Citrus Sinensis ID: 024019

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270----
Protein Sequence
MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVKISFLSIFYSSCSVSDFTYLRCGIEH
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHccccccHHHHHHHHHHHHHcccccccccccccccHHHcHHHHHHHHccccccccccccccccccccccccccccEEEEEccccccccccccccEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccEHHHHHHHHHHHHcHEEEEEcHHHHHHcccccEEEEEHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHEHHHEcccHHHHHHHHHHHHHHccHHHHccccccccHHHHHHHHHHHHHccccEEEccccccccccEEHHHcccccHHHHHHHHHHHHcccccccEEEEccccc
Coil and Loop (DISEMBL)
mairgvdfkwydgFFLSMLATSVIIVAINWkryhlctypLHIWIVVDYTTVFVFRLLMFVDNglasgmgldlGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGtlwftsardclpeegQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHsiraqqgipvseyGVLLDMIRVPEWAFEAAGQEMRgigqdtaayhpglYLTAAQREAVEALIQELPKfrlkavptdcsecpicleefhvgnevKISFLSIFYsscsvsdftylrcgieh
Flexible Loop (DISEMBL)
MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSiraqqgipvseYGVLLDMIRVPEWAFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVKISFLSIFYSSCSVSDFTYLRCGIEH
Low Complexity Region (SEG)
MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARFCGRvvvlsilslllYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVKISFLSIFYSSCSVSDFTYLRCGIEH
Disordered region (IsUnstruct)
**IRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVKISFLSIFYSSCSVSDFTYLRCGI**
Disordered Region (DISOPRED)
***RGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQ**************YGVLLDMIRVPEWAFEAAGQE*RGIGQDTAAYHPGLYLTAAQREA**ALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVKISFLSIFYSSCSVSDFTYLRCGIE*
Disordered Region (DISEMBL)
MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVKISFLSIFYSSCSVSDFTYLRCGIEH
Disordered Region (DISPRO)
***RGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVKISFLSIFYSSCSVSDFTYLRCGIEH
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVKISFLSIFYSSCSVSDFTYLRCGIEH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	274	2.2.26 [Sep-21-2011]
Q8GYT9	358	E3 ubiquitin-protein liga	yes	no	0.908	0.695	0.819	1e-116

>sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3 PE=2 SV=2

 Score =  419 bits (1077), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/249 (81%), Positives = 225/249 (90%)

Query: 1   MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFV 60
           MA+RGVDFKWYDGFFLSMLATSVIIVA+NW RY  C YPLHIWIVVDYTTVF+FR+ MFV
Sbjct: 1   MAMRGVDFKWYDGFFLSMLATSVIIVAVNWNRYRACEYPLHIWIVVDYTTVFIFRVFMFV 60

Query: 61  DNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEE 120
           DNGLASG+GLD G QQR A FCGRVVVLS+LSLLLYPFLWAWT+IGT WFT ++ CLPEE
Sbjct: 61  DNGLASGLGLDFGSQQRNAMFCGRVVVLSVLSLLLYPFLWAWTVIGTQWFTKSKTCLPEE 120

Query: 121 GQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEW 180
           GQKWGFLIWL+FSYCGLLCIA + +GKWLTRRQ H +RAQQGIP+SE+G+L+DMIRVP+W
Sbjct: 121 GQKWGFLIWLMFSYCGLLCIAFICVGKWLTRRQVHLLRAQQGIPISEFGILVDMIRVPDW 180

Query: 181 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE 240
           AFEAAGQEMRGI QD A YHPGLYLT AQ EAVEALIQELPKFRLKAVP DC EC ICLE
Sbjct: 181 AFEAAGQEMRGISQDAATYHPGLYLTPAQTEAVEALIQELPKFRLKAVPDDCGECLICLE 240

Query: 241 EFHVGNEVK 249
           EFH+G+EV+
Sbjct: 241 EFHIGHEVR 249

E3 ubiquitin protein ligase that acts as positive regulator of sugar signaling during early seedling development. Possesses E3 ligase activity in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
255540693	381	protein binding protein, putative [Ricin	0.908	0.653	0.915	1e-136
356513598	382	PREDICTED: E3 ubiquitin-protein ligase S	0.908	0.651	0.907	1e-134
225457054	381	PREDICTED: E3 ubiquitin-protein ligase S	0.908	0.653	0.927	1e-130
297733794	277	unnamed protein product [Vitis vinifera]	0.905	0.895	0.931	1e-128
356562736	383	PREDICTED: E3 ubiquitin-protein ligase S	0.908	0.650	0.891	1e-126
224133512	333	predicted protein [Populus trichocarpa]	0.908	0.747	0.891	1e-124
219886093	374	unknown [Zea mays]	0.901	0.660	0.851	1e-123
449440682	377	PREDICTED: E3 ubiquitin-protein ligase S	0.908	0.660	0.859	1e-123
357477371	365	RING finger protein [Medicago truncatula	0.846	0.635	0.896	1e-123
115462059	386	Os05g0145000 [Oryza sativa Japonica Grou	0.905	0.642	0.871	1e-122

>gi|255540693|ref|XP_002511411.1| protein binding protein, putative [Ricinus communis] gi|223550526|gb|EEF52013.1| protein binding protein, putative [Ricinus communis]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 228/249 (91%), Positives = 240/249 (96%)

Query: 1   MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFV 60
           MAIRGVDFKWYDGFFLSMLATSV+IVAINWKRYH CTYPLHIWIVVDYTTVFVFRLLMF+
Sbjct: 1   MAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHHCTYPLHIWIVVDYTTVFVFRLLMFI 60

Query: 61  DNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEE 120
           DNGLA+GMGLD GWQQRYARFCGR+ VLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEE
Sbjct: 61  DNGLAAGMGLDFGWQQRYARFCGRIAVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEE 120

Query: 121 GQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEW 180
           GQKWGFLIWL+FSYCGLLCIACM MGKWLTRRQAH +RAQQGIP+SEYGVL+DM+RVP+W
Sbjct: 121 GQKWGFLIWLVFSYCGLLCIACMCMGKWLTRRQAHLLRAQQGIPISEYGVLVDMVRVPDW 180

Query: 181 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE 240
           AFEAAGQEMRG+GQD AAYHPGLYLT  QREAVEALIQELPKFRLK VPTDCSECPICLE
Sbjct: 181 AFEAAGQEMRGMGQDAAAYHPGLYLTPTQREAVEALIQELPKFRLKTVPTDCSECPICLE 240

Query: 241 EFHVGNEVK 249
           EFHVGNEV+
Sbjct: 241 EFHVGNEVR 249

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513598|ref|XP_003525499.1| PREDICTED: E3 ubiquitin-protein ligase SIS3-like [Glycine max]

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/249 (90%), Positives = 239/249 (95%)

Query: 1   MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFV 60
           MAIRGVDFKWYDGFFLSMLATSV+IVAINWKRYH CTYPLHIWIVVDYTTVFVFRLLMFV
Sbjct: 1   MAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHSCTYPLHIWIVVDYTTVFVFRLLMFV 60

Query: 61  DNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEE 120
           DNGLA+GMGLD GWQQRYARFCGRVVV SIL LLLYPFLWAWT+IGTLWF+SA++CLPE 
Sbjct: 61  DNGLAAGMGLDFGWQQRYARFCGRVVVFSILVLLLYPFLWAWTVIGTLWFSSAKNCLPEV 120

Query: 121 GQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEW 180
           G KWGFLIWLLFSYCGLLCIACMS+GKWLTRRQAH +RAQQGIPVSEYGVL+DMIRVP+W
Sbjct: 121 GTKWGFLIWLLFSYCGLLCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDW 180

Query: 181 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE 240
           AFEAAGQE RG+GQD AAYHPGLYLT AQREAVEALIQELPKFRLKAVPTDCSECPICLE
Sbjct: 181 AFEAAGQETRGMGQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLE 240

Query: 241 EFHVGNEVK 249
           EF+VGNEV+
Sbjct: 241 EFYVGNEVR 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457054|ref|XP_002282957.1| PREDICTED: E3 ubiquitin-protein ligase SIS3 [Vitis vinifera]

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/249 (92%), Positives = 241/249 (96%)

Query: 1   MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFV 60
           MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRY LCTYPLHIWI+VDYTTVFVFRLLMFV
Sbjct: 1   MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYDLCTYPLHIWIMVDYTTVFVFRLLMFV 60

Query: 61  DNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEE 120
           DNGLA+GMGLD GWQQRYARFCGR+VVLSILSLLLYPFLWAWT+IGTLWFT ARDCLPEE
Sbjct: 61  DNGLAAGMGLDFGWQQRYARFCGRIVVLSILSLLLYPFLWAWTVIGTLWFTRARDCLPEE 120

Query: 121 GQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEW 180
           GQKWGFLIWLLFSYCGLLCIACMSMGKW +RRQAH +RAQQGIPVSEYGVL+DMIRVP+W
Sbjct: 121 GQKWGFLIWLLFSYCGLLCIACMSMGKWFSRRQAHLLRAQQGIPVSEYGVLVDMIRVPDW 180

Query: 181 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE 240
           AFEAAGQEMRG+GQD AAYHPGLYLT  QREAVEALIQELPKFRLKAVPTDCSECPICLE
Sbjct: 181 AFEAAGQEMRGMGQDAAAYHPGLYLTPTQREAVEALIQELPKFRLKAVPTDCSECPICLE 240

Query: 241 EFHVGNEVK 249
           EFHVGNEV+
Sbjct: 241 EFHVGNEVR 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733794|emb|CBI15041.3| unnamed protein product [Vitis vinifera]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 231/248 (93%), Positives = 240/248 (96%)

Query: 1   MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFV 60
           MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRY LCTYPLHIWI+VDYTTVFVFRLLMFV
Sbjct: 1   MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYDLCTYPLHIWIMVDYTTVFVFRLLMFV 60

Query: 61  DNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEE 120
           DNGLA+GMGLD GWQQRYARFCGR+VVLSILSLLLYPFLWAWT+IGTLWFT ARDCLPEE
Sbjct: 61  DNGLAAGMGLDFGWQQRYARFCGRIVVLSILSLLLYPFLWAWTVIGTLWFTRARDCLPEE 120

Query: 121 GQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEW 180
           GQKWGFLIWLLFSYCGLLCIACMSMGKW +RRQAH +RAQQGIPVSEYGVL+DMIRVP+W
Sbjct: 121 GQKWGFLIWLLFSYCGLLCIACMSMGKWFSRRQAHLLRAQQGIPVSEYGVLVDMIRVPDW 180

Query: 181 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE 240
           AFEAAGQEMRG+GQD AAYHPGLYLT  QREAVEALIQELPKFRLKAVPTDCSECPICLE
Sbjct: 181 AFEAAGQEMRGMGQDAAAYHPGLYLTPTQREAVEALIQELPKFRLKAVPTDCSECPICLE 240

Query: 241 EFHVGNEV 248
           EFHVGNEV
Sbjct: 241 EFHVGNEV 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562736|ref|XP_003549625.1| PREDICTED: E3 ubiquitin-protein ligase SIS3-like [Glycine max]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/249 (89%), Positives = 238/249 (95%)

Query: 1   MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFV 60
           MAIRGVDFKWYDGFFL MLATSV+IVAINWKRYH CTYPLHIWIVVDYTTVFVFR+LMFV
Sbjct: 1   MAIRGVDFKWYDGFFLFMLATSVVIVAINWKRYHSCTYPLHIWIVVDYTTVFVFRVLMFV 60

Query: 61  DNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEE 120
           DNGL++GMGLD GWQQRYARFCGRVVVLSIL LLLYPFLWAWT+IGTLWF+SA++CLPE 
Sbjct: 61  DNGLSAGMGLDFGWQQRYARFCGRVVVLSILVLLLYPFLWAWTVIGTLWFSSAKNCLPEV 120

Query: 121 GQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEW 180
           G+KWGFLIWLLFSYCGL CIACMS+GKWLTRRQAH +RAQQGIPVSEYGVL+DMIRVP+W
Sbjct: 121 GKKWGFLIWLLFSYCGLFCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDW 180

Query: 181 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE 240
           AFEAAGQE RG+GQD AAYHPGLYLT AQREAVEALI ELPKFRLKAVPTDCSECPICLE
Sbjct: 181 AFEAAGQETRGMGQDAAAYHPGLYLTPAQREAVEALILELPKFRLKAVPTDCSECPICLE 240

