSASAEKKQDINNAVASTKAPDDELTCSVCLEQVNVGELIRSLPCLHQFHANCI 240

Query: 240 DPWLRQQGTCPVCKLRAGSGWHETRQVEMDASYMV 274
           DPWLRQQGTCPVCK RA  GW E  Q  MDASYMV
Sbjct: 241 DPWLRQQGTCPVCKFRAAPGWQENGQGGMDASYMV 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109496|ref|XP_002315216.1| predicted protein [Populus trichocarpa] gi|222864256|gb|EEF01387.1| predicted protein [Populus trichocarpa]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/276 (78%), Positives = 246/276 (89%), Gaps = 2/276 (0%)

Query: 1   MSFVFRGSRADLETGFPGFIPERRTVRIHAGRPVNSNSLAFLVTVLLLFMILNSHQMSSN 60
           MSFVFRG+R+D+E GFP F+PERRT+R+HA RPVNSNSL FLVTVLLLFMILNSHQMS N
Sbjct: 1   MSFVFRGARSDIENGFPSFVPERRTLRVHATRPVNSNSLVFLVTVLLLFMILNSHQMSPN 60

Query: 61  FLLWIVLGIFLLATSLRMYATCQQLHAQAQAHAV-ASGLLGHTELRLQMPPAIAFASRGR 119
           FLLW+VLG+F +AT+LRMYATCQQL AQAQAHAV ASGLLGHTELRL MPP+IA A+RGR
Sbjct: 61  FLLWLVLGVFFMATTLRMYATCQQLQAQAQAHAVMASGLLGHTELRLHMPPSIALATRGR 120

Query: 120 LQGLRLQLALLDREFDELDYETLRALDADNVPTAASMSEEEINTLPVHKYKVSGSQSGAS 179
           LQGLRLQLALLDREFD+LDYETLRALD DNVP   SMSEEEIN LPVHKYKV+G Q+G S
Sbjct: 121 LQGLRLQLALLDREFDDLDYETLRALDGDNVPNGTSMSEEEINALPVHKYKVTGPQNGGS 180

Query: 180 SMQLGSSSSPAEQKKLETSISVGNLK-TEDELTCTVCLEQVNVGEIVRSLPCLHQFHANC 238
           SMQ  SSS  AEQKK +T  ++G++K ++DELTC+VCLEQV++GE++R+LPCLHQFHANC
Sbjct: 181 SMQQASSSVSAEQKKQDTGNAIGSMKSSDDELTCSVCLEQVSMGEVIRTLPCLHQFHANC 240

Query: 239 IDPWLRQQGTCPVCKLRAGSGWHETRQVEMDASYMV 274
           IDPWLRQQGTCPVCK RAGSGW+E  Q  +DASYMV
Sbjct: 241 IDPWLRQQGTCPVCKFRAGSGWNENGQGGLDASYMV 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104393|ref|XP_002313422.1| predicted protein [Populus trichocarpa] gi|222849830|gb|EEE87377.1| predicted protein [Populus trichocarpa]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/276 (72%), Positives = 228/276 (82%), Gaps = 3/276 (1%)

Query: 1   MSFVFRGSRADLETGFPGFIPERRTVRIHAGRPVNSNSLAFLVTVLLLFMILNSHQMSSN 60
           MSFVFRGSR D+E+GF GFIPER  VRIHA RPVNSNSLAFLVTVLLLFMILNSHQMS N
Sbjct: 1   MSFVFRGSRGDIESGFSGFIPERPAVRIHAARPVNSNSLAFLVTVLLLFMILNSHQMSPN 60

Query: 61  FLLWIVLGIFLLATSLRMYATC-QQLHAQAQAHAVASGLLGHTELRLQMPPAIAFASRGR 119
           FLLW+V+G+FL+ATSLRMYATC Q         A ASGL+GHTELRL MPP+IAFA+RGR
Sbjct: 61  FLLWLVVGVFLMATSLRMYATCQQLQAQARAHAAAASGLMGHTELRLHMPPSIAFATRGR 120

Query: 120 LQGLRLQLALLDREFDELDYETLRALDADNVPTAASMSEEEINTLPVHKYKVSGSQSGAS 179
           LQGLRLQLALLDREFD+LDY+TLRALD+ N  T  SM+EEEIN LPVHKYKV   ++G++
Sbjct: 121 LQGLRLQLALLDREFDDLDYDTLRALDSGNAST-TSMTEEEINALPVHKYKVPVQENGSA 179

Query: 180 SMQLGSSSSPAEQKKLETSISVGNLKT-EDELTCTVCLEQVNVGEIVRSLPCLHQFHANC 238
           S+Q  SSSS   + K ++  + GN+KT EDELTCT+CLEQVN GE+VRSLPCLHQFH NC
Sbjct: 180 SLQHASSSSAPAETKQDSKNADGNMKTSEDELTCTICLEQVNRGELVRSLPCLHQFHTNC 239

Query: 239 IDPWLRQQGTCPVCKLRAGSGWHETRQVEMDASYMV 274
           IDPWLRQQGTCPVCK   GSGW E+R+ E D S MV
Sbjct: 240 IDPWLRQQGTCPVCKFLIGSGWQESRESESDGSDMV 275

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779997|emb|CAN60068.1| hypothetical protein VITISV_012400 [Vitis vinifera]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/275 (76%), Positives = 229/275 (83%), Gaps = 14/275 (5%)

Query: 1   MSFVFRGSRADLETGFPGFIPERRTVRIHAGRPVNSNSLAFLVTVLLLFMILNSHQMSSN 60
           MSFVFRGSRAD+E+GFPGFIPERR VR+HA RPVN+NSLAFLVTVLLLFMILNSHQMS N
Sbjct: 1   MSFVFRGSRADIESGFPGFIPERRAVRVHAARPVNTNSLAFLVTVLLLFMILNSHQMSPN 60

Query: 61  FLLWIVLGIFLLATSLRMYATC-QQLHAQAQAHAVASGLLGHTELRLQMPPAIAFASRGR 119
           FL+W+VLGIFL+AT+LRMYATC Q         A ASGLLGHTELRL MPP+IA A+RGR
Sbjct: 61  FLIWLVLGIFLMATTLRMYATCQQLQAHAQAHAAAASGLLGHTELRLHMPPSIALATRGR 120

Query: 120 LQGLRLQLALLDREFDELDYETLRALDADNVPTAASMSEEEINTLPVHKYKVSGSQSGAS 179
           LQGLRLQLALLDREFD+LDYETLRALD++NVPT  SMSEEEIN LPVHKYKV+G+Q G S
Sbjct: 121 LQGLRLQLALLDREFDDLDYETLRALDSENVPTTPSMSEEEINALPVHKYKVAGTQGGGS 180

Query: 180 SMQLGSSSSPAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCI 239
           SMQ GSSS+ AE               +DELTC+VCLEQVNVGE++RSLPCLHQFHANCI
Sbjct: 181 SMQQGSSSASAEAP-------------DDELTCSVCLEQVNVGELIRSLPCLHQFHANCI 227

Query: 240 DPWLRQQGTCPVCKLRAGSGWHETRQVEMDASYMV 274
           DPWLRQQGTCPVCK RA  GW E  Q  MDASYMV
Sbjct: 228 DPWLRQQGTCPVCKFRAAPGWQENGQGGMDASYMV 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441410|ref|XP_004138475.1| PREDICTED: E3 ubiquitin-protein ligase SDIR1-like [Cucumis sativus]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/277 (76%), Positives = 238/277 (85%), Gaps = 5/277 (1%)

Query: 1   MSFVFRGSRA-DLETGFPGFIPERRTVRIHAGRPVNSNSLAFLVTVLLLFMILNSHQMSS 59
           MSFVFRG+R  D+E G  GFIPERR +R+HA RPVNSNSLAFLVTVLLLFMILNSHQMS 
Sbjct: 1   MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60

Query: 60  NFLLWIVLGIFLLATSLRMYATCQQLHAQAQAHAVA-SGLLGHTELRLQMPPAIAFASRG 118
           NFLLW+VLG+FL+AT+LRMYATCQQL AQAQA A+A SGLLGHTELRL MPP+IA A+RG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 119 RLQGLRLQLALLDREFDELDYETLRALDADNVPTAASMSEEEINTLPVHKYKVSGSQSGA 178
           RLQGLRLQLALLDREFD+LDYETLRALD+DN PT  SMSEE+IN LPVHKYKVSG QS +
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDS 180

Query: 179 SSMQLGSSSSPAEQKKLETSISVGNLKT-EDELTCTVCLEQVNVGEIVRSLPCLHQFHAN 237
           S  Q  SSS   E+++ ++  +VG+ KT EDELTC+VCLEQVNVGE++RSLPCLHQFHAN
Sbjct: 181 SVNQQASSSESIEKRQ-DSVNAVGSTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHAN 239

Query: 238 CIDPWLRQQGTCPVCKLRAGSGWHETRQVEMDASYMV 274
           CIDPWLRQQGTCPVCK RA SGW E  Q E DA YMV
Sbjct: 240 CIDPWLRQQGTCPVCKFRAVSGWSEQEQGETDA-YMV 275

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136233|gb|ADN34069.1| protein binding protein [Cucumis melo subsp. melo]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/277 (76%), Positives = 238/277 (85%), Gaps = 5/277 (1%)

Query: 1   MSFVFRGSRA-DLETGFPGFIPERRTVRIHAGRPVNSNSLAFLVTVLLLFMILNSHQMSS 59
           MSFVFRG+R  D+E G  GFIPERR +R+HA RPVNSNSLAFLVTVLLLFMILNSHQMS 
Sbjct: 1   MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60

Query: 60  NFLLWIVLGIFLLATSLRMYATCQQLHAQAQAHAVA-SGLLGHTELRLQMPPAIAFASRG 118
           NFLLW+VLG+FL+AT+LRMYATCQQL AQAQA A+A SGLLGHTELRL MPP+IA A+RG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 119 RLQGLRLQLALLDREFDELDYETLRALDADNVPTAASMSEEEINTLPVHKYKVSGSQSGA 178
           RLQGLRLQLALLDREFD+LDYETLRALD+DN PT  SMSEE+IN LPVHKYKVSG QS +
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDS 180

Query: 179 SSMQLGSSSSPAEQKKLETSISVGNLKT-EDELTCTVCLEQVNVGEIVRSLPCLHQFHAN 237
           S  Q  SSS  + +K+ ++  +VG+ KT EDELTC+VCLEQVNVGE++RSLPCLHQFHAN
Sbjct: 181 SVNQQASSSE-SNEKRQDSVNAVGSTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHAN 239

Query: 238 CIDPWLRQQGTCPVCKLRAGSGWHETRQVEMDASYMV 274
           CIDPWLRQQGTCPVCK RA SGW E  Q E DA YMV
Sbjct: 240 CIDPWLRQQGTCPVCKFRAVSGWSEQGQGETDA-YMV 275

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807355|ref|NP_001241380.1| uncharacterized protein LOC100777936 [Glycine max] gi|255645784|gb|ACU23384.1| unknown [Glycine max]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/265 (80%), Positives = 237/265 (89%), Gaps = 3/265 (1%)

Query: 1   MSFVFRGSRADLETGFPGFIPERRTVRIHAGRPVNSNSLAFLVTVLLLFMILNSHQMSSN 60
           MSFVFRG+RAD+E GFPGFIPERR +R+HA RP NSNSL FLVTVLLLFMILNSHQMS N
Sbjct: 1   MSFVFRGTRADIENGFPGFIPERRALRVHATRPSNSNSLTFLVTVLLLFMILNSHQMSPN 60

Query: 61  FLLWIVLGIFLLATSLRMYATCQQLHAQAQAHAVA-SGLLGHTELRLQMPPAIAFASRGR 119
           FLLW+VLG+FL+AT LRMYATCQQL AQAQAHA A SG+LGHTELRL MPP+IA ASRGR
Sbjct: 61  FLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGILGHTELRLHMPPSIALASRGR 120

Query: 120 LQGLRLQLALLDREFDELDYETLRALDADNVPTAASMSEEEINTLPVHKYKVSGSQSGAS 179
           LQGLRLQLALLDREFD+LDYETLRALD+DNV TA SM+EEEIN LPVHKYKVSG Q G S
Sbjct: 121 LQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVSGPQCGGS 180

Query: 180 SMQLGSSSSPAEQKKLETSISVGNLK-TEDELTCTVCLEQVNVGEIVRSLPCLHQFHANC 238
           SMQ  SSS+PAE KK + S +VG++K ++D+LTC+VCLEQVNVG+++RSLPCLHQFHANC
Sbjct: 181 SMQQASSSTPAE-KKQDNSNAVGSMKASDDDLTCSVCLEQVNVGDVLRSLPCLHQFHANC 239

Query: 239 IDPWLRQQGTCPVCKLRAGSGWHET 263
           IDPWLRQQGTCPVCK RAGSGW + 
Sbjct: 240 IDPWLRQQGTCPVCKFRAGSGWSDN 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820308|ref|XP_002878037.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297323875|gb|EFH54296.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/275 (71%), Positives = 222/275 (80%), Gaps = 4/275 (1%)

Query: 1   MSFVFRGSRADLETGFPGFIPERRTVRIHAGRPVNSNSLAFLVTVLLLFMILNSHQMSSN 60
           MSFVFRGSR DLE+GF GFIPERR +R+H  RPVNSNSLAFLVTVLLLFMILNSHQM  N
Sbjct: 1   MSFVFRGSRGDLESGFSGFIPERRAMRVHGARPVNSNSLAFLVTVLLLFMILNSHQMPPN 60

Query: 61  FLLWIVLGIFLLATSLRMYATC-QQLHAQAQAHAVASGLLGHTELRLQMPPAIAFASRGR 119
           FLLW+VLG+FL+AT+LRMYATC Q         A ASGL  HTELRL +PP+IA A+RGR
Sbjct: 61  FLLWLVLGVFLMATTLRMYATCQQLQAQAQAHAAAASGLFSHTELRLHVPPSIALATRGR 120

Query: 120 LQGLRLQLALLDREFDELDYETLRALDADNVPTAASMSEEEINTLPVHKYKVSGSQSGAS 179
           LQGLRLQLALLDREFD+LDYETLRALD+DNV T  SMSEEEIN LPVHKYK    ++G S
Sbjct: 121 LQGLRLQLALLDREFDDLDYETLRALDSDNVST-TSMSEEEINALPVHKYKTLDPENGCS 179

Query: 180 SMQLGSSSSPAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCI 239
             +  S+SS AE+K  + S++     TEDELTC+VCLEQV VGEIVR+LPCLHQFHA CI
Sbjct: 180 LAKQASTSSSAEKK--QDSVTESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAGCI 237

Query: 240 DPWLRQQGTCPVCKLRAGSGWHETRQVEMDASYMV 274
           DPWLRQQGTCPVCK RA SGW E  +++ DAS MV
Sbjct: 238 DPWLRQQGTCPVCKFRAHSGWQEQDEIDDDASDMV 272

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807434|ref|NP_001242131.1| uncharacterized protein LOC100816448 [Glycine max] gi|255641194|gb|ACU20874.1| unknown [Glycine max]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/265 (78%), Positives = 237/265 (89%), Gaps = 3/265 (1%)

Query: 1   MSFVFRGSRADLETGFPGFIPERRTVRIHAGRPVNSNSLAFLVTVLLLFMILNSHQMSSN 60
           MSFVFRG+RAD+E GFPGFIPERR +R+HA RP NS SL F VTVLLLFMILNSHQMS N
Sbjct: 1   MSFVFRGTRADIENGFPGFIPERRALRVHATRPSNSTSLTFPVTVLLLFMILNSHQMSPN 60

Query: 61  FLLWIVLGIFLLATSLRMYATCQQLHAQAQAHAVA-SGLLGHTELRLQMPPAIAFASRGR 119
           FLLW+VLG+FL+AT LRMYATCQQL  QAQAHA A SG+LGHTELRL MPP+IA ASRGR
Sbjct: 61  FLLWLVLGVFLMATMLRMYATCQQLQVQAQAHAAAASGILGHTELRLHMPPSIALASRGR 120

Query: 120 LQGLRLQLALLDREFDELDYETLRALDADNVPTAASMSEEEINTLPVHKYKVSGSQSGAS 179
           LQGLRLQLALLDREFD+LDYETLRALD+DNV TA SM+EEEIN LPVHKYKVSG QSG+S
Sbjct: 121 LQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVSGPQSGSS 180

Query: 180 SMQLGSSSSPAEQKKLETSISVGNLK-TEDELTCTVCLEQVNVGEIVRSLPCLHQFHANC 238
           SMQ  SSS+PAE+K+ + S +VG++K ++DELTC+VCLEQV+VG+++RSLPCLHQFHANC
Sbjct: 181 SMQQTSSSTPAEKKQ-DNSTAVGSMKASDDELTCSVCLEQVDVGDVLRSLPCLHQFHANC 239

Query: 239 IDPWLRQQGTCPVCKLRAGSGWHET 263
           IDPWLRQQGTCPVCK RAGSGW + 
Sbjct: 240 IDPWLRQQGTCPVCKFRAGSGWSDN 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
TAIR|locus:2100021	273	SDIR1 "SALT- AND DROUGHT-INDUC	0.989	0.992	0.637	3.7e-87
TAIR|locus:2010582	634	AT1G04790 [Arabidopsis thalian	0.156	0.067	0.581	3.4e-19
DICTYBASE|DDB_G0282479	320	DDB_G0282479 "E3 ubiquitin-pro	0.182	0.156	0.4	1.6e-16
ZFIN|ZDB-GENE-060503-608	301	si:ch211-81a5.1 "si:ch211-81a5	0.237	0.215	0.462	1.4e-13
ZFIN|ZDB-GENE-050522-525	392	zgc:113271 "zgc:113271" [Danio	0.222	0.155	0.460	6.5e-13
ZFIN|ZDB-GENE-060526-65	378	si:ch211-188g24.2 "si:ch211-18	0.178	0.129	0.551	8.1e-12
UNIPROTKB|K7GLM9	238	LOC100519887 "Uncharacterized	0.222	0.256	0.444	1.2e-11
TAIR|locus:2824666	201	AT1G35625 "AT1G35625" [Arabido	0.244	0.333	0.420	1.3e-11
ZFIN|ZDB-GENE-060213-1	418	rnf150a "ring finger protein 1	0.222	0.145	0.444	2.6e-11
UNIPROTKB|D6RIE5	230	RNF150 "RING finger protein 15	0.222	0.265	0.444	2.8e-11

TAIR|locus:2100021 SDIR1 "SALT- AND DROUGHT-INDUCED RING FINGER1" [Arabidopsis thaliana (taxid:3702)]

 Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
 Identities = 176/276 (63%), Positives = 196/276 (71%)

Query:     1 MSFVFRGSRADLETGFPG-FIPERRTVRIHAGRPVNSNSLAFLVTVLLLFMILNSHQMSS 59
             MSFVFRGSR DLE+GF G F+PERR +R+H  RPVNSNSLAFLVTVLLLFMILNSHQM  
Sbjct:     1 MSFVFRGSRGDLESGFSGGFLPERRAMRVHGARPVNSNSLAFLVTVLLLFMILNSHQMPP 60

Query:    60 NFLLWIVLGIFLLATSLRMYATCXXXXXXXXX-XXVASGLLGHTELRLQMPPAIAFASXX 118
             NFLLW+VLG+FL+AT+LRMYATC             ASGL  HTELRL +PP+IA A+  
Sbjct:    61 NFLLWLVLGVFLMATTLRMYATCQQLQAHAQAQAAAASGLFSHTELRLHVPPSIALATRG 120

Query:   119 XXXXXXXXXXXXDREFDELDYETLRALDADNVPTAASMSEEEINTLPVHKYKVXXXXXXX 178
                         DREFD+LDYETLRALD+DNV T  SMSEEEIN LPVHKYKV       
Sbjct:   121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVSTT-SMSEEEINALPVHKYKVLDPENGC 179

Query:   179 XXXXXXXXXXPAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANC 238
                        AE  K+  S +     TEDELTC+VCLEQV VGEIVR+LPCLHQFHA C
Sbjct:   180 SLAKQASTSSSAE--KMLDSANESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAGC 237

Query:   239 IDPWLRQQGTCPVCKLRAGSGWHETRQVEMDASYMV 274
             IDPWLRQQGTCPVCK RA SGW E  +++ DAS MV
Sbjct:   238 IDPWLRQQGTCPVCKFRAHSGWQEQDEIDDDASDMV 273

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006301 "postreplication repair" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2010582 AT1G04790 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 3.4e-19, Sum P(3) = 3.4e-19
 Identities = 25/43 (58%), Positives = 33/43 (76%)

Query:   211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
             TC +CLE   +G+ +R LPCLH+FH +CIDPWL +  +CPVCK
Sbjct:   588 TCVICLETPKIGDTIRHLPCLHKFHKDCIDPWLGRSKSCPVCK 630

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

DICTYBASE|DDB_G0282479 DDB_G0282479 "E3 ubiquitin-protein ligase DMA2" [Dictyostelium discoideum (taxid:44689)]

 Score = 154 (59.3 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
 Identities = 20/50 (40%), Positives = 36/50 (72%)

Query:   204 LKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
             LK  D  TC++CL+   V + +++LPC+H +H++C++ WL+ +  CP+CK
Sbjct:   265 LKGGDSKTCSICLDDFAVNDAIKTLPCIHHYHSDCVEKWLKIKSVCPICK 314

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-060503-608 si:ch211-81a5.1 "si:ch211-81a5.1" [Danio rerio (taxid:7955)]

 Score = 179 (68.1 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 31/67 (46%), Positives = 46/67 (68%)

Query:   189 PAEQKKLET--SISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ 246
             PAE++ + +  ++S+ + +    L C VC E+ +VGE VR LPCLH FH++CI PWL+  
Sbjct:   200 PAEKEMISSLPTVSISSEQAACRLECPVCREEFSVGESVRQLPCLHYFHSSCIVPWLQLH 259

Query:   247 GTCPVCK 253
              TCPVC+
Sbjct:   260 DTCPVCR 266

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-050522-525 zgc:113271 "zgc:113271" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
 Identities = 29/63 (46%), Positives = 41/63 (65%)

Query:   194 KLET-SISVGNLKTEDELT-CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPV 251
             KL T ++  G+ +TE +   C VC+E   + ++VR LPC H FH  C+DPWL +  TCP+
Sbjct:   217 KLTTRTVKRGDKETEPDFNHCAVCIEGYQLNDVVRILPCKHVFHKMCVDPWLNEHCTCPM 276

Query:   252 CKL 254
             CKL
Sbjct:   277 CKL 279

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-060526-65 si:ch211-188g24.2 "si:ch211-188g24.2" [Danio rerio (taxid:7955)]

 Score = 169 (64.5 bits), Expect = 8.1e-12, P = 8.1e-12
 Identities = 27/49 (55%), Positives = 36/49 (73%)

Query:   205 KTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
             +T +  +C VCLEQ N  + +R LPCLH+FH +C+DPWL  Q TCP+CK
Sbjct:   294 QTMETESCAVCLEQYNNNQCLRVLPCLHEFHRDCVDPWLLLQQTCPLCK 342

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|K7GLM9 LOC100519887 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 164 (62.8 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 28/63 (44%), Positives = 41/63 (65%)

Query:   194 KLET-SISVGNLKTEDELT-CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPV 251
             KL T ++  G+ +T+ +   C VC+E     ++VR LPC H FH +C+DPWL +  TCP+
Sbjct:    98 KLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRILPCKHVFHKSCVDPWLSEHCTCPM 157

Query:   252 CKL 254
             CKL
Sbjct:   158 CKL 160

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2824666 AT1G35625 "AT1G35625" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 29/69 (42%), Positives = 42/69 (60%)

Query:   193 KKLETSISVGNLKT-EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWL-RQQGTCP 250
             + + T +  G L+     +TC +C++   VGEI+R LPC H++HA CID WL R +  CP
Sbjct:    96 QSMPTEVYTGVLEEGSTSVTCAICIDDYRVGEILRILPCKHKYHAVCIDSWLGRCRSFCP 155

