Citrus Sinensis ID: 024032
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 273 | ||||||
| 224068434 | 381 | predicted protein [Populus trichocarpa] | 0.989 | 0.708 | 0.692 | 1e-106 | |
| 255548537 | 382 | ATP binding protein, putative [Ricinus c | 0.989 | 0.706 | 0.674 | 1e-105 | |
| 224128396 | 381 | predicted protein [Populus trichocarpa] | 0.989 | 0.708 | 0.677 | 1e-103 | |
| 359480106 | 379 | PREDICTED: uncharacterized protein LOC10 | 0.985 | 0.709 | 0.614 | 7e-85 | |
| 297743947 | 287 | unnamed protein product [Vitis vinifera] | 0.648 | 0.616 | 0.617 | 2e-55 | |
| 449464106 | 436 | PREDICTED: uncharacterized protein LOC10 | 0.747 | 0.467 | 0.322 | 1e-18 | |
| 168027995 | 524 | predicted protein [Physcomitrella patens | 0.695 | 0.362 | 0.302 | 7e-18 | |
| 357505167 | 487 | hypothetical protein MTR_7g055730 [Medic | 0.619 | 0.347 | 0.313 | 2e-13 | |
| 297790788 | 479 | hypothetical protein ARALYDRAFT_497092 [ | 0.611 | 0.348 | 0.297 | 2e-13 | |
| 224069876 | 575 | predicted protein [Populus trichocarpa] | 0.501 | 0.238 | 0.328 | 2e-13 |
| >gi|224068434|ref|XP_002302744.1| predicted protein [Populus trichocarpa] gi|222844470|gb|EEE82017.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/270 (69%), Positives = 223/270 (82%)
Query: 1 MKSQLSCGEVDEYDPSGLVYCWWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL 60
MKSQ S + DE+ S L YCWWRSAAKFDECV+LK D+PN+++LTPR+RVLRE+ERLAL
Sbjct: 1 MKSQHSSNDEDEHQLSSLGYCWWRSAAKFDECVRLKSDIPNIASLTPRVRVLRELERLAL 60
Query: 61 IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120
I+ +GLNE+R+K YRSGDFW+P GGI+K MDIPPVITILL+GFSGSGKSSLVNLMYS
Sbjct: 61 ISHEGLNEVRYKLQMYRSGDFWVPTGGIKKEEMDIPPVITILLVGFSGSGKSSLVNLMYS 120
Query: 121 VLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELS 180
VL RSGL+ FAQTSSG +S TMYMEEHNVMRSLQ GFCVYDSRGF+Y ++ + LEELS
Sbjct: 121 VLGRSGLIPFAQTSSGCASKYTTMYMEEHNVMRSLQGGFCVYDSRGFSYGKIGDALEELS 180
Query: 181 SWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKA 240
SWMS+GVHHNQ CLRS D L+++DAE L+ S K+V R V+F+MVV NIAE+YKALKA
Sbjct: 181 SWMSDGVHHNQLCLRSGDDVLLEDDAETAGLRPSSKFVQRTVNFSMVVVNIAEVYKALKA 240
Query: 241 GDSKPLDATKRLFSAPGLRKCSKISFCILV 270
DSKPL+AT+ LF +PGLR C++ IL
Sbjct: 241 SDSKPLEATRELFHSPGLRNCNENPMLILT 270
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548537|ref|XP_002515325.1| ATP binding protein, putative [Ricinus communis] gi|223545805|gb|EEF47309.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/270 (67%), Positives = 224/270 (82%)
Query: 1 MKSQLSCGEVDEYDPSGLVYCWWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL 60
MK+QLS + D+Y PS ++YCWWRS AKF+EC +LKL LPN+S+LTPR+RVLRE+ERLAL
Sbjct: 1 MKNQLSSSDEDDYPPSRMLYCWWRSTAKFEECARLKLGLPNISSLTPRIRVLRELERLAL 60
Query: 61 IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120
I+ +GLNELR+K Y+SGD+W+P GGI+K MDIP VITILL+GFS SGKSSLVNLMYS
Sbjct: 61 ISHEGLNELRYKLQMYKSGDYWVPTGGIEKEEMDIPSVITILLVGFSSSGKSSLVNLMYS 120
Query: 121 VLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELS 180
VL R+GLV FAQTSSG + + TMYMEEHNVMRS+QSGFCV+DSRGFNY+++ E LEELS
Sbjct: 121 VLGRTGLVPFAQTSSGGAKNYTTMYMEEHNVMRSMQSGFCVFDSRGFNYDKIGEALEELS 180
Query: 181 SWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKA 240
SWM++GVHHNQ CLRS D L+K+D E +SS K+++RRV+ AMVV NIAE+YKALKA
Sbjct: 181 SWMTDGVHHNQLCLRSGDATLLKDDIEAAASRSSSKFLIRRVNCAMVVVNIAEVYKALKA 240
Query: 241 GDSKPLDATKRLFSAPGLRKCSKISFCILV 270
GDSK L+AT+ LF +P LRKC++ IL
Sbjct: 241 GDSKQLEATRELFCSPALRKCNENPILILT 270
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128396|ref|XP_002320319.1| predicted protein [Populus trichocarpa] gi|222861092|gb|EEE98634.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/270 (67%), Positives = 219/270 (81%)
Query: 1 MKSQLSCGEVDEYDPSGLVYCWWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL 60
MKSQLS + DE S L YCWWRSAAKFDECV+LKLDLP++++LTPRLRVL+E+ERLAL
Sbjct: 1 MKSQLSSNDEDECQLSRLGYCWWRSAAKFDECVRLKLDLPHIASLTPRLRVLKELERLAL 60
Query: 61 IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120
IA +GLNELR+K YRSGDFW+P GG++K MDIPPVITILL+GFSGSGKSSLVNLMYS
Sbjct: 61 IAHEGLNELRYKLQMYRSGDFWVPTGGLKKEEMDIPPVITILLVGFSGSGKSSLVNLMYS 120
Query: 121 VLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELS 180
V RSGL+ FA+TSSG ++ TMYMEEHNVMRS+Q GFCVYDSRGFNY ++ + LEELS
Sbjct: 121 VFGRSGLIPFARTSSGGATKYTTMYMEEHNVMRSMQGGFCVYDSRGFNYGKIGDALEELS 180
Query: 181 SWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKA 240
SWMS+G+HHNQ CLRS D L++ D E L+SS K+V R V+ MVV NIAE++KA KA
Sbjct: 181 SWMSDGIHHNQLCLRSGDDVLLEADTETVGLRSSSKFVQRTVNIPMVVVNIAEVHKASKA 240
Query: 241 GDSKPLDATKRLFSAPGLRKCSKISFCILV 270
DSKPL+AT+ LF +P LRKC++ IL
Sbjct: 241 SDSKPLEATRELFHSPALRKCNENPILILT 270
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359480106|ref|XP_003632400.1| PREDICTED: uncharacterized protein LOC100854991 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 319 bits (818), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 166/270 (61%), Positives = 207/270 (76%), Gaps = 1/270 (0%)
Query: 1 MKSQLSCGEVDEYDPSGLVYCWWRSAAKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL 60
MKSQ S D+Y+ LVYCWWRSA F E K K++LPNVSTLTP L++LRE+ERLAL
Sbjct: 1 MKSQFSSTYEDDYESLMLVYCWWRSAVTFGEAAKFKVELPNVSTLTPTLKLLRELERLAL 60
Query: 61 IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120
+A +GL+ELR K +SYRSGDFW+P GG+++ MDIPPVITILL+GFSGSGKSSLVNLMYS
Sbjct: 61 MAREGLSELRQKLVSYRSGDFWVPTGGMKREDMDIPPVITILLVGFSGSGKSSLVNLMYS 120
Query: 121 VLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELS 180
VL RSGL+ FA TSS NS+ T +MEEHNV+RS+QSGFCVYDSRG +Y+ + E +EE+S
Sbjct: 121 VLGRSGLIPFATTSSENSAKCTTKFMEEHNVLRSMQSGFCVYDSRGLDYDLMGESIEEVS 180
Query: 181 SWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALKA 240
WM+ GVHHNQ CLR+ D LM + + SS K+ R+V+ AMVV NIAEI+K+LK
Sbjct: 181 EWMTNGVHHNQLCLRTGD-NLMSEEELSEVPGSSSKFTPRKVNCAMVVVNIAEIFKSLKK 239
Query: 241 GDSKPLDATKRLFSAPGLRKCSKISFCILV 270
GD KPL+AT+ LF P L+KC++ I+
Sbjct: 240 GDWKPLEATRELFRCPALKKCNENPILIMT 269
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743947|emb|CBI36917.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/178 (61%), Positives = 136/178 (76%), Gaps = 1/178 (0%)
Query: 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVM 152
MDIPPVITILL+GFSGSGKSSLVNLMYSVL RSGL+ FA TSS NS+ T +MEEHNV+
Sbjct: 1 MDIPPVITILLVGFSGSGKSSLVNLMYSVLGRSGLIPFATTSSENSAKCTTKFMEEHNVL 60
Query: 153 RSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK 212
RS+QSGFCVYDSRG +Y+ + E +EE+S WM+ GVHHNQ CLR+ D LM + +
Sbjct: 61 RSMQSGFCVYDSRGLDYDLMGESIEEVSEWMTNGVHHNQLCLRTGD-NLMSEEELSEVPG 119
Query: 213 SSPKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSAPGLRKCSKISFCILV 270
SS K+ R+V+ AMVV NIAEI+K+LK GD KPL+AT+ LF P L+KC++ I+
Sbjct: 120 SSSKFTPRKVNCAMVVVNIAEIFKSLKKGDWKPLEATRELFRCPALKKCNENPILIMT 177
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464106|ref|XP_004149770.1| PREDICTED: uncharacterized protein LOC101208586 [Cucumis sativus] gi|449520910|ref|XP_004167475.1| PREDICTED: uncharacterized protein LOC101225331 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 114/214 (53%), Gaps = 10/214 (4%)
Query: 48 RLRVLREM----ERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILL 103
R RV RE+ ++L I + LN+ + K LSY G + +GG++ DIP +++L
Sbjct: 84 RNRVHREIIESYDQLR-IRSENLNQAKQKILSYSPGAWIEQVGGMKLSDYDIPQTTSLIL 142
Query: 104 MGFSGSGKSSLVNLMYSVLSRSGLV-LFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVY 162
+G GSGKSSL+N + V AQ S +S T ++ E+ ++R +S FC+Y
Sbjct: 143 IGPKGSGKSSLINRISKVFEEDHFAPERAQVSCNSSGEDGTFFLHEYMILRKSKS-FCLY 201
Query: 163 DSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK-YVLRR 221
D+RG + N + +E L WMS+GVHH + R D + + N +S P+ V+R
Sbjct: 202 DTRGLS-NDPSDNIEMLKQWMSKGVHHGKLVTRKSDASSLINRMRCKARQSFPRSRVVRI 260
Query: 222 VDFAMVVSNIAEIYKALKAGDSKPLDATKRLFSA 255
++F + V + + K++ GD K D + + +A
Sbjct: 261 INFVIFVVDGLSVLKSID-GDDKQKDYDRVITTA 293
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|168027995|ref|XP_001766514.1| predicted protein [Physcomitrella patens subsp. patens] gi|162682159|gb|EDQ68579.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
|---|
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 2/192 (1%)
Query: 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRS 125
+ E+R K Y G + + GG++K IP V T+L++G G+GKS+L+N + VL+
Sbjct: 185 IEEMRLKLQRYEPGQWLVESGGMRKSDFAIPEVTTLLVVGSMGAGKSTLINNLIRVLNNK 244
Query: 126 GLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE 185
G+ T ++ E+ + S ++ CV+DSRG +V +GLE L WM +
Sbjct: 245 SQDFDRAQVCGDPGENGTYFLNEYMLNES-KNNICVFDSRGMPELKVADGLEVLEDWMVK 303
Query: 186 GVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRR-VDFAMVVSNIAEIYKALKAGDSK 244
GV H Q +R+ D + +K E + K +R ++F + V N ++K +GD+
Sbjct: 304 GVRHGQMVIRTSDSSRVKEAVERKARQGHHKLSKKRHINFVIFVINATTVHKIRHSGDTL 363
Query: 245 PLDATKRLFSAP 256
R+F P
Sbjct: 364 SRPNFLRIFKFP 375
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Source: Physcomitrella patens subsp. patens Species: Physcomitrella patens Genus: Physcomitrella Family: Funariaceae Order: Funariales Class: Bryopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357505167|ref|XP_003622872.1| hypothetical protein MTR_7g055730 [Medicago truncatula] gi|355497887|gb|AES79090.1| hypothetical protein MTR_7g055730 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 16/185 (8%)
Query: 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRS 125
L + + K L YR G + G++ D+P +++L+G SGSGKSSL+N + V
Sbjct: 92 LKQAKEKILRYRPGTWIEKARGLKLRDYDVPETTSLILVGPSGSGKSSLINRISKVFDDD 151
Query: 126 GLVLFAQTSSGNSSHTI----TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSS 181
FA T + S +++ T ++ EH + R S C+YD+R + N+ HE E L +
Sbjct: 152 K---FAPTRAQVSYNSLRGDGTYFLREHMIPRDSNS-ICLYDTRSLS-NKSHENNEMLKN 206
Query: 182 WMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVL----RRVDFAMVVSNIAEIYKA 237
WM+EGVHH + +RS D + E K + K R+V+F + V N +
Sbjct: 207 WMTEGVHHGELVIRSKDNQTL---TESLKCKGNKKGFFSSKSRKVNFVIYVLNGLSVLNM 263
Query: 238 LKAGD 242
++ D
Sbjct: 264 MENAD 268
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297790788|ref|XP_002863279.1| hypothetical protein ARALYDRAFT_497092 [Arabidopsis lyrata subsp. lyrata] gi|297309113|gb|EFH39538.1| hypothetical protein ARALYDRAFT_497092 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 8/175 (4%)
Query: 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRS 125
L + R++ L Y G + ++ D+P +I+L+G G+GKSSLVN + V+
Sbjct: 77 LRQARNEILRYTPGSW----SDVKLSDYDVPKTTSIMLVGPKGAGKSSLVNKISRVIEDD 132
Query: 126 GLV-LFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS 184
AQ S G S T +++E+ + R + FC+YD+RG ++ + + WM+
Sbjct: 133 EFFPARAQESFGTQSKGGTFFVQEYMIPRGGSASFCLYDTRGLSHISSSDNTRMIEQWMT 192
Query: 185 EGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNIAEIYKALK 239
+GVHH + + + D + +K D I D Y R+V+ + V N EI K+++
Sbjct: 193 KGVHHGEPVIWTSDSSDLK-DRLIRD--GGTGYERRKVNSVIFVINAVEILKSME 244
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224069876|ref|XP_002303066.1| predicted protein [Populus trichocarpa] gi|222844792|gb|EEE82339.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 79/140 (56%), Gaps = 3/140 (2%)
Query: 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRS 125
L E + K LSY G + + G++ D+P +L++G GSGKSSL+N + V
Sbjct: 123 LEEGKSKILSYTPGGWMENVIGMKLSDFDVPNTTVLLVIGPKGSGKSSLINRISKVFEDD 182
Query: 126 GLV-LFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMS 184
AQ S +S+ T +++E+ + RS S FC+YD+RG +Y+ ++ L +W++
Sbjct: 183 KFASERAQVSYNSSAADGTYFLQEYMIPRS-SSSFCLYDTRGLSYDS-YDSANMLKNWIT 240
Query: 185 EGVHHNQRCLRSDDCALMKN 204
+GVHH + +R D + ++N
Sbjct: 241 KGVHHRELIIRPSDNSHLRN 260
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 273 | ||||||
| TAIR|locus:2123236 | 481 | AT4G13030 [Arabidopsis thalian | 0.681 | 0.386 | 0.293 | 5.1e-16 |
| TAIR|locus:2123236 AT4G13030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 5.1e-16, P = 5.1e-16
Identities = 57/194 (29%), Positives = 97/194 (50%)
Query: 51 VLREMERLALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSG 110
+L+ + L + L + R++ LSY G W ++ +IP +I+L+G G+G
Sbjct: 63 ILQSHDLLLRTSKRKLRQARNEILSYTPGS-W---SDVKLSDYNIPKTTSIMLVGPKGAG 118
Query: 111 KSSLVNLMYSVLSRSGLVLF-AQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNY 169
KSSLVN + V+ +L AQ S G S T +++E+ + R + FC+YD+RG +
Sbjct: 119 KSSLVNKITRVIEDDAFLLDRAQESFGTPSKGGTYFVQEYMISRGGSASFCLYDTRGLSR 178
Query: 170 NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS 229
+ + WM+ GV H + + + D + +K D I D Y R+V+ + V
Sbjct: 179 ISSSDNTSMIEQWMTRGVLHGEPVIWASDSSDLK-DRLIRD--GGTGYERRKVNSIIFVV 235
Query: 230 NIAEIYKALKAGDS 243
N EI K+++ S
Sbjct: 236 NAVEILKSMECETS 249
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.413 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 273 273 0.0010 114 3 11 22 0.46 33
32 0.40 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 614 (65 KB)
Total size of DFA: 213 KB (2119 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.89u 0.20s 24.09t Elapsed: 00:00:01
Total cpu time: 23.89u 0.20s 24.09t Elapsed: 00:00:01
Start: Sat May 11 07:51:50 2013 End: Sat May 11 07:51:51 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 273 | |||
| TIGR00157 | 245 | TIGR00157, TIGR00157, ribosome small subunit-depen | 0.002 | |
| COG1162 | 301 | COG1162, COG1162, Predicted GTPases [General funct | 0.002 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 0.004 |
| >gnl|CDD|232848 TIGR00157, TIGR00157, ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.002
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
+ G SG GKSSL+N + + + V + G HT T H + G
Sbjct: 122 ISVFAGQSGVGKSSLINALDPSVKQQ--VNDISSKLGLGKHTTT-----HVELFHFHGGL 174
Query: 160 CVYDSRGFN 168
+ D+ GFN
Sbjct: 175 -IADTPGFN 182
|
Members of this protein were designated YjeQ and are now designated RsgA (ribosome small subunit-dependent GTPase A). The strongest motif in the alignment of these proteins is GXSGVGKS[ST], a classic P-loop for nucleotide binding. This protein has been shown to cleave GTP and remain bound to GDP. A role as a regulator of translation has been suggested. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option) [Protein synthesis, Translation factors]. Length = 245 |
| >gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 13/72 (18%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSS---HTITMYMEEHNVMRSLQ 156
+L+G SG GKS+L+N + L S HT T H + L
Sbjct: 166 ITVLLGQSGVGKSTLINAL-----LPELNQKTGEISEKLGRGRHTTT-----HVELFPLP 215
Query: 157 SGFCVYDSRGFN 168
G + D+ GF
Sbjct: 216 GGGWIIDTPGFR 227
|
Length = 301 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.004
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 13/72 (18%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSS---HTITMYMEEHNVMRSLQ 156
T +L G SG GKS+L+N + L L S HT T H + L
Sbjct: 37 TSVLAGQSGVGKSTLLNAL-----LPELDLRTGEISEKLGRGRHTTT-----HVELFPLP 86
Query: 157 SGFCVYDSRGFN 168
G + D+ GF
Sbjct: 87 GGGLLIDTPGFR 98
|