Query: 241 EFHVGNEVK 249
           EF+VGNEV+
Sbjct: 241 EFYVGNEVR 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133512|ref|XP_002321588.1| predicted protein [Populus trichocarpa] gi|222868584|gb|EEF05715.1| predicted protein [Populus trichocarpa]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/249 (89%), Positives = 238/249 (95%)

Query: 1   MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFV 60
           MAIRGVDFKWYDGFFLSMLATS IIVAINWKRY LCTYPLHIWI+VDYTTVFVFRLLMF+
Sbjct: 1   MAIRGVDFKWYDGFFLSMLATSAIIVAINWKRYRLCTYPLHIWIMVDYTTVFVFRLLMFI 60

Query: 61  DNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEE 120
           DNGLA+GMGLD GWQQRYARFCGR+VVLSILSLLLYPFLWAWTIIGTLWFT+ARDCLPEE
Sbjct: 61  DNGLAAGMGLDFGWQQRYARFCGRIVVLSILSLLLYPFLWAWTIIGTLWFTNARDCLPEE 120

Query: 121 GQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEW 180
           GQKWGFLIWLLFSYCGL+ IAC+S+GKW  RRQAH +RAQQGIP+SEYGVL+D+IRVP+W
Sbjct: 121 GQKWGFLIWLLFSYCGLIGIACISVGKWWVRRQAHHLRAQQGIPISEYGVLVDLIRVPDW 180

Query: 181 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE 240
           AFEAAGQEMRG+GQD AAY PGLYLT  QREAVEALIQELPKFRLKAVPTDCSECPICLE
Sbjct: 181 AFEAAGQEMRGMGQDAAAYQPGLYLTPTQREAVEALIQELPKFRLKAVPTDCSECPICLE 240

Query: 241 EFHVGNEVK 249
           EF+VGNEV+
Sbjct: 241 EFYVGNEVR 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219886093|gb|ACL53421.1| unknown [Zea mays]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/249 (85%), Positives = 231/249 (92%), Gaps = 2/249 (0%)

Query: 1   MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFV 60
           M +RGVDFKWYDGFFLSMLATSVIIV+INWKRY LC +PLHIWIVVDYTTVF+FRLLMFV
Sbjct: 1   MPMRGVDFKWYDGFFLSMLATSVIIVSINWKRYRLCAHPLHIWIVVDYTTVFIFRLLMFV 60

Query: 61  DNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEE 120
           DNGLA+GMGLDLGWQQRYARFCGR++VLS+L  LLYPFLW WT+IGTLWF++AR CLPEE
Sbjct: 61  DNGLAAGMGLDLGWQQRYARFCGRIIVLSVLVPLLYPFLWVWTVIGTLWFSTARGCLPEE 120

Query: 121 GQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEW 180
           GQKWGFLIWLLFSYCGL CIAC+++GKWL RR A   RAQQGIPVSE+GVL+DMIRVP+W
Sbjct: 121 GQKWGFLIWLLFSYCGLACIACVAIGKWLHRRHALQQRAQQGIPVSEHGVLVDMIRVPDW 180

Query: 181 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE 240
           AFEA G EMR +GQDT AYHPGLYLT AQREAVEALIQELPKFRLKAVPTDCSECPICLE
Sbjct: 181 AFEAVGLEMR-VGQDT-AYHPGLYLTDAQREAVEALIQELPKFRLKAVPTDCSECPICLE 238

Query: 241 EFHVGNEVK 249
           EFHVGNEV+
Sbjct: 239 EFHVGNEVR 247

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440682|ref|XP_004138113.1| PREDICTED: E3 ubiquitin-protein ligase SIS3-like [Cucumis sativus] gi|449518937|ref|XP_004166492.1| PREDICTED: E3 ubiquitin-protein ligase SIS3-like [Cucumis sativus]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/249 (85%), Positives = 232/249 (93%)

Query: 1   MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFV 60
           MA RGVDFKWYDGFFLSMLATSV+IV+INWKRYH C +PLHIWIVVDYTTVFVFRLLMFV
Sbjct: 1   MAARGVDFKWYDGFFLSMLATSVVIVSINWKRYHTCVHPLHIWIVVDYTTVFVFRLLMFV 60

Query: 61  DNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEE 120
           DNGLA+GMGLD GWQQRYARFCGR+VVLS+L++LLYPFLWAWT IGT+WF  A  CLPE+
Sbjct: 61  DNGLAAGMGLDFGWQQRYARFCGRIVVLSVLAVLLYPFLWAWTAIGTIWFREAHKCLPEQ 120

Query: 121 GQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEW 180
           GQKWGFLIWLLFSYC L+CIACMS+GKWLTRRQA   RAQQGIPVSEYGVL+DM+RVP+W
Sbjct: 121 GQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMVRVPDW 180

Query: 181 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE 240
           AFEAAGQE R +GQD AAYHPGLYLT AQREAVEALI+ELPKFRLKAVPTDCSECPICLE
Sbjct: 181 AFEAAGQETRVMGQDAAAYHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLE 240

Query: 241 EFHVGNEVK 249
           EFHVGNEV+
Sbjct: 241 EFHVGNEVR 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477371|ref|XP_003608971.1| RING finger protein [Medicago truncatula] gi|355510026|gb|AES91168.1| RING finger protein [Medicago truncatula]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/232 (89%), Positives = 222/232 (95%)

Query: 18  MLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQR 77
           MLATSV+IVAINWKRYH CTYPLHIWIVVDYT VFVFRLLMFVDNG A+GMGLD GWQQR
Sbjct: 1   MLATSVVIVAINWKRYHSCTYPLHIWIVVDYTAVFVFRLLMFVDNGFAAGMGLDFGWQQR 60

Query: 78  YARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEEGQKWGFLIWLLFSYCGL 137
           YARFCGRVVVLSIL LLLYPFLWAWTIIGT+WF+SA+ CLPEEGQKWGFLIWLLFSYCGL
Sbjct: 61  YARFCGRVVVLSILGLLLYPFLWAWTIIGTMWFSSAKSCLPEEGQKWGFLIWLLFSYCGL 120

Query: 138 LCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEWAFEAAGQEMRGIGQDTA 197
           LCIACMS+GKWLTRRQAH +RAQQGIP+SEYG+L+DMIRVP+WAFEAAGQE RG+GQDTA
Sbjct: 121 LCIACMSVGKWLTRRQAHLVRAQQGIPLSEYGILVDMIRVPDWAFEAAGQETRGMGQDTA 180

Query: 198 AYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVK 249
           +YHPGLYLT AQREAVEALIQELPKFRLKAVPTDCSECPICLEEF VGNEV+
Sbjct: 181 SYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFRVGNEVR 232

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115462059|ref|NP_001054629.1| Os05g0145000 [Oryza sativa Japonica Group] gi|51038194|gb|AAT93997.1| unknow protein [Oryza sativa Japonica Group] gi|113578180|dbj|BAF16543.1| Os05g0145000 [Oryza sativa Japonica Group] gi|215706903|dbj|BAG93363.1| unnamed protein product [Oryza sativa Japonica Group] gi|222630174|gb|EEE62306.1| hypothetical protein OsJ_17095 [Oryza sativa Japonica Group]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/249 (87%), Positives = 236/249 (94%), Gaps = 1/249 (0%)

Query: 1   MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFV 60
           MA+RGVDFKWYDGFFLSMLATS+IIV+INWKRY LC +PLHIWIVVDYTTVF+FRLLMFV
Sbjct: 1   MAMRGVDFKWYDGFFLSMLATSLIIVSINWKRYRLCAHPLHIWIVVDYTTVFIFRLLMFV 60

Query: 61  DNGLASGMGLDLGWQQRYARFCGRVVVLSILSLLLYPFLWAWTIIGTLWFTSARDCLPEE 120
           DNGLA+GMGLDLGWQQRYARFCGR+VVLS+L LLLYPFLW WT+IGTLWF++AR CLPEE
Sbjct: 61  DNGLAAGMGLDLGWQQRYARFCGRIVVLSVLVLLLYPFLWVWTVIGTLWFSTARGCLPEE 120

Query: 121 GQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEW 180
           GQKWGFLIWLLFSYCGL CIAC+++GKWL+RR A   RAQQGIPVSEYGVL+DMIRVP+W
Sbjct: 121 GQKWGFLIWLLFSYCGLACIACVAVGKWLSRRHALQQRAQQGIPVSEYGVLVDMIRVPDW 180

Query: 181 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE 240
           AFEA G EMRG+GQDT AYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE
Sbjct: 181 AFEAVGLEMRGMGQDT-AYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE 239

Query: 241 EFHVGNEVK 249
           EFHVGNEV+
Sbjct: 240 EFHVGNEVR 248

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	274
TAIR|locus:2097830	358	SIS3 "SUGAR-INSENSITIVE 3" [Ar	0.908	0.695	0.779	8.7e-111
GENEDB_PFALCIPARUM|PF10_0276	274	PF10_0276 "hypothetical protei	0.412	0.412	0.256	2.5e-10
UNIPROTKB|Q8IJC2	274	PF10_0276 "Zinc finger, C3HC4	0.412	0.412	0.256	2.5e-10

TAIR|locus:2097830 SIS3 "SUGAR-INSENSITIVE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
 Identities = 194/249 (77%), Positives = 214/249 (85%)

Query:     1 MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFV 60
             MA+RGVDFKWYDGFFLSMLATSVIIVA+NW RY  C YPLHIWIVVDYTTVF+FR+ MFV
Sbjct:     1 MAMRGVDFKWYDGFFLSMLATSVIIVAVNWNRYRACEYPLHIWIVVDYTTVFIFRVFMFV 60

Query:    61 DNGLASGMGLDLGWQQRYARFCGRXXXXXXXXXXXYPFLWAWTIIGTLWFTSARDCLPEE 120
             DNGLASG+GLD G QQR A FCGR           YPFLWAWT+IGT WFT ++ CLPEE
Sbjct:    61 DNGLASGLGLDFGSQQRNAMFCGRVVVLSVLSLLLYPFLWAWTVIGTQWFTKSKTCLPEE 120

Query:   121 GQKWGFLIWLLFSYCGLLCIACMSMGKWLTRRQAHSIRAQQGIPVSEYGVLLDMIRVPEW 180
             GQKWGFLIWL+FSYCGLLCIA + +GKWLTRRQ H +RAQQGIP+SE+G+L+DMIRVP+W
Sbjct:   121 GQKWGFLIWLMFSYCGLLCIAFICVGKWLTRRQVHLLRAQQGIPISEFGILVDMIRVPDW 180

Query:   181 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLE 240
             AFEAAGQEMRGI QD A YHPGLYLT AQ EAVEALIQELPKFRLKAVP DC EC ICLE
Sbjct:   181 AFEAAGQEMRGISQDAATYHPGLYLTPAQTEAVEALIQELPKFRLKAVPDDCGECLICLE 240

Query:   241 EFHVGNEVK 249
             EFH+G+EV+
Sbjct:   241 EFHIGHEVR 249

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0010182 "sugar mediated signaling pathway" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GENEDB_PFALCIPARUM|PF10_0276 PF10_0276 "hypothetical protein" [Plasmodium falciparum (taxid:5833)]

 Score = 136 (52.9 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
 Identities = 31/121 (25%), Positives = 52/121 (42%)

Query:    22 SVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARF 81
             SV  + + W  +  C  P+ +W+VV + ++ ++RL  F    LA  +  D      Y R 
Sbjct:    28 SVGDIFVQWNEFSKCYKPIQLWLVVSFISIVLYRLSHF----LAQYLSNDNDDFIIYRRN 83

Query:    82 CGRXXXXXXXXXXXYPFLWAWTIIGTLWFTS----ARDCLPEEGQKWGFLIWLLFSYCGL 137
                           +PF + W IIGT+W         +CLP     W  ++W++  Y  +
Sbjct:    84 NPPYYISFLVLFILFPFFFIWNIIGTIWIYQIIKYTPNCLPRNNHPWFIVLWIVLCYIWI 143

Query:   138 L 138
             L
Sbjct:   144 L 144

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IJC2 PF10_0276 "Zinc finger, C3HC4 type, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 136 (52.9 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
 Identities = 31/121 (25%), Positives = 52/121 (42%)