Query:   251 VCKLRAGSG 259
             VCK    +G
Sbjct:   156 VCKQNPRTG 164

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008233 "peptidase activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA;ISS

ZFIN|ZDB-GENE-060213-1 rnf150a "ring finger protein 150a" [Danio rerio (taxid:7955)]

 Score = 168 (64.2 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 28/63 (44%), Positives = 41/63 (65%)

Query:   194 KLET-SISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPV 251
             KL+  +I  G+ +T+ +   C VC+E     ++VR LPC H FH NC+DPWL+   TCP+
Sbjct:   245 KLQVRTIRKGDKETDSDFDNCAVCIEDYKPNDVVRILPCRHVFHRNCVDPWLQDHRTCPM 304

Query:   252 CKL 254
             CK+
Sbjct:   305 CKM 307

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|D6RIE5 RNF150 "RING finger protein 150" [Homo sapiens (taxid:9606)]

 Score = 161 (61.7 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 28/63 (44%), Positives = 40/63 (63%)

Query:   194 KLET-SISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPV 251
             KL+  +I  G+ +TE +   C VC+E     ++VR LPC H FH +C+DPWL    TCP+
Sbjct:    89 KLQIRTIKKGDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPM 148

Query:   252 CKL 254
             CK+
Sbjct:   149 CKM 151

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M2S6	SDIR1_ARATH	6, ., 3, ., 2, ., -	0.7137	0.9890	0.9926	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018451001 SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (275 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	274
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	2e-16
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	1e-11
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	2e-09
smart00184	40	smart00184, RING, Ring finger	2e-09
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	5e-08
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	3e-07
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	3e-07
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	2e-06
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	3e-06
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	2e-04
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	5e-04
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	0.004

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 70.9 bits (174), Expect = 2e-16
 Identities = 21/43 (48%), Positives = 27/43 (62%)

Query: 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
            C +CL++   GE V  LPC H FH  C+D WLR   TCP+C+
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCR 44

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 58.2 bits (141), Expect = 1e-11
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCK 253
            C +CLE     E V  LPC H F  +CID WL+  + TCP+C+
Sbjct: 1   ECPICLE--EFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCR 42

Length = 45

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 51.7 bits (124), Expect = 2e-09
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
           +EL C +CL+   + + V   PC H F   CI  +L+++  CP+C+
Sbjct: 1   EELECPICLD--LLRDPVVLTPCGHVFCRECILRYLKKKSKCPICR 44

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG-TCPVC 252
           C +CLE     +    LPC H F  +CI  WL     TCP+C
Sbjct: 1   CPICLE--EYLKDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 47.9 bits (114), Expect = 5e-08
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG-TCPVC 252
           C +CLE     + V  LPC H F + CI  WL     TCP+C
Sbjct: 1   CPICLE--EPKDPVTILPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 50.8 bits (121), Expect = 3e-07
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 10/74 (13%)

Query: 190 AEQKKLETSISVGNLK-TEDELT--------CTVCLEQVNVGEIVRSLPCLHQFHANCID 240
           +  + + T+ + G+LK    E          C +C+      + +R LPC H+FH  C+D
Sbjct: 295 SSSEAIPTTTTKGSLKPLSIERAVEADKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVD 354

Query: 241 PWL-RQQGTCPVCK 253
            WL      CPVC+
Sbjct: 355 KWLLGYSNKCPVCR 368

Length = 374

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 10/56 (17%)

Query: 208 DELTCTVCLEQVNVGEIVRSLP----------CLHQFHANCIDPWLRQQGTCPVCK 253
           ++  C +C    +        P          C H FH +CI  WL+ + TCP+C+
Sbjct: 18  EDDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 212 CTVCLEQVNVGEIVRS----LP-CLHQFHANCIDPWLRQQGTCPVCK 253
           C +C+E+V   EI       L  C H F   CID W +++ TCPVC+
Sbjct: 177 CAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCR 223

Length = 238

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 10/59 (16%)

Query: 206 TEDELTCTVCLEQV----------NVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKL 254
           T  + TCT+C++++           +    + LPC H  H +C+  WL +Q TCP+C+ 
Sbjct: 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRR 342

Length = 491

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 230 CLHQFHANCIDPWLRQQGTCPVCK 253
           C H FH +CI  WL  +G CP+ +
Sbjct: 54  CNHAFHDHCIYRWLDTKGVCPLDR 77

Length = 88

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)

Query: 230 CLHQFHANCIDPWLRQ---QGTCPVCK 253
           C H FH +CI  WL     +G CP+C+
Sbjct: 52  CKHNFHMHCILKWLATETSKGLCPMCR 78

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 34.3 bits (79), Expect = 0.004
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 208 DELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCK 253
           ++  C +CLE+      V  LPC H      C    LR +  CP+C+
Sbjct: 1   EDDLCVICLERP---RNVVFLPCGHLCLCEECAK-RLRSKKKCPICR 43

Length = 49

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.62
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.52
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.25
PHA02929	238	N1R/p28-like protein; Provisional	99.19
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.12
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.11
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.11
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.1
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.01
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.98
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.96
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.94
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.93
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.81
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.77
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.76
PHA02926	242	zinc finger-like protein; Provisional	98.73
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.73
PF14634	44	zf-RING_5: zinc-RING finger domain	98.7
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.67
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.65
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.62
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.47
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.45
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.4
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.34
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.33
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.27
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.27
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	98.23
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.21
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.2
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.17
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.11
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.09
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.09
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.05
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	98.03
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.96
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.94
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.89
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.85
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.79
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.68
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.64
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.6
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.59
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.51
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.42
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.41
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.37
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.14
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.1
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	97.03
COG5152	259	Uncharacterized conserved protein, contains RING a	96.95
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	96.88
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.88
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	96.87
KOG2660	331	consensus Locus-specific chromosome binding protei	96.78
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.55
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	96.55
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	96.45
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.24
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	96.21
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.18
PHA02825	162	LAP/PHD finger-like protein; Provisional	95.98
PHA02862	156	5L protein; Provisional	95.97
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.87
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	95.86
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.75
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	95.71
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	95.66
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.55
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	95.34
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.19
COG5175	480	MOT2 Transcriptional repressor [Transcription]	94.94
KOG3039	303	consensus Uncharacterized conserved protein [Funct	94.89
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.86
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	94.85
KOG1002	791	consensus Nucleotide excision repair protein RAD16	94.81
KOG4739	233	consensus Uncharacterized protein involved in syna	94.69
PHA03096	284	p28-like protein; Provisional	94.67
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	94.62
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	94.29
COG5222	427	Uncharacterized conserved protein, contains RING Z	94.11
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	93.84
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	93.66
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	93.39
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	92.83
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	92.36
KOG0298	1394	consensus DEAD box-containing helicase-like transc	92.33
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	92.33
KOG3002	299	consensus Zn finger protein [General function pred	92.28
KOG1940	276	consensus Zn-finger protein [General function pred	92.27
KOG1001	674	consensus Helicase-like transcription factor HLTF/	91.77
PF04641	260	Rtf2: Rtf2 RING-finger	91.68
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	91.53
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	90.44
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	90.01
KOG1609	323	consensus Protein involved in mRNA turnover and st	89.75
KOG4367	699	consensus Predicted Zn-finger protein [Function un	89.05
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	88.93
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	87.61
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	86.85
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	85.88
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	85.57
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	84.97
KOG3899	381	consensus Uncharacterized conserved protein [Funct	84.64
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	84.47
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	84.06
KOG0825	1134	consensus PHD Zn-finger protein [General function	83.09
KOG1829	580	consensus Uncharacterized conserved protein, conta	82.45
KOG3053	293	consensus Uncharacterized conserved protein [Funct	80.87
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	80.18

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=3.7e-16  Score=145.14  Aligned_cols=82  Identities=38%  Similarity=0.799  Sum_probs=68.0

Q ss_pred             CCCHHHHhhCCCeeeeccCCCCCCCcccCCCCCChhHhhhhhhccccCCCCCCCcccccccccccccCCeeEEeCCCCcc
Q 024005          155 SMSEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQF  234 (274)
Q Consensus       155 ~ls~e~I~~Lp~~~~~~~~~~~~~s~~~~~sss~~~~~~~~~~~~~~~~~~~~e~~~C~ICLe~~~~~~~v~~lpCgH~F  234 (274)
                      .+.++.++.+|..+|+.....                               +....|+||+|+|..|++++.|||+|.|
T Consensus       206 r~~k~~l~~~p~~~f~~~~~~-------------------------------~~~~~CaIClEdY~~GdklRiLPC~H~F  254 (348)
T KOG4628|consen  206 RLIKRLLKKLPVRTFTKGDDE-------------------------------DATDTCAICLEDYEKGDKLRILPCSHKF  254 (348)
T ss_pred             hhHHHHHhhCCcEEecccccc-------------------------------CCCceEEEeecccccCCeeeEecCCCch
Confidence            477888999999999765431                               1114899999999999999999999999


Q ss_pred             ChhhHHHHHhcCCC-CccccccccCCCCCCCCcc
Q 024005          235 HANCIDPWLRQQGT-CPVCKLRAGSGWHETRQVE  267 (274)
Q Consensus       235 H~~CI~~WL~~~~t-CPlCR~~i~~~~~~~~~~~  267 (274)
                      |..||++||.+.++ ||+||+++......+...|
T Consensus       255 H~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~e  288 (348)
T KOG4628|consen  255 HVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVSE  288 (348)
T ss_pred             hhccchhhHhhcCccCCCCCCcCCCCCCCCCccC
Confidence            99999999988865 9999999987766665555

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.52  E-value=4.7e-15  Score=98.73  Aligned_cols=43  Identities=49%  Similarity=1.214  Sum_probs=40.5

Q ss_pred             cccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCcccc
Q 024005          211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK  253 (274)
Q Consensus       211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR  253 (274)
                      .|+||++++..++.+..++|+|.||.+||.+|++++.+||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            6999999999899999999999999999999999999999997

...

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.25  E-value=4.9e-12  Score=93.38  Aligned_cols=45  Identities=38%  Similarity=0.902  Sum_probs=36.0

Q ss_pred             cccccccccccccC----------CeeEEeCCCCccChhhHHHHHhcCCCCcccc
Q 024005          209 ELTCTVCLEQVNVG----------EIVRSLPCLHQFHANCIDPWLRQQGTCPVCK  253 (274)
Q Consensus       209 ~~~C~ICLe~~~~~----------~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR  253 (274)
                      ++.|+||++.+...          -.+...+|||.||..||.+||+.+.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            44599999999322          2455567999999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.19  E-value=1.5e-11  Score=109.79  Aligned_cols=51  Identities=37%  Similarity=0.769  Sum_probs=41.8

Q ss_pred             CcccccccccccccCCe-----eEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005          208 DELTCTVCLEQVNVGEI-----VRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS  258 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~-----v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~  258 (274)
                      .+..|+||++.+..++.     ...++|+|.||..||.+|++.+.+||+||..+..
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~  228 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFIS  228 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeE
Confidence            45689999999775431     2345699999999999999999999999998764

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=3e-11  Score=109.46  Aligned_cols=51  Identities=33%  Similarity=0.916  Sum_probs=46.2

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHh-cCCCCccccccccC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR-QQGTCPVCKLRAGS  258 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~-~~~tCPlCR~~i~~  258 (274)
                      ....|+|||++|..++.++.+||.|.||..|+++|+. -+..||+||..++.
T Consensus       322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            3468999999999999999999999999999999998 46689999998874

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=3.2e-11  Score=108.75  Aligned_cols=51  Identities=29%  Similarity=0.731  Sum_probs=45.4

Q ss_pred             CCCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005          206 TEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       206 ~~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      .+...+|.+|||....+   ..+||||+||+.||..|...+..||+||.+...+
T Consensus       236 ~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps  286 (293)
T KOG0317|consen  236 PEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPS  286 (293)
T ss_pred             CCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence            35567999999998766   7899999999999999999999999999988764

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.11  E-value=5.3e-11  Score=102.56  Aligned_cols=50  Identities=32%  Similarity=0.705  Sum_probs=41.8

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc----------------CCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ----------------QGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~----------------~~tCPlCR~~i~~~  259 (274)
                      .++.+|+||++.+..+   ..++|||.||+.||.+|+..                ...||+||..+...
T Consensus        16 ~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~   81 (193)
T PLN03208         16 GGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA   81 (193)
T ss_pred             CCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence            4678999999998765   67889999999999999852                24799999988654

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=4.5e-11  Score=110.82  Aligned_cols=51  Identities=35%  Similarity=0.958  Sum_probs=43.0

Q ss_pred             CCCccccccccccc-ccCC---------eeEEeCCCCccChhhHHHHHhcCCCCccccccc
Q 024005          206 TEDELTCTVCLEQV-NVGE---------IVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRA  256 (274)
Q Consensus       206 ~~e~~~C~ICLe~~-~~~~---------~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i  256 (274)
                      ..++..|.||++++ ..+.         ...+|||||++|-+|++.|++++.+||+||.++
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~  344 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV  344 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence            35677999999994 3331         345799999999999999999999999999994

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.01  E-value=1.8e-10  Score=78.59  Aligned_cols=47  Identities=32%  Similarity=0.793  Sum_probs=39.7

Q ss_pred             cccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCCccccccccC
Q 024005          209 ELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGS  258 (274)
Q Consensus       209 ~~~C~ICLe~~~~~~~v~~lpCgH~-FH~~CI~~WL~~~~tCPlCR~~i~~  258 (274)
                      +..|.||++....   +..+||||. ||..|+.+|++.+..||+||+++..
T Consensus         2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES   49 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred             cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence            4589999998653   588999999 9999999999999999999998753

...

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=2.8e-10  Score=99.95  Aligned_cols=53  Identities=26%  Similarity=0.583  Sum_probs=43.8

Q ss_pred             CCCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC---CCCccccccccCCCC
Q 024005          206 TEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ---GTCPVCKLRAGSGWH  261 (274)
Q Consensus       206 ~~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~---~tCPlCR~~i~~~~~  261 (274)
                      +.....|.|||+.-+.+   +++.|||.||+.||.+||..+   +.||+||..+.....
T Consensus        44 ~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v   99 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV   99 (230)
T ss_pred             CCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence            35678999999997766   677799999999999999764   468999998876543

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.96  E-value=4.6e-10  Score=72.69  Aligned_cols=39  Identities=38%  Similarity=1.009  Sum_probs=33.7

Q ss_pred             ccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccc
Q 024005          212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVC  252 (274)
Q Consensus       212 C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlC  252 (274)
                      |+||++.+..  .+..++|||.||.+||.+|++.+..||+|
T Consensus         1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            8999999884  56789999999999999999999999998

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.94  E-value=7.7e-10  Score=72.08  Aligned_cols=44  Identities=45%  Similarity=1.078  Sum_probs=36.7

Q ss_pred             cccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCCccccccc
Q 024005          211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRA  256 (274)
Q Consensus       211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i  256 (274)
                      .|+||++.+.  +.....+|+|.||..|+..|++. +..||.||..+
T Consensus         1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            4999999983  44455669999999999999998 77899998753

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=5.4e-10  Score=94.45  Aligned_cols=53  Identities=28%  Similarity=0.643  Sum_probs=44.8

Q ss_pred             CCCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005          206 TEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       206 ~~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      .+....|+|||+.+.... ...+.|||+||..||+.-++....||+|+++|..+
T Consensus       128 ~~~~~~CPiCl~~~sek~-~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  128 KEGTYKCPICLDSVSEKV-PVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK  180 (187)
T ss_pred             cccccCCCceecchhhcc-ccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence            355689999999998442 24578999999999999999999999999988765

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=1.7e-09  Score=107.61  Aligned_cols=52  Identities=35%  Similarity=0.874  Sum_probs=45.3

Q ss_pred             CCcccccccccccccCCe--eEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005          207 EDELTCTVCLEQVNVGEI--VRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS  258 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~--v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~  258 (274)
                      ..+..|+||+|.+..+..  ..++||+|+||..|+..|++++.+||.||..+..
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~  342 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYD  342 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence            357799999999988654  5789999999999999999999999999995543

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.77  E-value=3.8e-09  Score=69.68  Aligned_cols=38  Identities=34%  Similarity=0.900  Sum_probs=30.2

Q ss_pred             ccccccccccCCeeEEeCCCCccChhhHHHHHhcC----CCCccc
Q 024005          212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ----GTCPVC  252 (274)
Q Consensus       212 C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~----~tCPlC  252 (274)
                      |+||++.+..+   ..++|||.|+..||.+|.+..    ..||.|
T Consensus         1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999988   889999999999999999764    369987

>smart00504 Ubox Modified RING finger domain

Probab=98.76  E-value=7.4e-09  Score=73.37  Aligned_cols=46  Identities=26%  Similarity=0.463  Sum_probs=41.3

Q ss_pred             ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005          210 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS  258 (274)
Q Consensus       210 ~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~  258 (274)
                      ..|+||.+.+..+   ..++|||.|+..||.+|++.+.+||+|+..+..
T Consensus         2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~   47 (63)
T smart00504        2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH   47 (63)
T ss_pred             cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence            4799999999876   678999999999999999999999999988754

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PHA02926 zinc finger-like protein; Provisional

Probab=98.73  E-value=5.4e-09  Score=91.52  Aligned_cols=51  Identities=33%  Similarity=0.797  Sum_probs=38.1

Q ss_pred             CcccccccccccccC----C-eeEEe-CCCCccChhhHHHHHhcC------CCCccccccccC
Q 024005          208 DELTCTVCLEQVNVG----E-IVRSL-PCLHQFHANCIDPWLRQQ------GTCPVCKLRAGS  258 (274)
Q Consensus       208 e~~~C~ICLe~~~~~----~-~v~~l-pCgH~FH~~CI~~WL~~~------~tCPlCR~~i~~  258 (274)
                      .+.+|+||+|.....    + ....| +|+|.||..||..|.+.+      .+||+||..+..
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            567899999986422    1 12344 599999999999999753      359999997653

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.73  E-value=7.6e-09  Score=77.96  Aligned_cols=51  Identities=27%  Similarity=0.664  Sum_probs=38.9

Q ss_pred             CcccccccccccccC--------C--eeEEeCCCCccChhhHHHHHhc---CCCCccccccccC
Q 024005          208 DELTCTVCLEQVNVG--------E--IVRSLPCLHQFHANCIDPWLRQ---QGTCPVCKLRAGS  258 (274)
Q Consensus       208 e~~~C~ICLe~~~~~--------~--~v~~lpCgH~FH~~CI~~WL~~---~~tCPlCR~~i~~  258 (274)
                      +++.|.||...|...        +  .+..-.|+|.||..||.+||.+   +.+||+||+...-
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF   83 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence            366899999988632        1  2333349999999999999986   4689999997653

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.70  E-value=1e-08  Score=68.19  Aligned_cols=44  Identities=25%  Similarity=0.677  Sum_probs=38.2

Q ss_pred             cccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccc
Q 024005          211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKL  254 (274)
Q Consensus       211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~  254 (274)
                      .|+||++.|........++|||+||..|+.++......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            49999999965567788999999999999999866778999985

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.67  E-value=1.1e-08  Score=66.57  Aligned_cols=39  Identities=41%  Similarity=1.038  Sum_probs=33.8

Q ss_pred             ccccccccccCCeeEEeCCCCccChhhHHHHHh--cCCCCccc
Q 024005          212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR--QQGTCPVC  252 (274)
Q Consensus       212 C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~--~~~tCPlC  252 (274)
                      |+||++.+..+  ...++|||.||..||.+|++  ....||+|
T Consensus         1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            89999998855  35889999999999999998  45579988

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>smart00184 RING Ring finger

Probab=98.65  E-value=2.2e-08  Score=62.83  Aligned_cols=38  Identities=45%  Similarity=1.160  Sum_probs=32.6

Q ss_pred             ccccccccccCCeeEEeCCCCccChhhHHHHHh-cCCCCccc
Q 024005          212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR-QQGTCPVC  252 (274)
Q Consensus       212 C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~-~~~tCPlC  252 (274)
                      |+||++..   .....++|+|.||..|++.|++ .+..||.|
T Consensus         1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            78999983   3457889999999999999998 66679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.62  E-value=1.9e-08  Score=96.00  Aligned_cols=49  Identities=29%  Similarity=0.687  Sum_probs=43.7

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS  258 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~  258 (274)
                      +....|+||++.+..+   ..++|+|.||..||..|+.....||+||..+..
T Consensus        24 e~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~   72 (397)
T TIGR00599        24 DTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE   72 (397)
T ss_pred             ccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence            5677999999999866   578999999999999999998899999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=6.6e-08  Score=86.54  Aligned_cols=50  Identities=28%  Similarity=0.732  Sum_probs=43.3

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHH-HHhcCCC-CccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDP-WLRQQGT-CPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~-WL~~~~t-CPlCR~~i~~~  259 (274)
                      +.+.+|.||++.....   ..++|||+||..||.. |-+++.. ||+||+....+
T Consensus       213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk  264 (271)
T COG5574         213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK  264 (271)
T ss_pred             ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence            4577999999997766   8899999999999999 9887776 99999987654

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=4.7e-08  Score=87.62  Aligned_cols=53  Identities=34%  Similarity=0.721  Sum_probs=44.0

Q ss_pred             CCcccccccccccccCC-------eeEEeCCCCccChhhHHHHH--hcCCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGE-------IVRSLPCLHQFHANCIDPWL--RQQGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~-------~v~~lpCgH~FH~~CI~~WL--~~~~tCPlCR~~i~~~  259 (274)
                      .++..|+||-..+....       +...|.|+|+||..||+-|-  .++.+||.||.++..+
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~  283 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK  283 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence            35668999988887654       67889999999999999995  5678999999887543

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.40  E-value=1.8e-07  Score=69.13  Aligned_cols=47  Identities=30%  Similarity=0.639  Sum_probs=34.0

Q ss_pred             ccccccccccCCe-eEEeC-CCCccChhhHHHHHhcCCCCccccccccC
Q 024005          212 CTVCLEQVNVGEI-VRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRAGS  258 (274)
Q Consensus       212 C~ICLe~~~~~~~-v~~lp-CgH~FH~~CI~~WL~~~~tCPlCR~~i~~  258 (274)
                      |+-|......+++ ..... |.|.||.+||.+||..+..||+||++..-
T Consensus        34 C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~   82 (88)
T COG5194          34 CPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL   82 (88)
T ss_pred             CcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence            3334443333433 33344 99999999999999999999999997654

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.34  E-value=1.3e-07  Score=87.23  Aligned_cols=50  Identities=32%  Similarity=0.759  Sum_probs=45.8

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      ++...|.||.|.|..+   .++||+|.||.-||+..|..+..||.|+.++.+.
T Consensus        21 D~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es   70 (442)
T KOG0287|consen   21 DDLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTES   70 (442)
T ss_pred             HHHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccchh
Confidence            4677999999999998   8999999999999999999999999999987654

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=2.4e-07  Score=89.57  Aligned_cols=51  Identities=25%  Similarity=0.551  Sum_probs=41.4

Q ss_pred             cccccccccccccCCeeEEeCCCCccChhhHHHHHhcC-----CCCccccccccCCCCC
Q 024005          209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ-----GTCPVCKLRAGSGWHE  262 (274)
Q Consensus       209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~-----~tCPlCR~~i~~~~~~  262 (274)
                      +..|+|||+....+   ..+.|||+||..||-+.+...     ..||+|+..+..+.-.
T Consensus       186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~  241 (513)
T KOG2164|consen  186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLL  241 (513)
T ss_pred             CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccccee
Confidence            67899999998766   566699999999999977543     4799999988775433

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.27  E-value=4.9e-07  Score=66.57  Aligned_cols=49  Identities=29%  Similarity=0.499  Sum_probs=39.4