Length = 161 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 273 | |||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.98 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.98 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.98 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.97 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.97 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.97 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.97 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.97 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.97 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.97 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.97 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.97 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.97 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.97 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.97 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.97 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.96 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.96 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.96 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.96 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.96 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.96 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.95 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.95 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.95 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.94 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.93 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.93 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.92 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.91 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.9 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.9 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.9 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.89 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.89 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.88 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.88 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.86 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.85 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.85 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.85 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.84 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.84 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.84 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.83 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.83 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.82 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.82 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.82 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.8 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.79 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.79 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.79 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.78 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.77 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.75 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.73 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.69 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.68 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.67 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.67 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.66 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.65 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.65 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.63 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.61 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.59 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.59 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.59 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.58 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.55 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.49 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.44 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.38 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.38 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.37 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.35 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.34 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.3 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.29 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.26 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.25 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.21 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.2 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.13 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.12 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.07 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.07 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.05 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.04 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.04 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.03 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 99.03 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.89 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.8 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.8 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.76 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.7 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.69 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.68 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 98.68 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 98.63 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.6 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.58 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 98.54 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.51 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.5 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.5 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.49 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 98.47 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 98.43 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.42 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 98.39 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.37 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.37 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.36 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.35 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 98.34 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.34 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 98.32 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.32 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.32 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.31 | |
| PRK07960 | 455 | fliI flagellum-specific ATP synthase; Validated | 98.27 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.26 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.26 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 98.25 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.24 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 98.24 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 98.24 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.24 | |
| TIGR03497 | 413 | FliI_clade2 flagellar protein export ATPase FliI. | 98.2 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.19 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.19 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 98.18 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 98.17 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.17 | |
| TIGR03498 | 418 | FliI_clade3 flagellar protein export ATPase FliI. | 98.17 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 98.15 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 98.13 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.11 | |
| PRK08472 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.1 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 98.1 | |
| PRK05922 | 434 | type III secretion system ATPase; Validated | 98.09 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.09 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.09 | |
| TIGR03496 | 411 | FliI_clade1 flagellar protein export ATPase FliI. | 98.08 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 98.07 | |
| PF13476 | 202 | AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V | 98.07 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 98.07 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 98.06 | |
| PRK05688 | 451 | fliI flagellum-specific ATP synthase; Validated | 98.06 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.06 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.06 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 98.04 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.03 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.02 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 98.01 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 97.99 |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-49 Score=339.79 Aligned_cols=184 Identities=18% Similarity=0.281 Sum_probs=159.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC------CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG------NS 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~------~~ 138 (273)
+|+++|++++| |+..+ |++||++|++||+++|+||||||||||||||++|.+ ++|+|+++|.++. ..
T Consensus 2 mi~i~~l~K~f--g~~~V----Lkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~ 75 (240)
T COG1126 2 MIEIKNLSKSF--GDKEV----LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKL 75 (240)
T ss_pred eEEEEeeeEEe--CCeEE----ecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHH
Confidence 68999999999 56777 999999999999999999999999999999999999 9999999998664 36
Q ss_pred CccEEEEeccchhhhccCCcccccccc--------cCCHHH----HHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSR--------GFNYNR----VHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~--------~~~~~~----~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
|+++|+|||+.++||++ ||.||. +.++++ +.+.|++++ .+||||||||. |+
T Consensus 76 R~~vGmVFQ~fnLFPHl----TvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARAL 151 (240)
T COG1126 76 RRKVGMVFQQFNLFPHL----TVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL 151 (240)
T ss_pred HHhcCeecccccccccc----hHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHH
Confidence 88999999999997776 999992 344444 445566666 78999999987 44
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
+.+|+++|+|||||+|||+ +.++.++++ |+|+++| +.||||++|++|++++.|+++++|.+|..+
T Consensus 152 aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e-GmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~ 230 (240)
T COG1126 152 AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSE 230 (240)
T ss_pred cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCH
Confidence 7899999999999999999 557788877 9999999 568999999999999999999999877544
Q ss_pred H
Q 024032 260 K 260 (273)
Q Consensus 260 ~ 260 (273)
+
T Consensus 231 R 231 (240)
T COG1126 231 R 231 (240)
T ss_pred H
Confidence 3
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=340.69 Aligned_cols=195 Identities=19% Similarity=0.242 Sum_probs=170.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
.++++|++++|. ++++ |+++||++++|++++|+||||||||||||+|+|+++ .+|+|+++|+++.. +.
T Consensus 2 ~L~~~~ls~~y~--~~~i----l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 2 MLEVENLSFGYG--GKPI----LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75 (258)
T ss_pred eeEEEEEEEEEC--CeeE----EecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHh
Confidence 578999999994 6778 999999999999999999999999999999999999 99999999999864 56
Q ss_pred ccEEEEeccchhhhccCCccccccccc---------------CCHHHHHHHHHHhc---------ccCCHHHHHHH---H
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRG---------------FNYNRVHEGLEELS---------SWMSEGVHHNQ---R 192 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~---------------~~~~~~~~~l~~~~---------~~LSgGqkq~~---r 192 (273)
++++|++|.+.. .+++||+|... .+.+.+.++++.++ .+||||||||. |
T Consensus 76 k~ia~vpQ~~~~----~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAr 151 (258)
T COG1120 76 KKLAYVPQSPSA----PFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIAR 151 (258)
T ss_pred hhEEEeccCCCC----CCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHH
Confidence 889999999864 67779998611 12345777888877 78999999986 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHHH------HHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 193 C-LRSDDCALMKNDAEIDDLKS------SPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~~------~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+ +++|++|||||||++||+.+ .++++.++.|+|||++ ++||++++|++|++++.|+|+++++.+.
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~ 231 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEEN 231 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHH
Confidence 4 79999999999999999994 4567776779999999 7799999999999999999999999999
Q ss_pred hHHHhCCceEEEE
Q 024032 258 LRKCSKISFCILV 270 (273)
Q Consensus 258 l~~~~~~~~~~~~ 270 (273)
+.++|++++.+..
T Consensus 232 l~~Vygv~~~~~~ 244 (258)
T COG1120 232 LREVYGVDADVIE 244 (258)
T ss_pred HHHHhCCceEEEE
Confidence 9999999977664
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=329.30 Aligned_cols=189 Identities=17% Similarity=0.251 Sum_probs=163.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
+|+++||+|+|. ++.+ ++++||+|++||++++||||||||||+||+|++|++ ++|+|+++|+++.+ +|
T Consensus 1 MI~~~nvsk~y~--~~~a----v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LR 74 (309)
T COG1125 1 MIEFENVSKRYG--NKKA----VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELR 74 (309)
T ss_pred CceeeeeehhcC--Ccee----eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHH
Confidence 479999999995 5666 999999999999999999999999999999999999 99999999999974 78
Q ss_pred ccEEEEeccchhhhccCCcccccccc-------cCCHHH----HHHHHHHhc-----------ccCCHHHHHHH---Hh-
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSR-------GFNYNR----VHEGLEELS-----------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~-------~~~~~~----~~~~l~~~~-----------~~LSgGqkq~~---r~- 193 (273)
++||||.|+..+||++ ||.+|. ++++++ +++.++.++ ++|||||+||+ |+
T Consensus 75 r~IGYviQqigLFPh~----Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RAL 150 (309)
T COG1125 75 RKIGYVIQQIGLFPHL----TVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL 150 (309)
T ss_pred HhhhhhhhhcccCCCc----cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHH
Confidence 9999999999987765 999993 445544 455555555 78999999996 55
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh--
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG-- 257 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~-- 257 (273)
+.+|++|||||||++|||. +.++++.++.|+||++| +++|||++|++|+++..++|++++.+|.
T Consensus 151 AadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~ 230 (309)
T COG1125 151 AADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAND 230 (309)
T ss_pred hcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHH
Confidence 7899999999999999999 34667888889999999 6789999999999999999999998765
Q ss_pred -hHHHhCC
Q 024032 258 -LRKCSKI 264 (273)
Q Consensus 258 -l~~~~~~ 264 (273)
++..+|.
T Consensus 231 FV~~f~g~ 238 (309)
T COG1125 231 FVEDFFGE 238 (309)
T ss_pred HHHHHhcc
Confidence 4444454
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-46 Score=333.78 Aligned_cols=185 Identities=21% Similarity=0.284 Sum_probs=160.7
Q ss_pred ceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 66 LNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
+|++++|+|.|..+ +..+ .+|+||||+|++||++||||+||||||||+|+|++|.+ ++|+|.++|+++..
T Consensus 1 mI~l~~vsK~~~~~~~~~~--~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~L 78 (339)
T COG1135 1 MIELENVSKTFGQTGTGTV--TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAEL 78 (339)
T ss_pred CeEEEeeeeeeccCCCCce--eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHH
Confidence 48999999999763 2223 35999999999999999999999999999999999999 99999999988863
Q ss_pred --CCccEEEEeccchhhhccCCcccccccccC-------CHH----HHHHHHHHhc---------ccCCHHHHHHH---H
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NYN----RVHEGLEELS---------SWMSEGVHHNQ---R 192 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~~----~~~~~l~~~~---------~~LSgGqkq~~---r 192 (273)
.|++||++||++++ +...||++|..+ +++ ++.+.++.++ .+||||||||+ |
T Consensus 79 r~~R~~IGMIFQhFnL----LssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIAR 154 (339)
T COG1135 79 RQLRQKIGMIFQHFNL----LSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIAR 154 (339)
T ss_pred HHHHhhccEEeccccc----cccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHH
Confidence 57889999999997 455699999533 333 4556677666 78999999987 5
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
| +.+|++||.|||||+|||. +++++++++.|.||++| ++|||++||++|++++.|+..++|.+|
T Consensus 155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~P 233 (339)
T COG1135 155 ALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP 233 (339)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCc
Confidence 5 7899999999999999999 56788999999999999 679999999999999999999999876
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=319.57 Aligned_cols=191 Identities=17% Similarity=0.160 Sum_probs=165.9
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCC--cc
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSS--HT 141 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~--~~ 141 (273)
..++++|++++|.++ ++ |+||||+|++|++++||||||||||||+|+|+|+++ .+|+|.+.|+++...+ .+
T Consensus 3 ~~i~v~nl~v~y~~~--~v----l~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~ 76 (254)
T COG1121 3 PMIEVENLTVSYGNR--PV----LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLR 76 (254)
T ss_pred cEEEEeeeEEEECCE--ee----eeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCe
Confidence 368999999999643 57 999999999999999999999999999999999999 9999999999887644 78
Q ss_pred EEEEeccchhhhccCCccccccccc---------------CCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRG---------------FNYNRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~---------------~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
||||+|.... . ..|+.||+|... .+.+.+.++|++++ .+|||||+||. ||
T Consensus 77 IgYVPQ~~~~-d-~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL 154 (254)
T COG1121 77 IGYVPQKSSV-D-RSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARAL 154 (254)
T ss_pred EEEcCccccc-C-CCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHh
Confidence 9999997732 2 267889998621 13478899999998 78999999986 44
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
+++|++|+|||||+|+|+. +++++++++ |+||++| .++|+|++|+ +++.+.|+++++++.+.+.
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~~~~l~ 232 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLTEENLE 232 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccCHHHHH
Confidence 7999999999999999999 557888888 9999999 6689999995 6889999999999999999
Q ss_pred HHhCCc
Q 024032 260 KCSKIS 265 (273)
Q Consensus 260 ~~~~~~ 265 (273)
..|+..
T Consensus 233 ~~~g~~ 238 (254)
T COG1121 233 KAFGGS 238 (254)
T ss_pred HHhCcc
Confidence 999843
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-44 Score=312.14 Aligned_cols=190 Identities=20% Similarity=0.293 Sum_probs=163.4
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
...|++++++++| |++.| ++++||+|++||+++|+||||||||||+|+|.|+++ ++|+|+++|+++..