Query:    22 SVIIVAINWKRYHLCTYPLHIWIVVDYTTVFVFRLLMFVDNGLASGMGLDLGWQQRYARF 81
             SV  + + W  +  C  P+ +W+VV + ++ ++RL  F    LA  +  D      Y R 
Sbjct:    28 SVGDIFVQWNEFSKCYKPIQLWLVVSFISIVLYRLSHF----LAQYLSNDNDDFIIYRRN 83

Query:    82 CGRXXXXXXXXXXXYPFLWAWTIIGTLWFTS----ARDCLPEEGQKWGFLIWLLFSYCGL 137
                           +PF + W IIGT+W         +CLP     W  ++W++  Y  +
Sbjct:    84 NPPYYISFLVLFILFPFFFIWNIIGTIWIYQIIKYTPNCLPRNNHPWFIVLWIVLCYIWI 143

Query:   138 L 138
             L
Sbjct:   144 L 144

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GYT9	SIS3_ARATH	6, ., 3, ., 2, ., -	0.8192	0.9087	0.6955	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	274
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.55
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.51
PHA02929	238	N1R/p28-like protein; Provisional	98.01
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.01
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.61
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	97.07
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	96.88
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	96.37
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	95.86
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	95.67
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	95.61
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	95.27
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	95.05
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	93.98
PF14634	44	zf-RING_5: zinc-RING finger domain	92.97
PHA02926	242	zinc finger-like protein; Provisional	90.84
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	89.17
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	86.03
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	84.67
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	84.4
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	83.61
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	83.31
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	82.0

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=1e-14  Score=139.01  Aligned_cols=61  Identities=25%  Similarity=0.419  Sum_probs=54.1

Q ss_pred             HHHHHHhcCCceeeecCCCCC--cccccccccccccceeeecccC-cCCcCCcccccccccC-CC
Q 024019          212 AVEALIQELPKFRLKAVPTDC--SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRC-GI  272 (274)
Q Consensus       212 avEa~IqaLP~~~~t~~~~d~--~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~-~~  272 (274)
                      +.|++++++|..+++...++.  ..|+||||||++||.+|.|||. .||..|||||++++|. ||
T Consensus       207 ~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CP  271 (348)
T KOG4628|consen  207 LIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCP  271 (348)
T ss_pred             hHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCC
Confidence            456789999999998765432  3899999999999999999999 9999999999999987 88

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.51  E-value=9.2e-09  Score=69.87  Aligned_cols=39  Identities=36%  Similarity=0.524  Sum_probs=36.2

Q ss_pred             ccccccccccccceeeecccC-cCCcCCcccccccccCCC
Q 024019          234 ECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGI  272 (274)
Q Consensus       234 eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~  272 (274)
                      +|+||+++|++++.+..|||- .||.+|+..|++.++.||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP   41 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCP   41 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-T
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCC
Confidence            699999999999999999955 999999999999999998

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.01  E-value=1.8e-06  Score=79.20  Aligned_cols=61  Identities=15%  Similarity=0.147  Sum_probs=47.7

Q ss_pred             HHHHHhcCCceeeecCC----CCCcccccccccccccce----eeecccC--cCCcCCcccccccccCCCC
Q 024019          213 VEALIQELPKFRLKAVP----TDCSECPICLEEFHVGNE----VKISFLS--IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       213 vEa~IqaLP~~~~t~~~----~d~~eCsICLedFe~GEe----vR~LPcC--~FH~~CI~~w~~~~~~~~~  273 (274)
                      .+++|+++|.+....+.    .+..+|+||++++.+.+.    +..+|.|  .||.+||..|++....||-
T Consensus       151 ~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPl  221 (238)
T PHA02929        151 YKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPV  221 (238)
T ss_pred             hHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCC
Confidence            67899999999755332    234799999999887652    3456656  9999999999999999984

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=1.7e-06  Score=82.93  Aligned_cols=40  Identities=20%  Similarity=0.370  Sum_probs=37.0

Q ss_pred             cccccccccccccceeeecccC-cCCcCCcccccc-cccCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFT-YLRCGI  272 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~-~~~~~~  272 (274)
                      .+|+||+++|-.||.++.|||. .||.+|++.|+- |--.||
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CP  365 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCP  365 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCC
Confidence            7999999999999999999988 999999999987 766676

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.61  E-value=9.6e-06  Score=61.42  Aligned_cols=40  Identities=18%  Similarity=0.195  Sum_probs=30.5

Q ss_pred             cccccccccccc----------cceeeecccC-cCCcCCcccccccccCCC
Q 024019          233 SECPICLEEFHV----------GNEVKISFLS-IFYSSCSVSDFTYLRCGI  272 (274)
Q Consensus       233 ~eCsICLedFe~----------GEevR~LPcC-~FH~~CI~~w~~~~~~~~  272 (274)
                      ..|+||++++.+          +-.+...+|- .||..||..|++.++.||
T Consensus        20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP   70 (73)
T PF12678_consen   20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCP   70 (73)
T ss_dssp             SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-T
T ss_pred             CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCC
Confidence            359999999932          2344445655 999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.00018  Score=64.33  Aligned_cols=29  Identities=31%  Similarity=0.582  Sum_probs=25.7

Q ss_pred             CCcccccccccccccceeeecccC-cCCcC
Q 024019          231 DCSECPICLEEFHVGNEVKISFLS-IFYSS  259 (274)
Q Consensus       231 d~~eCsICLedFe~GEevR~LPcC-~FH~~  259 (274)
                      ++.||.|||||.+.||++.+|||- .||+.
T Consensus       176 dkGECvICLEdL~~GdtIARLPCLCIYHK~  205 (205)
T KOG0801|consen  176 DKGECVICLEDLEAGDTIARLPCLCIYHKQ  205 (205)
T ss_pred             cCCcEEEEhhhccCCCceeccceEEEeecC
Confidence            347999999999999999999975 99973

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=96.88  E-value=0.00025  Score=45.43  Aligned_cols=38  Identities=34%  Similarity=0.502  Sum_probs=30.6

Q ss_pred             ccccccccccccceeeecccC-cCCcCCccccccc-ccCCCC
Q 024019          234 ECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTY-LRCGIE  273 (274)
Q Consensus       234 eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~-~~~~~~  273 (274)
                      +|+||++++  .+.+...||- .||.+|+..|++. ++.||.
T Consensus         1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~   40 (45)
T cd00162           1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPL   40 (45)
T ss_pred             CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCC
Confidence            599999998  4555566655 9999999999998 777874

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.00056  Score=68.33  Aligned_cols=41  Identities=37%  Similarity=0.434  Sum_probs=38.5

Q ss_pred             Ccccccccccccccce--eeecccC-cCCcCCcccccccccCCC
Q 024019          232 CSECPICLEEFHVGNE--VKISFLS-IFYSSCSVSDFTYLRCGI  272 (274)
Q Consensus       232 ~~eCsICLedFe~GEe--vR~LPcC-~FH~~CI~~w~~~~~~~~  272 (274)
                      +..|+||.|+...|+.  .++|||- .||.+|+-.|+++...||
T Consensus       291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP  334 (543)
T KOG0802|consen  291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCP  334 (543)
T ss_pred             CCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCC
Confidence            3689999999999988  9999988 999999999999999998

>smart00184 RING Ring finger

Probab=95.86  E-value=0.0016  Score=40.10  Aligned_cols=36  Identities=28%  Similarity=0.331  Sum_probs=29.2

Q ss_pred             cccccccccccceeeecccC-cCCcCCcccccc-cccCCCC
Q 024019          235 CPICLEEFHVGNEVKISFLS-IFYSSCSVSDFT-YLRCGIE  273 (274)
Q Consensus       235 CsICLedFe~GEevR~LPcC-~FH~~CI~~w~~-~~~~~~~  273 (274)
                      |+||++.   .+....+||. .||.+|+..|++ ....||.
T Consensus         1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~   38 (39)
T smart00184        1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPI   38 (39)
T ss_pred             CCcCccC---CCCcEEecCCChHHHHHHHHHHHhCcCCCCC
Confidence            7899888   5568888977 999999999998 4455764

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=95.67  E-value=0.0033  Score=62.26  Aligned_cols=61  Identities=21%  Similarity=0.270  Sum_probs=48.4

Q ss_pred             HHHHHHhcCCceeeecCCCCCccccccccc-ccccce---------eeecccC-cCCcCCcccccccccCCC
Q 024019          212 AVEALIQELPKFRLKAVPTDCSECPICLEE-FHVGNE---------VKISFLS-IFYSSCSVSDFTYLRCGI  272 (274)
Q Consensus       212 avEa~IqaLP~~~~t~~~~d~~eCsICLed-Fe~GEe---------vR~LPcC-~FH~~CI~~w~~~~~~~~  272 (274)
                      +-|++=+.+|+++..+-..++..|.||.+| |+.+.+         -++|||- .+|.+|..-|.|--..||
T Consensus       267 ~~kdl~~~~~t~t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCP  338 (491)
T COG5243         267 ATKDLNAMYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCP  338 (491)
T ss_pred             HhhHHHhhcchhhhhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCC
Confidence            344555667777776655566899999999 887733         4899977 999999999999988887

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.61  E-value=0.07  Score=51.22  Aligned_cols=35  Identities=17%  Similarity=0.236  Sum_probs=30.2

Q ss_pred             CCcccccccccccccc-------eeeecccC-cCCcCCccccc
Q 024019          231 DCSECPICLEEFHVGN-------EVKISFLS-IFYSSCSVSDF  265 (274)
Q Consensus       231 d~~eCsICLedFe~GE-------evR~LPcC-~FH~~CI~~w~  265 (274)
                      +++-|+||.+.+.+.+       ..-+|-|. .||..||--|-
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWc  265 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWC  265 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhhe
Confidence            3478999999998776       78899988 99999999884

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=95.27  E-value=0.0032  Score=44.82  Aligned_cols=38  Identities=13%  Similarity=0.041  Sum_probs=29.0

Q ss_pred             ccccccccccccceeeecccC------cCCcCCccccccccc--CCC
Q 024019          234 ECPICLEEFHVGNEVKISFLS------IFYSSCSVSDFTYLR--CGI  272 (274)
Q Consensus       234 eCsICLedFe~GEevR~LPcC------~FH~~CI~~w~~~~~--~~~  272 (274)
                      .|.||++ ++++++....||.      .+|.+|+..|+...+  .||
T Consensus         1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~   46 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCE   46 (49)
T ss_pred             CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCC
Confidence            3899998 5555666689974      599999999996554  554

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=95.05  E-value=0.0042  Score=41.30  Aligned_cols=37  Identities=24%  Similarity=0.381  Sum_probs=30.0

Q ss_pred             cccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019          235 CPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       235 CsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      |+||++++.+  .+..+||- .|..+|+..|++.+..||.
T Consensus         1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~   38 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPV   38 (39)
T ss_dssp             ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TT
T ss_pred             CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcC
Confidence            8999998887  55678766 9999999999999888873

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.98  E-value=0.0098  Score=39.25  Aligned_cols=36  Identities=25%  Similarity=0.277  Sum_probs=29.7

Q ss_pred             cccccccccccceeeecccC-cCCcCCcccccc--cccCCC
Q 024019          235 CPICLEEFHVGNEVKISFLS-IFYSSCSVSDFT--YLRCGI  272 (274)
Q Consensus       235 CsICLedFe~GEevR~LPcC-~FH~~CI~~w~~--~~~~~~  272 (274)
                      |+||++.+++..  +.+||- .|+.+|+..|++  ....||
T Consensus         1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP   39 (41)
T PF00097_consen    1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCP   39 (41)
T ss_dssp             ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTT
T ss_pred             CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCC
Confidence            899999988865  778866 999999999998  455555

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=92.97  E-value=0.032  Score=38.11  Aligned_cols=39  Identities=18%  Similarity=0.293  Sum_probs=33.0

Q ss_pred             ccccccccccccceeeecccC-cCCcCCcccccccccCCC
Q 024019          234 ECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGI  272 (274)
Q Consensus       234 eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~  272 (274)
                      +|+||.++|.+.+..+.++|- .|..+|+....+....||
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP   40 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCP   40 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCc
Confidence            599999999777788889877 999999998886666666

>PHA02926 zinc finger-like protein; Provisional

Probab=90.84  E-value=0.068  Score=49.88  Aligned_cols=42  Identities=19%  Similarity=0.108  Sum_probs=30.7