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCCccccccccCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSG  259 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~~  259 (274)
                      +...|+||.+-+..+   .++||||.|...||.+|++. +.+||+|+.++...
T Consensus         3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~   52 (73)
T PF04564_consen    3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES   52 (73)
T ss_dssp             GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred             cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence            467899999999977   78999999999999999999 88999999888764

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.27  E-value=5.9e-07  Score=61.18  Aligned_cols=42  Identities=26%  Similarity=0.772  Sum_probs=32.8

Q ss_pred             cccccccccccCCeeEEeCCC-----CccChhhHHHHHhcC--CCCcccc
Q 024005          211 TCTVCLEQVNVGEIVRSLPCL-----HQFHANCIDPWLRQQ--GTCPVCK  253 (274)
Q Consensus       211 ~C~ICLe~~~~~~~v~~lpCg-----H~FH~~CI~~WL~~~--~tCPlCR  253 (274)
                      .|.||++ ...++.....||.     |.+|..|+.+|+..+  .+||+|+
T Consensus         1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            3899999 3334455688974     899999999999654  4899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=98.23  E-value=6.9e-07  Score=85.15  Aligned_cols=49  Identities=33%  Similarity=0.856  Sum_probs=40.7

Q ss_pred             CCcccccccccccccCC-eeEEeCCCCccChhhHHHHHhcCCCCcccccccc
Q 024005          207 EDELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG  257 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~  257 (274)
                      .+..+|++|||.+...- .+....|.|.||..|+.+|  ...+||+||....
T Consensus       173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~  222 (493)
T KOG0804|consen  173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQS  222 (493)
T ss_pred             ccCCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcC
Confidence            46779999999998553 4556669999999999999  6789999998655

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.21  E-value=9.1e-07  Score=58.61  Aligned_cols=38  Identities=29%  Similarity=0.725  Sum_probs=22.3

Q ss_pred             ccccccccccC-CeeEEeCCCCccChhhHHHHHhcC----CCCc
Q 024005          212 CTVCLEQVNVG-EIVRSLPCLHQFHANCIDPWLRQQ----GTCP  250 (274)
Q Consensus       212 C~ICLe~~~~~-~~v~~lpCgH~FH~~CI~~WL~~~----~tCP  250 (274)
                      |+||.| +... +.-..|+|||.|+.+||.+|++++    ..||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 7543 345779999999999999999854    2576

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=3.6e-07  Score=67.02  Aligned_cols=49  Identities=37%  Similarity=0.794  Sum_probs=36.3

Q ss_pred             cccccccccccccC--------Ce-eEEeC-CCCccChhhHHHHHhc---CCCCcccccccc
Q 024005          209 ELTCTVCLEQVNVG--------EI-VRSLP-CLHQFHANCIDPWLRQ---QGTCPVCKLRAG  257 (274)
Q Consensus       209 ~~~C~ICLe~~~~~--------~~-v~~lp-CgH~FH~~CI~~WL~~---~~tCPlCR~~i~  257 (274)
                      +++|.||...|...        +. ...+. |.|.||..||.+|+..   +..||.||+...
T Consensus        20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            34899999998643        21 11233 8899999999999964   457999999764

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.17  E-value=6.8e-07  Score=81.06  Aligned_cols=50  Identities=28%  Similarity=0.617  Sum_probs=44.6

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      +.-+.|-||-+.+..+   ..++|||.||.-||...|..+..||+||.+....
T Consensus        23 Ds~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~es   72 (391)
T COG5432          23 DSMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPCES   72 (391)
T ss_pred             hhHHHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHHhh
Confidence            3456899999999988   7889999999999999999999999999977543

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.11  E-value=1.8e-06  Score=79.67  Aligned_cols=51  Identities=22%  Similarity=0.504  Sum_probs=37.6

Q ss_pred             cccccccccc-cccCC-eeEEeCCCCccChhhHHHHH-hcCCCCccccccccCC
Q 024005          209 ELTCTVCLEQ-VNVGE-IVRSLPCLHQFHANCIDPWL-RQQGTCPVCKLRAGSG  259 (274)
Q Consensus       209 ~~~C~ICLe~-~~~~~-~v~~lpCgH~FH~~CI~~WL-~~~~tCPlCR~~i~~~  259 (274)
                      +..|+||..+ +..++ .+..-+|||.||..|++..+ .....||.|+..+..+
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~   56 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKN   56 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence            4589999996 33343 22333799999999999955 4456899999887654

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=1.1e-06  Score=78.04  Aligned_cols=45  Identities=38%  Similarity=0.812  Sum_probs=40.3

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccc
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKL  254 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~  254 (274)
                      +++..|+||++.|..+   ..+||+|.||..|+..+......||.||.
T Consensus        11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence            5778999999999987   88999999999999999885568999993

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=1.7e-06  Score=67.09  Aligned_cols=51  Identities=25%  Similarity=0.615  Sum_probs=38.8

Q ss_pred             CCCccccccccccc-------------ccCCeeEEeC-CCCccChhhHHHHHhcCCCCccccccc
Q 024005          206 TEDELTCTVCLEQV-------------NVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRA  256 (274)
Q Consensus       206 ~~e~~~C~ICLe~~-------------~~~~~v~~lp-CgH~FH~~CI~~WL~~~~tCPlCR~~i  256 (274)
                      +...+.|+||...+             ..++...... |.|.||..||.+||+++..||+|.+.-
T Consensus        43 Di~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW  107 (114)
T KOG2930|consen   43 DIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW  107 (114)
T ss_pred             eeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence            34667899985432             2334455566 999999999999999999999997643

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=1.5e-06  Score=83.74  Aligned_cols=52  Identities=25%  Similarity=0.721  Sum_probs=40.0

Q ss_pred             CCcccccccccccccC---C-----------eeEEeCCCCccChhhHHHHHhc-CCCCccccccccC
Q 024005          207 EDELTCTVCLEQVNVG---E-----------IVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGS  258 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~---~-----------~v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~  258 (274)
                      +....|+||+..+.-.   .           .-..+||.|+||..|+.+|... +-.||+||.+++.
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            3455799999886322   1           1235699999999999999984 5589999998874

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=98.03  E-value=1.1e-06  Score=64.34  Aligned_cols=50  Identities=32%  Similarity=0.732  Sum_probs=24.8

Q ss_pred             ccccccccccc-cCCe--eEEe--CCCCccChhhHHHHHhc---C--------CCCccccccccCC
Q 024005          210 LTCTVCLEQVN-VGEI--VRSL--PCLHQFHANCIDPWLRQ---Q--------GTCPVCKLRAGSG  259 (274)
Q Consensus       210 ~~C~ICLe~~~-~~~~--v~~l--pCgH~FH~~CI~~WL~~---~--------~tCPlCR~~i~~~  259 (274)
                      ..|.||.+... .++.  +..-  .|+..||..|+.+||..   .        ++||.|+.++.-+
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~   68 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS   68 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence            47999999876 3221  2222  48999999999999963   1        2599999988654

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=4.7e-06  Score=77.69  Aligned_cols=55  Identities=24%  Similarity=0.514  Sum_probs=43.9

Q ss_pred             CCcccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCCccccccccCCCCCCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGSGWHETR  264 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~-FH~~CI~~WL~~~~tCPlCR~~i~~~~~~~~  264 (274)
                      +...+|.|||.+....   ..|||.|. .|..|.+.---+++.||+||+++..--.--.
T Consensus       288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~  343 (349)
T KOG4265|consen  288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV  343 (349)
T ss_pred             cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence            5578999999996655   89999994 6999998865567889999999876544333

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.94  E-value=2.3e-06  Score=87.60  Aligned_cols=51  Identities=24%  Similarity=0.770  Sum_probs=37.8

Q ss_pred             CCcccccccccccc-cCC---eeEEeCCCCccChhhHHHHHhc--CCCCcccccccc
Q 024005          207 EDELTCTVCLEQVN-VGE---IVRSLPCLHQFHANCIDPWLRQ--QGTCPVCKLRAG  257 (274)
Q Consensus       207 ~e~~~C~ICLe~~~-~~~---~v~~lpCgH~FH~~CI~~WL~~--~~tCPlCR~~i~  257 (274)
                      +.-.+|+||..-+. ...   .-++-.|.|.||..|+.+|++.  +++||+||..++
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            55678999987765 221   1123338999999999999986  458999997764

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=1.5e-06  Score=80.67  Aligned_cols=57  Identities=26%  Similarity=0.558  Sum_probs=46.0

Q ss_pred             CCcccccccccccccCCeeEEeC-CCCccChhhHHHHHhc-CCCCccccccccCCCCCCCCc
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQ-QGTCPVCKLRAGSGWHETRQV  266 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~-~~tCPlCR~~i~~~~~~~~~~  266 (274)
                      ..+..|+|||+.++..   +..+ |+|-||.+||..-++. +++||.||+.+.++..=...+
T Consensus        41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp   99 (381)
T KOG0311|consen   41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDP   99 (381)
T ss_pred             hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCc
Confidence            4567899999999866   5566 9999999999988865 668999999998876544433

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.85  E-value=3.4e-06  Score=85.01  Aligned_cols=51  Identities=29%  Similarity=0.498  Sum_probs=44.7

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCcccccccc
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG  257 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~  257 (274)
                      .....|++|+..+..+......+|+|+||..||..|-+...+||+||..+.
T Consensus       121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~  171 (1134)
T KOG0825|consen  121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFG  171 (1134)
T ss_pred             hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence            456689999999987766677789999999999999999999999998664

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=9.2e-06  Score=76.34  Aligned_cols=47  Identities=23%  Similarity=0.832  Sum_probs=37.8

Q ss_pred             cccccccccccCCeeEEeC-CCCccChhhHHHHHhc---CCCCcccccccc
Q 024005          211 TCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQ---QGTCPVCKLRAG  257 (274)
Q Consensus       211 ~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~---~~tCPlCR~~i~  257 (274)
                      .|.||.+-+.....+..+. |||+||..|+.+|+..   +.+||+||-.++
T Consensus         6 ~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~   56 (465)
T KOG0827|consen    6 ECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ   56 (465)
T ss_pred             eeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence            6999966666666666666 9999999999999976   358999995444

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.68  E-value=9e-06  Score=58.04  Aligned_cols=48  Identities=29%  Similarity=0.628  Sum_probs=24.7

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      +...|++|.+-+..+  +....|.|.||..||..-+.  ..||+|+.+.-.+
T Consensus         6 ~lLrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~q   53 (65)
T PF14835_consen    6 ELLRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQ   53 (65)
T ss_dssp             HTTS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S-S
T ss_pred             HhcCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHH
Confidence            456899999998854  55566999999999987444  4599999887544

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=3.1e-05  Score=73.31  Aligned_cols=50  Identities=34%  Similarity=0.796  Sum_probs=38.4

Q ss_pred             CcccccccccccccCC--eeEEeCCCCccChhhHHHHHhc--CCCCcccccccc
Q 024005          208 DELTCTVCLEQVNVGE--IVRSLPCLHQFHANCIDPWLRQ--QGTCPVCKLRAG  257 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~--~v~~lpCgH~FH~~CI~~WL~~--~~tCPlCR~~i~  257 (274)
                      ...+|+||++.+.-.-  .+..+.|||.|..+||++||.+  ...||.|+.+..
T Consensus         3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat   56 (463)
T KOG1645|consen    3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT   56 (463)
T ss_pred             ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence            3458999999997443  3445669999999999999963  236999977553

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=3.3e-05  Score=72.70  Aligned_cols=53  Identities=34%  Similarity=0.794  Sum_probs=39.5

Q ss_pred             CCcccccccccccccCC----eeEEeC-CCCccChhhHHHHH--hc-----CCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGE----IVRSLP-CLHQFHANCIDPWL--RQ-----QGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~----~v~~lp-CgH~FH~~CI~~WL--~~-----~~tCPlCR~~i~~~  259 (274)
                      ..+.+|.||++......    ...++| |.|.||..||+.|-  .+     .+.||.||......
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v  223 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV  223 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence            45779999999976432    123446 99999999999997  34     46799999866443

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=2.7e-05  Score=71.16  Aligned_cols=51  Identities=27%  Similarity=0.572  Sum_probs=42.0

Q ss_pred             cccccccccccccCCeeEEeCCCCccChhhHHHHHhcC-CCCccccccccCCCCC
Q 024005          209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ-GTCPVCKLRAGSGWHE  262 (274)
Q Consensus       209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~-~tCPlCR~~i~~~~~~  262 (274)
                      ...|+||+.....+   ..++|+|.||.-||+--.+.. .+|++||+++++..-.
T Consensus         7 ~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~   58 (324)
T KOG0824|consen    7 KKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDF   58 (324)
T ss_pred             CCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcchhc
Confidence            34799999997766   789999999999999877664 4699999999876433

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.51  E-value=2.3e-05  Score=71.52  Aligned_cols=52  Identities=25%  Similarity=0.581  Sum_probs=43.6

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHh-----------------------cCCCCccccccccCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR-----------------------QQGTCPVCKLRAGSG  259 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~-----------------------~~~tCPlCR~~i~~~  259 (274)
                      ....|.|||--|..++...+++|-|+||..|+.++|.                       .+..||+||..|...
T Consensus       114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e  188 (368)
T KOG4445|consen  114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE  188 (368)
T ss_pred             CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence            3457999999999999999999999999999998873                       123599999988653

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=3.7e-05  Score=77.76  Aligned_cols=50  Identities=26%  Similarity=0.566  Sum_probs=41.0

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHh-cCCCCccccccccCCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR-QQGTCPVCKLRAGSGW  260 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~-~~~tCPlCR~~i~~~~  260 (274)
                      .-.+|+.|-..++..   .+..|+|.||..||..-+. ++..||.|...++.+.
T Consensus       642 ~~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD  692 (698)
T KOG0978|consen  642 ELLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND  692 (698)
T ss_pred             hceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence            456999999877754   5667999999999999885 5678999999887653

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.00011  Score=70.42  Aligned_cols=49  Identities=31%  Similarity=0.669  Sum_probs=43.7

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS  258 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~  258 (274)
                      ..+..|.||+..+..+   +.+||||.||..||++-+.....||.||..+.+
T Consensus        82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCccccccccc
Confidence            5678999999998877   778999999999999988888899999998875

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=4.6e-05  Score=52.54  Aligned_cols=46  Identities=24%  Similarity=0.503  Sum_probs=35.2

Q ss_pred             ccccccccccccCCeeEEeCCCCc-cChhhHHHHHh-cCCCCccccccccC
Q 024005          210 LTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLR-QQGTCPVCKLRAGS  258 (274)
Q Consensus       210 ~~C~ICLe~~~~~~~v~~lpCgH~-FH~~CI~~WL~-~~~tCPlCR~~i~~  258 (274)
                      ++|.||+|.-...   ....|||. .|..|-.+-++ .+..||+||.++..
T Consensus         8 dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d   55 (62)
T KOG4172|consen    8 DECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD   55 (62)
T ss_pred             cceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence            5899999986654   45569994 68899666444 68899999998753

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.14  E-value=0.00017  Score=68.06  Aligned_cols=51  Identities=37%  Similarity=0.877  Sum_probs=41.4

Q ss_pred             CCccccccccccccc-CCeeEEeCCCCccChhhHHHHHhcCC--CCcccccccc
Q 024005          207 EDELTCTVCLEQVNV-GEIVRSLPCLHQFHANCIDPWLRQQG--TCPVCKLRAG  257 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~-~~~v~~lpCgH~FH~~CI~~WL~~~~--tCPlCR~~i~  257 (274)
                      +-+.-|..|=+.+.. ++.+-.|||.|+||..|+...|.++.  +||.||+-..
T Consensus       363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS  416 (518)
T KOG1941|consen  363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS  416 (518)
T ss_pred             HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence            456789999998863 45677899999999999999998765  7999995433

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.10  E-value=0.00017  Score=68.26  Aligned_cols=48  Identities=27%  Similarity=0.685  Sum_probs=39.2

Q ss_pred             cccccccccccccCCeeEEeCCCCccChhhHHHHHhc--CCCCccccccccCC
Q 024005          209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ--QGTCPVCKLRAGSG  259 (274)
Q Consensus       209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~--~~tCPlCR~~i~~~  259 (274)
                      -..|-||-|.   ...+.+-||||..|..|+..|-..  ..+||.||..|..-
T Consensus       369 FeLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt  418 (563)
T KOG1785|consen  369 FELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT  418 (563)
T ss_pred             HHHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence            4579999887   456688999999999999999744  46899999987643

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=97.03  E-value=0.00039  Score=48.82  Aligned_cols=42  Identities=29%  Similarity=0.631  Sum_probs=28.9

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhc--CCCCcc
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ--QGTCPV  251 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~--~~tCPl  251 (274)
                      -...|+|.+..+.  +.+....|+|.|-.+.|.+|+++  ...||+
T Consensus        10 ~~~~CPiT~~~~~--~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFE--DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-S--SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             eccCCCCcCChhh--CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            4568999999988  55777789999999999999954  346998

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.95  E-value=0.00037  Score=60.35  Aligned_cols=45  Identities=20%  Similarity=0.419  Sum_probs=39.2

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCcccccc
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLR  255 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~  255 (274)
                      -...|.||-.+|..+   ..+.|||.||..|...-++...+|-+|-+.
T Consensus       195 IPF~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~  239 (259)
T COG5152         195 IPFLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKA  239 (259)
T ss_pred             Cceeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchh
Confidence            345899999999988   778899999999998888889999999543

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=96.88  E-value=0.00054  Score=73.29  Aligned_cols=54  Identities=26%  Similarity=0.619  Sum_probs=44.1

Q ss_pred             CCCCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC----------CCCccccccccC
Q 024005          205 KTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ----------GTCPVCKLRAGS  258 (274)
Q Consensus       205 ~~~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~----------~tCPlCR~~i~~  258 (274)
                      +.+.++.|.||..+-........|.|+|.||..|.+.-|.+.          -.||+|+.++..
T Consensus      3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            345678999999887777788899999999999998877653          269999998764

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.88  E-value=0.00043  Score=66.54  Aligned_cols=53  Identities=26%  Similarity=0.654  Sum_probs=43.8

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWH  261 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~  261 (274)
                      +++..|+||...+..+  +....|||.||..|+.+|+..+..||.|+..+.....
T Consensus        19 ~~~l~C~~C~~vl~~p--~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~   71 (391)
T KOG0297|consen   19 DENLLCPICMSVLRDP--VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEE   71 (391)
T ss_pred             cccccCccccccccCC--CCCCCCCCcccccccchhhccCcCCcccccccchhhc
Confidence            5678999999998866  2225799999999999999999999999887765433

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.00085  Score=62.76  Aligned_cols=51  Identities=22%  Similarity=0.414  Sum_probs=44.2

Q ss_pred             CCCCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005          205 KTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS  258 (274)
Q Consensus       205 ~~~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~  258 (274)
                      .+.++..|+||...-...   ...||+|.-|..||.+.+...+.|=.||.++..
T Consensus       418 p~sEd~lCpICyA~pi~A---vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  418 PDSEDNLCPICYAGPINA---VFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             CCcccccCcceecccchh---hccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            346888999998775444   789999999999999999999999999998874

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=96.78  E-value=0.00032  Score=64.99  Aligned_cols=49  Identities=27%  Similarity=0.676  Sum_probs=40.8

Q ss_pred             CcccccccccccccCCeeEEeC-CCCccChhhHHHHHhcCCCCccccccccCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      .-.+|.+|-..+...   .+.. |.|.||..||.+.|..+..||.|...+...
T Consensus        14 ~~itC~LC~GYliDA---TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   14 PHITCRLCGGYLIDA---TTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT   63 (331)
T ss_pred             cceehhhccceeecc---hhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence            456899999988855   3444 999999999999999999999998877543

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.0025  Score=57.86  Aligned_cols=51  Identities=24%  Similarity=0.357  Sum_probs=39.7

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc--CCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ--QGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~--~~tCPlCR~~i~~~  259 (274)
                      ..+.+|++|-+.-..+  ....+|+|+||..||..-+..  ..+||.|-..+..-
T Consensus       237 t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~l  289 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPL  289 (298)
T ss_pred             cCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCcch
Confidence            4567899999987755  445669999999999886654  46899998877643

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=96.55  E-value=0.0017  Score=43.67  Aligned_cols=40  Identities=33%  Similarity=0.937  Sum_probs=27.4

Q ss_pred             ccccccccccCCeeEEeCCC-----CccChhhHHHHHhc--CCCCccc
Q 024005          212 CTVCLEQVNVGEIVRSLPCL-----HQFHANCIDPWLRQ--QGTCPVC  252 (274)
Q Consensus       212 C~ICLe~~~~~~~v~~lpCg-----H~FH~~CI~~WL~~--~~tCPlC  252 (274)
                      |-||++.-...+ ....||.     ...|.+|+.+|+..  +.+|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            789999877655 4567763     37899999999974  5579887

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.45  E-value=0.00092  Score=56.20  Aligned_cols=30  Identities=37%  Similarity=0.967  Sum_probs=27.7

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccCh
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHA  236 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~  236 (274)
                      ++.-+|.||||++..++.+.+|||..+||+
T Consensus       175 ddkGECvICLEdL~~GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  175 DDKGECVICLEDLEAGDTIARLPCLCIYHK  204 (205)
T ss_pred             ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence            566789999999999999999999999996

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=0.0021  Score=58.90  Aligned_cols=48  Identities=19%  Similarity=0.343  Sum_probs=41.6

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS  258 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~  258 (274)
                      -...|-||...|..+   +++.|+|+||..|...-+++...|++|-+....
T Consensus       240 ~Pf~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g  287 (313)
T KOG1813|consen  240 LPFKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHG  287 (313)
T ss_pred             CCccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccccc
Confidence            345799999999988   788899999999999988999999999776544

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.21  E-value=0.0034  Score=55.48  Aligned_cols=50  Identities=24%  Similarity=0.581  Sum_probs=40.2

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhc--------CCCCccccccccC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ--------QGTCPVCKLRAGS  258 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~--------~~tCPlCR~~i~~  258 (274)
                      -...|..|-..+..++.+ +|-|.|.||+.|+.+|-..        .-.||-|.+.|-.
T Consensus        49 Y~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP  106 (299)
T KOG3970|consen   49 YNPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP  106 (299)
T ss_pred             CCCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence            345799999999988774 5669999999999999754        2369999887743

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.18  E-value=0.0018  Score=52.99  Aligned_cols=35  Identities=20%  Similarity=0.559  Sum_probs=30.1

Q ss_pred             cccccccccccccCCeeEEeCCC------CccChhhHHHHH
Q 024005          209 ELTCTVCLEQVNVGEIVRSLPCL------HQFHANCIDPWL  243 (274)
Q Consensus       209 ~~~C~ICLe~~~~~~~v~~lpCg------H~FH~~CI~~WL  243 (274)
                      ..+|.||++.+...+.+..++|+      |.||.+|+.+|-
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~   66 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR   66 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence            45899999999986677888886      889999999994

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=95.98  E-value=0.0056  Score=51.41  Aligned_cols=48  Identities=19%  Similarity=0.579  Sum_probs=34.8

Q ss_pred             CCcccccccccccccCCeeEEeCCC--C---ccChhhHHHHHhcC--CCCccccccccC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCL--H---QFHANCIDPWLRQQ--GTCPVCKLRAGS  258 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCg--H---~FH~~CI~~WL~~~--~tCPlCR~~i~~  258 (274)
                      ..+..|-||.++...    -.-||.  .   ..|.+|+.+|+..+  ..|++|+++..-
T Consensus         6 ~~~~~CRIC~~~~~~----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i   60 (162)
T PHA02825          6 LMDKCCWICKDEYDV----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI   60 (162)
T ss_pred             CCCCeeEecCCCCCC----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence            356689999988542    234753  3   56999999999764  479999886643