T Consensus 6 ~~~I~vr~v~~~f--G~~~I----ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~ 79 (263)
T COG1127 6 EPLIEVRGVTKSF--GDRVI----LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79 (263)
T ss_pred cceEEEeeeeeec--CCEEE----ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHH
Confidence 4579999999998 67888 999999999999999999999999999999999999 99999999999863
Q ss_pred ---CCccEEEEeccchhhhccCCcccccccccC--------CHHHHH----HHHHHhc----------ccCCHHHHHHH-
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NYNRVH----EGLEELS----------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~~~~~----~~l~~~~----------~~LSgGqkq~~- 191 (273)
.++++|++||+..+| ..+||+||..+ ++..++ ..++.++ ++|||||++|.
T Consensus 80 ~~~ir~r~GvlFQ~gALF----ssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRva 155 (263)
T COG1127 80 LYEIRKRMGVLFQQGALF----SSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVA 155 (263)
T ss_pred HHHHHhheeEEeeccccc----cccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHH
Confidence 567899999999974 55699999654 333333 3444444 89999999876
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|| +.+|+||++||||+||||. ++++++++..|.|+++| ++|||++++.+|+|+..|+++++.+
T Consensus 156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 44 7899999999999999999 67888998889999999 6689999999999999999999985
Q ss_pred --ChhhHHHhC
Q 024032 255 --APGLRKCSK 263 (273)
Q Consensus 255 --~~~l~~~~~ 263 (273)
+|.+.++++
T Consensus 236 sd~P~v~qf~~ 246 (263)
T COG1127 236 SDDPWVRQFFN 246 (263)
T ss_pred CCCHHHHHHhc
Confidence 466766664
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=313.90 Aligned_cols=190 Identities=19% Similarity=0.263 Sum_probs=165.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
.|+++|++++|+ +++.+ |++|||+|++||++|||||||||||||||+|+|+.+ ++|+|.++|.++..
T Consensus 3 ~i~~~nl~k~yp-~~~~a----L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr 77 (258)
T COG3638 3 MIEVKNLSKTYP-GGHQA----LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77 (258)
T ss_pred eEEEeeeeeecC-CCcee----eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHH
Confidence 689999999998 45566 999999999999999999999999999999999999 99999999987753
Q ss_pred -CCccEEEEeccchhhhccCCcccccccc----------------cCC---HHHHHHHHHHhc---------ccCCHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSR----------------GFN---YNRVHEGLEELS---------SWMSEGVH 188 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~----------------~~~---~~~~~~~l~~~~---------~~LSgGqk 188 (273)
+|+++||+||++++.+++ +|++|. .++ +..+.++|++++ .+|||||+
T Consensus 78 ~~r~~iGmIfQ~~nLv~r~----sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQ 153 (258)
T COG3638 78 KLRRDIGMIFQQFNLVPRL----SVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQ 153 (258)
T ss_pred HHHHhceeEeccCCccccc----HHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchh
Confidence 568899999999986554 899882 122 344567777777 88999999
Q ss_pred HHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChh
Q 024032 189 HNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATK 250 (273)
Q Consensus 189 q~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~ 250 (273)
||+ |+ +++|+++|.|||+++|||. +.+++++++.|.|+|+. ++||||+-|++|+|+.+|++.
T Consensus 154 QRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~ 233 (258)
T COG3638 154 QRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPAS 233 (258)
T ss_pred HHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChh
Confidence 997 44 7899999999999999999 55788888889999999 789999999999999999999
Q ss_pred hhccChhhHHHhCCc
Q 024032 251 RLFSAPGLRKCSKIS 265 (273)
Q Consensus 251 ~l~~~~~l~~~~~~~ 265 (273)
+ +++..+.++|+.+
T Consensus 234 e-l~~~~~~~iYg~~ 247 (258)
T COG3638 234 E-LTDEALDEIYGNE 247 (258)
T ss_pred h-hhHHHHHHHhccc
Confidence 9 4777889999864
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=325.96 Aligned_cols=183 Identities=22% Similarity=0.313 Sum_probs=157.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
.++++|++++|.. ..+ |+++||+|++||+++|+||||||||||||+|+||.+ ++|+|.|+|+++++ ..|.
T Consensus 3 ~i~l~~v~K~yg~--~~~----l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~ 76 (338)
T COG3839 3 ELELKNVRKSFGS--FEV----LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRG 76 (338)
T ss_pred EEEEeeeEEEcCC--cee----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCC
Confidence 6899999999953 225 999999999999999999999999999999999999 99999999999986 4578
Q ss_pred EEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
+++|||+..+||++ ||++|..+ ++ +++.++++.++ .+||||||||+ |+ +++|
T Consensus 77 iamVFQ~yALyPhm----tV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P 152 (338)
T COG3839 77 IAMVFQNYALYPHM----TVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKP 152 (338)
T ss_pred EEEEeCCccccCCC----cHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCC
Confidence 99999999986665 99999543 23 34555555555 88999999987 44 7999
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+++|||||+|+||.. ..++++.++.|.|+|+| .++|||+||++|+|.+.|+|.+++.+|.-
T Consensus 153 ~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 153 KVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred CEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 999999999999999 34677888889999999 66899999999999999999999987653
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=354.48 Aligned_cols=219 Identities=16% Similarity=0.224 Sum_probs=184.8
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhh--------ccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCc
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLA--------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVI 99 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge 99 (273)
....+...-.++++...+..|+.++++.+++. .+...+.++++|++|+|...+.++ |+|+||+|++||
T Consensus 425 pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~~v----L~~isL~I~~Ge 500 (709)
T COG2274 425 PITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPV----LEDLSLEIPPGE 500 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCcch----hhceeEEeCCCC
Confidence 34456666688999999999999999977642 112246799999999998766667 999999999999
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFN 168 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~ 168 (273)
++||+|+||||||||+|+|.|+|+ ++|+|.+||.|+.. +|+.+++|+|++.+ |..|++||. ..+
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~L-----f~gSI~eNi~l~~p~~~ 575 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFL-----FSGSIRENIALGNPEAT 575 (709)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchh-----hcCcHHHHHhcCCCCCC
Confidence 999999999999999999999999 99999999999864 78999999999984 556999993 446
Q ss_pred HHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHH
Q 024032 169 YNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYV 218 (273)
Q Consensus 169 ~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l 218 (273)
.+++.++++.++ ..||||||||. |+ +++|+|||||||||+||+. +.+.++
T Consensus 576 ~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~ 655 (709)
T COG2274 576 DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI 655 (709)
T ss_pred HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHH
Confidence 677877777766 56999999986 55 8999999999999999999 224444
Q ss_pred HhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 219 LRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 219 ~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
.+ |+|+|+| +.||||+||++|+|+++|+++++++...
T Consensus 656 ~~--~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g 699 (709)
T COG2274 656 LQ--GRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGG 699 (709)
T ss_pred hc--CCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcC
Confidence 43 7888888 6799999999999999999999987543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=328.89 Aligned_cols=184 Identities=20% Similarity=0.311 Sum_probs=160.0
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCc
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSH 140 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~ 140 (273)
..++++|++++|. +..+ |+|+||+|++||+++|+||||||||||||+|+|+.. ++|+|.++|+++.. .+|
T Consensus 4 ~~l~i~~v~k~yg--~~~a----v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR 77 (352)
T COG3842 4 PALEIRNVSKSFG--DFTA----VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKR 77 (352)
T ss_pred ceEEEEeeeeecC--CeeE----EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhc
Confidence 4789999999995 5666 999999999999999999999999999999999999 99999999999975 567
Q ss_pred cEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~ 195 (273)
.+++|||+..+||++ ||+||..+ .. +++.++++.++ .+||||||||+ |+ +.
T Consensus 78 ~ig~VFQ~YALFPHl----tV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~ 153 (352)
T COG3842 78 PIGMVFQSYALFPHM----TVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVP 153 (352)
T ss_pred ccceeecCcccCCCC----cHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhc
Confidence 899999999997776 99999432 22 35666777766 88999999987 44 67
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+|++||||||+|+||.. ..++++.++.|+|.|+| .++|||+||++|+|...|+|++++..|.-
T Consensus 154 ~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~ 230 (352)
T COG3842 154 EPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPAT 230 (352)
T ss_pred CcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcch
Confidence 99999999999999999 23566777779999999 56899999999999999999999987753
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=344.57 Aligned_cols=216 Identities=17% Similarity=0.213 Sum_probs=183.4
Q ss_pred hhhhhhccchhhhhhhhHHHHHHHhchhhh------cc-CCCCceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcEE
Q 024032 30 DECVKLKLDLPNVSTLTPRLRVLREMERLA------LI-APDGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~------~~-~~~~~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
..+...-.++-++..+.+|++++++.+|.- .+ ...+.|+|+||+|+|+.. +.+| |+|+||+|+|||++
T Consensus 422 ~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~V----lk~lsfti~pGe~v 497 (716)
T KOG0058|consen 422 SGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDVPV----LKNLSFTIRPGEVV 497 (716)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCchh----hcCceeeeCCCCEE
Confidence 344455566778899999999999977631 11 245789999999999865 3345 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHH
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYN 170 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~ 170 (273)
|||||||+||||+.++|.++|. ++|+|.+||.|+++ ++++|++|-|+|.+ |+.||.||. ..+++
T Consensus 498 ALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvL-----Fs~sI~eNI~YG~~~~t~e 572 (716)
T KOG0058|consen 498 ALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVL-----FSGSIRENIAYGLDNATDE 572 (716)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeecccee-----ecccHHHHHhcCCCCCCHH
Confidence 9999999999999999999999 99999999999985 67899999999994 566999994 34678
Q ss_pred HHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHh
Q 024032 171 RVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLR 220 (273)
Q Consensus 171 ~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~ 220 (273)
++..++++++ .+||||||||. || +++|.||||||.||+||.+ +.+.++.+
T Consensus 573 ~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~ 652 (716)
T KOG0058|consen 573 EIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ 652 (716)
T ss_pred HHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc
Confidence 8888888776 58999999987 44 8999999999999999999 23444444
Q ss_pred cCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 221 RVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 221 ~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
++|||+| +.||+|+|+++|++++.|+++|+++.+
T Consensus 653 --~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~ 693 (716)
T KOG0058|consen 653 --GRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKP 693 (716)
T ss_pred --CCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCc
Confidence 7899998 779999999999999999999999877
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-43 Score=300.54 Aligned_cols=183 Identities=20% Similarity=0.298 Sum_probs=152.1
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-----ccEEEECCeeCCC-
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGN- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-----~G~I~i~g~~i~~- 137 (273)
..++++|+++.| |++.+ |++||++|++++++|||||||||||||||+++++.. . +|+|.++|+++.+
T Consensus 6 ~~~~~~~l~~yY--g~~~a----L~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 6 PAIEVRDLNLYY--GDKHA----LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred ceeEecceeEEE--Cchhh----hccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence 468899999998 45555 999999999999999999999999999999999876 3 5999999999863
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc-------------ccCCHHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~-------------~~LSgGq 187 (273)
+|+++|+|||.|+. |.+||+||..+ . ++.+++.|+.+. ..|||||
T Consensus 80 ~~d~~~lRr~vGMVFQkPnP-----Fp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQ 154 (253)
T COG1117 80 KVDVVELRRRVGMVFQKPNP-----FPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQ 154 (253)
T ss_pred CCCHHHHHHHheeeccCCCC-----CCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhH
Confidence 68999999999995 45699999321 1 122444444443 6699999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
|||. |+ +.+|++||||||||+|||. +++.+|.+ .-||+|| +.+|+.+++..|++++.|++
T Consensus 155 QQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T 232 (253)
T COG1117 155 QQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPT 232 (253)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCH
Confidence 9997 44 6799999999999999999 45667765 6899998 55799999999999999999
Q ss_pred hhhccChhhHH
Q 024032 250 KRLFSAPGLRK 260 (273)
Q Consensus 250 ~~l~~~~~l~~ 260 (273)
+++|.+|..++
T Consensus 233 ~~iF~~P~~~~ 243 (253)
T COG1117 233 DKIFTNPKHKR 243 (253)
T ss_pred HhhhcCccHHH
Confidence 99999876544
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=303.12 Aligned_cols=168 Identities=19% Similarity=0.222 Sum_probs=145.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
.+++++++++|.. ..+ |+|+||+|++||+++||||||||||||||+|+|+.+ ++|+|.++|+.+......++|
T Consensus 3 ~l~i~~v~~~f~~--~~v----l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~ 76 (248)
T COG1116 3 LLEIEGVSKSFGG--VEV----LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGY 76 (248)
T ss_pred eEEEEeeEEEeCc--eEE----eccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEE
Confidence 5789999999954 566 999999999999999999999999999999999999 999999999999777888999
Q ss_pred EeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
+||++.++|+. ||+||..+ + .+.+.+.++.++ .+||||||||. |+ +.+|++|
T Consensus 77 vFQ~~~LlPW~----Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lL 152 (248)
T COG1116 77 VFQEDALLPWL----TVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLL 152 (248)
T ss_pred EeccCcccchh----hHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEE
Confidence 99999987765 99999432 1 235677788777 88999999987 44 7899999
Q ss_pred EEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC--CeE
Q 024032 201 LMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKA--GDS 243 (273)
Q Consensus 201 lLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~--G~i 243 (273)
|||||+++||.. +.+.++.++.++||++| .++|||++|.+ |+|
T Consensus 153 LlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 153 LLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred EEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 999999999999 33556677778999999 45799999999 545
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=294.02 Aligned_cols=187 Identities=17% Similarity=0.247 Sum_probs=157.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
++++++++..| |...+ |++|||++++||+++|+||||||||||||+|+|+.+ .+|+|.++|++++. .
T Consensus 3 mL~v~~l~~~Y--G~~~~----L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~ 76 (237)
T COG0410 3 MLEVENLSAGY--GKIQA----LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERA 76 (237)
T ss_pred ceeEEeEeecc--cceeE----EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHH
Confidence 68999999988 44556 999999999999999999999999999999999999 99999999999975 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-----C-----HHHHHH----------HHHHhcccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-----N-----YNRVHE----------GLEELSSWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-----~-----~~~~~~----------~l~~~~~~LSgGqkq~~---r~-l 194 (273)
+.-+++|+|-..+|+.+ ||.||... . ...+++ ..++.+.+|||||||.. |+ +
T Consensus 77 r~Gi~~VPegR~iF~~L----TVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 77 RLGIAYVPEGRRIFPRL----TVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred hCCeEeCcccccchhhC----cHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHh
Confidence 46799999999986554 99999321 0 001222 33333389999999965 44 8
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHH
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRK 260 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~ 260 (273)
.+|++|+|||||.||-|. +.+++++++.|.||++| ++|||.+||++|+|+..|+.+++.+++.+.+
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~v~~ 232 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVRE 232 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHHHHH
Confidence 999999999999999999 56788887768899999 6789999999999999999999999988776
Q ss_pred Hh
Q 024032 261 CS 262 (273)
Q Consensus 261 ~~ 262 (273)
.|
T Consensus 233 ~y 234 (237)
T COG0410 233 AY 234 (237)
T ss_pred Hh
Confidence 65
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=298.01 Aligned_cols=173 Identities=21% Similarity=0.255 Sum_probs=144.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
+++++++++.|..++..+ .+|+++||+|++||+++|+|||||||||||++|.|+.+ ++|.|.++|+++..
T Consensus 1 ~i~~~~v~k~y~~~~~~~--~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~ 78 (226)
T COG1136 1 MIELKNVSKIYGLGGEKV--EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELA 78 (226)
T ss_pred CcEEeeeEEEeccCCcce--EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHH
Confidence 367999999998766543 34999999999999999999999999999999999999 99999999998863
Q ss_pred --CCccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc----------ccCCHHHHHHH---
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS----------SWMSEGVHHNQ--- 191 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~----------~~LSgGqkq~~--- 191 (273)
.++++||+||+.+++ ..+||.||..+ . .+.+.+.++.++ .+||||||||+
T Consensus 79 ~~R~~~iGfvFQ~~nLl----~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 79 KLRRKKIGFVFQNFNLL----PDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHHHHhEEEECccCCCC----CCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHH
Confidence 356799999999974 45599999432 1 234455556555 68999999987
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEe
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSK 244 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~ 244 (273)
|+ +.+|+++|.||||.+||.. +++++++++.|+|+|+| ..|||++.|.+|++.