Q ss_pred             Cccccccccccccc----c-eeeecccC--cCCcCCccccccc------ccCCCC
Q 024019          232 CSECPICLEEFHVG----N-EVKISFLS--IFYSSCSVSDFTY------LRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~G----E-evR~LPcC--~FH~~CI~~w~~~------~~~~~~  273 (274)
                      +.+|+||+|.--+.    | .--.||.|  .|..+||..|.+.      .|.||.
T Consensus       170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPi  224 (242)
T PHA02926        170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPI  224 (242)
T ss_pred             CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCC
Confidence            37999999886432    2 12357667  9999999999974      366885

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=89.17  E-value=0.56  Score=35.88  Aligned_cols=29  Identities=14%  Similarity=0.300  Sum_probs=25.1

Q ss_pred             cccccccccccccceeeecccC-cCCcCCcc
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSV  262 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~  262 (274)
                      ..|++|-+.+.. ...-..|+. .||..|+.
T Consensus        79 ~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   79 TKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence            579999999987 677788988 99999974

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=86.03  E-value=0.21  Score=37.71  Aligned_cols=37  Identities=24%  Similarity=0.205  Sum_probs=18.2

Q ss_pred             cccccccccccccceeeec----ccC--cCCcCCccccccccc
Q 024019          233 SECPICLEEFHVGNEVKIS----FLS--IFYSSCSVSDFTYLR  269 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~L----PcC--~FH~~CI~~w~~~~~  269 (274)
                      .+|.||-+...++++.-.+    |.|  .||..|.-.||..++
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~   45 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLE   45 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHH
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcc
Confidence            5899998887644433222    245  999999999997543

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=84.67  E-value=0.39  Score=35.74  Aligned_cols=31  Identities=19%  Similarity=0.584  Sum_probs=28.1

Q ss_pred             cccccccccccccceeeecccC--cCCcCCccc
Q 024019          233 SECPICLEEFHVGNEVKISFLS--IFYSSCSVS  263 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC--~FH~~CI~~  263 (274)
                      ..|++|-+.|++||.+-+=|-|  .+|.+|-+.
T Consensus         6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            5799999999999999999999  999999654

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=84.40  E-value=0.23  Score=39.86  Aligned_cols=38  Identities=18%  Similarity=0.296  Sum_probs=26.3

Q ss_pred             ccccccccccc--------cccee-eecccC--cCCcCCcccccccccC
Q 024019          233 SECPICLEEFH--------VGNEV-KISFLS--IFYSSCSVSDFTYLRC  270 (274)
Q Consensus       233 ~eCsICLedFe--------~GEev-R~LPcC--~FH~~CI~~w~~~~~~  270 (274)
                      ..|.||-..|+        .||.- ..+-.|  .||..||..|++..++
T Consensus        22 d~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~   70 (85)
T PF12861_consen   22 DVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSS   70 (85)
T ss_pred             CceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccC
Confidence            46888877777        35442 122345  9999999999997543

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=83.61  E-value=0.2  Score=34.78  Aligned_cols=37  Identities=24%  Similarity=0.415  Sum_probs=30.5

Q ss_pred             cccccccccccccceeeecccC-c-CCcCCcccccccccCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-I-FYSSCSVSDFTYLRCGI  272 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~-FH~~CI~~w~~~~~~~~  272 (274)
                      .+|+||++...+   +..+||- . |..+|...|....+.||
T Consensus         3 ~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP   41 (50)
T PF13920_consen    3 EECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCP   41 (50)
T ss_dssp             SB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBT
T ss_pred             CCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCC
Confidence            589999998765   7788977 5 99999999998888777

...

>TIGR00599 rad18 DNA repair protein rad18

Probab=83.31  E-value=0.44  Score=47.18  Aligned_cols=39  Identities=26%  Similarity=0.314  Sum_probs=32.4

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      ...|+||++.|..  .+ .+||. .|...||..|++..+.||.
T Consensus        26 ~l~C~IC~d~~~~--Pv-itpCgH~FCs~CI~~~l~~~~~CP~   65 (397)
T TIGR00599        26 SLRCHICKDFFDV--PV-LTSCSHTFCSLCIRRCLSNQPKCPL   65 (397)
T ss_pred             ccCCCcCchhhhC--cc-CCCCCCchhHHHHHHHHhCCCCCCC
Confidence            3789999998864  33 67877 9999999999998888884

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00504 Ubox Modified RING finger domain

Probab=82.00  E-value=0.41  Score=33.71  Aligned_cols=37  Identities=19%  Similarity=0.064  Sum_probs=30.5

Q ss_pred             cccccccccccccceeeecccC-cCCcCCcccccccccCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGI  272 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~  272 (274)
                      ..|+||++-+++-  | .+|+. .|-.+||..|+..+..||
T Consensus         2 ~~Cpi~~~~~~~P--v-~~~~G~v~~~~~i~~~~~~~~~cP   39 (63)
T smart00504        2 FLCPISLEVMKDP--V-ILPSGQTYERRAIEKWLLSHGTDP   39 (63)
T ss_pred             cCCcCCCCcCCCC--E-ECCCCCEEeHHHHHHHHHHCCCCC
Confidence            3699999998863  3 56877 999999999998777777

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	274
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	7e-05
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	3e-04

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 3/42 (7%)

Query: 212 AVEALIQELPKFRLKA---VPTDCSECPICLEEFHVGNEVKI 250
           A +  I  LP+  +            CPIC  E+  G+    
Sbjct: 17  ASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATE 58

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 6/41 (14%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 212 AVEALIQELPKFRLKAV--PTDCSECPICLEEFHVGNEVKI 250
                  +LP +R       ++ + C +C+ +F     +++
Sbjct: 1   GSSGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRV 41

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	274
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.12
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.06
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.73
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.47
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.39
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.39
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.37
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.23
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.22
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.15
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.11
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.09
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	97.92
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	97.9
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	97.8
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	97.77
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	97.73
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	97.59
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	97.53
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	97.48
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	97.45
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	97.33
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	97.28
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	97.19
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	97.17
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.06
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	97.01
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	96.98
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	96.98
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	96.97
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	96.92
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	96.89
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	96.85
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	96.75
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	96.75
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	96.72
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	96.66
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	96.54
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	96.5
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	96.32
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	96.13
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	96.08
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	95.99
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	95.94
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	95.92
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	95.5
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	95.39
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	95.15
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	94.97
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	94.97
1z6u_A	150	NP95-like ring finger protein isoform B; structura	94.61
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	93.37
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	93.14
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	92.91
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	90.12
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	89.8
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	89.09
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	87.98
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	84.09
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	83.95
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	83.07
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	82.55
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	82.49
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	82.36
2ea5_A	68	Cell growth regulator with ring finger domain prot	80.12

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.12  E-value=4.8e-12  Score=95.77  Aligned_cols=62  Identities=19%  Similarity=0.213  Sum_probs=53.7

Q ss_pred             HHHHHHhcCCceeeecCCC---CCcccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019          212 AVEALIQELPKFRLKAVPT---DCSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       212 avEa~IqaLP~~~~t~~~~---d~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      ++++.|++||.+++++...   +..+|+||+++|+.|+.++.|||- .||.+||..|+..++.||-
T Consensus        17 ~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~   82 (91)
T 2l0b_A           17 ASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPV   82 (91)
T ss_dssp             CCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTT
T ss_pred             CCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcC
Confidence            4556899999999986532   336899999999999999999966 9999999999999999983

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=7.7e-12  Score=90.55  Aligned_cols=59  Identities=15%  Similarity=0.285  Sum_probs=51.3

Q ss_pred             HHHhcCCceeeecCC--CCCcccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019          215 ALIQELPKFRLKAVP--TDCSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       215 a~IqaLP~~~~t~~~--~d~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      +.|++||.++++...  .+..+|+||+++|+.++.++.|||- .||.+||..|+..+..||-
T Consensus         4 ~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~   65 (75)
T 1x4j_A            4 GSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPI   65 (75)
T ss_dssp             CCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTT
T ss_pred             hhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcC
Confidence            457899999997653  2347899999999999999999966 9999999999999999983

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.73  E-value=3.1e-09  Score=72.05  Aligned_cols=42  Identities=21%  Similarity=0.260  Sum_probs=38.6

Q ss_pred             CcccccccccccccceeeecccC--cCCcCCcccccccccCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~~~~~~~  273 (274)
                      ..+|+||+++|++|+.++.+|.|  .||.+|+..|++.+..||.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~   48 (55)
T 1iym_A            5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPL   48 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSS
T ss_pred             CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcC
Confidence            36899999999999999999955  9999999999999999983

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.47  E-value=5.5e-08  Score=70.29  Aligned_cols=42  Identities=26%  Similarity=0.470  Sum_probs=38.8

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      ..+|+||+++|+.++.++.|||- .||.+||..|++.++.||.
T Consensus        15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~   57 (78)
T 2ect_A           15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPV   57 (78)
T ss_dssp             SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTT
T ss_pred             CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcC
Confidence            36899999999999999999977 9999999999999999984

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.39  E-value=3.8e-08  Score=69.63  Aligned_cols=42  Identities=19%  Similarity=0.249  Sum_probs=38.7

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      ..+|+||+++|+.++.++.+||- .||.+|+..|+..++.||-
T Consensus        14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~   56 (69)
T 2kiz_A           14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPI   56 (69)
T ss_dssp             CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTT
T ss_pred             CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcC
Confidence            36899999999999999999977 9999999999999998983

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.39  E-value=3.7e-08  Score=70.53  Aligned_cols=42  Identities=21%  Similarity=0.384  Sum_probs=38.6

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      ..+|+||+++|+.++.++.|||- .||.+||..|+..++.||.
T Consensus        15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~   57 (74)
T 2ep4_A           15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPL   57 (74)
T ss_dssp             SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTT
T ss_pred             CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCC
Confidence            36899999999999999999966 9999999999999998983

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.37  E-value=2.5e-08  Score=74.13  Aligned_cols=39  Identities=15%  Similarity=0.005  Sum_probs=31.0

Q ss_pred             cccccccccccceeeecccC--cCCcCCcccccccccCCCC
Q 024019          235 CPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       235 CsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~~~~~~~  273 (274)
                      |+||+++|+.+|.++.+|.|  .||.+||+.|++.+..||-
T Consensus        29 C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~   69 (81)
T 2ecl_A           29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPL   69 (81)
T ss_dssp             CTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTT
T ss_pred             CcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCC
Confidence            44444444567889999856  9999999999999999983

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.23  E-value=1.9e-07  Score=70.53  Aligned_cols=40  Identities=20%  Similarity=0.215  Sum_probs=34.5

Q ss_pred             CcccccccccccccceeeecccC------cCCcCCcccccccc--cCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS------IFYSSCSVSDFTYL--RCGI  272 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC------~FH~~CI~~w~~~~--~~~~  272 (274)
                      ..+|+||+++|++++.+ .+||.      .||.+|++.|+...  +.||
T Consensus        15 ~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~Cp   62 (80)
T 2d8s_A           15 QDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCE   62 (80)
T ss_dssp             SCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCS
T ss_pred             CCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCC
Confidence            36899999999999887 59982      89999999999886  4776

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.22  E-value=9.2e-08  Score=73.65  Aligned_cols=40  Identities=20%  Similarity=0.326  Sum_probs=33.5

Q ss_pred             cccccccccccccc---------------eeeecccC-cCCcCCccccc-----ccccCCC
Q 024019          233 SECPICLEEFHVGN---------------EVKISFLS-IFYSSCSVSDF-----TYLRCGI  272 (274)
Q Consensus       233 ~eCsICLedFe~GE---------------evR~LPcC-~FH~~CI~~w~-----~~~~~~~  272 (274)
                      .+|+||+++|++++               .++.+||. .||.+||..|+     .....||
T Consensus        26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP   86 (114)
T 1v87_A           26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP   86 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCT
T ss_pred             CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCC
Confidence            58999999998765               45578877 99999999999     5677887

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.15  E-value=4e-07  Score=72.08  Aligned_cols=56  Identities=14%  Similarity=0.111  Sum_probs=40.8

Q ss_pred             HhcCCceeeecC--------CCCCccccccccccccc---------------ceeeecccC-cCCcCCcccccccccCCC
Q 024019          217 IQELPKFRLKAV--------PTDCSECPICLEEFHVG---------------NEVKISFLS-IFYSSCSVSDFTYLRCGI  272 (274)
Q Consensus       217 IqaLP~~~~t~~--------~~d~~eCsICLedFe~G---------------EevR~LPcC-~FH~~CI~~w~~~~~~~~  272 (274)
                      .++.|++++++-        ..+...|+||+++|++.               ..++.+||. .||..||++|+..+..||
T Consensus        14 ~~~~~r~~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP   93 (106)
T 3dpl_R           14 GAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP   93 (106)
T ss_dssp             ---CCSEEEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCS
T ss_pred             ccccCceeEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCc
Confidence            355666666532        12336899999999865               136778866 999999999999999998