>PHA02862 5L protein; Provisional

Probab=95.97  E-value=0.0044  Score=51.24  Aligned_cols=44  Identities=20%  Similarity=0.585  Sum_probs=33.2

Q ss_pred             ccccccccccccCCeeEEeCCC-----CccChhhHHHHHhc--CCCCcccccccc
Q 024005          210 LTCTVCLEQVNVGEIVRSLPCL-----HQFHANCIDPWLRQ--QGTCPVCKLRAG  257 (274)
Q Consensus       210 ~~C~ICLe~~~~~~~v~~lpCg-----H~FH~~CI~~WL~~--~~tCPlCR~~i~  257 (274)
                      +.|-||.++-...    .-||.     ...|.+|+.+|++.  +..|++|+.+..
T Consensus         3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~   53 (156)
T PHA02862          3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN   53 (156)
T ss_pred             CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence            4799999985432    35653     46799999999965  457999998764

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.87  E-value=0.0051  Score=41.60  Aligned_cols=45  Identities=24%  Similarity=0.540  Sum_probs=22.3

Q ss_pred             ccccccccccCC-eeEEeCCCCccChhhHHHHHh-cCCCCccccccc
Q 024005          212 CTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLR-QQGTCPVCKLRA  256 (274)
Q Consensus       212 C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~WL~-~~~tCPlCR~~i  256 (274)
                      |++|.+++...+ ...--+|++..+..|...-++ .+..||-||.+.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            789999985433 332334899999999888776 477899999864

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.86  E-value=0.0056  Score=57.51  Aligned_cols=46  Identities=28%  Similarity=0.579  Sum_probs=33.8

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS  258 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~  258 (274)
                      ...+.|.||+++...   ...+||||.-|  |..- -+....||+||+.+..
T Consensus       303 ~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~c-s~~l~~CPvCR~rI~~  348 (355)
T KOG1571|consen  303 PQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLC-SKHLPQCPVCRQRIRL  348 (355)
T ss_pred             CCCCceEEecCCccc---eeeecCCcEEE--chHH-HhhCCCCchhHHHHHH
Confidence            345689999999775   47899999866  5443 2345569999997753

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.75  E-value=0.0043  Score=48.02  Aligned_cols=33  Identities=27%  Similarity=0.692  Sum_probs=28.5

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHH
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCID  240 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~  240 (274)
                      .+...|++|-..+.. ......||||.||..|+.
T Consensus        76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence            566789999999986 577889999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.71  E-value=0.0025  Score=58.26  Aligned_cols=42  Identities=21%  Similarity=0.551  Sum_probs=32.8

Q ss_pred             cccccccccccccCCeeEEeCCCCcc-ChhhHHHHHhcCCCCcccccccc
Q 024005          209 ELTCTVCLEQVNVGEIVRSLPCLHQF-HANCIDPWLRQQGTCPVCKLRAG  257 (274)
Q Consensus       209 ~~~C~ICLe~~~~~~~v~~lpCgH~F-H~~CI~~WL~~~~tCPlCR~~i~  257 (274)
                      ...|.||++...   ....|+|||.. |.+|-...    ..||+||+.+.
T Consensus       300 ~~LC~ICmDaP~---DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAPR---DCVFLECGHMVTCTKCGKRM----NECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCCc---ceEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence            678999998844   45889999954 88886543    38999999764

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.66  E-value=0.007  Score=51.74  Aligned_cols=56  Identities=27%  Similarity=0.637  Sum_probs=39.2

Q ss_pred             CCcccccccccccccC----CeeEEeCCCCccChhhHHHHHhc-----C------CCCccccccccCCCCC
Q 024005          207 EDELTCTVCLEQVNVG----EIVRSLPCLHQFHANCIDPWLRQ-----Q------GTCPVCKLRAGSGWHE  262 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~----~~v~~lpCgH~FH~~CI~~WL~~-----~------~tCPlCR~~i~~~~~~  262 (274)
                      ++...|.||...-..|    ...--..||..||.-|+..||+.     +      ..||.|..++.-+.++
T Consensus       163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKmSg  233 (234)
T KOG3268|consen  163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKMSG  233 (234)
T ss_pred             hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeeccC
Confidence            4555788887543333    12223559999999999999974     1      3699999998776543

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.55  E-value=0.01  Score=55.55  Aligned_cols=50  Identities=26%  Similarity=0.631  Sum_probs=39.5

Q ss_pred             CCCCCcccccccccccccCCeeEEeCCCCccChhhHHHH--HhcCCCCccccccc
Q 024005          204 LKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW--LRQQGTCPVCKLRA  256 (274)
Q Consensus       204 ~~~~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~W--L~~~~tCPlCR~~i  256 (274)
                      ..++++..|-||-+...-.   ..+||+|..|.-|..+.  |-.++.||+||..-
T Consensus        56 dtDEen~~C~ICA~~~TYs---~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~  107 (493)
T COG5236          56 DTDEENMNCQICAGSTTYS---ARYPCGHQICHACAVRLRALYMQKGCPLCRTET  107 (493)
T ss_pred             ccccccceeEEecCCceEE---EeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence            3457788999999886644   78999999999997653  45678899999854

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=95.34  E-value=0.0097  Score=61.26  Aligned_cols=48  Identities=35%  Similarity=0.854  Sum_probs=37.2

Q ss_pred             CCcccccccccccccCCeeEEe-CCCCccChhhHHHHHhcC-------CCCccccc
Q 024005          207 EDELTCTVCLEQVNVGEIVRSL-PCLHQFHANCIDPWLRQQ-------GTCPVCKL  254 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~l-pCgH~FH~~CI~~WL~~~-------~tCPlCR~  254 (274)
                      .+...|.||.+.+...+.+-.- .|-|+||..||..|-++.       -.||.|..
T Consensus       189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs  244 (950)
T KOG1952|consen  189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS  244 (950)
T ss_pred             cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence            3567999999999877654432 388999999999998652       15999973

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.19  E-value=0.011  Score=56.48  Aligned_cols=37  Identities=24%  Similarity=0.681  Sum_probs=32.8

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHh
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR  244 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~  244 (274)
                      ....|.||++..........+||+|+||..|+...+.
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~  219 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT  219 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence            4558999999988778888999999999999999985

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=94.94  E-value=0.015  Score=54.40  Aligned_cols=51  Identities=24%  Similarity=0.606  Sum_probs=37.4

Q ss_pred             CcccccccccccccCCe-eEEeCCCCccChhhHHHHHh-cCCCCccccccccC
Q 024005          208 DELTCTVCLEQVNVGEI-VRSLPCLHQFHANCIDPWLR-QQGTCPVCKLRAGS  258 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~-v~~lpCgH~FH~~CI~~WL~-~~~tCPlCR~~i~~  258 (274)
                      +++.|+.|+|.+...++ ..-.|||-..|.-|...--+ -++.||-||....+
T Consensus        13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d   65 (480)
T COG5175          13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD   65 (480)
T ss_pred             ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence            45569999999987764 33466898888888665432 26789999987654

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.89  E-value=0.024  Score=50.85  Aligned_cols=52  Identities=15%  Similarity=0.245  Sum_probs=44.8

Q ss_pred             CcccccccccccccCCeeEEeC-CCCccChhhHHHHHhcCCCCccccccccCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      ....|++|.+.+.+.-.+..|. |||+|+.+|.++.++....||+|-.++.+.
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr  272 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR  272 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence            5678999999999887666665 999999999999999999999997776654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.86  E-value=0.014  Score=60.08  Aligned_cols=42  Identities=21%  Similarity=0.709  Sum_probs=34.1

Q ss_pred             cccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCcccccc
Q 024005          209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLR  255 (274)
Q Consensus       209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~  255 (274)
                      ..+|.+|--.+..+  .+...|||.||.+|+.   .....||.|+..
T Consensus       840 ~skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e  881 (933)
T KOG2114|consen  840 VSKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPE  881 (933)
T ss_pred             eeeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchh
Confidence            35899998888755  4567799999999998   456789999873

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=94.85  E-value=0.015  Score=40.35  Aligned_cols=47  Identities=28%  Similarity=0.487  Sum_probs=35.7

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      ....|..|...-..+   ..+||+|..+..|..-+  +-+.||.|-.++...
T Consensus         6 ~~~~~~~~~~~~~~~---~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~   52 (55)
T PF14447_consen    6 PEQPCVFCGFVGTKG---TVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFD   52 (55)
T ss_pred             cceeEEEcccccccc---ccccccceeeccccChh--hccCCCCCCCcccCC
Confidence            345677777765544   78999999999996654  677899998877653

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=94.81  E-value=0.012  Score=57.81  Aligned_cols=54  Identities=26%  Similarity=0.611  Sum_probs=41.3

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc-----CCCCccccccccCCCCCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-----QGTCPVCKLRAGSGWHET  263 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-----~~tCPlCR~~i~~~~~~~  263 (274)
                      .++..|.+|-+.-...   ....|.|.||.-||.++...     +-+||.|-..+.-..+++
T Consensus       534 k~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~  592 (791)
T KOG1002|consen  534 KGEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP  592 (791)
T ss_pred             cCceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence            4567899998885543   66779999999999998753     458999988776554443

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.69  E-value=0.01  Score=52.94  Aligned_cols=46  Identities=22%  Similarity=0.501  Sum_probs=34.0

Q ss_pred             cccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005          211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      -|.-|.---. ++....+.|+|+||..|...-  ....||+||+.+...
T Consensus         5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~i   50 (233)
T KOG4739|consen    5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRII   50 (233)
T ss_pred             EeccccccCC-CCceeeeechhhhhhhhcccC--Cccccccccceeeee
Confidence            4776665544 778888889999999997552  222899999986543

>PHA03096 p28-like protein; Provisional

Probab=94.67  E-value=0.015  Score=53.60  Aligned_cols=36  Identities=28%  Similarity=0.696  Sum_probs=28.1

Q ss_pred             ccccccccccccC----CeeEEeC-CCCccChhhHHHHHhc
Q 024005          210 LTCTVCLEQVNVG----EIVRSLP-CLHQFHANCIDPWLRQ  245 (274)
Q Consensus       210 ~~C~ICLe~~~~~----~~v~~lp-CgH~FH~~CI~~WL~~  245 (274)
                      ..|.||++.....    ..-..|+ |.|.||..||..|-..
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~  219 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTE  219 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHh
Confidence            5799999987643    2333576 9999999999999754

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=94.62  E-value=0.014  Score=38.46  Aligned_cols=41  Identities=29%  Similarity=0.824  Sum_probs=24.1

Q ss_pred             ccccccccccCCeeEEeCCCCccChhhHHHHHhcCC--CCccc
Q 024005          212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG--TCPVC  252 (274)
Q Consensus       212 C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~--tCPlC  252 (274)
                      |.+|-+-...|.......|+-.+|..|+..+++...  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            678888888774332234888999999999998766  79988

; PDB: 3NW0_A 2CT0_A.

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=94.29  E-value=0.032  Score=51.90  Aligned_cols=47  Identities=30%  Similarity=0.496  Sum_probs=37.7

Q ss_pred             CCcccccccccccccCCeeEEeC-CCCccChhhHHHHHhcCCCCccccccc
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRA  256 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~~~tCPlCR~~i  256 (274)
                      .+...|++|+....++   ..+. -|-+||..||.+.+...+.||+=-.++
T Consensus       298 ~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~  345 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA  345 (357)
T ss_pred             CccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence            3556899999998766   3333 699999999999999999999865544

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.11  E-value=0.024  Score=52.14  Aligned_cols=43  Identities=30%  Similarity=0.631  Sum_probs=35.1

Q ss_pred             cccccccccccccCCeeEEeC-CCCccChhhHHHHHh-cCCCCccccc
Q 024005          209 ELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLR-QQGTCPVCKL  254 (274)
Q Consensus       209 ~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~-~~~tCPlCR~  254 (274)
                      .+.|+.|--.+.++   ..+| |+|.||.+||..-|. ....||.|..
T Consensus       274 ~LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         274 SLKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             cccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            47999998887766   5667 899999999998764 5678999944

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=93.84  E-value=0.056  Score=45.46  Aligned_cols=33  Identities=30%  Similarity=0.833  Sum_probs=23.0

Q ss_pred             cccccccccccccCCeeEEeC------------CCCcc-ChhhHHHHHh
Q 024005          209 ELTCTVCLEQVNVGEIVRSLP------------CLHQF-HANCIDPWLR  244 (274)
Q Consensus       209 ~~~C~ICLe~~~~~~~v~~lp------------CgH~F-H~~CI~~WL~  244 (274)
                      +..|+||||--.+.   +.|-            |+..| |.+|+++.-+
T Consensus         2 d~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    2 DVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            45899999987654   3333            44444 8999999753

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.66  E-value=0.005  Score=58.36  Aligned_cols=51  Identities=18%  Similarity=0.510  Sum_probs=43.9

Q ss_pred             cccccccccccccC-CeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005          209 ELTCTVCLEQVNVG-EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       209 ~~~C~ICLe~~~~~-~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      ...|+||.+.++.. +.+..+-|||.+|..|+.+||.....||.|+..++..
T Consensus       196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~  247 (465)
T KOG0827|consen  196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN  247 (465)
T ss_pred             HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence            45799999999866 6666778999999999999999988999999887643

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.39  E-value=0.045  Score=50.28  Aligned_cols=47  Identities=30%  Similarity=0.667  Sum_probs=37.3

Q ss_pred             ccccccccccccCC---eeEEeCCCCccChhhHHHHHhcCC-CCccccccc
Q 024005          210 LTCTVCLEQVNVGE---IVRSLPCLHQFHANCIDPWLRQQG-TCPVCKLRA  256 (274)
Q Consensus       210 ~~C~ICLe~~~~~~---~v~~lpCgH~FH~~CI~~WL~~~~-tCPlCR~~i  256 (274)
                      ..|-||-++|...+   ..+.|.|||.+|..|+.+-+.... .||.||...
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            47999999998764   234567999999999987665543 699999985

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=92.83  E-value=0.14  Score=48.80  Aligned_cols=29  Identities=21%  Similarity=0.768  Sum_probs=21.7

Q ss_pred             CCCccChhhHHHHHhc-------------CCCCccccccccC
Q 024005          230 CLHQFHANCIDPWLRQ-------------QGTCPVCKLRAGS  258 (274)
Q Consensus       230 CgH~FH~~CI~~WL~~-------------~~tCPlCR~~i~~  258 (274)
                      |....|.+|+-+|+..             +.+||.||++++-
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi  352 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI  352 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence            3455688999999842             3479999998764

They are purported to be transmembrane protein-precursors but their function is unknown.

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=92.36  E-value=0.19  Score=34.80  Aligned_cols=44  Identities=25%  Similarity=0.650  Sum_probs=33.2

Q ss_pred             CcccccccccccccCCeeEEeC-CCCccChhhHHHHHhcCCCCcc--cccc
Q 024005          208 DELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPV--CKLR  255 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~~~tCPl--CR~~  255 (274)
                      ....|.+|-+.|..++.+..-| |+-.+|.+|.++    ...|-.  |..+
T Consensus         4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~   50 (54)
T PF14446_consen    4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG   50 (54)
T ss_pred             cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence            4458999999998777777767 999999999644    556655  5443

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=92.33  E-value=0.04  Score=59.26  Aligned_cols=44  Identities=30%  Similarity=0.795  Sum_probs=38.3

Q ss_pred             Ccccccccccccc-cCCeeEEeCCCCccChhhHHHHHhcCCCCccccc
Q 024005          208 DELTCTVCLEQVN-VGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKL  254 (274)
Q Consensus       208 e~~~C~ICLe~~~-~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~  254 (274)
                      +-..|.||++.+. .+   .+..|||.+|..|...|+..+..||.|+.
T Consensus      1152 ~~~~c~ic~dil~~~~---~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG---GIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred             cccchHHHHHHHHhcC---CeeeechhHhhhHHHHHHHHhccCcchhh
Confidence            3448999999988 44   56779999999999999999999999984

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.33  E-value=0.044  Score=36.83  Aligned_cols=44  Identities=23%  Similarity=0.563  Sum_probs=26.0

Q ss_pred             cccccccccccCCeeEEeCC-CCccChhhHHHHHhcCCCCccccccccCC
Q 024005          211 TCTVCLEQVNVGEIVRSLPC-LHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       211 ~C~ICLe~~~~~~~v~~lpC-gH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      .|--|+-..+     ....| .|+.|..|+...|.++..||+|+.+++.+
T Consensus         4 nCKsCWf~~k-----~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk   48 (50)
T PF03854_consen    4 NCKSCWFANK-----GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK   48 (50)
T ss_dssp             ---SS-S--S-----SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred             cChhhhhcCC-----CeeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence            4666665533     24567 58999999999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=92.28  E-value=0.078  Score=49.31  Aligned_cols=45  Identities=29%  Similarity=0.708  Sum_probs=37.2

Q ss_pred             CCcccccccccccccCCeeEEeCC--CCccChhhHHHHHhcCCCCccccccccC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPC--LHQFHANCIDPWLRQQGTCPVCKLRAGS  258 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpC--gH~FH~~CI~~WL~~~~tCPlCR~~i~~  258 (274)
                      .+...|+||.+.+..+    +..|  ||.-|..|-.   +....||.||.+++.
T Consensus        46 ~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~   92 (299)
T KOG3002|consen   46 LDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIGN   92 (299)
T ss_pred             hhhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCcccccccc
Confidence            4677999999999876    5667  8999999964   457889999999883

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=92.27  E-value=0.057  Score=49.52  Aligned_cols=45  Identities=27%  Similarity=0.658  Sum_probs=37.6

Q ss_pred             ccccccccccccCC-eeEEeCCCCccChhhHHHHHhcCCCCccccc
Q 024005          210 LTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLRQQGTCPVCKL  254 (274)
Q Consensus       210 ~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~  254 (274)
                      ..|+||.+.+.... .+..++|||.-|..|.......+-+||+|.+
T Consensus       159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            35999999876553 4567889999999999998887889999987

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=91.77  E-value=0.068  Score=54.90  Aligned_cols=46  Identities=22%  Similarity=0.561  Sum_probs=37.4

Q ss_pred             ccccccccccccCCeeEEeCCCCccChhhHHHHHhcC--CCCccccccccCC
Q 024005          210 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ--GTCPVCKLRAGSG  259 (274)
Q Consensus       210 ~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~--~tCPlCR~~i~~~  259 (274)
                      ..|.||++    .+.....+|+|.||.+|+.+-+...  ..||.||..+..+
T Consensus       455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~  502 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK  502 (674)
T ss_pred             cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence            68999999    3566888999999999999877653  3599999877654

>PF04641 Rtf2: Rtf2 RING-finger

Probab=91.68  E-value=0.2  Score=45.50  Aligned_cols=54  Identities=22%  Similarity=0.376  Sum_probs=41.8

Q ss_pred             CCcccccccccccccCC-eeEEeCCCCccChhhHHHHHhcCCCCccccccccCCCC
Q 024005          207 EDELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWH  261 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~  261 (274)
                      .....|+|....+.... -+...||||+|...+|.+- +....||+|-.++....-
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~Di  165 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEEDI  165 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCCE
Confidence            46779999999996443 4555689999999999996 335679999888775543

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.53  E-value=0.083  Score=54.96  Aligned_cols=36  Identities=25%  Similarity=0.576  Sum_probs=30.6

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHH
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWL  243 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL  243 (274)
                      +..+.|.+|...+.. ..-...||||.||++||.+-.
T Consensus       815 ep~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  815 EPQDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             cCccchHHhcchhhc-CcceeeeccchHHHHHHHHHH
Confidence            677899999988774 467789999999999998865

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=90.44  E-value=0.15  Score=52.41  Aligned_cols=40  Identities=30%  Similarity=0.695  Sum_probs=29.5

Q ss_pred             cccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCcc
Q 024005          211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPV  251 (274)
Q Consensus       211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPl  251 (274)
                      .|.||--.+. +....+..|+|+.|.+|+..|++....||.
T Consensus      1030 ~C~~C~l~V~-gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1030 QCAICHLAVR-GSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             eeeeEeeEee-ccchhhccccccccHHHHHHHHhcCCcCCC
Confidence            4555544433 333445679999999999999999999984

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=90.01  E-value=0.23  Score=40.66  Aligned_cols=52  Identities=23%  Similarity=0.389  Sum_probs=37.4

Q ss_pred             CcccccccccccccCCeeEEeC---CCCccChhhHHHHHhc---CCCCccccccccCCCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLP---CLHQFHANCIDPWLRQ---QGTCPVCKLRAGSGWH  261 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lp---CgH~FH~~CI~~WL~~---~~tCPlCR~~i~~~~~  261 (274)
                      ...+|.||.|.....  ...-|   ||-..|.-|-....+.   ...||+||..+.+...
T Consensus        79 ~lYeCnIC~etS~ee--~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~~  136 (140)
T PF05290_consen   79 KLYECNICKETSAEE--RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSSS  136 (140)
T ss_pred             CceeccCcccccchh--hcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccccc
Confidence            456899999987644  22223   8999999997774443   5689999998876543

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=89.75  E-value=0.17  Score=46.48  Aligned_cols=50  Identities=24%  Similarity=0.553  Sum_probs=36.6

Q ss_pred             cccccccccccccCCe-eEEeCCC-----CccChhhHHHHHh--cCCCCccccccccC
Q 024005          209 ELTCTVCLEQVNVGEI-VRSLPCL-----HQFHANCIDPWLR--QQGTCPVCKLRAGS  258 (274)
Q Consensus       209 ~~~C~ICLe~~~~~~~-v~~lpCg-----H~FH~~CI~~WL~--~~~tCPlCR~~i~~  258 (274)
                      +..|-||.++...... ....||.     +..|..|+..|+.  .+..|.+|......
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~  135 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN  135 (323)
T ss_pred             CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence            4689999997654321 3567763     5679999999997  56689999875543

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=89.05  E-value=0.22  Score=48.20  Aligned_cols=36  Identities=36%  Similarity=0.607  Sum_probs=31.7

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ  245 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~  245 (274)
                      +++.+|+||-.-|..+   .+|||+|..|..|...-+.+
T Consensus         2 eeelkc~vc~~f~~ep---iil~c~h~lc~~ca~~~~~~   37 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREP---IILPCSHNLCQACARNILVQ   37 (699)
T ss_pred             cccccCceehhhccCc---eEeecccHHHHHHHHhhccc
Confidence            5788999999999877   89999999999999877654

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.93  E-value=0.22  Score=43.93  Aligned_cols=40  Identities=33%  Similarity=0.701  Sum_probs=30.4

Q ss_pred             ccccccccccCCeeEEeCCCC-ccChhhHHHHHhcCCCCccccccccC
Q 024005          212 CTVCLEQVNVGEIVRSLPCLH-QFHANCIDPWLRQQGTCPVCKLRAGS  258 (274)
Q Consensus       212 C~ICLe~~~~~~~v~~lpCgH-~FH~~CI~~WL~~~~tCPlCR~~i~~  258 (274)
                      |-.|-+.   +..+..+||.| .+|..|=..    -.+||+|+.....
T Consensus       161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s  201 (207)
T KOG1100|consen  161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKTS  201 (207)
T ss_pred             ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhhc
Confidence            8899777   45688999988 578899543    4569999876654

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=87.61  E-value=0.22  Score=46.23  Aligned_cols=49  Identities=24%  Similarity=0.522  Sum_probs=32.9

Q ss_pred             cccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCCC
Q 024005          209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWH  261 (274)
Q Consensus       209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~  261 (274)
                      .-.|.-|=-.+..  --+.+||.|+||.+|...  ...+.||.|-.++....+
T Consensus        90 VHfCd~Cd~PI~I--YGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~VqrIeq  138 (389)
T KOG2932|consen   90 VHFCDRCDFPIAI--YGRMIPCKHVFCLECARS--DSDKICPLCDDRVQRIEQ  138 (389)
T ss_pred             eEeecccCCccee--eecccccchhhhhhhhhc--CccccCcCcccHHHHHHH
Confidence            4466666444331  225689999999999643  345689999877765433