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 44 7899999999999999999 45677877779999999 568999999999943
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=339.96 Aligned_cols=219 Identities=17% Similarity=0.206 Sum_probs=180.8
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc----c--CCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEE
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL----I--APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~----~--~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
.+..+...-..++.+..+.+|+.++++.+++.. . ...+.++++||+|+|+..++++ |+|+||+|++||.+
T Consensus 407 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~~v----L~~isl~i~~Ge~v 482 (686)
T TIGR03797 407 AVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRYRPDGPLI----LDDVSLQIEPGEFV 482 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEEEcCCCCccc----eeeeEEEECCCCEE
Confidence 345566666788899999999999987654311 0 1134699999999997555667 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc----CCHHH
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG----FNYNR 171 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~----~~~~~ 171 (273)
||+||||||||||+|+|+|+++ ++|+|.+||+++.+ +|+.+++++|++.+ |..|++||.. .++++
T Consensus 483 aIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-----f~gTI~eNi~~~~~~~~e~ 557 (686)
T TIGR03797 483 AIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRL-----MSGSIFENIAGGAPLTLDE 557 (686)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCcc-----CcccHHHHHhcCCCCCHHH
Confidence 9999999999999999999999 99999999999874 67889999999984 4569999942 46778
Q ss_pred HHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH---HHHHHHHhcCCc
Q 024032 172 VHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK---SSPKYVLRRVDF 224 (273)
Q Consensus 172 ~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~---~~l~~l~~~~g~ 224 (273)
+.++++.++ ..||||||||. |+ +++|++||||||||+||+. ...+.+.+. ++
T Consensus 558 i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~-~~ 636 (686)
T TIGR03797 558 AWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL-KV 636 (686)
T ss_pred HHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh-CC
Confidence 888887765 46999999986 55 8999999999999999999 233444443 68
Q ss_pred EEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 225 AMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 225 tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
|+|+| ..||+|++|++|++++.|+++++++..
T Consensus 637 T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~ 675 (686)
T TIGR03797 637 TRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMARE 675 (686)
T ss_pred eEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCC
Confidence 98888 558999999999999999999998643
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=334.42 Aligned_cols=216 Identities=14% Similarity=0.076 Sum_probs=175.9
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchhhhc------cC--CCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcE
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IA--PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVIT 100 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~------~~--~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~ 100 (273)
+..+......++++.++.+|+.++++.++... .. ....++++||+|.|.. ++++ |+|+||+|++|++
T Consensus 304 l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~-~~~v----L~~i~l~i~~G~~ 378 (588)
T PRK11174 304 LRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD-GKTL----AGPLNFTLPAGQR 378 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccC-CCee----eeeeEEEEcCCCE
Confidence 44555555677889999999999987653210 01 1235999999986643 4567 9999999999999
Q ss_pred EEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHH
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYN 170 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~ 170 (273)
+||+||||||||||+++|+|+++++|+|.++|.++.+ +++.+++++|++.+ |+.|++||. ..+++
T Consensus 379 vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~L-----F~~TI~eNI~~g~~~~~~e 453 (588)
T PRK11174 379 IALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQL-----PHGTLRDNVLLGNPDASDE 453 (588)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcC-----CCcCHHHHhhcCCCCCCHH
Confidence 9999999999999999999999989999999999874 57889999999984 556999993 35677
Q ss_pred HHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--H----HHHHHHh
Q 024032 171 RVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--S----SPKYVLR 220 (273)
Q Consensus 171 ~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~----~l~~l~~ 220 (273)
++.++++.++ ..||||||||. |+ +++|++||||||||+||+. . .+.++.+
T Consensus 454 ei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~ 533 (588)
T PRK11174 454 QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR 533 (588)
T ss_pred HHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC
Confidence 8888877655 56999999986 55 8999999999999999999 2 2333332
Q ss_pred cCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 221 RVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 221 ~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
++|+|+| ..||+|++|++|++++.|++++++++.
T Consensus 534 --~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~ 574 (588)
T PRK11174 534 --RQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAG 574 (588)
T ss_pred --CCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcc
Confidence 7898888 458999999999999999999998653
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=300.65 Aligned_cols=183 Identities=20% Similarity=0.219 Sum_probs=156.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC------CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG------NS 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~------~~ 138 (273)
.+++++++|+|..+ ..+ |+++||+|++|+.++|+||||||||||+++++|+++ ++|.|.++|.++. ..
T Consensus 3 ~i~~~~l~~~y~~~-~~~----l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~ 77 (235)
T COG1122 3 MIEAENLSFRYPGR-KAA----LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLEL 77 (235)
T ss_pred eEEEEEEEEEcCCC-cee----eeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHh
Confidence 68899999999765 556 999999999999999999999999999999999999 9999999998854 47
Q ss_pred CccEEEEeccchhhhccCCccccccc-------ccCCHHH----HHHHHHHhc---------ccCCHHHHHHHHh----c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDS-------RGFNYNR----VHEGLEELS---------SWMSEGVHHNQRC----L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en-------~~~~~~~----~~~~l~~~~---------~~LSgGqkq~~r~----l 194 (273)
++++|+|||++.. +++.-||.+. .+.+.++ +.++++.++ .+||||||||..+ +
T Consensus 78 ~~~vG~VfQnpd~---q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa 154 (235)
T COG1122 78 RQKVGLVFQNPDD---QLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLA 154 (235)
T ss_pred hcceEEEEECccc---ccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHH
Confidence 8999999999976 4777788874 3445444 455666666 7899999998743 6
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
.+|++||||||||+||+. +.++++.++.|+|+|++ .+||++++|++|+++.+|++++++++.
T Consensus 155 ~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 155 MGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 899999999999999999 44677777657899999 568999999999999999999998765
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=341.78 Aligned_cols=219 Identities=17% Similarity=0.190 Sum_probs=180.8
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc--------------cCCCCceEEEEEEEEeecCCeeeeccceeeeee
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL--------------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGM 93 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--------------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~ 93 (273)
.+..+...-..++.+..+.+|+.++++.+++.. ....+.++++|++|+|+..++++ |+|+||
T Consensus 425 p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~v----L~~isl 500 (710)
T TIGR03796 425 PVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPL----IENFSL 500 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCc----ccceeE
Confidence 345566666778899999999999987653211 01124699999999997655667 999999
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc--
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-- 165 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-- 165 (273)
+|++||.+||+||||||||||+|+|+|+++ ++|+|.+||.++.+ +|+.+++++|++.+ |..|++||.
T Consensus 501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-----f~gTi~eNi~l 575 (710)
T TIGR03796 501 TLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFL-----FEGTVRDNLTL 575 (710)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChh-----hhccHHHHhhC
Confidence 999999999999999999999999999999 99999999999864 67899999999985 455999994
Q ss_pred ---cCCHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH---HHH
Q 024032 166 ---GFNYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK---SSP 215 (273)
Q Consensus 166 ---~~~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~---~~l 215 (273)
..+++++.++++.++ ..||||||||. |+ +++|++||||||||+||+. ...
T Consensus 576 ~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~ 655 (710)
T TIGR03796 576 WDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIID 655 (710)
T ss_pred CCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHH
Confidence 345777877777665 56999999986 44 8999999999999999999 334
Q ss_pred HHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 216 KYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 216 ~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+.+.+. ++|+|+| ..||+|++|++|++++.|+++++++..
T Consensus 656 ~~l~~~-~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~ 702 (710)
T TIGR03796 656 DNLRRR-GCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVG 702 (710)
T ss_pred HHHHhc-CCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcC
Confidence 445543 8999888 458999999999999999999998543
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=314.43 Aligned_cols=183 Identities=19% Similarity=0.270 Sum_probs=153.2
Q ss_pred ceEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
+++++|++++|+.++ .++ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~----L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~ 76 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQA----LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76 (343)
T ss_pred CEEEEEEEEEECCCCcceEE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 478999999996432 356 999999999999999999999999999999999999 99999999998864
Q ss_pred ---CCccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ--- 191 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~--- 191 (273)
.++.++|++|++.++ ...||+||.. .+. +++.++++.++ .+||||||||.
T Consensus 77 l~~~r~~Ig~v~Q~~~l~----~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IA 152 (343)
T TIGR02314 77 LTKARRQIGMIFQHFNLL----SSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIA 152 (343)
T ss_pred HHHHhcCEEEEECCcccc----ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 256899999998763 4459999842 222 23556677765 68999999987
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
|+ +.+|++|||||||++||+. +.+++++++.|.|||++ ++||++++|++|++++.|++++++..+
T Consensus 153 RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p 232 (343)
T TIGR02314 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHP 232 (343)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCC
Confidence 44 7899999999999999999 44666766568999999 568999999999999999999998653
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=332.52 Aligned_cols=216 Identities=18% Similarity=0.186 Sum_probs=178.6
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchhhhc------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEE
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITIL 102 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~a 102 (273)
+..+...-..++.+.++.+|+.++++.++... ....+.++++|++|+|+. ++++ |+|+||++++||.+|
T Consensus 285 ~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y~~-~~~v----l~~is~~i~~Ge~va 359 (567)
T COG1132 285 ILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPG-KKPV----LKDISFSIEPGEKVA 359 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEcCC-CCcc----ccCceEEEcCCCEEE
Confidence 45556666777889999999999998755311 112356999999999964 4566 999999999999999
Q ss_pred EEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHHH
Q 024032 103 LMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYNR 171 (273)
Q Consensus 103 ivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~ 171 (273)
||||||||||||+++|.|+++ ++|+|.+||+++++ +|+++++|+|++.+ |..||++|. ..++++
T Consensus 360 iVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~L-----F~~TI~~NI~~g~~~at~ee 434 (567)
T COG1132 360 IVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL-----FSGTIRENIALGRPDATDEE 434 (567)
T ss_pred EECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEccccee-----ecccHHHHHhcCCCCCCHHH
Confidence 999999999999999999999 99999999999874 68899999999985 446999993 246678
Q ss_pred HHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhc
Q 024032 172 VHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRR 221 (273)
Q Consensus 172 ~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~ 221 (273)
+.++++.++ ..||||||||. |+ +++|++||||||||+||+. +.+..+.+
T Consensus 435 i~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~- 513 (567)
T COG1132 435 IEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK- 513 (567)
T ss_pred HHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc-
Confidence 888887764 57999999986 55 8999999999999999999 22333443
Q ss_pred CCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 222 VDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 222 ~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
++|+++| ..||+|+||++|++++.|+|+++++..
T Consensus 514 -~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~ 554 (567)
T COG1132 514 -GRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKG 554 (567)
T ss_pred -CCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcC
Confidence 6677777 459999999999999999999998754
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=295.42 Aligned_cols=186 Identities=18% Similarity=0.257 Sum_probs=155.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
+++++|+++.|..+...- .+|++|||+|.+||++||+|+||||||||.++|+|+.+ ++|+|.++|++... .
T Consensus 3 ~l~v~nl~~~y~~~~~~~--~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAF--HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred eEEEeceEEEecCCcchh--hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence 689999999997654322 34999999999999999999999999999999999999 99999999987654 4
Q ss_pred CccEEEEeccchhhhccCCcccccccc-------cC--CHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cC
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSR-------GF--NYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~-------~~--~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~ 195 (273)
++.+-+|||++..- +.+..||.+.. +. ..+++.++++.++ .+|||||+||. || ..
T Consensus 81 ~~~VQmVFQDp~~S--LnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~ 158 (252)
T COG1124 81 YRPVQMVFQDPYSS--LNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIP 158 (252)
T ss_pred ccceeEEecCCccc--cCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhcc
Confidence 67899999998632 23344666542 11 2345778888887 78999999987 44 67
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
+|++||||||||+||+. +++.++.++++.|.|+| .+||||+||++|++++.++.++++..
T Consensus 159 ~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred CCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 99999999999999999 45677888889999999 67999999999999999999999865
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=297.52 Aligned_cols=187 Identities=18% Similarity=0.236 Sum_probs=159.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS------ 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~------ 138 (273)
++++++++++| |+-.+ ++||||++++||++|||||||||||||+|+|+|+|+ ++|+|.++|+++..+
T Consensus 4 lL~v~~l~k~F--GGl~A----l~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~ia 77 (250)
T COG0411 4 LLEVRGLSKRF--GGLTA----VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIA 77 (250)
T ss_pred eeeeccceeec--CCEEE----EeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHH
Confidence 57899999998 66666 999999999999999999999999999999999999 999999999999753
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-------------------C----HHHHHHHHHHhc---------ccCCHH
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------------------N----YNRVHEGLEELS---------SWMSEG 186 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------------------~----~~~~~~~l~~~~---------~~LSgG 186 (273)
+.-++.-||...+|+ .+||.||... . .+++.+.|+.++ .+||+|
T Consensus 78 r~Gi~RTFQ~~rlF~----~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG 153 (250)
T COG0411 78 RLGIARTFQITRLFP----GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYG 153 (250)
T ss_pred hccceeecccccccC----CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChh
Confidence 345788899998754 5599999211 1 123445566665 789999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
||++. |+ +.+|++|+||||++||.+. +.++++.++.|.||++| ++||||+||+.|+++++|+
T Consensus 154 ~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~ 233 (250)
T COG0411 154 QQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233 (250)
T ss_pred HhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCC
Confidence 98875 44 7999999999999999999 45777887668999999 6799999999999999999
Q ss_pred hhhhccChhhHHHh
Q 024032 249 TKRLFSAPGLRKCS 262 (273)
Q Consensus 249 ~~~l~~~~~l~~~~ 262 (273)
|+++.++|.+.++|
T Consensus 234 P~eV~~dp~VieAY 247 (250)
T COG0411 234 PEEVRNNPRVIEAY 247 (250)
T ss_pred HHHHhcCHHhHHHh
Confidence 99999999988887
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=337.37 Aligned_cols=221 Identities=16% Similarity=0.168 Sum_probs=179.3
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc------c-CCCCceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCc
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL------I-APDGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVI 99 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~------~-~~~~~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge 99 (273)
.+..+.....+++++..+.+|+.++++.++... + ...+.++++||+|+|+.. ++++ |+|+||+|++||
T Consensus 433 ~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v----L~~isl~i~~Ge 508 (711)
T TIGR00958 433 AVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPV----LKGLTFTLHPGE 508 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCCCcc----ccCceEEEcCCC
Confidence 344556666778889999999999987654211 1 123469999999999743 3556 999999999999
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc-----CC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-----FN 168 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-----~~ 168 (273)
++||+||||||||||+++|+|+++ ++|+|.+||+++.+ +++++++++|++.+ |..|++||.. .+
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-----F~gTIreNI~~g~~~~~ 583 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVL-----FSGSVRENIAYGLTDTP 583 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccc-----cccCHHHHHhcCCCCCC
Confidence 999999999999999999999999 99999999999864 56789999999984 5569999942 35
Q ss_pred HHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHHHHhcC
Q 024032 169 YNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKYVLRRV 222 (273)
Q Consensus 169 ~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~l~~~~ 222 (273)
++++.++++.++ .+||||||||. |+ +++|++||||||||+||+. +.+.+.....
T Consensus 584 ~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~ 663 (711)
T TIGR00958 584 DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRA 663 (711)
T ss_pred HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccC
Confidence 677777777654 46999999987 44 8999999999999999998 3344433333
Q ss_pred CcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 223 DFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 223 g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
++|+|+| ..||+|++|++|+|++.|+|++++++..