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.11  E-value=5.3e-07  Score=60.77  Aligned_cols=42  Identities=21%  Similarity=0.310  Sum_probs=35.6

Q ss_pred             Cccccccccccccc-ceeeecccC-cCCcCCcccccccccCCCC
Q 024019          232 CSECPICLEEFHVG-NEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~G-EevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      ..+|+||+++|.++ +.++.+||- .||.+|+..|+.....||.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~   48 (55)
T 2ecm_A            5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPL   48 (55)
T ss_dssp             CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTT
T ss_pred             CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCC
Confidence            36899999999765 457788866 9999999999999888884

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.09  E-value=1.1e-07  Score=77.13  Aligned_cols=41  Identities=15%  Similarity=0.260  Sum_probs=0.4

Q ss_pred             Ccccccccccccc-------------cceeee--cccC-cCCcCCcccccccccCCC
Q 024019          232 CSECPICLEEFHV-------------GNEVKI--SFLS-IFYSSCSVSDFTYLRCGI  272 (274)
Q Consensus       232 ~~eCsICLedFe~-------------GEevR~--LPcC-~FH~~CI~~w~~~~~~~~  272 (274)
                      +..|+||+++|++             ||+...  +||. .||..||++|+..+..||
T Consensus        48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP  104 (117)
T 4a0k_B           48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP  104 (117)
T ss_dssp             C--------------------------------------------------------
T ss_pred             CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCC
Confidence            3689999999986             333333  4655 999999999999999998

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=97.92  E-value=1e-06  Score=62.07  Aligned_cols=42  Identities=19%  Similarity=0.447  Sum_probs=36.3

Q ss_pred             Ccccccccccccc----cceeeecccC-cCCcCCcccccccccCCCC
Q 024019          232 CSECPICLEEFHV----GNEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~----GEevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      ..+|+||+++|.+    ++.+..+||- .||.+|+..|++....||.
T Consensus        10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~   56 (71)
T 3ng2_A           10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT   56 (71)
T ss_dssp             CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTT
T ss_pred             CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCC
Confidence            4789999999986    4667888877 9999999999999888884

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.90  E-value=1.2e-06  Score=61.03  Aligned_cols=42  Identities=17%  Similarity=0.359  Sum_probs=36.0

Q ss_pred             Cccccccccccccc----ceeeecccC-cCCcCCcccccccccCCCC
Q 024019          232 CSECPICLEEFHVG----NEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~G----EevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      ..+|+||+++|++.    +.+..+||- .||.+||..|++.++.||.
T Consensus        15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~   61 (69)
T 2ea6_A           15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT   61 (69)
T ss_dssp             CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTT
T ss_pred             CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCC
Confidence            46899999999874    555788877 9999999999999988984

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=97.80  E-value=1.4e-06  Score=59.85  Aligned_cols=42  Identities=17%  Similarity=0.356  Sum_probs=35.9

Q ss_pred             Cccccccccccccc----ceeeecccC-cCCcCCcccccccccCCCC
Q 024019          232 CSECPICLEEFHVG----NEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~G----EevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      ..+|+||+++|++.    +.+..+||- .||.+|+..|++.+..||.
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~   49 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT   49 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTT
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCC
Confidence            36899999999864    556788877 9999999999999988884

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=97.77  E-value=5.7e-06  Score=58.00  Aligned_cols=39  Identities=21%  Similarity=0.158  Sum_probs=34.0

Q ss_pred             cccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      .+|+||++++++  .++.+||- .||.+|+..|++.+..||.
T Consensus         6 ~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~   45 (68)
T 1chc_A            6 ERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPL   45 (68)
T ss_dssp             CCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTT
T ss_pred             CCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcC
Confidence            689999999874  45789977 9999999999999999984

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.73  E-value=5.4e-06  Score=58.58  Aligned_cols=37  Identities=22%  Similarity=0.152  Sum_probs=33.1

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCcccccccccCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGI  272 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~  272 (274)
                      ..+|+||++.+.+    ..+||- .||.+|+..|+...+.||
T Consensus        15 ~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP   52 (70)
T 2ecn_A           15 EEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCP   52 (70)
T ss_dssp             CCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCH
T ss_pred             CCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCC
Confidence            3689999999987    678977 999999999999888887

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.59  E-value=9.5e-06  Score=59.04  Aligned_cols=42  Identities=21%  Similarity=0.278  Sum_probs=36.0

Q ss_pred             Ccccccccccccccce-eeecccC-cCCcCCcccccccc---cCCCC
Q 024019          232 CSECPICLEEFHVGNE-VKISFLS-IFYSSCSVSDFTYL---RCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEe-vR~LPcC-~FH~~CI~~w~~~~---~~~~~  273 (274)
                      ..+|+||++.|.+++. .+.+||- .||.+|+..|+...   ..||.
T Consensus        15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~   61 (88)
T 2ct2_A           15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPF   61 (88)
T ss_dssp             CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTT
T ss_pred             CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCC
Confidence            4789999999999886 7888966 99999999999875   67773

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=97.53  E-value=9.2e-06  Score=62.47  Aligned_cols=42  Identities=19%  Similarity=0.447  Sum_probs=36.5

Q ss_pred             Ccccccccccccc----cceeeecccC-cCCcCCcccccccccCCCC
Q 024019          232 CSECPICLEEFHV----GNEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~----GEevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      ..+|+||+++|++    |+.+..+||- .||.+||..|++..+.||.
T Consensus         7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~   53 (133)
T 4ap4_A            7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT   53 (133)
T ss_dssp             SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTT
T ss_pred             CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCC
Confidence            4789999999986    4667888877 9999999999999999984

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.48  E-value=3.5e-05  Score=52.10  Aligned_cols=39  Identities=18%  Similarity=0.146  Sum_probs=31.7

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCcccc---cccccCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSD---FTYLRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w---~~~~~~~~~  273 (274)
                      ..+|+||++.+++.   ..+||- .||.+||..|   ++.++.||.
T Consensus        15 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~   57 (58)
T 2ecj_A           15 EASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPV   57 (58)
T ss_dssp             CCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSC
T ss_pred             CCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCC
Confidence            36899999999874   458866 9999999999   455677874

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.45  E-value=2.4e-05  Score=55.82  Aligned_cols=39  Identities=18%  Similarity=0.158  Sum_probs=33.3

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      ..+|+||++.+++   ...+||- .||.+||..|+..+..||.
T Consensus        15 ~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~   54 (71)
T 2d8t_A           15 VPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCAL   54 (71)
T ss_dssp             CCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSS
T ss_pred             CCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcC
Confidence            3689999999976   3567966 9999999999999988884

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=97.33  E-value=1.9e-05  Score=60.67  Aligned_cols=42  Identities=17%  Similarity=0.359  Sum_probs=35.3

Q ss_pred             Cccccccccccccc----ceeeecccC-cCCcCCcccccccccCCCC
Q 024019          232 CSECPICLEEFHVG----NEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~G----EevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      ..+|+||+++|++.    +....+||- .||.+||++|++....||.
T Consensus        72 ~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~  118 (133)
T 4ap4_A           72 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT  118 (133)
T ss_dssp             SCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTT
T ss_pred             CCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCC
Confidence            37899999999874    444677766 9999999999999999983

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.28  E-value=6e-05  Score=52.24  Aligned_cols=39  Identities=18%  Similarity=0.079  Sum_probs=32.0

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCcccccc---cccCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFT---YLRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~---~~~~~~~  273 (274)
                      ..+|+||++.|++   ...+||- .||.+||..|++   ..+.||.
T Consensus        20 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~   62 (63)
T 2ysj_A           20 EVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPL   62 (63)
T ss_dssp             CCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSC
T ss_pred             CCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcC
Confidence            4789999999985   4457866 999999999998   4567874

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.19  E-value=5.3e-05  Score=54.10  Aligned_cols=40  Identities=25%  Similarity=0.324  Sum_probs=32.8

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      ..+|+||++.|++  .+...||- .||.+||..|+...+.||.
T Consensus        15 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~   55 (72)
T 2djb_A           15 YILCSICKGYLID--ATTITECLHTFCKSCIVRHFYYSNRCPK   55 (72)
T ss_dssp             GGSCTTTSSCCSS--CEECSSSCCEECHHHHHHHHHHCSSCTT
T ss_pred             CCCCCCCChHHHC--cCEECCCCCHHHHHHHHHHHHcCCcCCC
Confidence            3689999999986  34334766 9999999999998888884

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=97.17  E-value=9.3e-05  Score=53.35  Aligned_cols=39  Identities=10%  Similarity=0.099  Sum_probs=31.9

Q ss_pred             CcccccccccccccceeeecccC--cCCcCCcccccccc--cCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTYL--RCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~~--~~~~~  273 (274)
                      ..+|+||++.|++   -..+|+|  .||.+||..|+...  +.||.
T Consensus        15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~   57 (74)
T 2yur_A           15 ELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPT   57 (74)
T ss_dssp             GGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSS
T ss_pred             CCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCC
Confidence            3789999999986   3459955  99999999999876  57874

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.06  E-value=0.00013  Score=55.00  Aligned_cols=37  Identities=16%  Similarity=0.204  Sum_probs=32.3

Q ss_pred             cccccccccccccceeeecccC--cCCcCCcccccccc--cCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTYL--RCGI  272 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~~--~~~~  272 (274)
                      .+|+||.+.+..|+...   .|  .||..||..||...  +.||
T Consensus        16 ~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP   56 (74)
T 2ct0_A           16 KICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCP   56 (74)
T ss_dssp             CBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCT
T ss_pred             CcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCC
Confidence            68999999999987554   45  99999999999877  7888

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=97.01  E-value=0.00021  Score=51.04  Aligned_cols=39  Identities=18%  Similarity=0.148  Sum_probs=32.1

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCccccccc-------ccCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTY-------LRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~-------~~~~~~  273 (274)
                      ..+|+||++.|.+   ...+||- .||.+|+..|+..       ...||.
T Consensus        12 ~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~   58 (79)
T 2egp_A           12 EVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPV   58 (79)
T ss_dssp             CCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSS
T ss_pred             CCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCC
Confidence            4789999999976   3458966 9999999999987       567774

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=96.98  E-value=0.00012  Score=52.52  Aligned_cols=37  Identities=30%  Similarity=0.316  Sum_probs=29.6

Q ss_pred             cccccccccccccceeeecccC------cCCcCCccccccc--ccCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS------IFYSSCSVSDFTY--LRCGI  272 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC------~FH~~CI~~w~~~--~~~~~  272 (274)
                      ..|.||+++  .++++ .+||.      .||.+|+..|+..  ++.||
T Consensus         7 ~~CrIC~~~--~~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~   51 (60)
T 1vyx_A            7 PVCWICNEE--LGNER-FRACGCTGELENVHRSCLSTWLTISRNTACQ   51 (60)
T ss_dssp             CEETTTTEE--CSCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCT
T ss_pred             CEeEEeecC--CCCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccC
Confidence            689999997  45554 69963      7999999999975  66676

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.98  E-value=0.00011  Score=53.34  Aligned_cols=39  Identities=21%  Similarity=0.320  Sum_probs=32.9

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      ..+|+||++.|.+   ...+||- .||.+||..|++....||.
T Consensus        15 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~   54 (81)
T 2csy_A           15 PFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYI   54 (81)
T ss_dssp             CSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSS
T ss_pred             CCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCC
Confidence            3689999999966   3358866 9999999999998888884

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.97  E-value=0.00018  Score=50.71  Aligned_cols=39  Identities=18%  Similarity=0.079  Sum_probs=31.3

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCcccccc---cccCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFT---YLRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~---~~~~~~~  273 (274)
                      ..+|+||++.|++   ...+||- .||.+|+..|++   ..+.||.
T Consensus        20 ~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~   62 (73)
T 2ysl_A           20 EVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPL   62 (73)
T ss_dssp             CCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSS
T ss_pred             CCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCC
Confidence            4789999999985   4456866 999999999997   4557773

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=96.92  E-value=0.00013  Score=58.47  Aligned_cols=38  Identities=21%  Similarity=0.094  Sum_probs=33.5