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=86.85  E-value=0.44  Score=49.42  Aligned_cols=51  Identities=22%  Similarity=0.600  Sum_probs=37.6

Q ss_pred             CCcccccccccccccCCeeEEeCCC-----CccChhhHHHHHhcC--CCCccccccccC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCL-----HQFHANCIDPWLRQQ--GTCPVCKLRAGS  258 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCg-----H~FH~~CI~~WL~~~--~tCPlCR~~i~~  258 (274)
                      ++...|.||..+=..++++. =||+     .+.|.+|+.+|+.-.  ..|-+|+.++.=
T Consensus        10 ~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F   67 (1175)
T COG5183          10 EDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF   67 (1175)
T ss_pred             ccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence            45579999998876665543 4553     357999999999754  469999887653

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=85.88  E-value=0.44  Score=42.79  Aligned_cols=47  Identities=26%  Similarity=0.657  Sum_probs=35.2

Q ss_pred             Ccccccccccc-cccCCe-eEEeC-CCCccChhhHHHHHhcCC-CCc--cccc
Q 024005          208 DELTCTVCLEQ-VNVGEI-VRSLP-CLHQFHANCIDPWLRQQG-TCP--VCKL  254 (274)
Q Consensus       208 e~~~C~ICLe~-~~~~~~-v~~lp-CgH~FH~~CI~~WL~~~~-tCP--lCR~  254 (274)
                      .+..|+||..+ |..++. +.+-| |-|..|.+|+++-+.... .||  -|-+
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k   61 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK   61 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence            34589999876 445553 44456 999999999999987754 799  7854

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.57  E-value=0.66  Score=44.39  Aligned_cols=46  Identities=22%  Similarity=0.425  Sum_probs=39.0

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC---CCccc
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG---TCPVC  252 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~---tCPlC  252 (274)
                      .....|||=.+.-...++...|.|||+...+-|.+..+...   .||.|
T Consensus       332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYC  380 (394)
T KOG2817|consen  332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYC  380 (394)
T ss_pred             cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCC
Confidence            45678999999888888889999999999999999765433   59999

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=84.97  E-value=0.75  Score=42.34  Aligned_cols=46  Identities=20%  Similarity=0.509  Sum_probs=33.4

Q ss_pred             ccccccccc-ccCCe-eEEeCCCCccChhhHHHHHhcC-CCCccccccc
Q 024005          211 TCTVCLEQV-NVGEI-VRSLPCLHQFHANCIDPWLRQQ-GTCPVCKLRA  256 (274)
Q Consensus       211 ~C~ICLe~~-~~~~~-v~~lpCgH~FH~~CI~~WL~~~-~tCPlCR~~i  256 (274)
                      .|++|..+. ..++. ..+-+|+|..|.+|++.-+..+ ..||.|-..+
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iL   50 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVIL   50 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchh
Confidence            599998663 34443 2233699999999999987654 5799996644

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.64  E-value=0.46  Score=43.82  Aligned_cols=30  Identities=17%  Similarity=0.500  Sum_probs=23.2

Q ss_pred             CCCccChhhHHHHHh-------------cCCCCccccccccCC
Q 024005          230 CLHQFHANCIDPWLR-------------QQGTCPVCKLRAGSG  259 (274)
Q Consensus       230 CgH~FH~~CI~~WL~-------------~~~tCPlCR~~i~~~  259 (274)
                      |....|.+|+.+|+.             ++.+||.||++++-.
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~  367 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR  367 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence            456788999999973             355899999987643

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.47  E-value=0.36  Score=46.46  Aligned_cols=38  Identities=21%  Similarity=0.640  Sum_probs=28.4

Q ss_pred             Ccccccccc-cccccCCeeEEeCCCCccChhhHHHHHhc
Q 024005          208 DELTCTVCL-EQVNVGEIVRSLPCLHQFHANCIDPWLRQ  245 (274)
Q Consensus       208 e~~~C~ICL-e~~~~~~~v~~lpCgH~FH~~CI~~WL~~  245 (274)
                      ...+|.||. +.....+......|+|.||.+|+.+.+..
T Consensus       145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev  183 (384)
T KOG1812|consen  145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV  183 (384)
T ss_pred             ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence            356899999 44444344445669999999999998864

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.06  E-value=0.27  Score=49.67  Aligned_cols=45  Identities=29%  Similarity=0.540  Sum_probs=32.9

Q ss_pred             CcccccccccccccCC-eeEEeCCCCccChhhHHHHHhcCCCCcccccc
Q 024005          208 DELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLRQQGTCPVCKLR  255 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~  255 (274)
                      +...|.||+..|.... .-+.+-|||..|..|+..-  -+.+|| |++.
T Consensus        10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~D   55 (861)
T KOG3161|consen   10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKRD   55 (861)
T ss_pred             HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCcc
Confidence            5568999998887653 2234559999999998764  356788 6554

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=83.09  E-value=0.67  Score=47.99  Aligned_cols=52  Identities=19%  Similarity=0.301  Sum_probs=37.1

Q ss_pred             CCcccccccccccccC-CeeEEeC---CCCccChhhHHHHHhc------CCCCccccccccC
Q 024005          207 EDELTCTVCLEQVNVG-EIVRSLP---CLHQFHANCIDPWLRQ------QGTCPVCKLRAGS  258 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~-~~v~~lp---CgH~FH~~CI~~WL~~------~~tCPlCR~~i~~  258 (274)
                      -+..+|.||.-++..+ +..-.+|   |+|.||..||..|+.+      +..|+.|+..+..
T Consensus        94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s  155 (1134)
T KOG0825|consen   94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS  155 (1134)
T ss_pred             ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence            3556778887777652 2223444   9999999999999865      3468999887654

>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]

Probab=82.45  E-value=0.43  Score=48.06  Aligned_cols=43  Identities=26%  Similarity=0.740  Sum_probs=27.8

Q ss_pred             Ccccccccccc-----cccCCeeEEeCCCCccChhhHHHHHhcCCCCcccc
Q 024005          208 DELTCTVCLEQ-----VNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK  253 (274)
Q Consensus       208 e~~~C~ICLe~-----~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR  253 (274)
                      ....|.||...     |......++..|+++||..|...   ++..||.|-
T Consensus       510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~  557 (580)
T KOG1829|consen  510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE  557 (580)
T ss_pred             CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence            34578888432     22223345566999999999543   455699993

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.87  E-value=0.68  Score=41.98  Aligned_cols=50  Identities=24%  Similarity=0.692  Sum_probs=33.5

Q ss_pred             CCcccccccccccccCCe-eEEeCC-----CCccChhhHHHHHhcCC--------CCccccccc
Q 024005          207 EDELTCTVCLEQVNVGEI-VRSLPC-----LHQFHANCIDPWLRQQG--------TCPVCKLRA  256 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~-v~~lpC-----gH~FH~~CI~~WL~~~~--------tCPlCR~~i  256 (274)
                      +.+..|=||+..=+.... .-.-||     .|-.|..|+..|+..+.        +||-|+...
T Consensus        18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY   81 (293)
T KOG3053|consen   18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY   81 (293)
T ss_pred             ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence            466789999987443211 113455     36789999999995322        599998754

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.18  E-value=1.2  Score=44.76  Aligned_cols=51  Identities=29%  Similarity=0.709  Sum_probs=40.6

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCCCCCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETR  264 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~~~~  264 (274)
                      +....|.||+++.    ..+..+|.   |..|+.+|+..+..||+|+.....+.....
T Consensus       477 ~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~~~  527 (543)
T KOG0802|consen  477 EPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDFLSK  527 (543)
T ss_pred             cccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccccCc
Confidence            4567899999998    23667788   899999999999999999887765544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	274
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		2e-09
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		1e-08
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		3e-08
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		3e-08
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		1e-07
1chc_A	68	Structure Of The C3hc4 Domain By 1h-Nuclear Magneti		3e-05
2ecn_A	70	Solution Structure Of The Ring Domain Of The Human		5e-05
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		2e-04

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 200 SVGNLKTEDE----LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
           S G+  TE+     L C VC E   +GE VR LPC H FH +CI PWL Q  +CPVC+
Sbjct: 2   SSGSSGTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 59

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKL 254
           CT+CL  +  GE VR LPC+H FH  C+D WL     CP+C++
Sbjct: 17  CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 59

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 189 PAEQKKLETSISVGNLKTED------ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW 242
           PA ++ ++    +  L TED      E+ C +C  +   G++   LPC H FH  C+  W
Sbjct: 16  PASKESIDALPEI--LVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIW 73
Query: 243 LRQQGTCPVCK 253
           L++ GTCPVC+
Sbjct: 74  LQKSGTCPVCR 84

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 203 NLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 257
           N    ++  C VC+      +++R LPC H+FHA C+D WL+   TCP+C+  +G
Sbjct: 17  NNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 207 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKL 254
           +D + C VCL ++  GE  R LP C H FHA C+D WL    TCP+C+L
Sbjct: 3   DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRL 51

>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic Resonance Spectroscopy; A New Structural Class Of Zinc- Finger Length = 68

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETRQVEMDAS 271
           C +CLE  +      +LPCLH F   CI  W+RQ  TCP+CK+   S  H    +E D+ 
Sbjct: 8   CPICLE--DPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVH---TIESDSE 62
Query: 272 Y 272
           +
Sbjct: 63  F 63

>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring Finger Protein 141 Length = 70

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 197 TSISVGNLKT-EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLR 255
           +S S G +K   DE  C +C++    G     LPC H F   CID W  +   CP+C+L+
Sbjct: 2   SSGSSGRVKQLTDEEECCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQ 57

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKL 254
           C VCLE     + +   PC H FH  C+  WL  +  CP+C +
Sbjct: 18  CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNM 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	274
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	2e-24
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	3e-24
2ect_A	78	Ring finger protein 126; metal binding protein, st	3e-24
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	9e-24
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	1e-23
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	2e-21
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	2e-19
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	2e-17
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	6e-17
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	7e-16
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	2e-14
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	8e-14
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	9e-14
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	1e-10
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	6e-10
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	1e-09
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	2e-09
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	2e-09
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	2e-09
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	2e-09
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	4e-09
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	6e-07
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	1e-08
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	1e-08
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	3e-08
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	5e-08
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	1e-07
1z6u_A	150	NP95-like ring finger protein isoform B; structura	1e-07
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	3e-07
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	4e-07
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	6e-07
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	2e-06
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	4e-06
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	4e-06
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	6e-06
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	6e-06
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	9e-06
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	1e-05
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	1e-05
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	2e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	2e-05
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	3e-05
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	3e-05
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	4e-05
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	5e-05
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	6e-05
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	7e-05
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	7e-05
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	8e-05
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	9e-05
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	1e-04
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	2e-04
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	2e-04
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	2e-04

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 92.4 bits (230), Expect = 2e-24
 Identities = 22/47 (46%), Positives = 29/47 (61%)

Query: 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
           + E  CT+CL  +  GE VR LPC+H FH  C+D WL     CP+C+
Sbjct: 12  DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICR 58

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 92.4 bits (230), Expect = 3e-24
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 189 PAEQKKLET----SISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR 244
           PA ++ ++      ++  +     E+ C +C  +   G++   LPC H FH  C+  WL+
Sbjct: 16  PASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ 75

Query: 245 QQGTCPVCK 253
           + GTCPVC+
Sbjct: 76  KSGTCPVCR 84

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 92.1 bits (229), Expect = 3e-24
 Identities = 25/48 (52%), Positives = 29/48 (60%)

Query: 206 TEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
               L C VC E   +GE VR LPC H FH +CI PWL Q  +CPVC+
Sbjct: 12  VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 59

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 90.8 bits (226), Expect = 9e-24
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 31/97 (31%)

Query: 157 SEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEQKKLETSISVGNLKTEDELTCTVCL 216
           S      LP +++  +  QS                               ++  C VC+
Sbjct: 2   SSGSSGQLPSYRFNPNNHQS-------------------------------EQTLCVVCM 30

Query: 217 EQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
                 +++R LPC H+FHA C+D WL+   TCP+C+
Sbjct: 31  CDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 90.2 bits (224), Expect = 1e-23
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 11/70 (15%)

Query: 184 GSSSSPAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWL 243
           GSS S  + K+L                C VCLE     + +   PC H FH  C+  WL
Sbjct: 1   GSSGSSGKVKELN-----------LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWL 49

Query: 244 RQQGTCPVCK 253
             +  CP+C 
Sbjct: 50  EVRKVCPLCN 59

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 84.8 bits (210), Expect = 2e-21
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 15/70 (21%)

Query: 184 GSSSSPAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWL 243
           GSS S    K+L            DE  C +C++    G     LPC H F   CID W 
Sbjct: 1   GSSGSSGRVKQLT-----------DEEECCICMD----GRADLILPCAHSFCQKCIDKWS 45

Query: 244 RQQGTCPVCK 253
            +   CP+C+
Sbjct: 46  DRHRNCPICR 55

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 78.4 bits (194), Expect = 2e-19
 Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 207 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCK 253
           +D + C VCL ++  GE  R LP C H FHA C+D WL    TCP+C+
Sbjct: 3   DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 73.6 bits (181), Expect = 2e-17
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 204 LKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHET 263
           + T  E  C +CLE  +      +LPCLH F   CI  W+RQ  TCP+CK+   S  H  
Sbjct: 1   MATVAE-RCPICLE--DPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHTI 57

Query: 264 RQVEMDASYMV 274
                    ++
Sbjct: 58  ESDSEFGDQLI 68

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 71.9 bits (177), Expect = 6e-17
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 212 CTVCLEQVNVG-EIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
           C +CLE ++    +   LPC H  H  C +  L++   CP+C 
Sbjct: 8   CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCS 50

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 69.6 bits (170), Expect = 7e-16
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 197 TSISVGNLKTEDELTCTVCLEQ----VNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVC 252
           +  S   L+    ++C +C++     V  G ++ S  C H F + C+   L+   TCP C
Sbjct: 3   SGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTC 62

Query: 253 K 253
           +
Sbjct: 63  R 63

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 66.1 bits (161), Expect = 2e-14
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 211 TCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVC 252
            C  C  +    + V     C H FH  C+  W++Q   CP+C
Sbjct: 28  ACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLC 70

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 64.1 bits (156), Expect = 8e-14
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 204 LKTEDELTCTVCLEQ----VNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
           L+    ++C +C++     V  G ++ S  C H F + C+   L+   TCP C+
Sbjct: 5   LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 58

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 63.6 bits (155), Expect = 9e-14
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 209 ELTCTVCLEQ----VNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
            ++C +C++     V  G ++ S  C H F + C+   L+   TCP C+
Sbjct: 3   MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 51

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETRQV 266
              + C++C   +   +      CLH F  +CI         CP C +      H+T+ +
Sbjct: 13  TPYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV----HQTQPL 66

Query: 267 EMDAS 271
              +S
Sbjct: 67  SGPSS 71

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 55.8 bits (134), Expect = 6e-10
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 190 AEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTC 249
             Q + E  +S  N   E+EL C +C E     E V +L C H F + CI+ W++++  C
Sbjct: 45  KMQAQKEEVLSHMNDVLENELQCIICSEYFI--EAV-TLNCAHSFCSYCINEWMKRKIEC 101

Query: 250 PVCK 253
           P+C+
Sbjct: 102 PICR 105

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 53.4 bits (128), Expect = 1e-09
 Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 11/67 (16%)

Query: 188 SPAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWL-RQQ 246
           S  +++ +E+          +   C +C+E++   +      C      +CI  WL  Q+
Sbjct: 9   SHMDEQSVES--------IAEVFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQR 58

Query: 247 GTCPVCK 253
             CP C+
Sbjct: 59  AQCPHCR 65

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 53.3 bits (128), Expect = 2e-09
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 196 ETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
            T I +  L     L C +C       +    + CLH F   CI  +L     CP+C 
Sbjct: 4   TTRIKITEL--NPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICD 57

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 53.3 bits (127), Expect = 2e-09
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 20/105 (19%)

Query: 167 HKYKVSGSQSGASSMQLGSSSSPAEQKKLE----TSISVGNLKTEDELTCTVCLEQVNV- 221
           H +     ++         ++S A +K+ E     ++++       +  C +C   +   
Sbjct: 3   HHHHHVDEENLYFQGGGRGTNSGAGKKRFEVKKWNAVALWAWDIVVD-NCAICRNHIMDL 61

Query: 222 --------------GEIVRSLPCLHQFHANCIDPWLRQQGTCPVC 252
                            V    C H FH +CI  WL+ +  CP+ 
Sbjct: 62  CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD 106

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 4/49 (8%)

Query: 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG--TCPVCK 253
           +    C +C   +  G       C  + H  C+  + +      CP C 
Sbjct: 13  DAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCN 59

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 52.9 bits (126), Expect = 2e-09
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 20/87 (22%)

Query: 185 SSSSPAEQKKLE----TSISVGNLKTEDELTCTVCLEQVNV---------------GEIV 225
            ++S A +K+ E     ++++       +  C +C   +                    V
Sbjct: 10  GTNSGAGKKRFEVKKWNAVALWAWDIVVD-NCAICRNHIMDLCIECQANQASATSEECTV 68

Query: 226 RSLPCLHQFHANCIDPWLRQQGTCPVC 252
               C H FH +CI  WL+ +  CP+ 
Sbjct: 69  AWGVCNHAFHFHCISRWLKTRQVCPLD 95

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 52.9 bits (126), Expect = 4e-09
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 207 EDELTCTVCLEQVNVGEIVR----SLPCLHQFHANCIDPWLRQQGTCPVCK 253
              ++C +C++  +          S  C H F + C+   L+   TCP C+
Sbjct: 5   SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 55

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 46.7 bits (110), Expect = 6e-07
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 185 SSSSPAEQKKLETSISVGNLKTEDELTCTVCLEQVN----VGEIVRSLPCLHQFHANCID 240
           +++ P  +KK+              ++C +C++  +     G ++ S  C H F + C+ 
Sbjct: 48  ANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR 107

Query: 241 PWLRQQGTCPVCK 253
             L+   TCP C+
Sbjct: 108 DSLKNANTCPTCR 120

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 204 LKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
             +     C +CL+       V  LPC H F   C+         C +C+
Sbjct: 10  APSLTVPECAICLQTCV--HPVS-LPCKHVFCYLCVKGASWLGKRCALCR 56

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 51.4 bits (122), Expect = 1e-08
 Identities = 20/88 (22%), Positives = 27/88 (30%), Gaps = 22/88 (25%)

Query: 188 SPAEQKKLETSIS--VGNLKTEDELTCTVCLEQVNVGE---------------IVRSLPC 230
           S     + E  I      LK   E  C +C+E++ V                 + R   C
Sbjct: 2   SSGSSGEPEQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKC 61

Query: 231 LHQFHANCIDPWLRQQG-----TCPVCK 253
            H FH  C+              CP CK
Sbjct: 62  SHAFHLLCLLAMYCNGNKDGSLQCPSCK 89

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 53.2 bits (127), Expect = 3e-08
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 8/66 (12%)

Query: 189 PAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG- 247
              Q++ E               C +C E       V+  PC H    +C+  W   +G 
Sbjct: 316 KVTQEQYELYCE----MGSTFQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQ 368

Query: 248 TCPVCK 253
            CP C+
Sbjct: 369 GCPFCR 374

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 49.6 bits (118), Expect = 5e-08
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 185 SSSSPAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR 244
             +S  ++    +   +   K E+   C  C E   +     +  C H    +C+D   R
Sbjct: 28  VLASLKDRPASGSPFQLFLSKVEETFQCICCQE---LVFRPITTVCQHNVCKDCLDRSFR 84

Query: 245 QQG-TCPVCK 253
            Q  +CP C+
Sbjct: 85  AQVFSCPACR 94

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 3/58 (5%)

Query: 196 ETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
            +  S G+ + E    C +C +      +     C H F  +C     R    C +C 
Sbjct: 2   SSGSSGGSEEEEIPFRCFICRQAFQNPVV---TKCRHYFCESCALEHFRATPRCYICD 56

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 48.9 bits (116), Expect = 1e-07
 Identities = 19/120 (15%), Positives = 34/120 (28%), Gaps = 15/120 (12%)

Query: 143 RALDADNVPTAASMSEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAE---QKKLETSI 199
               +  +    S S  ++         +   Q       L       +    + L   +
Sbjct: 7   HHHHSSGLVPRGSPSASKVYKASDSAEAIEAFQLTPQQQHLIREDCQNQKLWDEVLSHLV 66

Query: 200 SVGNL--KTEDELTCTVCLEQVNVGEIVR---SLPCLHQFHANCIDPWLRQQG-TCPVCK 253
              N   K E    C  C E      +V    +  C H    +C+    + Q  +CP C+
Sbjct: 67  EGPNFLKKLEQSFMCVCCQE------LVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACR 120

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 205 KTEDELTCTVCLEQVNVGEIV-RSLPCLHQFHANCIDPWLRQQG---TCPVCK 253
              + L C +C+E     ++  + L C H     C++  L        CP C 
Sbjct: 11  ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCS 63

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 46.7 bits (111), Expect = 4e-07
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 187 SSPAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ 246
            S AE +       +  +  +D L C +C E  N    +    C H + + CI  +L  +
Sbjct: 2   DSLAESRWPPGLAVMKTI--DDLLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSYK 57

Query: 247 GTCPVCK 253
             CP C 
Sbjct: 58  TQCPTCC 64

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 44.8 bits (106), Expect = 6e-07
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 4/48 (8%)

Query: 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG-TCPVCK 253
           ED+  C  C   +          C H+F  +C+   L      C  C+
Sbjct: 13  EDKYKCEKCHLVLC--SPK-QTECGHRFCESCMAALLSSSSPKCTACQ 57

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 196 ETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
            +  ++  L  E  L C+ C   +   E V    C H F +NC+   +     CPVC 
Sbjct: 11  HSRAALDRL--EKLLRCSRCTNILR--EPVCLGGCEHIFCSNCVSDCIGTG--CPVCY 62

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 45.0 bits (106), Expect = 4e-06
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 179 SSMQLGSSSSPAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANC 238
           S  +L  +   A    LE  +S  +L    EL C +CL+ +     + +  CLH+F A+C
Sbjct: 26  SLYELQRTPQEAITDGLEIVVSPRSL--HSELMCPICLDMLK--NTMTTKECLHRFCADC 81

Query: 239 IDPWLRQQG-TCPVCK 253
           I   LR     CP C+
Sbjct: 82  IITALRSGNKECPTCR 97

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 43.7 bits (103), Expect = 4e-06
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 10/60 (16%)

Query: 204 LKTEDELTCTVCLEQVNVGEIVR---SLPCLHQFHANCIDPWLRQQG-TCPVCKLRAGSG 259
           + +  E  C +C+E      I+    +LPC H     C    + +    CP C+ R  S 
Sbjct: 10  IPSLSECQCGICME------ILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSW 63

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 42.4 bits (100), Expect = 6e-06
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 23/76 (30%)

Query: 184 GSSSSPAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVR---SLP-CLHQFHANCI 239
           GSS S  E   +            DEL C +C       +I+     +P C + +   CI
Sbjct: 1   GSSGSSGEDDPIP-----------DELLCLICK------DIMTDAVVIPCCGNSYCDECI 43

Query: 240 DPWLRQQG--TCPVCK 253
              L +    TCP C 
Sbjct: 44  RTALLESDEHTCPTCH 59

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 14/68 (20%)

Query: 192 QKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVR---SLPCLHQFHANCIDPWLRQQG- 247
            +  E    +  +  +  L C +CLE      +++   S  C H F   C+   L Q+  
Sbjct: 6   LRVEEVQNVINAM--QKILECPICLE------LIKEPVSTKCDHIFCKFCMLKLLNQKKG 57

Query: 248 --TCPVCK 253
              CP+CK
Sbjct: 58  PSQCPLCK 65

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 45.6 bits (107), Expect = 9e-06
 Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 16/77 (20%)