T Consensus 664 ~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~ 705 (711)
T TIGR00958 664 SRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQG 705 (711)
T ss_pred CCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCC
Confidence 7899988 4589999999999999999999986543
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=313.01 Aligned_cols=192 Identities=15% Similarity=0.218 Sum_probs=162.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
.++++|++++|. ++.+ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. .+
T Consensus 3 ~L~~~nls~~y~--~~~v----L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~ 76 (402)
T PRK09536 3 MIDVSDLSVEFG--DTTV----LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76 (402)
T ss_pred eEEEeeEEEEEC--CEEE----EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHh
Confidence 589999999984 5667 999999999999999999999999999999999999 99999999998753 45
Q ss_pred ccEEEEeccchhhhccCCcccccccccC---------------CHHHHHHHHHHhc---------ccCCHHHHHHH---H
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF---------------NYNRVHEGLEELS---------SWMSEGVHHNQ---R 192 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~---------------~~~~~~~~l~~~~---------~~LSgGqkq~~---r 192 (273)
+++++++|++.+ ++.+|++||..+ +.+.+.++++.++ .+||||||||. |
T Consensus 77 ~~ig~v~q~~~l----~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IAr 152 (402)
T PRK09536 77 RRVASVPQDTSL----SFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLAR 152 (402)
T ss_pred cceEEEccCCCC----CCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 679999998775 456688887311 1234666777766 68999999987 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+ +++|++|||||||++||+. +.+++++++ |.|||++ ++||++++|++|+++..|+++++++.+.
T Consensus 153 AL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~-g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~~~ 231 (402)
T PRK09536 153 ALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADT 231 (402)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCcHH
Confidence 3 7999999999999999998 345666654 8899998 5689999999999999999999999999
Q ss_pred hHHHhCCceEE
Q 024032 258 LRKCSKISFCI 268 (273)
Q Consensus 258 l~~~~~~~~~~ 268 (273)
+.+.|+.+..+
T Consensus 232 l~~~~~~~~~v 242 (402)
T PRK09536 232 LRAAFDARTAV 242 (402)
T ss_pred HHHHhCCceEE
Confidence 99999876543
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=284.64 Aligned_cols=173 Identities=19% Similarity=0.247 Sum_probs=148.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
+|+|++|++.|+.| ..+ |+||||+|++||++-|+||||||||||+|+|.+..+ ++|+|+++|.++..
T Consensus 1 mI~f~~V~k~Y~~g-~~a----L~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP 75 (223)
T COG2884 1 MIRFENVSKAYPGG-REA----LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75 (223)
T ss_pred CeeehhhhhhcCCC-chh----hhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccc
Confidence 47899999999876 545 999999999999999999999999999999999999 99999999999863
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
+|++||+|||+..++ ...||+||..+ . .+++.++|+.++ .+||||||||. |+
T Consensus 76 ~LRR~IGvVFQD~rLL----~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARA 151 (223)
T COG2884 76 FLRRQIGVVFQDFRLL----PDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARA 151 (223)
T ss_pred hhhheeeeEeeecccc----ccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHH
Confidence 678999999999974 45599999533 2 345667777777 78999999987 44
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEce--------eCCEEEEEeCCeEeeecC
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVSN--------IAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv~--------~ad~i~vl~~G~i~~~g~ 248 (273)
+.+|++||.||||.+|||. .++.++++. |+||+|++ .-.|++.+++|+++.+..
T Consensus 152 iV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~-GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 152 IVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRL-GTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhc-CcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 7899999999999999999 446677765 99999993 347899999999987654
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=335.79 Aligned_cols=216 Identities=16% Similarity=0.167 Sum_probs=177.9
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc--------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCc
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL--------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVI 99 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge 99 (273)
.+..+...-..++.+..+.+|+.++++.+++.. ....+.++++|++|+|+.+++++ |+|+||+|++||
T Consensus 417 p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~v----L~~i~l~i~~G~ 492 (694)
T TIGR03375 417 PLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPA----LDNVSLTIRPGE 492 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCCCccc----eeeeeEEECCCC
Confidence 344555666778899999999999988654311 01124699999999997555567 999999999999
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFN 168 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~ 168 (273)
.+||+||||||||||+|+|+|+++ ++|+|.++|.++.+ +|+.+++++|++.+ |..|++||. ..+
T Consensus 493 ~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~l-----f~~TI~eNi~~~~~~~~ 567 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRL-----FYGTLRDNIALGAPYAD 567 (694)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhh-----hhhhHHHHHhCCCCCCC
Confidence 999999999999999999999999 99999999999864 57889999999985 455999983 356
Q ss_pred HHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHH
Q 024032 169 YNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYV 218 (273)
Q Consensus 169 ~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l 218 (273)
++++.++++.++ ..||||||||. |+ +++|++||||||||+||+. +.+.++
T Consensus 568 ~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~ 647 (694)
T TIGR03375 568 DEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRW 647 (694)
T ss_pred HHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 777877777665 46999999987 44 8999999999999999999 223344
Q ss_pred HhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 219 LRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 219 ~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
.+ ++|+|+| ..||+|++|++|++++.|+++++++
T Consensus 648 ~~--~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 648 LA--GKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred hC--CCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 33 7888888 5689999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=309.63 Aligned_cols=183 Identities=15% Similarity=0.267 Sum_probs=154.2
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCc
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSH 140 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~ 140 (273)
..++++|++++|. +..+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++
T Consensus 5 ~~l~~~~l~~~~~--~~~~----l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r 78 (351)
T PRK11432 5 NFVVLKNITKRFG--SNTV----IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR 78 (351)
T ss_pred cEEEEEeEEEEEC--CeEE----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHC
Confidence 4799999999994 4566 999999999999999999999999999999999999 99999999998864 347
Q ss_pred cEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~ 196 (273)
.+++++|++.+|++ +||+||..+ + .+++.++++.++ .+||||||||. |+ +.+
T Consensus 79 ~ig~vfQ~~~lfp~----~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~ 154 (351)
T PRK11432 79 DICMVFQSYALFPH----MSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILK 154 (351)
T ss_pred CEEEEeCCcccCCC----CCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 89999999987544 599998432 2 234555666655 78999999987 34 789
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
|++|||||||++||+. ..++++.++.|.|+|+| .+||+|++|++|++++.|++++++..|.
T Consensus 155 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 155 PKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 9999999999999999 33556666568999998 5689999999999999999999987654
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=291.85 Aligned_cols=186 Identities=16% Similarity=0.193 Sum_probs=159.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
.+.++|+.++| +++.| +++|||+|++||++||+|||||||||.+.++.|+.+ ++|.|.++|.+++. .
T Consensus 4 ~L~a~~l~K~y--~kr~V----v~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RA 77 (243)
T COG1137 4 TLVAENLAKSY--KKRKV----VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77 (243)
T ss_pred EEEehhhhHhh--CCeee----eeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHh
Confidence 57889999998 45777 999999999999999999999999999999999999 99999999999975 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-------C------HHHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N------YNRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~------~~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
|.-++|.+|++..|..+ ||.||... + ..++++.++.+. ..||||||+|. |+
T Consensus 78 rlGigYLpQE~SIFr~L----tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARa 153 (243)
T COG1137 78 RLGIGYLPQEASIFRKL----TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARA 153 (243)
T ss_pred hcCcccccccchHhhcC----cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHH
Confidence 45689999999987665 99999311 1 223446666665 78999999876 44
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+.+|+++||||||+|+||. .+++.|..+ |..|+|+ .+|||.+++.+|++.++|+++++.+++..
T Consensus 154 La~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~r-giGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~V 232 (243)
T COG1137 154 LAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR-GIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDV 232 (243)
T ss_pred HhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhC-CceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChhh
Confidence 7899999999999999999 445667665 9999999 67899999999999999999999999999
Q ss_pred HHHh
Q 024032 259 RKCS 262 (273)
Q Consensus 259 ~~~~ 262 (273)
.++|
T Consensus 233 r~~Y 236 (243)
T COG1137 233 RRVY 236 (243)
T ss_pred hhhc
Confidence 8887
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=310.37 Aligned_cols=183 Identities=20% Similarity=0.266 Sum_probs=153.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
.++++|++++|. +++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.
T Consensus 3 ~l~i~~l~~~~~-~~~~~----l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ 77 (356)
T PRK11650 3 GLKLQAVRKSYD-GKTQV----IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRD 77 (356)
T ss_pred EEEEEeEEEEeC-CCCEE----EeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 589999999994 23556 999999999999999999999999999999999999 99999999998864 3467
Q ss_pred EEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
++|++|++.+|+ .+||+||..+ +. +++.++++.++ .+||||||||. |+ +.+|
T Consensus 78 ig~v~Q~~~lfp----~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P 153 (356)
T PRK11650 78 IAMVFQNYALYP----HMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREP 153 (356)
T ss_pred EEEEeCCccccC----CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999998654 4599998432 21 33556666665 68999999987 44 7899
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
++|||||||++||+. ..++++.++.|.|+|+| .+||++++|++|++++.|+++++++.|.
T Consensus 154 ~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 154 AVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 999999999999999 33556666568999999 5689999999999999999999987653
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=301.57 Aligned_cols=189 Identities=17% Similarity=0.249 Sum_probs=157.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCe---eCCC---C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT---SSGN---S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~---~i~~---~ 138 (273)
.|+++++++.|. ...+ ++|||++|+.||.+|++|||||||||||++|+|+.. ++|.|.++|+ |.+. .
T Consensus 2 ~i~i~~~~~~~~--~~~a----~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~ 75 (345)
T COG1118 2 SIRINNVKKRFG--AFGA----LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR 75 (345)
T ss_pred ceeehhhhhhcc--cccc----cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh
Confidence 467888888774 4445 999999999999999999999999999999999999 9999999999 5544 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-------------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
.++||++||+..+|+++ ||++|..+ .+.++.+.|+.+. .+||||||||. |+
T Consensus 76 ~R~VGfvFQ~YALF~Hm----tVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARA 151 (345)
T COG1118 76 DRKVGFVFQHYALFPHM----TVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARA 151 (345)
T ss_pred hcceeEEEechhhcccc----hHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHH
Confidence 47899999999986655 99999433 1334555666554 78999999987 44
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+.+|++||||||+++||.. .-++++..+.|.|+++| ++||||++|++|+|...|++.+++..|..
T Consensus 152 LA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s 231 (345)
T COG1118 152 LAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPAS 231 (345)
T ss_pred hhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCc
Confidence 6899999999999999999 33566777778888888 67899999999999999999999988876
Q ss_pred HHHhCC
Q 024032 259 RKCSKI 264 (273)
Q Consensus 259 ~~~~~~ 264 (273)
..+|+.
T Consensus 232 ~fV~~f 237 (345)
T COG1118 232 RFVARF 237 (345)
T ss_pred cceecc
Confidence 665553
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=327.36 Aligned_cols=224 Identities=14% Similarity=0.197 Sum_probs=179.2
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEE
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
....+......++.+..+.+|+.++++.++... ....+.++++|++|+|+.+++++ |+++||+|++|+.+
T Consensus 297 pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~i----l~~i~l~i~~G~~~ 372 (582)
T PRK11176 297 PLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGKEVPA----LRNINFKIPAGKTV 372 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEecCCCCCcc----ccCceEEeCCCCEE
Confidence 344555556677788889999999887553211 11124699999999997555667 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc------CCH
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG------FNY 169 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~------~~~ 169 (273)
||+||||||||||+++|+|+++ ++|+|.++|.++.+ +++.++|++|++.+ |+.|++||.. .++
T Consensus 373 aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l-----f~~Ti~~Ni~~~~~~~~~~ 447 (582)
T PRK11176 373 ALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHL-----FNDTIANNIAYARTEQYSR 447 (582)
T ss_pred EEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCcee-----ecchHHHHHhcCCCCCCCH
Confidence 9999999999999999999999 99999999999864 56789999999884 4569999833 356
Q ss_pred HHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHH
Q 024032 170 NRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVL 219 (273)
Q Consensus 170 ~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~ 219 (273)
++++++++.++ ..||||||||. |+ +++|++|||||||++||+. +.+..+.
T Consensus 448 ~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~ 527 (582)
T PRK11176 448 EQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527 (582)
T ss_pred HHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh
Confidence 77887777665 45999999986 45 8999999999999999999 2233333
Q ss_pred hcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC-hhhHHHh
Q 024032 220 RRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA-PGLRKCS 262 (273)
Q Consensus 220 ~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~-~~l~~~~ 262 (273)
+ ++|+|+| +.||+|++|++|++++.|+++++++. +...+.+
T Consensus 528 ~--~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~ 576 (582)
T PRK11176 528 K--NRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLH 576 (582)
T ss_pred C--CCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHH
Confidence 2 7898888 56899999999999999999999854 3344443
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=302.42 Aligned_cols=180 Identities=17% Similarity=0.229 Sum_probs=153.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSH 140 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~ 140 (273)
.++++|++++|.. ++++ |++|||+|++|+++||+||||||||||+|+|+|+++ ++|+|.++|.+... .++
T Consensus 4 ~i~~~~l~k~~~~-~~~~----l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~ 78 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTA----LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRR 78 (293)
T ss_pred eeeecceEEEeCC-CCEE----EeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHh
Confidence 5788999999942 4666 999999999999999999999999999999999999 99999999998753 567
Q ss_pred cEEEEeccchhhhccCCcccccccc-------cC----CHHHHHHHHHHhc---------ccCCHHHHHHH----HhcCC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSR-------GF----NYNRVHEGLEELS---------SWMSEGVHHNQ----RCLRS 196 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~-------~~----~~~~~~~~l~~~~---------~~LSgGqkq~~----r~l~~ 196 (273)
++||++|++.+ +..+|++||. +. ..+.+++.++.++ ..||+|||||. .++++
T Consensus 79 ~igy~~~~~~~----~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~ 154 (293)
T COG1131 79 RIGYVPQEPSL----YPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHD 154 (293)
T ss_pred heEEEccCCCC----CccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcC
Confidence 89999999986 4455999983 21 2456778888877 56999999987 22899
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|++|||||||+||||. +.++.++++.+.||+++ .+||+|++|++|++++.|+++++..
T Consensus 155 P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 155 PELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred CCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999 45677777634899999 5599999999999999999888643
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=309.07 Aligned_cols=182 Identities=14% Similarity=0.247 Sum_probs=154.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
.++++|++++|. ++.+ |+++||++++||+++|+|||||||||||++|+|+++ ++|+|.++|+++.. .++.
T Consensus 4 ~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ 77 (353)
T TIGR03265 4 YLSIDNIRKRFG--AFTA----LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD 77 (353)
T ss_pred EEEEEEEEEEeC--CeEE----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 589999999994 4566 999999999999999999999999999999999999 99999999998864 3567
Q ss_pred EEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
++|++|++.+|++ +||+||..+ + .+++.++++.++ .+||||||||. |+ +.+|
T Consensus 78 ig~v~Q~~~lfp~----~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P 153 (353)
T TIGR03265 78 YGIVFQSYALFPN----LTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSP 153 (353)
T ss_pred EEEEeCCcccCCC----CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999987544 599998432 2 234566677665 77999999987 34 7899
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
++|||||||++||+. +.++++.++.|.|+|+| .+||++++|++|++++.|++++++..|.