Q ss_pred             cccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      .+|+||++.|.+   ...+||. .||.+||..|+.....||.
T Consensus        54 ~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~   92 (138)
T 4ayc_A           54 LQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPI   92 (138)
T ss_dssp             SBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTT
T ss_pred             CCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCC
Confidence            579999999976   4578977 9999999999999999984

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.89  E-value=0.00024  Score=49.70  Aligned_cols=39  Identities=13%  Similarity=0.094  Sum_probs=31.3

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCccccc-ccccCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDF-TYLRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~-~~~~~~~~  273 (274)
                      ..+|+||++.+++.-   .+||- .||.+|+..|+ ..+..||.
T Consensus        15 ~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~   55 (66)
T 2ecy_A           15 KYKCEKCHLVLCSPK---QTECGHRFCESCMAALLSSSSPKCTA   55 (66)
T ss_dssp             CEECTTTCCEESSCC---CCSSSCCCCHHHHHHHHTTSSCCCTT
T ss_pred             CCCCCCCChHhcCee---ECCCCCHHHHHHHHHHHHhCcCCCCC
Confidence            478999999997643   37866 99999999999 45667874

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.85  E-value=0.00035  Score=49.88  Aligned_cols=39  Identities=21%  Similarity=0.252  Sum_probs=32.2

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCccccccc------ccCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTY------LRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~------~~~~~~  273 (274)
                      ..+|+||++.|++   ...+||- .||.+|+..|+..      ...||.
T Consensus        19 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~   64 (85)
T 2ecv_A           19 EVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPV   64 (85)
T ss_dssp             CCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTT
T ss_pred             CCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCC
Confidence            4789999999975   4567866 9999999999987      677774

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=96.75  E-value=0.00023  Score=53.56  Aligned_cols=39  Identities=26%  Similarity=0.403  Sum_probs=32.4

Q ss_pred             cccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      .+|+||++.|.+  .+..+||. .||.+|+..|+.....||.
T Consensus        23 ~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~   62 (99)
T 2y43_A           23 LRCGICFEYFNI--AMIIPQCSHNYCSLCIRKFLSYKTQCPT   62 (99)
T ss_dssp             TBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHTTCCBCTT
T ss_pred             CCcccCChhhCC--cCEECCCCCHhhHHHHHHHHHCCCCCCC
Confidence            689999999986  33334766 9999999999999888984

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=96.75  E-value=0.00022  Score=54.01  Aligned_cols=38  Identities=26%  Similarity=0.353  Sum_probs=30.9

Q ss_pred             cccccccccccccceeeecccC-cCCcCCccccccccc---CCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLR---CGIE  273 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~---~~~~  273 (274)
                      .+|+||++.|++.   ..+||- .||.+|+..|+....   .||.
T Consensus        22 ~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~   63 (112)
T 1jm7_A           22 LECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPL   63 (112)
T ss_dssp             TSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTT
T ss_pred             CCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcC
Confidence            5899999999753   347866 999999999998754   7774

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.72  E-value=0.00035  Score=49.92  Aligned_cols=39  Identities=21%  Similarity=0.292  Sum_probs=32.1

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCccccccc------ccCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTY------LRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~------~~~~~~  273 (274)
                      ..+|+||++.|.+.   ..+||- .||.+|+..|++.      ...||.
T Consensus        19 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~   64 (85)
T 2ecw_A           19 EVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPV   64 (85)
T ss_dssp             TTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTT
T ss_pred             CCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCC
Confidence            36899999999764   368966 9999999999988      667774

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=96.66  E-value=0.00029  Score=53.86  Aligned_cols=40  Identities=18%  Similarity=0.140  Sum_probs=33.6

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      ..+|+||++.|.+  .+..+||- .||..||..|+.....||.
T Consensus        15 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~   55 (108)
T 2ckl_A           15 HLMCVLCGGYFID--ATTIIECLHSFCKTCIVRYLETSKYCPI   55 (108)
T ss_dssp             GTBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHTSCSBCTT
T ss_pred             cCCCccCChHHhC--cCEeCCCCChhhHHHHHHHHHhCCcCcC
Confidence            3789999999975  45545866 9999999999999999984

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=96.54  E-value=0.00029  Score=53.72  Aligned_cols=39  Identities=21%  Similarity=0.174  Sum_probs=32.6

Q ss_pred             cccccccccccccceeeecccC-cCCcCCcccccccc-cCCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYL-RCGIE  273 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~-~~~~~  273 (274)
                      .+|+||++.|.+  .+..+||- .||.+||..|+... +.||.
T Consensus        23 ~~C~IC~~~~~~--p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~   63 (100)
T 3lrq_A           23 FRCFICMEKLRD--ARLCPHCSKLCCFSCIRRWLTEQRAQCPH   63 (100)
T ss_dssp             TBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHHHTCSBCTT
T ss_pred             CCCccCCccccC--ccccCCCCChhhHHHHHHHHHHCcCCCCC
Confidence            689999999974  44448866 99999999999988 68884

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=96.50  E-value=0.00036  Score=57.03  Aligned_cols=39  Identities=18%  Similarity=0.350  Sum_probs=32.6

Q ss_pred             cccccccccccccceeeecccC-cCCcCCccccccc-ccCCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTY-LRCGIE  273 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~-~~~~~~  273 (274)
                      ..|+||++.|.+  .+..+||- .||.+||..|+.. ...||.
T Consensus        55 ~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~   95 (165)
T 2ckl_B           55 LMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPT   95 (165)
T ss_dssp             HBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTT
T ss_pred             CCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCC
Confidence            589999999986  55556866 9999999999987 777884

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=96.32  E-value=0.0011  Score=63.66  Aligned_cols=50  Identities=20%  Similarity=0.224  Sum_probs=34.4

Q ss_pred             cCCceeeec------CCCCCcccccccccccccceeee----cccC--cCCcCCcccccccc
Q 024019          219 ELPKFRLKA------VPTDCSECPICLEEFHVGNEVKI----SFLS--IFYSSCSVSDFTYL  268 (274)
Q Consensus       219 aLP~~~~t~------~~~d~~eCsICLedFe~GEevR~----LPcC--~FH~~CI~~w~~~~  268 (274)
                      ++|...-++      +..+..+|+||++.+.+++++-.    .|.|  .||..|+..||.-.
T Consensus       289 ~fP~p~~~~~~~~~e~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~  350 (381)
T 3k1l_B          289 YFPMPDWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTL  350 (381)
T ss_dssp             SCCCCCGGGCCSCTTCCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHH
T ss_pred             ccCCCcccccccccccccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhC
Confidence            456655443      22244799999999998554432    2345  99999999999643

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=96.13  E-value=0.0011  Score=47.42  Aligned_cols=39  Identities=18%  Similarity=0.110  Sum_probs=32.0

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCccccccc-ccCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTY-LRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~-~~~~~~  273 (274)
                      ...|+||++.|++-   ..+||- .|+.+||..|+.. .+.||.
T Consensus         8 ~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~   48 (78)
T 1t1h_A            8 YFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPK   48 (78)
T ss_dssp             SSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTT
T ss_pred             cCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCC
Confidence            37899999999763   346866 9999999999987 777874

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=96.08  E-value=0.00087  Score=49.43  Aligned_cols=39  Identities=10%  Similarity=0.099  Sum_probs=31.3

Q ss_pred             CcccccccccccccceeeecccC--cCCcCCcccccccc--cCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTYL--RCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~~--~~~~~  273 (274)
                      ...|+||++.|.+   -..+|+|  .|+.+||..|+...  ..||.
T Consensus        13 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~   55 (92)
T 3ztg_A           13 ELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPT   55 (92)
T ss_dssp             TTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTT
T ss_pred             CCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcC
Confidence            4789999999985   3478956  99999999999654  47774

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=95.99  E-value=0.0015  Score=50.21  Aligned_cols=38  Identities=18%  Similarity=0.228  Sum_probs=31.7

Q ss_pred             cccccccccccccceeeecccC-cCCcCCccccccc-ccCCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTY-LRCGIE  273 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~-~~~~~~  273 (274)
                      .+|+||++.|.+   -..+||. .||..|+..|+.. ...||.
T Consensus        16 ~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~   55 (115)
T 3l11_A           16 CQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPF   55 (115)
T ss_dssp             HBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTT
T ss_pred             CCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCC
Confidence            689999999975   4567977 9999999999977 667874

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=95.94  E-value=0.0011  Score=46.16  Aligned_cols=42  Identities=17%  Similarity=0.201  Sum_probs=31.0

Q ss_pred             Ccccccccc-ccccccee-eecccC-cCCcCCcccccccc-cCCCC
Q 024019          232 CSECPICLE-EFHVGNEV-KISFLS-IFYSSCSVSDFTYL-RCGIE  273 (274)
Q Consensus       232 ~~eCsICLe-dFe~GEev-R~LPcC-~FH~~CI~~w~~~~-~~~~~  273 (274)
                      ..+|+||++ .|...... ..+||- .||.+|+..|+..+ ..||.
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~   48 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPE   48 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTT
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCC
Confidence            368999999 77765443 346866 99999999997543 45773

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=95.92  E-value=0.0057  Score=42.02  Aligned_cols=36  Identities=17%  Similarity=0.130  Sum_probs=28.7

Q ss_pred             CCcccccccccccccceeeecccC-cCCcCCcccccccccCCC
Q 024019          231 DCSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGI  272 (274)
Q Consensus       231 d~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~  272 (274)
                      +..+|+||++.|.+   -+.|||- .|+..|+..|   ...||
T Consensus         5 ~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~---~~~CP   41 (56)
T 1bor_A            5 QFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCP   41 (56)
T ss_dssp             CCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCS
T ss_pred             cCCCceEeCCccCC---eEEcCCCCcccHHHHccC---CCCCC
Confidence            34789999999985   4789966 9999999883   45565

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=95.50  E-value=0.0015  Score=50.83  Aligned_cols=39  Identities=21%  Similarity=0.300  Sum_probs=31.8

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCccccccccc-CCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLR-CGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~-~~~~  273 (274)
                      ..+|+||++.+.+.   ..+||- .|+.+||..|+.... .||.
T Consensus        18 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~   58 (118)
T 3hct_A           18 KYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPV   58 (118)
T ss_dssp             GGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTT
T ss_pred             CCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCC
Confidence            47899999999864   457866 999999999998765 7773

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=95.39  E-value=0.002  Score=50.28  Aligned_cols=38  Identities=13%  Similarity=0.126  Sum_probs=30.7

Q ss_pred             cccccccccccccceeeecccC-cCCcCCccccccc-ccCCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTY-LRCGIE  273 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~-~~~~~~  273 (274)
                      ..|+||++.|.+   -..+||- .||.+||..|+.. .+.||.
T Consensus        53 ~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~   92 (124)
T 3fl2_A           53 FQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPA   92 (124)
T ss_dssp             TBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTT
T ss_pred             CCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCC
Confidence            689999999985   3457866 9999999999974 447874

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=95.15  E-value=0.012  Score=45.69  Aligned_cols=36  Identities=17%  Similarity=0.144  Sum_probs=29.5

Q ss_pred             cccccccccccccceeeec-ccC-cCCcCCcccccccccCCCC
Q 024019          233 SECPICLEEFHVGNEVKIS-FLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~L-PcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      ..|+||++.|.+   -..+ ||- .|+..||..|++  ..||.
T Consensus        23 ~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--~~CP~   60 (117)
T 1jm7_B           23 LRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--TGCPV   60 (117)
T ss_dssp             TSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--TBCSS
T ss_pred             CCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc--CCCcC
Confidence            689999999975   3456 766 999999999998  66774

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=94.97  E-value=0.0027  Score=48.84  Aligned_cols=38  Identities=13%  Similarity=0.157  Sum_probs=31.5

Q ss_pred             cccccccccccccceeeecccC-cCCcCCccccccc-ccCCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTY-LRCGIE  273 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~-~~~~~~  273 (274)
                      ..|+||++.+.+  . ..+||- .||.+||..|++. .+.||.
T Consensus        24 ~~C~IC~~~~~~--p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~   63 (116)
T 1rmd_A           24 ISCQICEHILAD--P-VETSCKHLFCRICILRCLKVMGSYCPS   63 (116)
T ss_dssp             TBCTTTCSBCSS--E-EECTTSCEEEHHHHHHHHHHTCSBCTT
T ss_pred             CCCCCCCcHhcC--c-EEcCCCCcccHHHHHHHHhHCcCcCCC
Confidence            689999999975  2 347866 9999999999987 778874