Query: 193 KKLETSISVGNLKTEDELTCTVCLEQVNVGE-----IVRSLPCLHQFHANCIDPWLRQ-- 245
               +     + +  +EL C +C      G         +  C+ + HA C++ W +   
Sbjct: 292 MPDWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLM 351

Query: 246 ---------QGTCPVCK 253
                     G CP CK
Sbjct: 352 DGKTFLEVSFGQCPFCK 368

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 207 EDELTCTVCLEQVNVGEI-VRSLPCLHQFHANCIDPWLRQQ-GTCPVCK 253
           ED + C +C+E + + +I      C +Q    C       + G CP C+
Sbjct: 9   EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACR 57

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 6/46 (13%)

Query: 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
             L C  C  +       + LPCLH   + C++        CP+C+
Sbjct: 5   QFLRCQQCQAEAKC---PKLLPCLHTLCSGCLE---ASGMQCPICQ 44

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 19/77 (24%)

Query: 184 GSSSSPAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPC-----LHQFHANC 238
           GSS S               +    +  C +C  + +    + + PC     LH  H  C
Sbjct: 1   GSSGSSGTS-----------ITPSSQDICRICHCEGDDESPLIT-PCHCTGSLHFVHQAC 48

Query: 239 IDPWLRQQG--TCPVCK 253
           +  W++      C +CK
Sbjct: 49  LQQWIKSSDTRCCELCK 65

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 44.0 bits (103), Expect = 2e-05
 Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 4/49 (8%)

Query: 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG--TCPVCK 253
           +    C +C   +  G       C  + H  C+  + +      CP C 
Sbjct: 178 DAVKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCN 224

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 14/54 (25%)

Query: 207 EDELTCTVCLEQ----VNVGEIVRSLPCLHQFHANCIDPWLRQQGT---CPVCK 253
           ++E+ C +CL+     V       ++ C H F   CI            CP+CK
Sbjct: 18  QEEVICPICLDILQKPV-------TIDCGHNFCLKCITQIGETSCGFFKCPLCK 64

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG-TCPVCK 253
           E +  C +CL            PC H+F   CI   +R  G  CPV  
Sbjct: 16  ESKYECPICLM---ALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDN 60

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 12/54 (22%)

Query: 206 TEDELTCTVCLEQVNVGEIVR---SLP-CLHQFHANCIDPWLRQQG--TCPVCK 253
             DEL C +C       +I+     +P C + +   CI   L +    TCP C 
Sbjct: 10  IPDELLCLICK------DIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCH 57

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 41.0 bits (96), Expect = 5e-05
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 10/51 (19%)

Query: 207 EDELTCTVCLEQVNVGEIVR---SLPCLHQFHANCIDPWLRQQG-TCPVCK 253
           E +  C +CL        +R     PC H+F   CI   +R  G  CPV  
Sbjct: 16  ESKYECPICLM------ALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDN 60

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 40.2 bits (94), Expect = 6e-05
 Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 8/55 (14%)

Query: 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ--------GTCPVCK 253
                C +CL +  V ++     C   F   C+  ++            +CP   
Sbjct: 3   SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 16/57 (28%)

Query: 207 EDELTCTVCLEQVNVGEIVR---SLPCLHQFHANCIDPWLRQQGT-------CPVCK 253
           ++E+TC +CL      E++    SL C H     CI    ++  T       CPVC 
Sbjct: 10  QEEVTCPICL------ELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG 60

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 38.8 bits (91), Expect = 7e-05
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 14/53 (26%)

Query: 207 EDELTCTVCLEQ----VNVGEIVRSLPCLHQFHANCIDPWLRQQGT---CPVC 252
           + E +C+VCLE     V        + C H F   CI  W         CPVC
Sbjct: 13  QVEASCSVCLEYLKEPV-------IIECGHNFCKACITRWWEDLERDFPCPVC 58

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 40.3 bits (94), Expect = 8e-05
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG-TCPVCKLR 255
              ++C +C   +   + V    C H F   CI   L+  G  CP C+  
Sbjct: 21  VKSISCQICEHILA--DPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYP 67

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 38.8 bits (90), Expect = 9e-05
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 208 DELTCTVCLEQVNVGEIVRSL--PCLHQFHANCIDPWL-RQQGTCPVCK 253
           D+  C  C         ++ +   C H    +C+D    R  G CP C 
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECG 50

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 30/84 (35%)

Query: 176 SGASSMQLGSSSSPAEQKKLETSISVGNLKTEDELTCTVCLEQ----VNVGEIVRSLPCL 231
           SG+S M   +S                  K ++E+ C +CL+     V       ++ C 
Sbjct: 3   SGSSGM---ASGQFVN-------------KLQEEVICPICLDILQKPV-------TIDCG 39

Query: 232 HQFHANCI-DPWLRQQGT--CPVC 252
           H F   CI        G   CP+C
Sbjct: 40  HNFCLKCITQIGETSCGFFKCPLC 63

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 15/56 (26%)

Query: 207 EDELTCTVCLEQVNVGEIVR---SLPCLHQFHANCIDPWLRQQGT------CPVCK 253
           ++E+TC +CL      E+++   S  C H F   CI               CPVC+
Sbjct: 17  KEEVTCPICL------ELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCR 66

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 15/56 (26%)

Query: 207 EDELTCTVCLEQVNVGEIVR---SLPCLHQFHANCIDPWLRQQGT------CPVCK 253
           ++E+TC +CL      E++    SL C H F   C+    ++         CPVC+
Sbjct: 17  KEEVTCPICL------ELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 66

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Length = 60

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 10/54 (18%)

Query: 207 EDELTCTVCLEQVNVGEIVRSLPC-----LHQFHANCIDPWLRQQG--TCPVCK 253
           ED   C +C E+       R   C     L   H +C+  WL       C +C 
Sbjct: 4   EDVPVCWICNEE---LGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICG 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.68
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.61
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.54
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.52
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.52
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.51
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.48
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.42
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.42
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.41
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.41
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.4
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.36
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.35
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.34
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.34
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.32
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.3
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.29
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.28
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.28
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.27
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.27
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.25
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.24
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.22
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.2
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.2
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.18
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.18
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.17
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.17
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.16
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.16
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.15
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.15
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.13
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.13
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.08
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.07
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.07
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.06
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.03
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.03
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.02
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.99
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.98
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.97
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.96
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.96
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.93
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.91
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.9
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.9
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.86
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.84
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.77
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.74
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.72
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.71
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.71
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.71
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.62
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.59
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.53
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.52
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.47
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.41
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.4
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.92
3nw0_A	238	Non-structural maintenance of chromosomes element	97.77
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	95.86
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	95.37
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	93.67
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	90.6
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	88.72
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	88.54
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	86.52
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	86.13
1xwh_A	66	Autoimmune regulator; PHD domain, Zn binding domai	85.0
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	84.41
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	84.25
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	83.82
2puy_A	60	PHD finger protein 21A; PHD finger, histone CODE,	83.37
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	82.93
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	82.74
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	81.8
1weu_A	91	Inhibitor of growth family, member 4; structural g	81.47
2d8v_A	67	Zinc finger FYVE domain-containing protein 19; zfy	81.06

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.68  E-value=4.8e-17  Score=123.50  Aligned_cols=78  Identities=31%  Similarity=0.703  Sum_probs=65.9

Q ss_pred             CCCCCCCHHHHhhCCCeeeeccCCCCCCCcccCCCCCChhHhhhhhhccccCCCCCCCcccccccccccccCCeeEEeCC
Q 024005          151 PTAASMSEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPC  230 (274)
Q Consensus       151 ~~~~~ls~e~I~~Lp~~~~~~~~~~~~~s~~~~~sss~~~~~~~~~~~~~~~~~~~~e~~~C~ICLe~~~~~~~v~~lpC  230 (274)
                      ....+++++.|+.||..++.....                              ..+++..|+||++.+..++.+..+||
T Consensus        12 ~~~~~~s~~~i~~lp~~~~~~~~~------------------------------~~~~~~~C~IC~~~~~~~~~~~~l~C   61 (91)
T 2l0b_A           12 VANPPASKESIDALPEILVTEDHG------------------------------AVGQEMCCPICCSEYVKGDVATELPC   61 (91)
T ss_dssp             SCCCCCCHHHHHTSCEEECCTTCS------------------------------SSSSCSEETTTTEECCTTCEEEEETT
T ss_pred             cCCCCCCHHHHHhCCCeeeccccc------------------------------ccCCCCCCcccChhhcCCCcEEecCC
Confidence            455689999999999887754321                              12356689999999999888999999


Q ss_pred             CCccChhhHHHHHhcCCCCccccccccC
Q 024005          231 LHQFHANCIDPWLRQQGTCPVCKLRAGS  258 (274)
Q Consensus       231 gH~FH~~CI~~WL~~~~tCPlCR~~i~~  258 (274)
                      +|.||..||.+|++.+.+||+||..+..
T Consensus        62 ~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           62 HHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             TEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            9999999999999999999999998865

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=1.4e-16  Score=116.21  Aligned_cols=53  Identities=38%  Similarity=1.050  Sum_probs=48.7

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      +++..|+||++.+..++.+..+||+|.||..||.+|++.+.+||+||+.+...
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            35668999999999999999999999999999999999999999999988764

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.54  E-value=6.5e-15  Score=105.43  Aligned_cols=54  Identities=41%  Similarity=0.992  Sum_probs=49.0

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW  260 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~  260 (274)
                      +++..|+||++.+..++.+..++|+|.||..||.+|++.+.+||+||..+....
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL   65 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred             CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence            456789999999988888899999999999999999999999999999987654

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.2e-14  Score=105.36  Aligned_cols=55  Identities=29%  Similarity=0.678  Sum_probs=49.5

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWH  261 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~  261 (274)
                      +++..|+||++.+..++.+..++|+|.||..||.+|++.+.+||+||+.+.....
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~   67 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ   67 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred             CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence            4567899999999988888899999999999999999999999999999876543

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.52  E-value=1.4e-14  Score=106.22  Aligned_cols=56  Identities=45%  Similarity=0.945  Sum_probs=50.1

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCCCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHE  262 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~~  262 (274)
                      .+...|+||++.+..++.+..++|+|.||..||.+|++.+.+||+||..+......
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   68 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA   68 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence            45679999999999888888999999999999999999999999999998765443

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.51  E-value=5.7e-15  Score=101.01  Aligned_cols=50  Identities=48%  Similarity=1.077  Sum_probs=45.9

Q ss_pred             CcccccccccccccCCeeEEeC-CCCccChhhHHHHHhcCCCCcccccccc
Q 024005          208 DELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRAG  257 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~~~tCPlCR~~i~  257 (274)
                      ++..|+||++.+..++.+..++ |+|.||..||.+|++.+.+||+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            5568999999999988888898 9999999999999999999999998764

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.48  E-value=2.5e-14  Score=112.24  Aligned_cols=62  Identities=27%  Similarity=0.520  Sum_probs=49.4

Q ss_pred             CcccccccccccccCC---------------eeEEeCCCCccChhhHHHHH-----hcCCCCccccccccCCCCCCCCcc
Q 024005          208 DELTCTVCLEQVNVGE---------------IVRSLPCLHQFHANCIDPWL-----RQQGTCPVCKLRAGSGWHETRQVE  267 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~---------------~v~~lpCgH~FH~~CI~~WL-----~~~~tCPlCR~~i~~~~~~~~~~~  267 (274)
                      .+..|+||++.|..+.               .+..++|+|.||..||.+|+     +.+.+||+||..+..+..+...+.
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g~  103 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGK  103 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCCe
Confidence            4468999999996543               34478899999999999999     456799999999988776666555


Q ss_pred             cc
Q 024005          268 MD  269 (274)
Q Consensus       268 ~~  269 (274)
                      +.
T Consensus       104 m~  105 (114)
T 1v87_A          104 ME  105 (114)
T ss_dssp             CC
T ss_pred             EE
Confidence            44

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=7.3e-14  Score=103.69  Aligned_cols=51  Identities=31%  Similarity=0.686  Sum_probs=41.5

Q ss_pred             Cccccccccccccc-----------CCeeEEeC-CCCccChhhHHHHHhcCCCCccccccccC
Q 024005          208 DELTCTVCLEQVNV-----------GEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRAGS  258 (274)
Q Consensus       208 e~~~C~ICLe~~~~-----------~~~v~~lp-CgH~FH~~CI~~WL~~~~tCPlCR~~i~~  258 (274)
                      ++..|+||++.+..           ++.+..++ |+|.||..||.+||+++.+||+||+++..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence            45578888887753           44456665 99999999999999999999999998754

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.42  E-value=9.4e-14  Score=94.77  Aligned_cols=50  Identities=28%  Similarity=0.749  Sum_probs=43.6

Q ss_pred             CcccccccccccccC-CeeEEeCCCCccChhhHHHHHhcCCCCcccccccc
Q 024005          208 DELTCTVCLEQVNVG-EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG  257 (274)
Q Consensus       208 e~~~C~ICLe~~~~~-~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~  257 (274)
                      ++..|+||++.+..+ +.+..++|+|.||..||.+|++.+.+||+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            456899999999653 45778899999999999999999999999998774

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.41  E-value=1.6e-13  Score=97.73  Aligned_cols=53  Identities=42%  Similarity=0.856  Sum_probs=45.1

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCCCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHE  262 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~~  262 (274)
                      ++..|+||++.+..  ....++|||.||..||.+|++.+.+||+||..+......
T Consensus         4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   56 (68)
T 1chc_A            4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHT   56 (68)
T ss_dssp             CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEECC
T ss_pred             CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhhhhc
Confidence            45689999999874  357889999999999999999999999999998754333

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=1.1e-13  Score=98.52  Aligned_cols=52  Identities=23%  Similarity=0.672  Sum_probs=45.2

Q ss_pred             CCcccccccccccccC----CeeEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005          207 EDELTCTVCLEQVNVG----EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS  258 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~----~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~  258 (274)
                      .+...|+||++.+..+    +.+..++|||.||..||.+|++.+.+||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            4667899999998753    345788999999999999999999999999998864

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.40  E-value=1e-13  Score=99.43  Aligned_cols=54  Identities=22%  Similarity=0.631  Sum_probs=46.6

Q ss_pred             CCcccccccccccccC----CeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCC
Q 024005          207 EDELTCTVCLEQVNVG----EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW  260 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~----~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~  260 (274)
                      +++..|+||++.+..+    +....++|||.||..||.+|++.+.+||+||..+..+.
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   65 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence            4667899999998753    55678899999999999999999999999999987543

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.36  E-value=2.6e-13  Score=95.08  Aligned_cols=52  Identities=23%  Similarity=0.649  Sum_probs=45.0

Q ss_pred             CcccccccccccccC----CeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005          208 DELTCTVCLEQVNVG----EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       208 e~~~C~ICLe~~~~~----~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      ++..|+||++.+..+    +.+..++|||.||..||.+|++.+.+||+||..+...
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   57 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK   57 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence            356899999998753    4557889999999999999999999999999998764

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.35  E-value=5.1e-13  Score=104.39  Aligned_cols=51  Identities=25%  Similarity=0.484  Sum_probs=43.3

Q ss_pred             CCcccccccccccccC---------------CeeEEeCCCCccChhhHHHHHhcCCCCcccccccc
Q 024005          207 EDELTCTVCLEQVNVG---------------EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG  257 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~---------------~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~  257 (274)
                      .+++.|+||++.|...               ..+..++|+|.||..||.+||+.+.+||+||+.+.
T Consensus        35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            3567899999998754               13677899999999999999999999999999753

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=1.2e-12  Score=94.51  Aligned_cols=52  Identities=21%  Similarity=0.494  Sum_probs=44.4

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW  260 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~  260 (274)
                      ++...|+||++.+..+  +..++|||.||..||.+|++.+.+||+||+.+....
T Consensus        13 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   64 (72)
T 2djb_A           13 TPYILCSICKGYLIDA--TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ   64 (72)
T ss_dssp             CGGGSCTTTSSCCSSC--EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred             CCCCCCCCCChHHHCc--CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence            5677999999999864  333489999999999999999999999999987643

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=3.6e-13  Score=97.02  Aligned_cols=50  Identities=24%  Similarity=0.484  Sum_probs=44.2

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      .++..|+||++.+...   ..++|+|.||..||.+|++.+.+||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   62 (71)
T 2d8t_A           13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED   62 (71)
T ss_dssp             SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred             CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence            4667899999998765   6789999999999999999999999999988653

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=5.6e-13  Score=95.52  Aligned_cols=50  Identities=34%  Similarity=0.877  Sum_probs=44.4

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW  260 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~  260 (274)
                      .+...|+||++.+..    ..++|+|.||..||.+|++++.+||+||+.+....
T Consensus        13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred             CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence            456789999999875    67899999999999999999999999999987643

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1.6e-12  Score=95.92  Aligned_cols=48  Identities=23%  Similarity=0.521  Sum_probs=43.2

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCcccccccc
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG  257 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~  257 (274)
                      ++...|+||++.+..+   ..++|||.||..||.+|++...+||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            4567899999999764   56899999999999999999999999999986

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=2.1e-12  Score=95.92  Aligned_cols=53  Identities=21%  Similarity=0.549  Sum_probs=44.4

Q ss_pred             CCcccccccccccccCCeeEEeCCC-----CccChhhHHHHHhcC--CCCccccccccCCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCL-----HQFHANCIDPWLRQQ--GTCPVCKLRAGSGW  260 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCg-----H~FH~~CI~~WL~~~--~tCPlCR~~i~~~~  260 (274)
                      .++..|.||++++..++.+ .+||.     |.||..||++||..+  .+||+||+.+....
T Consensus        13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~   72 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET   72 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred             CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence            4566899999999877765 68996     999999999999876  48999999886543

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.28  E-value=7.9e-13  Score=107.48  Aligned_cols=49  Identities=33%  Similarity=0.843  Sum_probs=43.7

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      ++..|+||++.+..+   ..+||||.||..||..|+..+.+||+||.++...
T Consensus        52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK  100 (138)
T ss_dssp             HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred             ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence            456899999999865   6789999999999999999999999999998654

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.28  E-value=3e-12  Score=93.03  Aligned_cols=49  Identities=31%  Similarity=0.674  Sum_probs=42.5

Q ss_pred             CCcccccccccccccCCeeEEeC-CCCccChhhHHHHHhcC--CCCccccccccC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQ--GTCPVCKLRAGS  258 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~~--~tCPlCR~~i~~  258 (274)
                      .++..|+||++.+..+   ..++ |||.||..||.+|++.+  .+||+||+.+..
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2yur_A           13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS   64 (74)
T ss_dssp             CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred             CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence            5678999999999866   6799 99999999999999876  689999997543

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=2.7e-12  Score=91.04  Aligned_cols=50  Identities=22%  Similarity=0.521  Sum_probs=42.9

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHh-cCCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR-QQGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~-~~~tCPlCR~~i~~~  259 (274)
                      .+...|+||++.+..+   ..++|||.||..||.+|++ .+.+||+||..+..+
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            4678999999999866   4489999999999999994 567899999988764

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=3.8e-12  Score=94.76  Aligned_cols=53  Identities=23%  Similarity=0.591  Sum_probs=45.4

Q ss_pred             CCcccccccccccccCCe-eEEeCCCCccChhhHHHHHhcC---CCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEI-VRSLPCLHQFHANCIDPWLRQQ---GTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~-v~~lpCgH~FH~~CI~~WL~~~---~tCPlCR~~i~~~  259 (274)
                      ++...|+||++.+...+. ...++|||.||..||.+|++.+   .+||+||+.+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            567789999999987553 5778999999999999999876   7899999987654

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=3.6e-12  Score=91.80  Aligned_cols=50  Identities=26%  Similarity=0.631  Sum_probs=42.7

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHh---cCCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR---QQGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~---~~~tCPlCR~~i~~~  259 (274)
                      ++...|+||++.+..+   ..++|||.||..||.+|++   .+..||+||+.+...
T Consensus        18 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             ccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            5677999999998854   6679999999999999997   456899999988654

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.24  E-value=4.6e-12  Score=92.55  Aligned_cols=50  Identities=18%  Similarity=0.374  Sum_probs=43.9

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~~  259 (274)
                      .++..|+||++.+..+   ..++|||.||..||.+|++. +.+||+||..+...
T Consensus         6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            4677999999999865   66899999999999999987 78999999988654

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.22  E-value=1.1e-12  Score=104.18  Aligned_cols=51  Identities=27%  Similarity=0.527  Sum_probs=1.5

Q ss_pred             CCcccccccccccccC-------------C--eeEEeCCCCccChhhHHHHHhcCCCCcccccccc
Q 024005          207 EDELTCTVCLEQVNVG-------------E--IVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG  257 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~-------------~--~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~  257 (274)
                      .+++.|+||++.|...             +  .+..++|+|.||..||.+||+.+.+||+||+++.
T Consensus        46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             CCC---------------------------------------------------------------
T ss_pred             CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            3567899999999752             1  2333589999999999999999999999999754

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.20  E-value=3.6e-12  Score=98.08  Aligned_cols=50  Identities=24%  Similarity=0.624  Sum_probs=42.7

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC-CCCccccccccC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ-GTCPVCKLRAGS  258 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~-~tCPlCR~~i~~  258 (274)
                      +++..|+||++.+..+  +..++|||.||..||.+|++.+ .+||+||..+..
T Consensus        20 ~~~~~C~IC~~~~~~p--~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           20 AEVFRCFICMEKLRDA--RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             HHHTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCCccCCccccCc--cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            3567899999999854  3338999999999999999988 699999998854

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.20  E-value=1.6e-11  Score=90.44  Aligned_cols=50  Identities=36%  Similarity=0.782  Sum_probs=43.8

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc------CCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ------QGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~------~~tCPlCR~~i~~~  259 (274)
                      +++..|+||++.+..+   ..++|+|.||..||..|++.      ...||+||..+...
T Consensus        17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            4667999999999866   57899999999999999987      66899999998754

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=2.1e-11  Score=85.47  Aligned_cols=43  Identities=28%  Similarity=0.723  Sum_probs=37.8

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHh---cCCCCccc
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR---QQGTCPVC  252 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~---~~~tCPlC  252 (274)
                      +++..|+||++.+..+   ..++|||.||..||.+|++   .+.+||+|
T Consensus        18 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            5678999999999866   6779999999999999998   45689998

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.18  E-value=1e-11  Score=98.76  Aligned_cols=54  Identities=22%  Similarity=0.616  Sum_probs=46.7

Q ss_pred             CcccccccccccccC----CeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCCC
Q 024005          208 DELTCTVCLEQVNVG----EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWH  261 (274)
Q Consensus       208 e~~~C~ICLe~~~~~----~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~  261 (274)
                      ++..|+||++.+..+    +....++|||.||..||.+|++.+.+||+||+.+.....
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l   63 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   63 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence            567899999999754    455789999999999999999999999999999876544

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=2.8e-11  Score=89.02  Aligned_cols=50  Identities=32%  Similarity=0.784  Sum_probs=43.7

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc------CCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ------QGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~------~~tCPlCR~~i~~~  259 (274)
                      .+...|+||++.+..+   ..++|||.||..||..|++.      ...||+||..+...
T Consensus        17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecv_A           17 KEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE   72 (85)
T ss_dssp             CCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred             cCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence            4677999999999865   56799999999999999987      77999999998754

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.17  E-value=7.9e-12  Score=95.58  Aligned_cols=49  Identities=29%  Similarity=0.710  Sum_probs=42.3

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS  258 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~  258 (274)
                      +...|+||++.+..+  +..++|||.||..||.+|++.+.+||+||..+..
T Consensus        21 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           21 DLLRCGICFEYFNIA--MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCCcccCChhhCCc--CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            567899999999854  3334899999999999999999999999998875

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.16  E-value=5.3e-12  Score=92.16  Aligned_cols=50  Identities=32%  Similarity=0.700  Sum_probs=43.4