T Consensus 154 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~ 227 (353)
T TIGR03265 154 GLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA 227 (353)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 999999999999999 33556666568999998 5689999999999999999999987664
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=279.49 Aligned_cols=179 Identities=21% Similarity=0.314 Sum_probs=152.4
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i 142 (273)
+.+++|.++|.. .+ =..+++|+.||++||+||||||||||+|+|+|+.. .+|.|+++|++... ..+-+
T Consensus 2 l~L~~V~~~y~~--~~------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPV 73 (231)
T COG3840 2 LALDDVRFSYGH--LP------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPV 73 (231)
T ss_pred ccccceEEeeCc--ce------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCCh
Confidence 567888888843 22 25688999999999999999999999999999998 99999999999864 56779
Q ss_pred EEEeccchhhhccCCcccccccccC-----------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF-----------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~-----------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
+++||+.++|.++ ||.+|.++ ++++++.++.+++ .+||||||||. || +++-+
T Consensus 74 SmlFQEnNLFaHL----tV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~P 149 (231)
T COG3840 74 SMLFQENNLFAHL----TVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQP 149 (231)
T ss_pred hhhhhccccchhh----hhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCC
Confidence 9999999986654 99999432 3566777777777 88999999987 55 78889
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
||+||||+|+|||. .++..++++.+.|++|| +++|+++++++|+|.+.|+.++++....
T Consensus 150 ilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 150 ILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred eEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999999999 44677888889999999 5689999999999999999999986543
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=332.93 Aligned_cols=219 Identities=17% Similarity=0.185 Sum_probs=176.7
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc--------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCc
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL--------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVI 99 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge 99 (273)
.+..+...-..++.+..+.+|+.++++.+++.. ....+.++++|++|+|+. ++++ |+|+||+|++|+
T Consensus 427 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~-~~~i----L~~isl~i~~G~ 501 (708)
T TIGR01193 427 PLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY-GSNI----LSDISLTIKMNS 501 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCC-CCcc----eeceeEEECCCC
Confidence 445566666778889999999999987653211 111346999999999963 3556 999999999999
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc------C
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG------F 167 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~------~ 167 (273)
.+||+||||||||||+++|+|+++ ++|+|+++|.++.+ +|+.+++++|++.+ |..|++||.. .
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-----f~gTI~eNi~l~~~~~~ 576 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYI-----FSGSILENLLLGAKENV 576 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCcee-----hhHHHHHHHhccCCCCC
Confidence 999999999999999999999999 99999999998863 67889999999985 4559999842 3
Q ss_pred CHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HH-HHHHHh
Q 024032 168 NYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SS-PKYVLR 220 (273)
Q Consensus 168 ~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~-l~~l~~ 220 (273)
+++++.++++.++ ..||||||||. |+ +++|++|||||||++||+. +. .+.+.+
T Consensus 577 ~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~ 656 (708)
T TIGR01193 577 SQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN 656 (708)
T ss_pred CHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 4667777777654 56999999986 55 8999999999999999999 22 233332
Q ss_pred cCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 221 RVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 221 ~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
..++|+|+| ..||+|++|++|++++.|+++++++..
T Consensus 657 ~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~ 699 (708)
T TIGR01193 657 LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRN 699 (708)
T ss_pred hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcC
Confidence 237898888 568999999999999999999998543
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=300.61 Aligned_cols=181 Identities=14% Similarity=0.191 Sum_probs=150.6
Q ss_pred CCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----
Q 024032 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 63 ~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---- 137 (273)
+...++++|++++|. +..+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|+++|.++..
T Consensus 4 ~~~~i~i~~l~k~~~--~~~~----l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~ 77 (306)
T PRK13537 4 SVAPIDFRNVEKRYG--DKLV----VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARH 77 (306)
T ss_pred CCceEEEEeEEEEEC--CeEE----EecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHH
Confidence 345799999999994 4556 999999999999999999999999999999999999 99999999998753
Q ss_pred CCccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
.+++++|++|++.+ +..+|++||.. .+. +++.++++.++ ..||+|||||. ++
T Consensus 78 ~~~~ig~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL 153 (306)
T PRK13537 78 ARQRVGVVPQFDNL----DPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARAL 153 (306)
T ss_pred HHhcEEEEeccCcC----CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHH
Confidence 45789999999875 44569999832 222 23445566554 68999999986 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
+++|++|||||||+||||. +.++++.++ |+|||++ .+||+|++|++|++++.|+++++..
T Consensus 154 ~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~-g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999999999999 345666554 8999999 5699999999999999999998854
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=317.36 Aligned_cols=232 Identities=14% Similarity=0.166 Sum_probs=186.5
Q ss_pred ecchhhhhhhh-hhccchhhhhhhhHHHHHHHhchhhhccC------CCCceEEEEEEEEeecCCeeeeccceeeeeeEE
Q 024032 23 WRSAAKFDECV-KLKLDLPNVSTLTPRLRVLREMERLALIA------PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI 95 (273)
Q Consensus 23 ~~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~------~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i 95 (273)
++.-+.|..+. ....++.+..+++.|+.++.+.+++...+ ....++++||+|+|+....++ |+|+||++
T Consensus 286 f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~~~~~----L~~~~l~l 361 (573)
T COG4987 286 FAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKA----LKNFNLTL 361 (573)
T ss_pred HHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCccccCCccceeeeccceeecCCCccch----hhccceee
Confidence 34444455555 55577889999999999998766532111 123689999999998765567 99999999
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccc-----
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDS----- 164 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en----- 164 (273)
++||.+||+|+||||||||+++|.|.++ ++|+|.++|.++.. ++..++++.|...+ |..|+++|
T Consensus 362 ~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hl-----F~~Tlr~NL~lA~ 436 (573)
T COG4987 362 AQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHL-----FSGTLRDNLRLAN 436 (573)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHH-----HHHHHHHHHhhcC
Confidence 9999999999999999999999999999 99999999998864 45578889998885 45599998
Q ss_pred ccCCHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH---HHHHH
Q 024032 165 RGFNYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK---SSPKY 217 (273)
Q Consensus 165 ~~~~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~---~~l~~ 217 (273)
++.+++++.+++++++ ..|||||+||. |+ +++.+++||||||.|||+. +.+..
T Consensus 437 ~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~l 516 (573)
T COG4987 437 PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL 516 (573)
T ss_pred CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHH
Confidence 4567888999998887 56999999987 44 8999999999999999999 33333
Q ss_pred HH-hcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC-hhhHHHhC
Q 024032 218 VL-RRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA-PGLRKCSK 263 (273)
Q Consensus 218 l~-~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~-~~l~~~~~ 263 (273)
+. +-.|+|+|+| +.+|||+||++|+++++|++++++.+ +.+.+.|.
T Consensus 517 l~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 517 LFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred HHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHhc
Confidence 22 1228999999 56899999999999999999999864 44555443
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=312.78 Aligned_cols=188 Identities=16% Similarity=0.205 Sum_probs=159.8
Q ss_pred CCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----
Q 024032 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN----- 137 (273)
Q Consensus 63 ~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~----- 137 (273)
..+.|+|+||+++|.. ++++ |+++||+|++||.+||+|+|||||||++|+|.+++.++|+|++||+++++
T Consensus 348 ~~~~I~F~dV~f~y~~-k~~i----L~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~S 422 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYGP-KRKV----LKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLES 422 (591)
T ss_pred CCCcEEEEeeEEEeCC-CCce----ecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHH
Confidence 3567999999999964 3447 99999999999999999999999999999999999999999999999874
Q ss_pred CCccEEEEeccchhhhccCCccccccc-----ccCCHHHHHHHHHHhc--------------------ccCCHHHHHHH-
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDS-----RGFNYNRVHEGLEELS--------------------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en-----~~~~~~~~~~~l~~~~--------------------~~LSgGqkq~~- 191 (273)
+|+.||+|||+..+ |+.||..| +..+++++.++.++++ ..||||||||+
T Consensus 423 lR~~Ig~VPQd~~L-----FndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvs 497 (591)
T KOG0057|consen 423 LRQSIGVVPQDSVL-----FNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVS 497 (591)
T ss_pred hhhheeEeCCcccc-----cchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHH
Confidence 67889999999985 45588887 4457888888888776 56999999987
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH---HHHHHHHh-cCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK---SSPKYVLR-RVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~---~~l~~l~~-~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
|+ +++|+|+++|||||+||.. ++++.+.. ..++|+|+| ..+|+|+++++|++.+.|++++++....
T Consensus 498 laRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~ 577 (591)
T KOG0057|consen 498 LARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSE 577 (591)
T ss_pred HHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhh
Confidence 55 8999999999999999999 33443332 238999999 5689999999999999999999998444
Q ss_pred hHH
Q 024032 258 LRK 260 (273)
Q Consensus 258 l~~ 260 (273)
+..
T Consensus 578 ~~~ 580 (591)
T KOG0057|consen 578 LYA 580 (591)
T ss_pred HHH
Confidence 433
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=323.78 Aligned_cols=218 Identities=15% Similarity=0.156 Sum_probs=176.8
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchhhhc-------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEE
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMERLAL-------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
+..+...-..++++.++.+|+.++++.++... ....+.++++|++|+|+.+++++ |+|+||++++|+++
T Consensus 294 ~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~i----l~~i~~~i~~G~~~ 369 (574)
T PRK11160 294 LMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQPQPV----LKGLSLQIKAGEKV 369 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEEEECCCCCCcc----eecceEEECCCCEE
Confidence 44455555677888999999999988654311 11134699999999997544567 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHH
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYN 170 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~ 170 (273)
||+||||||||||+++|+|+++ ++|+|.++|.++.+ +++.+++++|++.+ |..|++||. ..+++
T Consensus 370 aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-----f~~ti~~Ni~~~~~~~~~~ 444 (574)
T PRK11160 370 ALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL-----FSATLRDNLLLAAPNASDE 444 (574)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchh-----hcccHHHHhhcCCCccCHH
Confidence 9999999999999999999999 99999999999864 56789999999885 445999984 24567
Q ss_pred HHHHHHHHhc-------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--H----HHHHHHhc
Q 024032 171 RVHEGLEELS-------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--S----SPKYVLRR 221 (273)
Q Consensus 171 ~~~~~l~~~~-------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~----~l~~l~~~ 221 (273)
++.++++.++ ..||||||||. |+ +++|++|||||||++||+. . .+..+.+
T Consensus 445 ~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~- 523 (574)
T PRK11160 445 ALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ- 523 (574)
T ss_pred HHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-
Confidence 7777777654 45999999986 44 8999999999999999999 2 2333332
Q ss_pred CCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 222 VDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 222 ~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
++|+|+| ..||+|++|++|++++.|+++++++...
T Consensus 524 -~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g 565 (574)
T PRK11160 524 -NKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQG 565 (574)
T ss_pred -CCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCc
Confidence 7898888 4589999999999999999999986543
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=288.34 Aligned_cols=178 Identities=20% Similarity=0.248 Sum_probs=145.2
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--------
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-------- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-------- 137 (273)
++++|++++|. ++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (235)
T cd03261 1 IELRGLTKSFG--GRTV----LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYR 74 (235)
T ss_pred CeEEEEEEEEC--CEEE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHH
Confidence 47899999984 4567 999999999999999999999999999999999999 99999999988743
Q ss_pred CCccEEEEeccchhhhccCCccccccccc--------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRG--------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~--------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
.++.+++++|++.++ ..+||.+|.. ... +++.++++.++ .+||||||||. |+
T Consensus 75 ~~~~i~~v~q~~~~~----~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 75 LRRRMGMLFQSGALF----DSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred HhcceEEEccCcccC----CCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 246799999987753 3458888732 121 23455566655 57999999986 33
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
+.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|++++.|+++++..
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 7899999999999999999 33555554348899888 4689999999999999999998864
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=323.58 Aligned_cols=216 Identities=18% Similarity=0.206 Sum_probs=175.3
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhh-----ccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEE
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLA-----LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITIL 102 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-----~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~a 102 (273)
.+..+......++.+..+.+|+.++++.++.. .....+.+++++++|+|+. ++++ |+|+||++++||++|
T Consensus 297 pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~-~~~i----l~~i~l~i~~Ge~ia 371 (592)
T PRK10790 297 PLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGNDDRPLQSGRIDIDNVSFAYRD-DNLV----LQNINLSVPSRGFVA 371 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCccCCCCCeEEEEEEEEEeCC-CCce----eeceeEEEcCCCEEE
Confidence 34455555667788899999999988754321 1112346999999999964 3456 999999999999999
Q ss_pred EEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc----cCCHHHH
Q 024032 103 LMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR----GFNYNRV 172 (273)
Q Consensus 103 ivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~----~~~~~~~ 172 (273)
|+|+||||||||+++|+|+++ ++|+|.++|.++.+ +++++++++|++.+ |+.|+++|. ..+++++
T Consensus 372 IvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~l-----F~~Ti~~NI~~~~~~~d~~i 446 (592)
T PRK10790 372 LVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVV-----LADTFLANVTLGRDISEEQV 446 (592)
T ss_pred EECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcc-----ccchHHHHHHhCCCCCHHHH
Confidence 999999999999999999999 99999999998864 57889999999985 455999984 3356777
Q ss_pred HHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcC
Q 024032 173 HEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRV 222 (273)
Q Consensus 173 ~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~ 222 (273)
.++++.++ ..||||||||. |+ +++|++|||||||++||+. +.++.+.+
T Consensus 447 ~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-- 524 (592)
T PRK10790 447 WQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-- 524 (592)
T ss_pred HHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--
Confidence 77777765 46999999987 55 8999999999999999999 22333333
Q ss_pred CcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 223 DFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 223 g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
++|+|+| ..||+|++|++|++++.|+++++++.
T Consensus 525 ~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 525 HTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred CCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 6888888 45899999999999999999999854
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=305.09 Aligned_cols=182 Identities=19% Similarity=0.304 Sum_probs=152.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
.++++|++++|. +.++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++.. .++.
T Consensus 2 ~L~i~~l~~~~~--~~~~----l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ 75 (353)
T PRK10851 2 SIEIANIKKSFG--RTQV----LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK 75 (353)
T ss_pred EEEEEEEEEEeC--CeEE----EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCC
Confidence 378999999984 4566 999999999999999999999999999999999999 99999999998853 3467
Q ss_pred EEEEeccchhhhccCCcccccccccC-----------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-----------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-----------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
++|++|++.+++ .+||+||..+ + .+++.++++.++ .+||||||||. |+
T Consensus 76 i~~v~Q~~~l~p----~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 76 VGFVFQHYALFR----HMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred EEEEecCcccCC----CCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 999999988644 4589888432 1 124555666665 67999999987 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+.+|++|||||||++||+. +.++++.++.|.|+|++ .+||+|++|++|++++.|++++++..|.
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~ 229 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPA 229 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 7999999999999999999 34556666558899988 5689999999999999999999987653
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=306.82 Aligned_cols=184 Identities=18% Similarity=0.289 Sum_probs=154.4
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SS 139 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~ 139 (273)
...++++|++++|. ++++ |+++||++++||+++|+|||||||||||++|+|+++ ++|+|.++|+++.. .+
T Consensus 12 ~~~L~l~~l~~~~~--~~~~----l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~ 85 (375)
T PRK09452 12 SPLVELRGISKSFD--GKEV----ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAEN 85 (375)
T ss_pred CceEEEEEEEEEEC--CeEE----EeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHH
Confidence 44689999999994 4566 999999999999999999999999999999999999 99999999998864 34
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~ 195 (273)
+.++|++|++.+|+ .+||+||..+ +. +++.++++.++ .+||||||||+ |+ +.
T Consensus 86 r~ig~vfQ~~~lfp----~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~ 161 (375)
T PRK09452 86 RHVNTVFQSYALFP----HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN 161 (375)
T ss_pred CCEEEEecCcccCC----CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 67999999998754 4599998432 21 23455666655 78999999987 43 78
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+|++|||||||++||+. ..++++.++.|.|+|+| .+||+|++|++|++++.|++++++..|.