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=94.97  E-value=0.0048  Score=59.05  Aligned_cols=38  Identities=26%  Similarity=0.190  Sum_probs=32.8

Q ss_pred             cccccccccccccceeeecccC-cCCcCCcccccc-cccCCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFT-YLRCGIE  273 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~-~~~~~~~  273 (274)
                      .+|+||++.+++   ...+||- .||.+|+..|+. ..+.||.
T Consensus       333 ~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~  372 (389)
T 2y1n_A          333 QLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPF  372 (389)
T ss_dssp             SBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTT
T ss_pred             CCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCC
Confidence            589999999865   6778977 999999999998 6888884

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=94.61  E-value=0.0042  Score=51.00  Aligned_cols=38  Identities=13%  Similarity=0.026  Sum_probs=31.1

Q ss_pred             cccccccccccccceeeecccC-cCCcCCccccccccc-CCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLR-CGIE  273 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~-~~~~  273 (274)
                      ..|+||++.|.+-   ..+||- .|+..||..|+.... .||.
T Consensus        79 ~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~  118 (150)
T 1z6u_A           79 FMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPA  118 (150)
T ss_dssp             TBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTT
T ss_pred             CEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCC
Confidence            6899999999763   348977 999999999998754 6874

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=93.37  E-value=0.022  Score=42.30  Aligned_cols=42  Identities=17%  Similarity=0.242  Sum_probs=29.8

Q ss_pred             CCcccccccccccccceeeecc--cC-cCCcCCccccc-ccccCCCC
Q 024019          231 DCSECPICLEEFHVGNEVKISF--LS-IFYSSCSVSDF-TYLRCGIE  273 (274)
Q Consensus       231 d~~eCsICLedFe~GEevR~LP--cC-~FH~~CI~~w~-~~~~~~~~  273 (274)
                      +..+|+||++.+...| .+.+|  |- .|+..|+.... +.+..||.
T Consensus        10 ~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~   55 (78)
T 1e4u_A           10 DPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPA   55 (78)
T ss_dssp             CCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTT
T ss_pred             cCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCC
Confidence            3478999999886544 45666  44 99999998765 33556764

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=93.14  E-value=0.0064  Score=49.53  Aligned_cols=39  Identities=13%  Similarity=0.037  Sum_probs=31.1

Q ss_pred             CCcccccccccccccceeeecccC-cCCcCCccccccccc-CCC
Q 024019          231 DCSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLR-CGI  272 (274)
Q Consensus       231 d~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~-~~~  272 (274)
                      +..+|+||++.+++-   .++||- .|+..||..|+.... .||
T Consensus        30 ~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP   70 (141)
T 3knv_A           30 AKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCA   70 (141)
T ss_dssp             GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECH
T ss_pred             cCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCC
Confidence            347999999999874   347866 999999999997553 665

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=92.91  E-value=0.018  Score=43.03  Aligned_cols=35  Identities=29%  Similarity=0.524  Sum_probs=29.5

Q ss_pred             cccccccccccccceeeecccC-cCCcCCccccccc
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTY  267 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~  267 (274)
                      .+|+||+++|...+.++..||- .|..+|+...++.
T Consensus         6 ~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~   41 (94)
T 1wim_A            6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVEL   41 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHH
T ss_pred             cCCcccCcccccccceEcCCCCCcccHHHHHHHHHH
Confidence            6899999999988877767866 9999999887763

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=90.12  E-value=0.041  Score=44.90  Aligned_cols=40  Identities=20%  Similarity=0.297  Sum_probs=31.4

Q ss_pred             CCcccccccccccccceeeecccC-cCCcCCccccccccc-CCCC
Q 024019          231 DCSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLR-CGIE  273 (274)
Q Consensus       231 d~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~-~~~~  273 (274)
                      +...|+||++.|.+-   ..+||- .|..+|+..|+.... .||.
T Consensus        17 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~   58 (170)
T 3hcs_A           17 SKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPV   58 (170)
T ss_dssp             GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTT
T ss_pred             CCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCC
Confidence            347999999999863   347866 999999999997643 6763

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=89.80  E-value=0.089  Score=37.86  Aligned_cols=33  Identities=12%  Similarity=0.229  Sum_probs=27.0

Q ss_pred             cccccccccccccceeeecccC-c-CCcCCcccccccccCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-I-FYSSCSVSDFTYLRCGI  272 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~-FH~~CI~~w~~~~~~~~  272 (274)
                      .+|+||++.+.+   ...+||- . |..+|+..|    +.||
T Consensus        25 ~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP   59 (74)
T 4ic3_A           25 KLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCP   59 (74)
T ss_dssp             TBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCT
T ss_pred             CCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCC
Confidence            589999998875   5578977 6 999999988    5666

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=89.09  E-value=0.17  Score=42.90  Aligned_cols=39  Identities=8%  Similarity=-0.084  Sum_probs=31.0

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCccccccccc-CCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLR-CGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~-~~~~  273 (274)
                      ...|+||++-|++  .| .+||- .|-.+||..|+..+. .||.
T Consensus       208 ~~~c~i~~~~~~d--Pv-~~~~gh~f~~~~i~~~~~~~~~~cP~  248 (281)
T 2c2l_A          208 YLCGKISFELMRE--PC-ITPSGITYDRKDIEEHLQRVGHFNPV  248 (281)
T ss_dssp             TTBCTTTCSBCSS--EE-ECSSCCEEETTHHHHHHHHTCSSCTT
T ss_pred             ccCCcCcCCHhcC--Ce-ECCCCCEECHHHHHHHHHHCCCCCcC
Confidence            4789999999986  33 57855 999999999998643 4885

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.98  E-value=0.072  Score=40.12  Aligned_cols=39  Identities=18%  Similarity=0.129  Sum_probs=30.7

Q ss_pred             Ccccccccccccccceeeecc-cC-cCCcCCcccccccc------cCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISF-LS-IFYSSCSVSDFTYL------RCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LP-cC-~FH~~CI~~w~~~~------~~~~~  273 (274)
                      ...|+||++-|++  -| .+| |- .|-.+||..|+..+      ..||.
T Consensus         7 ~~~CPI~~~~~~d--PV-~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~   53 (94)
T 2yu4_A            7 GFTCPITKEEMKK--PV-KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQ   53 (94)
T ss_dssp             CCBCTTTCSBCSS--EE-EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCS
T ss_pred             EeECcCcCchhcC--CE-EcCCCCCeecHHHHHHHHHHccCcCCCCCCCc
Confidence            3689999999985  44 466 44 99999999999875      37774

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=84.09  E-value=0.23  Score=38.20  Aligned_cols=38  Identities=8%  Similarity=-0.214  Sum_probs=32.0

Q ss_pred             cccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      ..|+||++-|++   =-.+||- .|-.+||..|+..+..||.
T Consensus        30 ~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~   68 (100)
T 2kre_A           30 FRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPF   68 (100)
T ss_dssp             TBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSS
T ss_pred             hCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCC
Confidence            689999999986   2357855 9999999999998888884

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=83.95  E-value=0.24  Score=37.94  Aligned_cols=38  Identities=13%  Similarity=-0.167  Sum_probs=32.3

Q ss_pred             cccccccccccccceeeecccC--cCCcCCcccccccccCCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~~~~~~~  273 (274)
                      ..|+||++-|++  -| .+||.  .|-..||..|+..+..||.
T Consensus        23 ~~CpI~~~~m~d--PV-~~~cG~htf~r~cI~~~l~~~~~cP~   62 (98)
T 1wgm_A           23 FLDPIMSTLMCD--PV-VLPSSRVTVDRSTIARHLLSDQTDPF   62 (98)
T ss_dssp             TBCTTTCSBCSS--EE-ECTTTCCEEEHHHHHHHTTTSCBCTT
T ss_pred             cCCcCccccccC--Ce-ECCCCCeEECHHHHHHHHHhCCCCCC
Confidence            689999999986  33 47877  8999999999998888885

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=83.07  E-value=0.2  Score=37.17  Aligned_cols=38  Identities=5%  Similarity=-0.222  Sum_probs=32.0

Q ss_pred             cccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      ..|+||++-|++   =-.+||- .|-.+||..|+..+..||.
T Consensus        15 ~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~   53 (85)
T 2kr4_A           15 FRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPF   53 (85)
T ss_dssp             TBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTT
T ss_pred             eECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCC
Confidence            689999999986   2357855 9999999999998888884

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=82.55  E-value=0.19  Score=35.43  Aligned_cols=39  Identities=13%  Similarity=0.091  Sum_probs=29.6

Q ss_pred             cccccccccccccceeeecccC-c-CCcCCcccccccccCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-I-FYSSCSVSDFTYLRCGI  272 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~-FH~~CI~~w~~~~~~~~  272 (274)
                      .+|+||++++.+.- +..+||- . |=.+|+..|.+.+..||
T Consensus         9 ~~C~IC~~~~~~~~-~~~~pCgH~~~C~~C~~~~~~~~~~CP   49 (64)
T 2vje_A            9 EPCVICQGRPKNGC-IVHGKTGHLMACFTCAKKLKKRNKPCP   49 (64)
T ss_dssp             SCCTTTSSSCSCEE-EEETTEEEEEECHHHHHHHHHTTCCCT
T ss_pred             CCCCcCCCCCCCEE-EECCCCCChhhHHHHHHHHHHcCCcCC
Confidence            68999999887641 1234966 5 66899999998888887

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=82.49  E-value=0.63  Score=43.36  Aligned_cols=35  Identities=17%  Similarity=0.234  Sum_probs=28.5

Q ss_pred             CcccccccccccccceeeecccC-c-CCcCCcccccccccCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-I-FYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~-FH~~CI~~w~~~~~~~~~  273 (274)
                      ...|+||++.+.+   ...+||- . |...|+..|    +.||-
T Consensus       295 ~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~  331 (345)
T 3t6p_A          295 ERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPI  331 (345)
T ss_dssp             TCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTT
T ss_pred             CCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCC
Confidence            3689999999875   5677977 6 999999988    67773

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.36  E-value=0.28  Score=35.11  Aligned_cols=33  Identities=12%  Similarity=0.276  Sum_probs=25.5

Q ss_pred             cccccccccccccceeeecccC-c-CCcCCcccccccccCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-I-FYSSCSVSDFTYLRCGI  272 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~-FH~~CI~~w~~~~~~~~  272 (274)
                      .+|+||++.+.+   ...+||- . |..+|+..    .+.||
T Consensus        26 ~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~~CP   60 (75)
T 2ecg_A           26 KLCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VDKCP   60 (75)
T ss_dssp             HSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CSBCT
T ss_pred             CCCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CCCCc
Confidence            589999998865   5678977 6 99999953    35666

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.12  E-value=1  Score=32.22  Aligned_cols=35  Identities=9%  Similarity=0.170  Sum_probs=26.8

Q ss_pred             CCcccccccccccccceeeecccC-c-CCcCCcccccccccCCC
Q 024019          231 DCSECPICLEEFHVGNEVKISFLS-I-FYSSCSVSDFTYLRCGI  272 (274)
Q Consensus       231 d~~eCsICLedFe~GEevR~LPcC-~-FH~~CI~~w~~~~~~~~  272 (274)
                      +..+|+||++...+   +..|||- . |-.+|+..    .+.||
T Consensus        14 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP   50 (68)
T 2ea5_A           14 NSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCP   50 (68)
T ss_dssp             CSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCT
T ss_pred             CCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCC
Confidence            34789999998765   7789976 5 99999872    46666

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	274
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.1
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.2
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.12
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.01
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	97.72
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	97.6
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	97.18
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	97.07
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	96.79
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	96.68
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	96.62
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	96.44
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	96.11
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	95.2
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	91.81
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	91.77
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	90.36

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.10  E-value=9.7e-12  Score=86.74  Aligned_cols=41  Identities=22%  Similarity=0.289  Sum_probs=39.0

Q ss_pred             CcccccccccccccceeeecccC--cCCcCCcccccccccCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTYLRCGI  272 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~~~~~~  272 (274)
                      ..+|+||+++|++||+++++|+|  .||.+||..|++.+..||
T Consensus         5 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP   47 (55)
T d1iyma_           5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCP   47 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCS
T ss_pred             CCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCC
Confidence            36899999999999999999988  999999999999999998

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=9e-08  Score=65.16  Aligned_cols=40  Identities=18%  Similarity=0.168  Sum_probs=33.2