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc-------CCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-------QGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-------~~tCPlCR~~i~~~  259 (274)
                      +++..|+||++.+..+   ..++|||.||..||.+|++.       ...||+||..+...
T Consensus        10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~   66 (79)
T 2egp_A           10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE   66 (79)
T ss_dssp             CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred             ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence            4677999999999865   56899999999999999987       56899999998753

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.16  E-value=1.5e-11  Score=95.60  Aligned_cols=51  Identities=25%  Similarity=0.636  Sum_probs=43.7

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      +++..|+||++.+..+  +..++|||.||..||..|++.+.+||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           13 NPHLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             GGGTBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CCcCCCccCChHHhCc--CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            4577999999999854  44449999999999999999999999999988764

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.15  E-value=3.2e-11  Score=90.74  Aligned_cols=48  Identities=29%  Similarity=0.672  Sum_probs=41.9

Q ss_pred             CCcccccccccccccCCeeEEeC-CCCccChhhHHHHHhcC--CCCcccccccc
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQ--GTCPVCKLRAG  257 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~~--~tCPlCR~~i~  257 (274)
                      .++..|+||++.+..+   ..++ |||.||..||.+|+..+  ..||+||..+.
T Consensus        11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            5678999999999866   7889 99999999999999754  58999999873

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.15  E-value=1.2e-11  Score=98.43  Aligned_cols=48  Identities=29%  Similarity=0.679  Sum_probs=42.2

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC-CCccccccccC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG-TCPVCKLRAGS  258 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~-tCPlCR~~i~~  258 (274)
                      +...|+||++.+..+   ..++|||.||..||..|+..+. +||+||..+..
T Consensus        51 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            567899999999865   6789999999999999998655 89999999876

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.13  E-value=2.9e-11  Score=85.37  Aligned_cols=52  Identities=21%  Similarity=0.519  Sum_probs=41.5

Q ss_pred             Cccccccccc-ccccCCe-eEEeCCCCccChhhHHHHHhc-CCCCccccccccCC
Q 024005          208 DELTCTVCLE-QVNVGEI-VRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSG  259 (274)
Q Consensus       208 e~~~C~ICLe-~~~~~~~-v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~~  259 (274)
                      ++..|+||++ .+..+.. ...++|||.||..||.+|+.+ +..||+||..+..+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   56 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence            3568999999 7766543 245789999999999999765 46799999998754

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=2.6e-11  Score=83.26  Aligned_cols=43  Identities=37%  Similarity=0.873  Sum_probs=37.0

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHh---cCCCCccc
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR---QQGTCPVC  252 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~---~~~tCPlC  252 (274)
                      .+...|+||++.+..+   ..++|||.||..||.+|++   .+.+||+|
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            4667999999999876   5689999999999999954   56789998

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=7.9e-11  Score=86.08  Aligned_cols=51  Identities=18%  Similarity=0.473  Sum_probs=42.6

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC--CCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ--GTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~--~tCPlCR~~i~~~  259 (274)
                      +....|+||.+.+..++.  ...|+|.||..||.+||+.+  .+||+||.....+
T Consensus        13 ~~i~~C~IC~~~i~~g~~--C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~   65 (74)
T 2ct0_A           13 DAVKICNICHSLLIQGQS--CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE   65 (74)
T ss_dssp             SSSCBCSSSCCBCSSSEE--CSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred             CCCCcCcchhhHcccCCc--cCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence            456789999999987643  33799999999999999987  7999999876643

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.07  E-value=3.9e-11  Score=93.24  Aligned_cols=49  Identities=33%  Similarity=0.626  Sum_probs=42.1

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC---CCccccccccCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG---TCPVCKLRAGSG  259 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~---tCPlCR~~i~~~  259 (274)
                      +...|+||++.+..+   ..++|||.||..||..|+..+.   +||+||..+...
T Consensus        20 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (112)
T 1jm7_A           20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (112)
T ss_dssp             HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             CCCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence            456899999999865   5589999999999999998764   899999988764

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.07  E-value=3.8e-11  Score=100.07  Aligned_cols=50  Identities=36%  Similarity=0.809  Sum_probs=42.4

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCCccccccccC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGS  258 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~  258 (274)
                      .+...|+||++.+..  .+..++|||.||..||.+|++. +..||+||..+..
T Consensus        52 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           52 HSELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHHHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            356799999999985  3444599999999999999997 7789999998854

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.06  E-value=6.5e-11  Score=94.03  Aligned_cols=53  Identities=23%  Similarity=0.652  Sum_probs=45.8

Q ss_pred             CCcccccccccccccC----CeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVG----EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~----~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      ++...|+||++.+...    .....++|||.||..||.+|++.+.+||+||..+..+
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  126 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK  126 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence            4677899999998753    3457789999999999999999999999999998764

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.05  E-value=5.5e-11  Score=98.17  Aligned_cols=49  Identities=24%  Similarity=0.659  Sum_probs=43.0

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC-CCccccccccCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG-TCPVCKLRAGSG  259 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~-tCPlCR~~i~~~  259 (274)
                      +...|+||++.+..+   ..++|||.||..||..|+.... +||+||..+...
T Consensus        77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            567899999999865   5689999999999999998765 899999998765

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.03  E-value=2.8e-11  Score=94.94  Aligned_cols=49  Identities=29%  Similarity=0.669  Sum_probs=42.7

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCCccccccccC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGS  258 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~  258 (274)
                      .++..|+||++.+..+   ..++|||.||..||.+|+.. +.+||+||..+..
T Consensus        13 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            4567999999999866   67899999999999999976 6689999998763

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.03  E-value=8.4e-11  Score=92.84  Aligned_cols=50  Identities=30%  Similarity=0.604  Sum_probs=43.6

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC-CCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG-TCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~-tCPlCR~~i~~~  259 (274)
                      ++...|+||++.+..+   ..++|||.||..||.+|++.+. +||+||..+...
T Consensus        16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            5677999999999865   6689999999999999998765 999999988653

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.02  E-value=1.6e-10  Score=86.35  Aligned_cols=50  Identities=16%  Similarity=0.043  Sum_probs=45.0

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      .++..|+||++.+..+   +.++|||.|+..||.+|+..+.+||+||..+...
T Consensus        12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   61 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES   61 (85)
T ss_dssp             CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             chheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence            4678999999999977   7889999999999999999999999999988653

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.99  E-value=3.7e-10  Score=83.27  Aligned_cols=54  Identities=24%  Similarity=0.553  Sum_probs=42.0

Q ss_pred             CCcccccccccccccCCeeEEe--CCCCccChhhHHHHHhc-CCCCccccccccCCCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSL--PCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSGWH  261 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~l--pCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~~~~  261 (274)
                      +++..|+||++.+...+. ..+  +|||.||..|+..|+.. +..||.||+.+.....
T Consensus         9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            467799999998864332 234  49999999999998743 5689999999876543

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.98  E-value=1.4e-10  Score=91.07  Aligned_cols=49  Identities=22%  Similarity=0.514  Sum_probs=42.8

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCCccccccccCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSG  259 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~~  259 (274)
                      ++..|+||++.+..+   ..++|||.||..||.+|++. +.+||+||..+...
T Consensus        22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   71 (116)
T 1rmd_A           22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT   71 (116)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence            467899999999855   56899999999999999987 77999999998754

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.97  E-value=2.9e-10  Score=87.65  Aligned_cols=50  Identities=16%  Similarity=0.050  Sum_probs=45.2

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      .++..|+||++.+..+   +.++|||.|+..||.+|+..+.+||+||.++...
T Consensus        27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   76 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES   76 (100)
T ss_dssp             STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred             cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence            4678999999999977   7889999999999999999899999999988753

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.96  E-value=4.1e-10  Score=86.50  Aligned_cols=50  Identities=16%  Similarity=0.047  Sum_probs=45.1

Q ss_pred             CCcccccccccccccCCeeEEeCCC-CccChhhHHHHHhcCCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCL-HQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCg-H~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      .++..|+||++.+..+   +.++|| |.|+..||.+|+..+.+||+||.++...
T Consensus        20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~   70 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence            4678999999999977   778999 9999999999999999999999988753

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.96  E-value=2.8e-10  Score=80.61  Aligned_cols=48  Identities=19%  Similarity=0.396  Sum_probs=40.8

Q ss_pred             CcccccccccccccCCeeEEe--CCCCc-cChhhHHHHHhcCCCCccccccccC
Q 024005          208 DELTCTVCLEQVNVGEIVRSL--PCLHQ-FHANCIDPWLRQQGTCPVCKLRAGS  258 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~l--pCgH~-FH~~CI~~WL~~~~tCPlCR~~i~~  258 (274)
                      ++..|.||++.....   ..+  ||||. ||..|+..|.+.+..||+||+++..
T Consensus         7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   57 (64)
T 2vje_A            7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM   57 (64)
T ss_dssp             GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred             CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence            556899999987644   444  99999 8999999999999999999998853

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.93  E-value=4e-10  Score=106.04  Aligned_cols=50  Identities=22%  Similarity=0.567  Sum_probs=43.2

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHh-cCCCCccccccccCCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR-QQGTCPVCKLRAGSGW  260 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~-~~~tCPlCR~~i~~~~  260 (274)
                      ....|+||++.+...   ..+||||.||..|+..|+. .+.+||+||..+....
T Consensus       331 ~~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~  381 (389)
T 2y1n_A          331 TFQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE  381 (389)
T ss_dssp             SSSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred             CCCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence            346899999998654   7899999999999999998 6889999999887643

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.91  E-value=2.3e-10  Score=93.48  Aligned_cols=48  Identities=19%  Similarity=0.461  Sum_probs=42.2

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC-CCcccccccc
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG-TCPVCKLRAG  257 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~-tCPlCR~~i~  257 (274)
                      ++...|+||++.+..+   ..++|||.||..||.+|++... +||+||.++.
T Consensus        29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~   77 (141)
T 3knv_A           29 EAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI   77 (141)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred             CcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence            5778999999999866   6689999999999999998765 8999999764

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.90  E-value=3.1e-10  Score=78.08  Aligned_cols=47  Identities=28%  Similarity=0.678  Sum_probs=40.3

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      ++...|+||++.+..+   ..++|||.||..||..|   ...||+||+.+...
T Consensus         4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG   50 (56)
T ss_dssp             CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred             ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence            4667899999999876   67899999999999884   67899999988754

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.90  E-value=6.3e-10  Score=78.49  Aligned_cols=50  Identities=18%  Similarity=0.324  Sum_probs=40.4

Q ss_pred             CcccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCCccccccccC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGS  258 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~-FH~~CI~~WL~~~~tCPlCR~~i~~  258 (274)
                      ....|.||++..... .+..+||||. ||..|+.+|.+.+..||+||+++..
T Consensus         6 ~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   56 (63)
T 2vje_B            6 LLKPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL   56 (63)
T ss_dssp             GGSBCTTTSSSBSCE-EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred             cCCCCcccCCcCCCe-EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence            456899999986643 1122499998 9999999999988999999998854

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.86  E-value=3.5e-10  Score=89.14  Aligned_cols=46  Identities=30%  Similarity=0.605  Sum_probs=40.3

Q ss_pred             CcccccccccccccCCeeEEe-CCCCccChhhHHHHHhcCCCCccccccccC
Q 024005          208 DELTCTVCLEQVNVGEIVRSL-PCLHQFHANCIDPWLRQQGTCPVCKLRAGS  258 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~l-pCgH~FH~~CI~~WL~~~~tCPlCR~~i~~  258 (274)
                      +...|+||++.+..+   ..+ +|||.||..||..|+.  ..||+||..+..
T Consensus        21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~   67 (117)
T 1jm7_B           21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI   67 (117)
T ss_dssp             HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred             hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence            567899999999866   566 8999999999999987  889999998853

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.84  E-value=5.4e-10  Score=81.21  Aligned_cols=45  Identities=22%  Similarity=0.533  Sum_probs=38.9

Q ss_pred             CcccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCCccccccccCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~-FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      ++..|+||++.+...   ..+||||. ||..|+..|    ..||+||..+...
T Consensus        23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~   68 (74)
T 4ic3_A           23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK   68 (74)
T ss_dssp             HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred             cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence            456899999998754   77899999 999999998    8899999988653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.77  E-value=3.4e-09  Score=94.12  Aligned_cols=49  Identities=16%  Similarity=0.142  Sum_probs=42.9

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC-CCCccccccccC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ-GTCPVCKLRAGS  258 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~-~tCPlCR~~i~~  258 (274)
                      .+...|+||++.+..+   +++||||.||..||.+|+..+ .+||+||.++..
T Consensus       206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            4678999999999977   789999999999999999874 459999998864

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.74  E-value=3.7e-09  Score=88.32  Aligned_cols=50  Identities=30%  Similarity=0.604  Sum_probs=43.4

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC-CCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG-TCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~-tCPlCR~~i~~~  259 (274)
                      ++...|+||++.+..+   ..++|||.||..||.+|++.+. +||+||..+...
T Consensus        16 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (170)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence            5678999999999865   5689999999999999998754 999999988664

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=4.9e-09  Score=79.61  Aligned_cols=46  Identities=20%  Similarity=0.483  Sum_probs=39.0

Q ss_pred             CCcccccccccccccCCeeEEeC-CCCccChhhHHHHHhcC------CCCcc--cccc
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQ------GTCPV--CKLR  255 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~~------~tCPl--CR~~  255 (274)
                      .++..|+||++.+..+   +.++ |||.|+..||.+|+..+      .+||+  |+..
T Consensus         5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            3567899999999966   6775 99999999999999764      48999  9855

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.71  E-value=1e-08  Score=74.50  Aligned_cols=45  Identities=22%  Similarity=0.541  Sum_probs=37.7

Q ss_pred             CcccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCCccccccccCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~-FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      ++..|+||++.+...   ..+||||. ||..|+..    ...||+||.++...
T Consensus        24 ~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~   69 (75)
T 2ecg_A           24 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK   69 (75)
T ss_dssp             HHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred             CCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence            456899999998755   67899999 99999964    47899999998764

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.71  E-value=2.5e-09  Score=98.67  Aligned_cols=55  Identities=29%  Similarity=0.794  Sum_probs=42.6

Q ss_pred             CCcccccccccccccCCee----EE-eCCCCccChhhHHHHHhcC-----------CCCccccccccCCCC
Q 024005          207 EDELTCTVCLEQVNVGEIV----RS-LPCLHQFHANCIDPWLRQQ-----------GTCPVCKLRAGSGWH  261 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v----~~-lpCgH~FH~~CI~~WL~~~-----------~tCPlCR~~i~~~~~  261 (274)
                      +....|+||++.+..+..+    .. .+|+|.||..|+.+||+..           ++||.||+++..++.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~  376 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA  376 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence            4566899999998863222    22 4699999999999999753           469999999987654

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.71  E-value=8.2e-09  Score=72.26  Aligned_cols=49  Identities=24%  Similarity=0.619  Sum_probs=38.3

Q ss_pred             CCcccccccccccccCCeeEEeCCC--C---ccChhhHHHHHhc--CCCCccccccccC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCL--H---QFHANCIDPWLRQ--QGTCPVCKLRAGS  258 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCg--H---~FH~~CI~~WL~~--~~tCPlCR~~i~~  258 (274)
                      ++...|.||+++..  +.+ .+||.  +   .||..|+.+|+..  +.+||+||+.+..
T Consensus         4 ~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~   59 (60)
T 1vyx_A            4 EDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             CSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence            46678999999843  333 68854  4   8999999999964  6789999998753

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.62  E-value=2.5e-08  Score=71.39  Aligned_cols=46  Identities=26%  Similarity=0.595  Sum_probs=38.6

Q ss_pred             CCcccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~-FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      ++...|.||++.....   ..+||||. ||..|+..    ...||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~   59 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES   59 (68)
T ss_dssp             CCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred             CCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence            4567899999987654   88999999 99999874    57899999988764

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.59  E-value=2e-08  Score=85.16  Aligned_cols=50  Identities=16%  Similarity=0.131  Sum_probs=43.3

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC-CCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ-GTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~-~tCPlCR~~i~~~  259 (274)
                      .+...|+||++.+..+   +.+||||.|+..||..|+..+ .+||+|+.++...
T Consensus       104 p~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~  154 (179)
T 2f42_A          104 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD  154 (179)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             cHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence            4678999999999976   778999999999999999874 4799999988653

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.53  E-value=3.4e-08  Score=74.60  Aligned_cols=48  Identities=21%  Similarity=0.562  Sum_probs=39.3

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhc--------CCCCcc--cccc
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ--------QGTCPV--CKLR  255 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~--------~~tCPl--CR~~  255 (274)
                      +..+|+||++.+..++.+...+|||.||..|+..++..        ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            45689999999987665555679999999999999863        237999  9987

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.52  E-value=1.6e-08  Score=74.53  Aligned_cols=45  Identities=29%  Similarity=0.648  Sum_probs=37.9

Q ss_pred             CcccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCCccccccccCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~-FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      ++..|.||++.....   ..+||||. ||..|+..|    ..||+||..+...
T Consensus        17 ~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~   62 (79)
T 2yho_A           17 EAMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV   62 (79)
T ss_dssp             HHTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred             CCCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence            456899999987654   78999999 999999877    4999999988754

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.47  E-value=6.5e-08  Score=86.33  Aligned_cols=50  Identities=26%  Similarity=0.480  Sum_probs=42.0

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC--CCCcc--ccccccC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ--GTCPV--CKLRAGS  258 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~--~tCPl--CR~~i~~  258 (274)
                      ..+..|+||++.+.  +.|+...|||.||..||.+|++.+  .+||+  ||+.+..
T Consensus       179 ~~el~CPIcl~~f~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~  232 (267)
T 3htk_C          179 KIELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM  232 (267)
T ss_dssp             BCCSBCTTTSSBCS--SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred             ceeeECcCccCccc--CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence            56789999999998  445556899999999999999865  47999  9997754

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.41  E-value=7.7e-08  Score=67.42  Aligned_cols=48  Identities=8%  Similarity=0.145  Sum_probs=41.9

Q ss_pred             ccccccccccccCCeeEEe-CCCCccChhhHHHHHhcCCCCccccccccCCC
Q 024005          210 LTCTVCLEQVNVGEIVRSL-PCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW  260 (274)
Q Consensus       210 ~~C~ICLe~~~~~~~v~~l-pCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~  260 (274)
                      ..|+||++.+..+   ..+ +|||.|...||.+|++.+.+||++++++....
T Consensus         4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~   52 (61)
T 2bay_A            4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE   52 (61)
T ss_dssp             CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred             EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence            4799999999955   556 89999999999999999899999999886543

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.40  E-value=5e-08  Score=90.73  Aligned_cols=46  Identities=26%  Similarity=0.622  Sum_probs=39.5

Q ss_pred             CCcccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~-FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      +++..|+||++.+...   ..+||||. ||..|+..|    ..||+||..+...
T Consensus       293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~  339 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKGT  339 (345)
T ss_dssp             HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred             cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence            3567899999998755   77899999 999999988    7899999988653

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.92  E-value=6.3e-06  Score=62.93  Aligned_cols=49  Identities=22%  Similarity=0.417  Sum_probs=39.8

Q ss_pred             cccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCCccccccccCCCC
Q 024005          211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSGWH  261 (274)
Q Consensus       211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~~~~  261 (274)
                      -|.+|--.+.  ...+.+||+|.||.+|+..|.++ .++||.|+.++..-..
T Consensus         3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~   52 (101)
T 3vk6_A            3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ   52 (101)
T ss_dssp             BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred             ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence            4788876665  34588999999999999999854 6899999999876544

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.77  E-value=2.4e-05  Score=69.06  Aligned_cols=50  Identities=18%  Similarity=0.489  Sum_probs=40.3

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC--CCccccccccCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG--TCPVCKLRAGSG  259 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~--tCPlCR~~i~~~  259 (274)
                      ....|.||.+-+..+.  .+-.|+|.||..|+.+|++.+.  .||.|+...+..
T Consensus       179 ~i~~C~iC~~iv~~g~--~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          179 AVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             TCCBCTTTCSBCSSCE--ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCCcCcchhhHHhCCc--ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            4678999999999762  2334999999999999998754  899999875543

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=95.37  E-value=0.0065  Score=45.62  Aligned_cols=35  Identities=11%  Similarity=0.465  Sum_probs=27.6

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHH
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW  242 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~W  242 (274)
                      ++..|.||.+.+........+.|+|.||..|+..+
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence            35689999987554444556999999999999983

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=93.67  E-value=0.047  Score=38.33  Aligned_cols=46  Identities=24%  Similarity=0.496  Sum_probs=34.2

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----CCccccccc
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLRA  256 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~----tCPlCR~~i  256 (274)
                      ....|.||.+.   ++.+..-.|...||..|+.+.|....    .||.|+...
T Consensus        11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            34579999753   55555555999999999998886643    699997543

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=90.60  E-value=0.12  Score=37.97  Aligned_cols=34  Identities=21%  Similarity=0.526  Sum_probs=23.4

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHH
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW  242 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~W  242 (274)
                      .+..|.||- .+..++....--|+-+||..|+.+-
T Consensus        14 ~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           14 NDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred             CCcccCccc-cccccceeccccccccccHhhcccc
Confidence            566899994 4444432222227999999999996

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=88.72  E-value=0.22  Score=34.12  Aligned_cols=45  Identities=31%  Similarity=0.774  Sum_probs=32.6

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC----CCCccccc
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ----GTCPVCKL  254 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~----~tCPlCR~  254 (274)
                      ..+..|.||...   ++.+..-.|...||..|+..-+...    =.||.|+.
T Consensus         9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~   57 (61)
T 2l5u_A            9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK   57 (61)
T ss_dssp             CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred             CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence            456789999874   4555555588999999998755432    25999965

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=88.54  E-value=0.25  Score=36.68  Aligned_cols=50  Identities=26%  Similarity=0.638  Sum_probs=35.4

Q ss_pred             CCCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----CCccccccccC
Q 024005          206 TEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLRAGS  258 (274)
Q Consensus       206 ~~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~----tCPlCR~~i~~  258 (274)
                      ++.+..|.+|...   ++.+..-.|.-.||..|+.+=+....    .||.|+..-..
T Consensus        22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~   75 (88)
T 1fp0_A           22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDL   75 (88)
T ss_dssp             SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSS
T ss_pred             CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCcc
Confidence            3566789999865   45555555889999999987654422    59999765443

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=86.52  E-value=0.25  Score=41.12  Aligned_cols=46  Identities=30%  Similarity=0.598  Sum_probs=33.7

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC----CCCccccccc
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ----GTCPVCKLRA  256 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~----~tCPlCR~~i  256 (274)
                      .+..|.+|...   |+.+..-.|...||..|+.+-+...    -.||.|+..-
T Consensus         3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   52 (184)
T 3o36_A            3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS   52 (184)
T ss_dssp             SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence            44579999854   5555555599999999998766543    2599998654

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=86.13  E-value=0.14  Score=43.61  Aligned_cols=47  Identities=28%  Similarity=0.550  Sum_probs=33.3

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC----CCCccccccc
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ----GTCPVCKLRA  256 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~----~tCPlCR~~i  256 (274)
                      ..+..|.+|...   ++.+..=.|...||..|+.+.+...    =.||.|+..-
T Consensus         5 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~   55 (207)
T 3u5n_A            5 PNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG   55 (207)
T ss_dssp             SSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence            355679999754   4444444489999999998766543    2699997644

>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A

Probab=85.00  E-value=0.23  Score=34.54  Aligned_cols=46  Identities=33%  Similarity=0.733  Sum_probs=32.6

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----CCcccccc
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLR  255 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~----tCPlCR~~  255 (274)
                      ..+..|.||.+.   ++.+..-.|...||..|+.+-+....    .||.|...
T Consensus         6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~   55 (66)
T 1xwh_A            6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA   55 (66)
T ss_dssp             SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred             CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence            356689999864   45555555889999999986554322    59999653