T Consensus 162 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 162 KPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999 33556666568999998 5689999999999999999999987664
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=337.85 Aligned_cols=211 Identities=19% Similarity=0.209 Sum_probs=173.7
Q ss_pred cchhhhhhhhHHHHHHHhchhh---------hccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCC
Q 024032 37 LDLPNVSTLTPRLRVLREMERL---------ALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFS 107 (273)
Q Consensus 37 ~~~~~~~~~~~r~~~~~~~~~~---------~~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpn 107 (273)
..+..+..+..++.++.+-.+. ......+.++++||.|+|+.... + .+|+++||+|++|+.+||||||
T Consensus 312 ~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpd-v--~Il~g~sl~i~~G~~valVG~S 388 (1228)
T KOG0055|consen 312 SAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPD-V--KILKGVSLKIPSGQTVALVGPS 388 (1228)
T ss_pred HHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCc-c--hhhCCeEEEeCCCCEEEEECCC
Confidence 4556778888888888764432 11123568999999999986531 2 3499999999999999999999
Q ss_pred CChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHHHHHHHH
Q 024032 108 GSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYNRVHEGL 176 (273)
Q Consensus 108 GsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~~~~~l 176 (273)
||||||++++|.|+|. ++|+|++||.++.. +|.+||.|.|+|. +|..||+||. +.+.+++.+++
T Consensus 389 GsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePv-----lF~~tI~eNI~~G~~dat~~~i~~a~ 463 (1228)
T KOG0055|consen 389 GSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPV-----LFATTIRENIRYGKPDATREEIEEAA 463 (1228)
T ss_pred CCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechh-----hhcccHHHHHhcCCCcccHHHHHHHH
Confidence 9999999999999999 99999999999874 6789999999997 5667999993 34577788887
Q ss_pred HHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEE
Q 024032 177 EELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAM 226 (273)
Q Consensus 177 ~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~ti 226 (273)
+.++ .+||||||||. |+ +++|+|||||||||+||+. +.+.+..+ |+|.
T Consensus 464 k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTT 541 (1228)
T KOG0055|consen 464 KAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTT 541 (1228)
T ss_pred HHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeE
Confidence 7665 57999999987 44 8999999999999999999 33555544 7777
Q ss_pred EEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 227 VVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 227 iiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
|+| +.||+|++|++|+|++.|+|+|++..+.
T Consensus 542 ivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G 579 (1228)
T KOG0055|consen 542 IVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGG 579 (1228)
T ss_pred EEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhccc
Confidence 776 5699999999999999999999987653
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=283.94 Aligned_cols=194 Identities=20% Similarity=0.275 Sum_probs=165.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
+++++|++++| +++.+ |+++|++|++|.+++|||||||||||||.++++|++ ++|+|+++|.++.. +.
T Consensus 1 MI~i~nv~K~y--~~~~v----l~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LA 74 (252)
T COG4604 1 MITIENVSKSY--GTKVV----LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74 (252)
T ss_pred CeeehhhhHhh--CCEEe----eccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHH
Confidence 47899999988 56777 999999999999999999999999999999999999 99999999999874 45
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-------------CHHHHHHHHHHhc---------ccCCHHHHHHHHh----
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-------------NYNRVHEGLEELS---------SWMSEGVHHNQRC---- 193 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-------------~~~~~~~~l~~~~---------~~LSgGqkq~~r~---- 193 (273)
++++..-|+... ...+||+|-.+| ++..+.++++.+. .+||||||||.-+
T Consensus 75 k~lSILkQ~N~i----~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVl 150 (252)
T COG4604 75 KKLSILKQENHI----NSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVL 150 (252)
T ss_pred HHHHHHHhhchh----hheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheee
Confidence 666666666554 455688885322 3445777777766 7899999988622
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
.++.+.++||||.++||.. +.+++++++.|+||++| .++|+|+.|++|+++.+|+++++++.+.++
T Consensus 151 aQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~L~ 230 (252)
T COG4604 151 AQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILS 230 (252)
T ss_pred eccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHHHH
Confidence 6899999999999999999 45678888899999999 457999999999999999999999999999
Q ss_pred HHhCCceEEE
Q 024032 260 KCSKISFCIL 269 (273)
Q Consensus 260 ~~~~~~~~~~ 269 (273)
+.|+.++++.
T Consensus 231 eiydm~i~v~ 240 (252)
T COG4604 231 EIYDMDIPVE 240 (252)
T ss_pred HHhcCCceeE
Confidence 9999987765
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=281.89 Aligned_cols=193 Identities=15% Similarity=0.186 Sum_probs=158.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
+|+.+|++++. .++.+ |+++||++++||++||+||||||||||||.|+|.+. ++|++.++|.++.. +.
T Consensus 1 mi~a~nls~~~--~Gr~l----l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA 74 (259)
T COG4559 1 MIRAENLSYSL--AGRRL----LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELA 74 (259)
T ss_pred CeeeeeeEEEe--eccee----ccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHH
Confidence 46788888766 56777 999999999999999999999999999999999998 99999999999864 34
Q ss_pred ccEEEEeccchhhhccCCcccccccccC---------C--H--HHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF---------N--Y--NRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~---------~--~--~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
++.+..+|+..+ -|.+||+|...+ . + +.+.+++..+. ..||||||||+ |+
T Consensus 75 ~~raVlpQ~s~l----aFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvL 150 (259)
T COG4559 75 RHRAVLPQNSSL----AFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVL 150 (259)
T ss_pred HHhhhcccCccc----ccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHH
Confidence 566777888775 788899986211 1 1 12455666554 67999999986 33
Q ss_pred --c----CCCCEEEEcCcCCCCCHHHH------HHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 194 --L----RSDDCALMKNDAEIDDLKSS------PKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 194 --l----~~p~iLlLDEPts~LD~~~~------l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
+ -++++|+||||||+||+.++ .+.++++ |..|+.| .+||||++|.+|++++.|+|++++
T Consensus 151 aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 151 AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred HHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence 2 34569999999999999943 4567766 7888888 678999999999999999999999
Q ss_pred cChhhHHHhCCceEEE
Q 024032 254 SAPGLRKCSKISFCIL 269 (273)
Q Consensus 254 ~~~~l~~~~~~~~~~~ 269 (273)
+.+.++.+||.++.+.
T Consensus 230 t~Etl~~vyg~~~~V~ 245 (259)
T COG4559 230 TDETLERVYGADIRVG 245 (259)
T ss_pred CHHHHHHHhCCceeee
Confidence 9999999999987664
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=286.06 Aligned_cols=182 Identities=20% Similarity=0.323 Sum_probs=147.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
.++++|++++|+ ++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.
T Consensus 2 ~l~~~~l~~~~~--~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (239)
T cd03296 2 SIEVRNVSKRFG--DFVA----LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75 (239)
T ss_pred EEEEEeEEEEEC--CEEe----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccc
Confidence 378999999994 4567 999999999999999999999999999999999999 99999999998753 2457
Q ss_pred EEEEeccchhhhccCCcccccccccC-----------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-----------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-----------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
++|++|++.+ +...|+.+|..+ .. +.+.++++.++ .+|||||+||. |+
T Consensus 76 i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 76 VGFVFQHYAL----FRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred eEEEecCCcc----cCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 9999998775 334588887321 11 23445555554 67999999986 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+.+|++|||||||++||+. +.+++++++.|+|||++ ..||++++|++|+++..|+++++++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 229 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPA 229 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcCCC
Confidence 7899999999999999999 33555655447899988 4689999999999999999999876544
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=305.30 Aligned_cols=182 Identities=17% Similarity=0.280 Sum_probs=152.9
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Cc--cEEEECCeeCCC---C
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS--GLVLFAQTSSGN---S 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~--G~I~i~g~~i~~---~ 138 (273)
+.+++++++++|. +..+ |+++||+|++||+++|+|||||||||||++|+|+++ ++ |+|.++|+++.. .
T Consensus 4 ~~l~~~~l~~~~~--~~~~----l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 4 GGIRIDHLRVAYG--ANTV----LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred eEEEEEEEEEEEC--CeEE----EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH
Confidence 3588999999994 4556 999999999999999999999999999999999999 99 999999998854 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.+++++|++.+|+ .+||++|..+ + .+++.++++.++ .+||||||||. |+ +
T Consensus 78 ~r~ig~vfQ~~~l~p----~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~ 153 (362)
T TIGR03258 78 KRGLALLFQNYALFP----HLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIA 153 (362)
T ss_pred HCCEEEEECCcccCC----CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHh
Confidence 467999999988654 4599998432 2 234556677665 78999999987 44 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcC-CcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRV-DFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~-g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
.+|++|||||||++||+. ..++++.++. |.|+|++ .+||+|++|++|++++.|++++++..|
T Consensus 154 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 154 IEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 899999999999999999 3355666654 7899888 568999999999999999999998765
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=287.98 Aligned_cols=187 Identities=21% Similarity=0.254 Sum_probs=148.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
+++++|++++|. +++++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~-~~~~i----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T TIGR02315 1 MLEVENLSKVYP-NGKQA----LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLR 75 (243)
T ss_pred CeEEEeeeeecC-CCcce----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHH
Confidence 368999999985 24556 999999999999999999999999999999999999 99999999998753
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccC-------------------CHHHHHHHHHHhc---------ccCCHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------------------NYNRVHEGLEELS---------SWMSEGVH 188 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------------------~~~~~~~~l~~~~---------~~LSgGqk 188 (273)
.++.+++++|++.++ ..+|+.+|..+ ..+++.++++.++ .+||||||
T Consensus 76 ~~~~~i~~v~q~~~~~----~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 151 (243)
T TIGR02315 76 KLRRRIGMIFQHYNLI----ERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQ 151 (243)
T ss_pred HHHhheEEEcCCCccc----ccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHH
Confidence 246799999987753 34588777421 0123455566655 67999999
Q ss_pred HHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChh
Q 024032 189 HNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATK 250 (273)
Q Consensus 189 q~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~ 250 (273)
||. |+ +.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|++++.|+++
T Consensus 152 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (243)
T TIGR02315 152 QRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231 (243)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHH
Confidence 987 33 7899999999999999999 34555554447899888 568999999999999999998
Q ss_pred hhccChhhHHHh
Q 024032 251 RLFSAPGLRKCS 262 (273)
Q Consensus 251 ~l~~~~~l~~~~ 262 (273)
++ ....+.+.|
T Consensus 232 ~~-~~~~~~~~~ 242 (243)
T TIGR02315 232 EL-DDEVLRHIY 242 (243)
T ss_pred Hh-ChHHHHHhh
Confidence 87 344455554
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=301.77 Aligned_cols=182 Identities=22% Similarity=0.273 Sum_probs=150.0
Q ss_pred ceEEEEEEEEeecC--CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 66 LNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g--~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
+++++|++++|+.+ ++++ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|.++..
T Consensus 1 mi~i~~l~~~y~~~~~~~~i----l~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~ 76 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHA----LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKE 76 (343)
T ss_pred CEEEEeEEEEeCCCCCceEE----EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHH
Confidence 37899999999632 3456 999999999999999999999999999999999999 99999999998753
Q ss_pred ---CCccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ--- 191 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~--- 191 (273)
.++.++|++|++.+ +..+|+.||.. ... +++.+.++.++ .+||||||||.
T Consensus 77 ~~~~~~~ig~v~q~~~l----~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lA 152 (343)
T PRK11153 77 LRKARRQIGMIFQHFNL----LSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIA 152 (343)
T ss_pred HHHHhcCEEEEeCCCcc----CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 24679999999875 34468888832 222 23455666655 67999999987
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|+ +++|++|||||||++||+. +.++++.++.|+|||++ .+||++++|++|++++.|++++++..
T Consensus 153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 33 7899999999999999999 34566655458899998 56899999999999999999998755
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=295.46 Aligned_cols=191 Identities=14% Similarity=0.127 Sum_probs=151.8
Q ss_pred eEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 67 NELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
++++|++++|+.+. .++ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~----L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRA----LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEECCCCcccccc----eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 78999999996421 345 999999999999999999999999999999999999 99999999998741
Q ss_pred ----CCccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc----------ccCCHHHHHHH-
Q 024032 138 ----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS----------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 ----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~----------~~LSgGqkq~~- 191 (273)
.++.++|++|++... ++..||++|.. .+. +.+.++++.++ ..||||||||.
T Consensus 79 ~~~~~~~~ig~v~q~~~~~---l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQ---LFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred hHHHHHhhEEEEeeCchhh---hhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHH
Confidence 345799999987321 33458888842 222 23455556555 67999999986
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|+ +.+|++|||||||++||+. +.++++.++.|.|||++ .+||||++|++|++++.|+++++++
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 33 7899999999999999999 33556655558999998 5689999999999999999999887
Q ss_pred ChhhHHHhCC
Q 024032 255 APGLRKCSKI 264 (273)
Q Consensus 255 ~~~l~~~~~~ 264 (273)
.+.+...++.
T Consensus 236 ~~~~~~~~~~ 245 (290)
T PRK13634 236 DPDELEAIGL 245 (290)
T ss_pred CHHHHHHCCC
Confidence 6655444333
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=283.54 Aligned_cols=185 Identities=15% Similarity=0.158 Sum_probs=149.6
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------CC
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------SS 139 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~~ 139 (273)
++++|++++|+ ++.+ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .+
T Consensus 1 l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (232)
T cd03218 1 LRAENLSKRYG--KRKV----VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74 (232)
T ss_pred CeEEEEEEEeC--CEEe----eccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHh
Confidence 47899999984 4566 999999999999999999999999999999999999 99999999998743 23
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~ 195 (273)
+.+++++|++.+ +..+|+++|..+ . .+.+.+.++.++ ..||||||||. ++ +.
T Consensus 75 ~~i~~~~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 75 LGIGYLPQEASI----FRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred ccEEEecCCccc----cccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 468999998765 344588887321 1 123445566554 67999999986 33 78
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHHH
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRKC 261 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~~ 261 (273)
+|++|||||||+|||+. +.++++.++ +.|||++ .+||++++|++|+++..|+++++...+.+++.
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 229 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR-GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKV 229 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhcCHHHHHH
Confidence 99999999999999999 345566554 8899888 56899999999999999999998876666666
Q ss_pred h
Q 024032 262 S 262 (273)
Q Consensus 262 ~ 262 (273)
|
T Consensus 230 ~ 230 (232)
T cd03218 230 Y 230 (232)
T ss_pred h
Confidence 5
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=285.34 Aligned_cols=184 Identities=21% Similarity=0.230 Sum_probs=146.3
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--------
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-------- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-------- 137 (273)
++++|++++|.. ++++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~-~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (241)
T cd03256 1 IEVENLSKTYPN-GKKA----LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75 (241)
T ss_pred CEEeeEEEecCC-ccEE----EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHH
Confidence 468999999853 2556 999999999999999999999999999999999998 99999999998753
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC----------------C---HHHHHHHHHHhc---------ccCCHHHHH
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF----------------N---YNRVHEGLEELS---------SWMSEGVHH 189 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~----------------~---~~~~~~~l~~~~---------~~LSgGqkq 189 (273)
.++.+++++|++.+ ++.+|+.+|..+ . .+++.++++.++ .+|||||||
T Consensus 76 ~~~~i~~~~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 151 (241)
T cd03256 76 LRRQIGMIFQQFNL----IERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQ 151 (241)
T ss_pred HHhccEEEcccCcc----cccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHH
Confidence 24568999998775 334588877321 1 123445566655 679999999
Q ss_pred HH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhh
Q 024032 190 NQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKR 251 (273)
Q Consensus 190 ~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~ 251 (273)
|. |+ +.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|++++.|++++
T Consensus 152 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (241)
T cd03256 152 RVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAE 231 (241)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHH
Confidence 86 33 7899999999999999999 33555554448899988 4789999999999999999988
Q ss_pred hccChhhHH
Q 024032 252 LFSAPGLRK 260 (273)
Q Consensus 252 l~~~~~l~~ 260 (273)
+. .+.+.+
T Consensus 232 ~~-~~~~~~ 239 (241)
T cd03256 232 LT-DEVLDE 239 (241)
T ss_pred hh-HHHHHh
Confidence 64 333443
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=295.59 Aligned_cols=192 Identities=14% Similarity=0.149 Sum_probs=151.3
Q ss_pred ceEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----
Q 024032 66 LNELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---- 137 (273)
+++++|++++|..+. +.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~----l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 76 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRA----LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQ 76 (288)
T ss_pred CEEEEEEEEEeCCCCcccccc----eeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECcccccc
Confidence 478999999996332 235 999999999999999999999999999999999999 99999999998741
Q ss_pred -----CCccEEEEeccchhhhccCCcccccccccC-------CHH----HHHHHHHHhc----------ccCCHHHHHHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NYN----RVHEGLEELS----------SWMSEGVHHNQ 191 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~~----~~~~~l~~~~----------~~LSgGqkq~~ 191 (273)
.++.+++++|++.. .++..||.+|..+ +.+ ++.++++.++ ..||||||||.