Q ss_pred             ccccccccccccccee-eecccC-cCCcCCccccccc-ccCCC
Q 024019          233 SECPICLEEFHVGNEV-KISFLS-IFYSSCSVSDFTY-LRCGI  272 (274)
Q Consensus       233 ~eCsICLedFe~GEev-R~LPcC-~FH~~CI~~w~~~-~~~~~  272 (274)
                      .+|+||+++|+.++.+ +.+||- .||.+|+..|++. ++.||
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP   43 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCP   43 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCT
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCC
Confidence            4799999999988775 445755 9999999999984 66687

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.12  E-value=2e-07  Score=66.00  Aligned_cols=39  Identities=21%  Similarity=0.158  Sum_probs=34.3

Q ss_pred             cccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      .+|+||++.|++  .++.+||- .||.+|+..|+..++.||-
T Consensus         6 d~C~IC~~~~~~--~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~   45 (68)
T d1chca_           6 ERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPL   45 (68)
T ss_dssp             CCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTT
T ss_pred             CCCccCCcCccC--CcEEeCCCCcCcHHHHHHHHHhCCcCCC
Confidence            479999999975  46778977 9999999999999999983

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=2.6e-07  Score=68.40  Aligned_cols=40  Identities=15%  Similarity=0.157  Sum_probs=33.8

Q ss_pred             cccccccccccccc---------------eeeecccC-cCCcCCcccccccccCCC
Q 024019          233 SECPICLEEFHVGN---------------EVKISFLS-IFYSSCSVSDFTYLRCGI  272 (274)
Q Consensus       233 ~eCsICLedFe~GE---------------evR~LPcC-~FH~~CI~~w~~~~~~~~  272 (274)
                      .+|+||++++.+..               .+..+||- .||.+||.+|++.+..||
T Consensus        22 d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP   77 (88)
T d3dplr1          22 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP   77 (88)
T ss_dssp             CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCS
T ss_pred             CcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCC
Confidence            47999998887533               36777866 999999999999999999

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=3.2e-06  Score=63.98  Aligned_cols=35  Identities=23%  Similarity=0.432  Sum_probs=28.2

Q ss_pred             cccccccccccc---------------cceeeecccC-cCCcCCccccccc
Q 024019          233 SECPICLEEFHV---------------GNEVKISFLS-IFYSSCSVSDFTY  267 (274)
Q Consensus       233 ~eCsICLedFe~---------------GEevR~LPcC-~FH~~CI~~w~~~  267 (274)
                      .+|+||++++.+               .+.++.+||- .||.+||+.|++.
T Consensus        26 ~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~   76 (114)
T d1v87a_          26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCN   76 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHH
T ss_pred             ccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHh
Confidence            579999999864               3345667766 9999999999974

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=2.8e-06  Score=59.72  Aligned_cols=42  Identities=17%  Similarity=0.165  Sum_probs=31.9

Q ss_pred             Ccccccccccccccce--eeecccC-cCCcCCcccccc-cccCCCC
Q 024019          232 CSECPICLEEFHVGNE--VKISFLS-IFYSSCSVSDFT-YLRCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEe--vR~LPcC-~FH~~CI~~w~~-~~~~~~~  273 (274)
                      +.+|+||++++..++.  +...||- .||.+||..|++ .++.||.
T Consensus         3 d~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~   48 (65)
T d1g25a_           3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPE   48 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTT
T ss_pred             CCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCC
Confidence            3689999999765443  3455755 999999999994 5677883

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=3.7e-05  Score=55.75  Aligned_cols=37  Identities=27%  Similarity=0.230  Sum_probs=31.2

Q ss_pred             cccccccccccccceeeecccC-cCCcCCcccccc-cccCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFT-YLRCGI  272 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~-~~~~~~  272 (274)
                      ..|+||++++++   .+.+||. .||.+||..|++ ..+.||
T Consensus        24 ~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~wl~~~~~~CP   62 (79)
T d1fbva4          24 QLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCP   62 (79)
T ss_dssp             TBCTTTSSSBCC---EECSSSCCEECHHHHHHHHHTTCCSCT
T ss_pred             CCCccCCCcCCC---eEEeCCCCeeeHHHHHHHHHHCcCcCC
Confidence            469999988765   7889977 999999999996 456787

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00016  Score=49.69  Aligned_cols=35  Identities=17%  Similarity=0.125  Sum_probs=28.5

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCcccccccccCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGI  272 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~  272 (274)
                      ..+|+||+++|++   .+.+||. .||.+|+..|   +..||
T Consensus         6 ~l~C~IC~~~~~~---p~~lpCgH~fC~~Ci~~~---~~~CP   41 (56)
T d1bora_           6 FLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCP   41 (56)
T ss_dssp             CSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCS
T ss_pred             CCCCcccCcccCC---CEEecCCCHHhHHHHHcC---CCcCc
Confidence            3699999999976   5689977 9999999876   44566

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=96.79  E-value=0.00012  Score=50.00  Aligned_cols=39  Identities=23%  Similarity=0.223  Sum_probs=28.5

Q ss_pred             CCcccccccccccccceeeeccc----C--cCCcCCccccccc--ccCCC
Q 024019          231 DCSECPICLEEFHVGNEVKISFL----S--IFYSSCSVSDFTY--LRCGI  272 (274)
Q Consensus       231 d~~eCsICLedFe~GEevR~LPc----C--~FH~~CI~~w~~~--~~~~~  272 (274)
                      +...|+||++++...   ...||    |  .||.+|+..|+..  ++.||
T Consensus         5 d~~~C~IC~~~~~~~---~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP   51 (60)
T d1vyxa_           5 DVPVCWICNEELGNE---RFRACGCTGELENVHRSCLSTWLTISRNTACQ   51 (60)
T ss_dssp             SCCEETTTTEECSCC---CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCT
T ss_pred             CCCCCccCCccCCCc---eeEecccCCCCCEEcHHHHHHHHhhCCCCCCc
Confidence            346899999988643   23443    2  8999999999965  44677

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.0012  Score=48.43  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=28.4

Q ss_pred             cccccccccccccceeeecccC-cCCcCCcccccccccCCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~~~~~  273 (274)
                      .+|+||++.|++  .+...||- .||.+||..|+..  .||.
T Consensus        23 l~C~IC~~~~~~--pv~~~~CgH~fC~~Ci~~~~~~--~CP~   60 (97)
T d1jm7b_          23 LRCSRCTNILRE--PVCLGGCEHIFCSNCVSDCIGT--GCPV   60 (97)
T ss_dssp             TSCSSSCSCCSS--CBCCCSSSCCBCTTTGGGGTTT--BCSS
T ss_pred             CCCccCCchhhc--CceeCCCCCchhHHHHHHHHhc--cccc
Confidence            689999999975  34434544 9999999999864  3774

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00015  Score=54.03  Aligned_cols=38  Identities=26%  Similarity=0.351  Sum_probs=31.1

Q ss_pred             cccccccccccccceeeecccC-cCCcCCccccccccc---CCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLR---CGIE  273 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~---~~~~  273 (274)
                      .+|+||++.|++   -..+||- .|+.+||..|+...+   .||.
T Consensus        22 l~CpIC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~   63 (103)
T d1jm7a_          22 LECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPL   63 (103)
T ss_dssp             TSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTT
T ss_pred             cCCCccCchhCC---eEEcCCCCchhhHHHHHHHHHCCCCCcCcC
Confidence            689999999975   3468966 999999999997764   6774

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.44  E-value=0.00011  Score=49.89  Aligned_cols=37  Identities=22%  Similarity=-0.019  Sum_probs=31.3

Q ss_pred             ccccccccccccceeeecccC--cCCcCCcccccccccCCCC
Q 024019          234 ECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       234 eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~~~~~~~  273 (274)
                      -|+||++-+++  -| .+|.|  .|+.+||..|++.+..||.
T Consensus         2 ~C~Ic~~~~~~--Pv-~~~~cGh~fc~~cI~~~l~~~~~CP~   40 (56)
T d2baya1           2 LCAISGKVPRR--PV-LSPKSRTIFEKSLLEQYVKDTGNDPI   40 (56)
T ss_dssp             CCTTTCSCCSS--EE-EETTTTEEEEHHHHHHHHHHHSBCTT
T ss_pred             CCccCCchHHh--cC-ccCCCCCcccHHHHHHHHhhccCCCc
Confidence            59999999975  33 56767  9999999999999999984

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.00038  Score=50.54  Aligned_cols=35  Identities=29%  Similarity=0.525  Sum_probs=30.2

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCcccccc
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFT  266 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~  266 (274)
                      ..+|+||++++...+..+.++|- .|+.+|+..|++
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~   40 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVE   40 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHH
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHH
Confidence            36899999999888887777755 999999999886

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.20  E-value=0.0004  Score=51.56  Aligned_cols=38  Identities=13%  Similarity=0.154  Sum_probs=32.2

Q ss_pred             cccccccccccccceeeecccC-cCCcCCcccccc-cccCCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFT-YLRCGIE  273 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~-~~~~~~~  273 (274)
                      .+|+||++.+++   ...+||- .|...||..|++ .+|.||.
T Consensus        24 l~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~   63 (86)
T d1rmda2          24 ISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPS   63 (86)
T ss_dssp             TBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTT
T ss_pred             cCCccCCcchhc---ceecCCCChhhHHHHHHHHhhCCCcCcc
Confidence            689999999975   5678966 999999999995 6788984

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.81  E-value=0.017  Score=42.82  Aligned_cols=38  Identities=11%  Similarity=-0.223  Sum_probs=33.5

Q ss_pred             cccccccccccccceeeecccC--cCCcCCcccccccccCCCC
Q 024019          233 SECPICLEEFHVGNEVKISFLS--IFYSSCSVSDFTYLRCGIE  273 (274)
Q Consensus       233 ~eCsICLedFe~GEevR~LPcC--~FH~~CI~~w~~~~~~~~~  273 (274)
                      ..|+||++-+++   --.+|+|  .|=.+||..|+..+..||.
T Consensus        23 f~CPI~~~lm~d---PV~~~~~~~ty~r~~I~~~l~~~~~~P~   62 (98)
T d1wgma_          23 FLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPF   62 (98)
T ss_dssp             TBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTT
T ss_pred             hCCcCchhHHHH---HHhcccccchhhHHHHHHHHHhcCCccc
Confidence            789999999987   4488988  6999999999999988884

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.77  E-value=0.016  Score=40.63  Aligned_cols=39  Identities=21%  Similarity=0.141  Sum_probs=32.0

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCcccccccc-cCCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYL-RCGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~-~~~~~  273 (274)
                      ...|+||++-|++  -| .+||. .|..+||..|++.+ +.||.
T Consensus         8 ~l~CpIc~~~m~d--PV-~~~cgh~fc~~ci~~~~~~~~~~cP~   48 (78)
T d1t1ha_           8 YFRCPISLELMKD--PV-IVSTGQTYERSSIQKWLDAGHKTCPK   48 (78)
T ss_dssp             SSSCTTTSCCCSS--EE-EETTTEEEEHHHHHHHHTTTCCBCTT
T ss_pred             cCCCcCcCchhhC--ce-EccCCCcchHHHHHHHHHHCCCCCCc
Confidence            3789999999976  34 67977 99999999999875 55774

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.36  E-value=0.03  Score=39.34  Aligned_cols=39  Identities=8%  Similarity=-0.084  Sum_probs=31.8

Q ss_pred             CcccccccccccccceeeecccC-cCCcCCccccccccc-CCCC
Q 024019          232 CSECPICLEEFHVGNEVKISFLS-IFYSSCSVSDFTYLR-CGIE  273 (274)
Q Consensus       232 ~~eCsICLedFe~GEevR~LPcC-~FH~~CI~~w~~~~~-~~~~  273 (274)
                      ...|+||++-|++  -| .+||. .|-.+||..|+..++ .||.
T Consensus         7 ~l~CpIc~~l~~d--Pv-~~~cGhtfc~~ci~~~l~~~~~~cP~   47 (80)
T d2c2la2           7 YLCGKISFELMRE--PC-ITPSGITYDRKDIEEHLQRVGHFNPV   47 (80)
T ss_dssp             TTBCTTTCSBCSS--EE-ECSSCCEEETTHHHHHHHHTCSSCTT
T ss_pred             cccCcCcCchhhh--hc-ccCCcCeecHHHHHHHHhcCCccCCC
Confidence            3689999999987  44 68977 999999999997654 5774