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=84.41  E-value=0.21  Score=34.17  Aligned_cols=47  Identities=30%  Similarity=0.670  Sum_probs=32.4

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC----CCCccccccc
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ----GTCPVCKLRA  256 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~----~tCPlCR~~i  256 (274)
                      ..+..|.||.+.   ++.+..-.|...||..|+.+-+...    =.||.|+...
T Consensus         7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~   57 (61)
T 1mm2_A            7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence            356689999863   4444445588999999998655432    2599997643

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.25  E-value=0.14  Score=34.47  Aligned_cols=45  Identities=31%  Similarity=0.758  Sum_probs=31.4

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----CCccccc
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKL  254 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~----tCPlCR~  254 (274)
                      ..+..|.+|...   ++.+..-.|...||..|+.+-+....    .||.|+.
T Consensus         7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~   55 (56)
T 2yql_A            7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD   55 (56)
T ss_dssp             SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred             CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence            356689999874   45555555899999999986554322    4888853

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=83.82  E-value=0.59  Score=48.48  Aligned_cols=50  Identities=16%  Similarity=0.141  Sum_probs=43.7

Q ss_pred             CCcccccccccccccCCeeEEeCCC-CccChhhHHHHHhcCCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCL-HQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCg-H~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      -+...|+|-++-+..+   +.+|.| +.|-..+|.+||..+.+||.=|+++...
T Consensus       889 P~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~  939 (968)
T 3m62_A          889 PDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE  939 (968)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred             cHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence            5677899999999877   789987 5899999999999999999999888653

>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}

Probab=83.37  E-value=0.12  Score=35.28  Aligned_cols=47  Identities=30%  Similarity=0.706  Sum_probs=33.4

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----CCcccccccc
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLRAG  257 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~----tCPlCR~~i~  257 (274)
                      .+..|.+|...   ++.+..-.|...||..|+.+-+....    .||.|+....
T Consensus         4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~   54 (60)
T 2puy_A            4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML   54 (60)
T ss_dssp             CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred             CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence            45689999874   55555556999999999986554322    5999976543

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=82.93  E-value=0.4  Score=31.26  Aligned_cols=44  Identities=27%  Similarity=0.652  Sum_probs=30.0

Q ss_pred             cccccccccccCCeeEEeCCCCccChhhHHHHHhcC----CCCccccc
Q 024005          211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ----GTCPVCKL  254 (274)
Q Consensus       211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~----~tCPlCR~  254 (274)
                      .|.||...-..++.+..-.|...||..|+.+=+...    =.||.|+.
T Consensus         2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            488998764444445555589999999997644332    24998864

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=82.74  E-value=0.42  Score=33.82  Aligned_cols=52  Identities=17%  Similarity=0.356  Sum_probs=35.2

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc----CCCCccccccccC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ----QGTCPVCKLRAGS  258 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~----~~tCPlCR~~i~~  258 (274)
                      ++...|.||........-+..-.|..-||..|+..-...    .-.||.|+..+..
T Consensus        16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k   71 (75)
T 2k16_A           16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK   71 (75)
T ss_dssp             CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred             CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence            355679999877543334444458999999998754432    3369999876643

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=81.80  E-value=0.38  Score=36.64  Aligned_cols=47  Identities=23%  Similarity=0.533  Sum_probs=32.0

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc----CCCCcccc
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ----QGTCPVCK  253 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~----~~tCPlCR  253 (274)
                      .++..|.||.+.-...+.+..-.|...||..|+...+..    .-.||.|+
T Consensus         5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~   55 (111)
T 2ysm_A            5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK   55 (111)
T ss_dssp             CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred             CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence            356789999877333333566669999999999887542    22466654

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2

Probab=81.47  E-value=1.1  Score=33.34  Aligned_cols=46  Identities=26%  Similarity=0.656  Sum_probs=29.0

Q ss_pred             CCcccccccccccccCCeeEEeC--CC-CccChhhHHHHHhc----CCCCccccccc
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLP--CL-HQFHANCIDPWLRQ----QGTCPVCKLRA  256 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lp--Cg-H~FH~~CI~~WL~~----~~tCPlCR~~i  256 (274)
                      .+..-| ||..... ++-+..=.  |. .-||..|+.  |..    +-.||.|+..-
T Consensus        34 ~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~   86 (91)
T 1weu_A           34 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES   86 (91)
T ss_dssp             CCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred             CCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence            344556 9988653 44444444  54 579999986  433    23699997643

>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1

Probab=81.06  E-value=1  Score=31.49  Aligned_cols=32  Identities=22%  Similarity=0.440  Sum_probs=26.4

Q ss_pred             CCcccccccccccccCCeeEEeCC-CCccChhhHHHH
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPC-LHQFHANCIDPW  242 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpC-gH~FH~~CI~~W  242 (274)
                      ++..-|.||.++    ..++.+.| +-.||..|..+-
T Consensus         6 ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~   38 (67)
T 2d8v_A            6 SGLPWCCICNED----ATLRCAGCDGDLYCARCFREG   38 (67)
T ss_dssp             CCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred             cCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence            566789999998    45788889 889999997764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	274
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	4e-18
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-13
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	2e-12
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	4e-11
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	9e-11
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	1e-10
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	1e-09
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	1e-09
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	7e-09
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	9e-08
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	3e-07
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	6e-07
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	1e-05
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	0.004

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 74.1 bits (182), Expect = 4e-18
 Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 207 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCK 253
           +D + C VCL ++  GE  R LP C H FHA C+D WL    TCP+C+
Sbjct: 3   DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 61.5 bits (149), Expect = 2e-13
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
           C +CLE  +      +LPCLH F   CI  W+RQ  TCP+CK
Sbjct: 8   CPICLE--DPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCK 47

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 2e-12
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 20/81 (24%)

Query: 192 QKKLET----SISVGNLKTEDELTCTVCLEQVN---------------VGEIVRSLPCLH 232
           +K+ E     ++++       +  C +C   +                    V    C H
Sbjct: 1   KKRFEVKKWNAVALWAWDIVVD-NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH 59

Query: 233 QFHANCIDPWLRQQGTCPVCK 253
            FH +CI  WL+ +  CP+  
Sbjct: 60  AFHFHCISRWLKTRQVCPLDN 80

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (134), Expect = 4e-11
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 189 PAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG- 247
              Q++ E    +G+        C +C E     + V+  PC H    +C+  W   +G 
Sbjct: 7   KVTQEQYELYCEMGS----TFQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQ 59

Query: 248 TCPVCK 253
            CP C+
Sbjct: 60  GCPFCR 65

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 54.1 bits (129), Expect = 9e-11
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 204 LKTEDELTCTVCLEQVNVGEIV--RSLPCLHQFHANCIDPWLRQQG--TCPVCK 253
           ++ ED   C +C E++             L   H +C+  WL       C +C 
Sbjct: 1   MEDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICG 54

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 1e-10
 Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 3/49 (6%)

Query: 208 DELTCTVCLEQVNVGEIVRSL--PCLHQFHANCIDPWLR-QQGTCPVCK 253
           D+  C  C         ++ +   C H    +C+D       G CP C 
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECG 50

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 1e-09
 Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 21/106 (19%)

Query: 184 GSSSSPAEQKKLETSISVGNLKTEDELTCTVCLEQVNV---------------GEIVRSL 228
           GSS S  E +++        LK   E  C +C+E++ V                 + R  
Sbjct: 1   GSSGSSGEPEQVIRKY-TEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLT 59

Query: 229 PCLHQFHANCIDPWLRQQ-----GTCPVCKLRAGSGWHETRQVEMD 269
            C H FH  C+              CP CK   G         +M+
Sbjct: 60  KCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGKME 105

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 1e-09
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 210 LTCTVCLEQVNVGEIV-RSLPCLHQFHANCIDPWLRQQGT-CPVCK 253
           + C +C+E + + +I      C +Q    C       +   CP C+
Sbjct: 1   VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACR 46

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (116), Expect = 7e-09
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 6/47 (12%)

Query: 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
              L C  C  +    +  + LPCLH   + C++        CP+C+
Sbjct: 4   FQFLRCQQCQAEA---KCPKLLPCLHTLCSGCLE---ASGMQCPICQ 44

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 9e-08
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG---TCPVCK 253
           +  L C +CLE +   +   S  C H F   C+   L Q+     CP+CK
Sbjct: 19  QKILECPICLELI---KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCK 65

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 3e-07
 Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 8/58 (13%)

Query: 206 TEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG--------TCPVCKLR 255
           +     C +CL +  V ++     C   F   C+  ++            +CP     
Sbjct: 2   SSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACP 59

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.5 bits (105), Expect = 6e-07
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG-TCPVCK 253
              ++C +C   +          C H F   CI   L+  G  CP C+
Sbjct: 21  VKSISCQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCPSCR 65

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 1e-05
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
           E  L C+ C   +     +    C H F +NC+   +     CPVC 
Sbjct: 20  EKLLRCSRCTNILREPVCL--GGCEHIFCSNCVSDCIGTG--CPVCY 62

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.8 bits (74), Expect = 0.004
 Identities = 6/44 (13%), Positives = 16/44 (36%), Gaps = 2/44 (4%)

Query: 210 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
           + C +  +       V S      F  + ++ +++  G  P+  
Sbjct: 1   MLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDTGNDPITN 42

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	274
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.64
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.55
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.48
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.38
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.37
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.36
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.19
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.18
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.17
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.15
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.15
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.98
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.96
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.96
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.72
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.39
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	92.12
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	88.53
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	85.71
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	85.58
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	80.62

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.64  E-value=3.1e-17  Score=112.03  Aligned_cols=51  Identities=47%  Similarity=1.073  Sum_probs=46.0

Q ss_pred             CCcccccccccccccCCeeEEeC-CCCccChhhHHHHHhcCCCCcccccccc
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRAG  257 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~~~tCPlCR~~i~  257 (274)
                      +++..|+||+++|..++.+..++ |+|.||..||.+|++.+.+||+||+++.
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            35567999999999999888876 9999999999999999999999999763

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.55  E-value=1.4e-15  Score=107.95  Aligned_cols=52  Identities=42%  Similarity=0.891  Sum_probs=44.4

Q ss_pred             cccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCCCC
Q 024005          209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHE  262 (274)
Q Consensus       209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~~  262 (274)
                      .+.|+||++.+..  .++.+||||.||..||.+|++.+.+||+||+++......
T Consensus         5 ~d~C~IC~~~~~~--~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~~~~~   56 (68)
T d1chca_           5 AERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHT   56 (68)
T ss_dssp             CCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEECC
T ss_pred             CCCCccCCcCccC--CcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHhhccc
Confidence            4479999999873  456789999999999999999999999999998764433

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=1.1e-14  Score=112.94  Aligned_cols=63  Identities=27%  Similarity=0.493  Sum_probs=49.1

Q ss_pred             CCcccccccccccccC---------------CeeEEeCCCCccChhhHHHHHhcC-----CCCccccccccCCCCCCCCc
Q 024005          207 EDELTCTVCLEQVNVG---------------EIVRSLPCLHQFHANCIDPWLRQQ-----GTCPVCKLRAGSGWHETRQV  266 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~---------------~~v~~lpCgH~FH~~CI~~WL~~~-----~tCPlCR~~i~~~~~~~~~~  266 (274)
                      ..+..|+||++.+...               ..+..++|+|.||..||.+||+.+     .+||+||..+..+......+
T Consensus        23 ~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~~~qP~~  102 (114)
T d1v87a_          23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWG  102 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTS
T ss_pred             cccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccCcCCCCCC
Confidence            3455799999987532               245678899999999999999753     37999999998887766665


Q ss_pred             ccc
Q 024005          267 EMD  269 (274)
Q Consensus       267 ~~~  269 (274)
                      ++.
T Consensus       103 ~~~  105 (114)
T d1v87a_         103 KME  105 (114)
T ss_dssp             SCC
T ss_pred             cee
Confidence            554

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.2e-13  Score=102.50  Aligned_cols=50  Identities=26%  Similarity=0.511  Sum_probs=41.8

Q ss_pred             CcccccccccccccCC---------------eeEEeCCCCccChhhHHHHHhcCCCCcccccccc
Q 024005          208 DELTCTVCLEQVNVGE---------------IVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG  257 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~---------------~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~  257 (274)
                      .++.|+||++.+....               .+..++|+|.||..||.+||+.+.+||+||++..
T Consensus        20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            3456999998875432               3677889999999999999999999999999764

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.5e-13  Score=96.39  Aligned_cols=52  Identities=21%  Similarity=0.478  Sum_probs=41.4

Q ss_pred             CcccccccccccccC-C-eeEEeCCCCccChhhHHHHHhc-CCCCccccccccCC
Q 024005          208 DELTCTVCLEQVNVG-E-IVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSG  259 (274)
Q Consensus       208 e~~~C~ICLe~~~~~-~-~v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~~  259 (274)
                      ++..|+||++.+..+ + .+..++|||.||..||.+|++. +.+||+||+++..+
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~   56 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccc
Confidence            456899999986433 2 3456789999999999999965 55799999988654

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.2e-13  Score=99.13  Aligned_cols=49  Identities=22%  Similarity=0.568  Sum_probs=41.8

Q ss_pred             cccccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCCccccccccCCC
Q 024005          209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSGW  260 (274)
Q Consensus       209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~~~  260 (274)
                      ...|+||++.+...   +.+||||.||.+||..||+. +.+||+||+.+....
T Consensus        23 ~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          23 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TTBCTTTSSSBCCE---ECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCCccCCCcCCCe---EEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            45799999998754   78999999999999999975 568999999997654

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=8.2e-14  Score=93.53  Aligned_cols=48  Identities=23%  Similarity=0.553  Sum_probs=40.5

Q ss_pred             cccccccccccCCee-EEeCCCCccChhhHHHHHhc-CCCCccccccccC
Q 024005          211 TCTVCLEQVNVGEIV-RSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGS  258 (274)
Q Consensus       211 ~C~ICLe~~~~~~~v-~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~  258 (274)
                      +|+||+++|..++.. ..++|||.||..|+.+|++. +.+||+||+++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            699999999876543 45689999999999999986 4579999998865

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=3.3e-12  Score=94.28  Aligned_cols=50  Identities=22%  Similarity=0.470  Sum_probs=42.5

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCCccccccccCCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSGW  260 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~~~  260 (274)
                      +...|+||++.+..+   ..++|||.||..||.+|++. +.+||.||.++....
T Consensus        22 ~~l~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~   72 (86)
T d1rmda2          22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (86)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             cCcCCccCCcchhcc---eecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhh
Confidence            456899999999865   77899999999999999975 458999999886543

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=3.1e-12  Score=86.94  Aligned_cols=46  Identities=9%  Similarity=0.162  Sum_probs=40.6

Q ss_pred             cccccccccccCCeeEEe-CCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005          211 TCTVCLEQVNVGEIVRSL-PCLHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       211 ~C~ICLe~~~~~~~v~~l-pCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      .|+||++.+..+   ..+ .|||.||.+||.+||+++++||+||+++..+
T Consensus         2 ~C~Ic~~~~~~P---v~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~   48 (56)
T d2baya1           2 LCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   48 (56)
T ss_dssp             CCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             CCccCCchHHhc---CccCCCCCcccHHHHHHHHhhccCCCccCCcCCHH
Confidence            699999999855   555 5999999999999999999999999988764

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.7e-12  Score=96.83  Aligned_cols=49  Identities=33%  Similarity=0.626  Sum_probs=41.7

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC---CCccccccccCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG---TCPVCKLRAGSG  259 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~---tCPlCR~~i~~~  259 (274)
                      +...|+||++.+..+   ..++|||.||..||.+|++.+.   .||+||..+...
T Consensus        20 ~~l~CpIC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (103)
T d1jm7a_          20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (103)
T ss_dssp             HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             cCcCCCccCchhCCe---EEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChh
Confidence            456899999999866   5689999999999999997653   799999988643

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2.9e-12  Score=87.16  Aligned_cols=47  Identities=28%  Similarity=0.680  Sum_probs=40.2

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW  260 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~  260 (274)
                      +...|+||++.+..+   +.+||||.||..||.+|   +.+||+||+++....
T Consensus         5 ~~l~C~IC~~~~~~p---~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T d1bora_           5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             CCCCCcccCcccCCC---EEecCCCHHhHHHHHcC---CCcCcCCCCcccCCC
Confidence            446899999999866   67899999999999876   778999999987653

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.15  E-value=9.3e-12  Score=85.53  Aligned_cols=50  Identities=26%  Similarity=0.638  Sum_probs=39.2

Q ss_pred             CCCcccccccccccccCCeeEEeC-----CCCccChhhHHHHHh--cCCCCccccccccC
Q 024005          206 TEDELTCTVCLEQVNVGEIVRSLP-----CLHQFHANCIDPWLR--QQGTCPVCKLRAGS  258 (274)
Q Consensus       206 ~~e~~~C~ICLe~~~~~~~v~~lp-----CgH~FH~~CI~~WL~--~~~tCPlCR~~i~~  258 (274)
                      +++...|.||++++...   ...|     |+|.||..||.+|++  ++.+||+||+++..
T Consensus         3 ded~~~C~IC~~~~~~~---~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           3 DEDVPVCWICNEELGNE---RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             TCSCCEETTTTEECSCC---CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCCCCCccCCccCCCc---eeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeec
Confidence            45777999999988754   2333     469999999999995  45689999998754

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=3e-11  Score=90.66  Aligned_cols=48  Identities=29%  Similarity=0.522  Sum_probs=39.2

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      +...|+||++.+..+  +...+|||.||..||.+|+.  ..||.||.++...
T Consensus        21 ~~l~C~IC~~~~~~p--v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~   68 (97)
T d1jm7b_          21 KLLRCSRCTNILREP--VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ   68 (97)
T ss_dssp             HTTSCSSSCSCCSSC--BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred             hcCCCccCCchhhcC--ceeCCCCCchhHHHHHHHHh--ccccccCCcCchh
Confidence            456899999999855  44457999999999999984  4599999887543

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=1.4e-10  Score=83.97  Aligned_cols=49  Identities=16%  Similarity=0.146  Sum_probs=42.5

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCCccccccccC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGS  258 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~  258 (274)
                      .++..|+||++.+..+   +.++|||.||..||.+|+.+ +.+||.||.++..
T Consensus         5 P~~l~CpIc~~l~~dP---v~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           5 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CccccCcCcCchhhhh---cccCCcCeecHHHHHHHHhcCCccCCCccccccc
Confidence            3677999999999866   67899999999999999975 5579999998764

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.96  E-value=2.3e-10  Score=82.31  Aligned_cols=50  Identities=18%  Similarity=0.359  Sum_probs=43.2

Q ss_pred             CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC-CCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ-GTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~-~tCPlCR~~i~~~  259 (274)
                      .++..|+||++.+..+   +.++|||.||..||.+|++.+ .+||.|+.++...
T Consensus         6 P~~l~CpIc~~~m~dP---V~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~   56 (78)
T d1t1ha_           6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             CccCCCcCcCchhhCc---eEccCCCcchHHHHHHHHHHCCCCCCcccccCCcc
Confidence            3678999999999866   678999999999999999865 5799999988654

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=3.8e-09  Score=79.25  Aligned_cols=50  Identities=16%  Similarity=0.047  Sum_probs=43.8

Q ss_pred             CCcccccccccccccCCeeEEeCCC-CccChhhHHHHHhcCCCCccccccccCC
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLPCL-HQFHANCIDPWLRQQGTCPVCKLRAGSG  259 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lpCg-H~FH~~CI~~WL~~~~tCPlCR~~i~~~  259 (274)
                      -++..|+||++-+..+   ++++|+ |.|+..||.+||+.+.+||+|+.++...
T Consensus        20 P~~f~CPI~~~lm~dP---V~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~   70 (98)
T d1wgma_          20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             cHHhCCcCchhHHHHH---HhcccccchhhHHHHHHHHHhcCCcccccccccch
Confidence            4578999999999977   788865 5899999999999999999999988654

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=5.4e-08  Score=71.75  Aligned_cols=46  Identities=20%  Similarity=0.491  Sum_probs=36.9

Q ss_pred             cccccccccccccCCeeEEeCCCCccChhhHHHHHhcC--------CCCccccc
Q 024005          209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ--------GTCPVCKL  254 (274)
Q Consensus       209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~--------~tCPlCR~  254 (274)
                      ...|+||++++...+....++|+|.||.+|+..|++.+        -+||.|+.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            34799999999876666667899999999999999632        25998643

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.12  E-value=0.021  Score=36.04  Aligned_cols=44  Identities=27%  Similarity=0.670  Sum_probs=31.2

Q ss_pred             cccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----CCccccc
Q 024005          211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKL  254 (274)
Q Consensus       211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~----tCPlCR~  254 (274)
                      .|.||-..-..++.+..-.|...||..|+.+-+....    .||.||.
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            5889976654444444445899999999988765432    5999975

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.53  E-value=0.087  Score=35.41  Aligned_cols=48  Identities=27%  Similarity=0.645  Sum_probs=33.0

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----CCccccccccC
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLRAGS  258 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~----tCPlCR~~i~~  258 (274)
                      ....|.+|.+.   ++.+..-.|...||..|+.+.+....    .||.|+..-..
T Consensus         6 ~c~~C~~C~~~---~~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~~   57 (70)
T d1fp0a1           6 SATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDL   57 (70)
T ss_dssp             SSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSS
T ss_pred             CCCCCCCCCCc---CEEEECCCCChhhccccCCCCcCcCCCCCEECcCCcCcCcc
Confidence            44467777643   55555555999999999998775433    59999664443

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.71  E-value=0.2  Score=34.82  Aligned_cols=32  Identities=28%  Similarity=0.703  Sum_probs=25.0

Q ss_pred             CCcccccccccccccCCeeEEeC---CCCccChhhHHHH
Q 024005          207 EDELTCTVCLEQVNVGEIVRSLP---CLHQFHANCIDPW  242 (274)
Q Consensus       207 ~e~~~C~ICLe~~~~~~~v~~lp---CgH~FH~~CI~~W  242 (274)
                      ..+..|.|| +.|...+   .+|   |+.+||..|+.+-
T Consensus        13 ~~D~mC~vC-~v~t~~~---l~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          13 VNDEMCDVC-EVWTAES---LFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCSCCCTTT-CCCCSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred             CcCcccccc-Ccccccc---eecceeecchhhHHHHHHh
Confidence            356689999 7777663   345   7899999999986

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.58  E-value=0.073  Score=34.80  Aligned_cols=46  Identities=30%  Similarity=0.708  Sum_probs=32.0

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHHHHHhc----CCCCccccccc
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ----QGTCPVCKLRA  256 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~----~~tCPlCR~~i  256 (274)
                      .+..|.+|.+.   ++.+..-.|.-.||..|+...+..    .-.||.|+.+.
T Consensus         8 ~~~~C~~C~~~---g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~   57 (61)
T d1mm2a_           8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             CcCCCcCCCCC---CeEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCcc
Confidence            44579999753   554445558999999998765543    22699997543

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.62  E-value=0.87  Score=30.29  Aligned_cols=48  Identities=25%  Similarity=0.621  Sum_probs=31.8

Q ss_pred             CcccccccccccccCCeeEEeCCCCccChhhHH----H--HH---hcCCCCccccccc
Q 024005          208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCID----P--WL---RQQGTCPVCKLRA  256 (274)
Q Consensus       208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~----~--WL---~~~~tCPlCR~~i  256 (274)
                      +...| ||......+..+..-.|.--||..|+.    .  ..   ...-.||.|+..-
T Consensus        15 ~~~~C-iC~~~~~~~~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~~   71 (76)
T d1wema_          15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS   71 (76)
T ss_dssp             TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred             CcCEE-ECCCccCCCeEEEECCCCCcCCccccCCCcccccccCCCCCcEECCCCcCcC
Confidence            44457 898776655455555689999999982    1  11   2346899997644