T Consensus 77 ~~~~~~~~~ig~v~q~~~~---~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrv 153 (288)
T PRK13643 77 KEIKPVRKKVGVVFQFPES---QLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRV 153 (288)
T ss_pred ccHHHHHhhEEEEecCcch---hcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHH
Confidence 35679999998732 1344588887432 222 2445555444 66999999987
Q ss_pred ---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 192 ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 192 ---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
++ +.+|++|||||||++||+. +.+++++++ |.|||++ .+||+|++|++|++++.|++++++
T Consensus 154 aiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 232 (288)
T PRK13643 154 AIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232 (288)
T ss_pred HHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 33 7899999999999999999 335556554 8999999 468999999999999999999998
Q ss_pred cChhhHHHhCCc
Q 024032 254 SAPGLRKCSKIS 265 (273)
Q Consensus 254 ~~~~l~~~~~~~ 265 (273)
....+...++..
T Consensus 233 ~~~~~~~~~~~~ 244 (288)
T PRK13643 233 QEVDFLKAHELG 244 (288)
T ss_pred cCHHHHHHcCCC
Confidence 765544444443
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=291.28 Aligned_cols=187 Identities=18% Similarity=0.276 Sum_probs=152.2
Q ss_pred ceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----C
Q 024032 66 LNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~ 138 (273)
.++++|++++|..+ ..++ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.++.. .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYT----LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDI 79 (279)
T ss_pred eEEEEeEEEEcCCCCcCee----eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH
Confidence 68999999999642 2346 999999999999999999999999999999999999 99999999998853 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.+++++|++.. .++..||.+|..+ +. +.+.++++.++ .+|||||+||. |+ +
T Consensus 80 ~~~i~~v~q~~~~---~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~ 156 (279)
T PRK13650 80 RHKIGMVFQNPDN---QFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVA 156 (279)
T ss_pred HhhceEEEcChHH---hcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 4679999998742 1445688888432 22 23556666655 78999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
.+|++|||||||+|||+. +.++++.++.|+|||++ ..||++++|++|+++..|++++++......
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~ 234 (279)
T PRK13650 157 MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGNDL 234 (279)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcChHHH
Confidence 999999999999999999 33555655458999999 458999999999999999999988765433
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=292.92 Aligned_cols=185 Identities=14% Similarity=0.192 Sum_probs=149.6
Q ss_pred ceEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----
Q 024032 66 LNELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---- 137 (273)
.+++++++++|+.+. +++ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~----l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 77 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKA----LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVK 77 (287)
T ss_pred EEEEEEEEEECCCCCccccce----eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCcc
Confidence 378999999996421 345 999999999999999999999999999999999999 99999999998753
Q ss_pred ---CCccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc-----------ccCCHHHHHHH-
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS-----------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~-----------~~LSgGqkq~~- 191 (273)
.+++++|++|++.. .++..||++|..+ +. +++.++++.++ ..||||||||.
T Consensus 78 ~~~~~~~ig~v~q~~~~---~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~ 154 (287)
T PRK13637 78 LSDIRKKVGLVFQYPEY---QLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVA 154 (287)
T ss_pred HHHHhhceEEEecCchh---ccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHH
Confidence 24679999998742 1345688888422 22 23455666544 66999999986
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|+ +.+|++|||||||+|||+. +.++++.++.|.|||++ .+||+|++|++|++++.|+++++++
T Consensus 155 iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 155 IAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 33 7899999999999999999 34556655458999998 5689999999999999999999876
Q ss_pred Chh
Q 024032 255 APG 257 (273)
Q Consensus 255 ~~~ 257 (273)
...
T Consensus 235 ~~~ 237 (287)
T PRK13637 235 EVE 237 (287)
T ss_pred CHH
Confidence 543
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=302.98 Aligned_cols=181 Identities=20% Similarity=0.274 Sum_probs=151.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
.++++|++++|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.
T Consensus 3 ~l~i~~l~~~~~--~~~v----l~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~ 76 (369)
T PRK11000 3 SVTLRNVTKAYG--DVVI----SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERG 76 (369)
T ss_pred EEEEEEEEEEeC--CeEE----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCC
Confidence 588999999994 4567 999999999999999999999999999999999999 99999999998754 3467
Q ss_pred EEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
++|++|++.++ ..+||+||..+ + .+++.++++.++ .+||||||||. |+ +.+|
T Consensus 77 i~~v~Q~~~l~----~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P 152 (369)
T PRK11000 77 VGMVFQSYALY----PHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (369)
T ss_pred EEEEeCCcccC----CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999998764 34599998432 2 134556666665 67999999987 33 7899
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
++|||||||++||+. +.++++.++.|.|+|++ .+||++++|++|+++..|++++++..|
T Consensus 153 ~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p 225 (369)
T PRK11000 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (369)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999 33556655558899988 568999999999999999999998654
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=303.74 Aligned_cols=184 Identities=19% Similarity=0.255 Sum_probs=153.7
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SS 139 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~ 139 (273)
...+++++++++|. +.++ |+++||+|++||+++|+|||||||||||++|+|+++ ++|+|.++|+++.. .+
T Consensus 17 ~~~l~l~~v~~~~~--~~~~----l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~ 90 (377)
T PRK11607 17 TPLLEIRNLTKSFD--GQHA----VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ 90 (377)
T ss_pred CceEEEEeEEEEEC--CEEE----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHH
Confidence 34699999999994 4566 999999999999999999999999999999999999 99999999998754 45
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~ 195 (273)
+.++|++|++.+|+ .+||+||..+ +. +++.+.++.++ .+||||||||. |+ +.
T Consensus 91 r~ig~vfQ~~~lfp----~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~ 166 (377)
T PRK11607 91 RPINMMFQSYALFP----HMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK 166 (377)
T ss_pred CCEEEEeCCCccCC----CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 68999999998754 4599999432 22 23455666655 67999999987 44 78
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+|++|||||||++||+. +.++++.++.|.|+|++ .+||++++|++|++++.|++++++..|.
T Consensus 167 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~ 242 (377)
T PRK11607 167 RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 242 (377)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCc
Confidence 99999999999999999 23455655568999998 5689999999999999999999987654
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=298.44 Aligned_cols=180 Identities=16% Similarity=0.174 Sum_probs=149.5
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----C
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----S 138 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~ 138 (273)
...++++|++++|+ ++.+ |+++||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|.++.. .
T Consensus 39 ~~~i~i~nl~k~y~--~~~~----l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~ 112 (340)
T PRK13536 39 TVAIDLAGVSKSYG--DKAV----VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLA 112 (340)
T ss_pred ceeEEEEEEEEEEC--CEEE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHH
Confidence 34699999999994 5566 999999999999999999999999999999999999 99999999998753 4
Q ss_pred CccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.++|++|++.+ +..+|+.||.. .+. +.+.++++.++ ..||||||||. ++ +
T Consensus 113 ~~~ig~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~ 188 (340)
T PRK13536 113 RARIGVVPQFDNL----DLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALI 188 (340)
T ss_pred hccEEEEeCCccC----CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHh
Confidence 5679999999775 44568888732 121 23445566555 67999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
++|++|||||||+||||. +.++++.++ |.|||++ .+||+|++|++|+++..|+++++..
T Consensus 189 ~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~-g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 189 NDPQLLILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 899999999999999999 345666554 8999999 5699999999999999999998854
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=297.96 Aligned_cols=191 Identities=10% Similarity=0.081 Sum_probs=151.3
Q ss_pred ceEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC-----
Q 024032 66 LNELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG----- 136 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~----- 136 (273)
.++++|++++|..+. ..+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|+++|.++.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~----l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~ 77 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKA----LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKT 77 (305)
T ss_pred EEEEEEEEEEECCCCCccccc----eeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccc
Confidence 378999999996432 235 999999999999999999999999999999999999 9999999987541
Q ss_pred ------------------------CCCccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc-
Q 024032 137 ------------------------NSSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS- 180 (273)
Q Consensus 137 ------------------------~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~- 180 (273)
..++.++|++|++.. .++..||+||..+ +. +++.++++.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~---~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL 154 (305)
T PRK13651 78 KEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEY---QLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGL 154 (305)
T ss_pred ccccccccccccccccccccchHHHHHhceEEEeeCccc---ccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 135679999998632 1345688887432 22 23455666655
Q ss_pred ---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCC
Q 024032 181 ---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAE 233 (273)
Q Consensus 181 ---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad 233 (273)
..||||||||. ++ +.+|++|||||||++||+. +.++++.++ |.|||++ .+||
T Consensus 155 ~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivtHd~~~~~~~ad 233 (305)
T PRK13651 155 DESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEWTK 233 (305)
T ss_pred ChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeeCHHHHHHhCC
Confidence 66999999987 33 7899999999999999999 345556544 8999998 5689
Q ss_pred EEEEEeCCeEeeecChhhhccChhhHHHhCC
Q 024032 234 IYKALKAGDSKPLDATKRLFSAPGLRKCSKI 264 (273)
Q Consensus 234 ~i~vl~~G~i~~~g~~~~l~~~~~l~~~~~~ 264 (273)
||++|++|++++.|++++++..+.+...++.
T Consensus 234 rv~vl~~G~i~~~g~~~~~~~~~~~~~~~~~ 264 (305)
T PRK13651 234 RTIFFKDGKIIKDGDTYDILSDNKFLIENNM 264 (305)
T ss_pred EEEEEECCEEEEECCHHHHhcCHHHHHHCCC
Confidence 9999999999999999999877654444443
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=325.17 Aligned_cols=218 Identities=15% Similarity=0.170 Sum_probs=177.6
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc-------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcE
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVIT 100 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~ 100 (273)
.+..+...-..++.+..+.+|+.++++.+++.. ....+.++++|++|+|+.+++++ |+++||++++|+.
T Consensus 410 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~i----l~~i~l~i~~G~~ 485 (694)
T TIGR01846 410 PVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSPEV----LSNLNLDIKPGEF 485 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEcCCCCccc----cccceEEECCCCE
Confidence 345556666778899999999999987654311 11134699999999997655567 9999999999999
Q ss_pred EEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc-----CCH
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-----FNY 169 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-----~~~ 169 (273)
+||+|+||||||||+|+|+|+++ ++|+|.++|.++.+ +|+.+++++|++.+ |..|++||.. .+.
T Consensus 486 vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~l-----f~~ti~eNi~~~~~~~~~ 560 (694)
T TIGR01846 486 IGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVL-----FSRSIRDNIALCNPGAPF 560 (694)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCee-----hhhhHHHHHhcCCCCCCH
Confidence 99999999999999999999999 99999999999864 56789999999884 4559999842 356
Q ss_pred HHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHH
Q 024032 170 NRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVL 219 (273)
Q Consensus 170 ~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~ 219 (273)
+++.++++.++ ..||||||||. |+ +++|++|||||||++||+. +.++++.
T Consensus 561 ~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 640 (694)
T TIGR01846 561 EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC 640 (694)
T ss_pred HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh
Confidence 67777666554 57999999987 44 8999999999999999999 2234443
Q ss_pred hcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 220 RRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 220 ~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+ ++|+|++ ..||+|++|++|++++.|+++++++..
T Consensus 641 ~--~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~ 682 (694)
T TIGR01846 641 R--GRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ 682 (694)
T ss_pred C--CCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcC
Confidence 2 7898888 458999999999999999999998654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=292.68 Aligned_cols=191 Identities=18% Similarity=0.155 Sum_probs=151.4
Q ss_pred eEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 67 NELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
++++|++++|..+. ..+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQA----IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEEECCCCccccCc----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 78999999996322 245 999999999999999999999999999999999999 99999999998742
Q ss_pred ----CCccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc----------ccCCHHHHHHH-
Q 024032 138 ----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS----------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 ----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~----------~~LSgGqkq~~- 191 (273)
.++.+++++|++.. .++..|+.+|..+ +. +.+.++++.++ .+|||||+||.
T Consensus 79 ~~~~~~~~ig~v~q~~~~---~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPES---QLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred hHHHHHhheEEEecChHh---ccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 35679999998632 1334488887422 22 23445555554 67999999986
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|+ +.+|++|||||||+|||+. +.++++.++.|.|||++ .+||++++|++|++++.|+++++++
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 33 7899999999999999999 33555654448999999 4689999999999999999999887
Q ss_pred ChhhHHHhCC
Q 024032 255 APGLRKCSKI 264 (273)
Q Consensus 255 ~~~l~~~~~~ 264 (273)
.......++.
T Consensus 236 ~~~~~~~~~~ 245 (286)
T PRK13646 236 DKKKLADWHI 245 (286)
T ss_pred CHHHHHHcCC
Confidence 6554444444
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=291.10 Aligned_cols=193 Identities=13% Similarity=0.187 Sum_probs=154.8
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC-------
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG------- 136 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~------- 136 (273)
.+++++|++++|.. ++.+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.++.
T Consensus 4 ~~l~~~~l~~~~~~-~~~~----l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~ 78 (283)
T PRK13636 4 YILKVEELNYNYSD-GTHA----LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLM 78 (283)
T ss_pred ceEEEEeEEEEeCC-CCee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHH
Confidence 37899999999952 3456 999999999999999999999999999999999999 9999999999873
Q ss_pred CCCccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 137 ~~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
..++.++|++|++... ++..|+++|.. .+. +.+.++++.++ ..|||||+||. |+
T Consensus 79 ~~~~~ig~v~q~~~~~---~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 79 KLRESVGMVFQDPDNQ---LFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred HHHhhEEEEecCcchh---hccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 1346799999987421 34568888742 222 23455556555 77999999986 33
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+.+|++|||||||+|||+. +.++++.++.|.|||++ .+||++++|++|++++.|+++++++....
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~ 235 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEM 235 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHH
Confidence 7999999999999999999 33556655458899998 46899999999999999999998876555
Q ss_pred HHHhCCc
Q 024032 259 RKCSKIS 265 (273)
Q Consensus 259 ~~~~~~~ 265 (273)
...++.+
T Consensus 236 ~~~~~~~ 242 (283)
T PRK13636 236 LRKVNLR 242 (283)
T ss_pred HHHcCCC
Confidence 4444443
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=283.19 Aligned_cols=179 Identities=18% Similarity=0.207 Sum_probs=145.1
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC------C
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS------S 139 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~------~ 139 (273)
++++|++++|. ++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++... +
T Consensus 1 l~~~~l~~~~~--~~~~----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (236)
T cd03219 1 LEVRGLTKRFG--GLVA----LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIAR 74 (236)
T ss_pred CeeeeeEEEEC--CEEE----ecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHh
Confidence 46899999984 4566 999999999999999999999999999999999999 999999999987531 3
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-----------------C----HHHHHHHHHHhc---------ccCCHHHHH
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-----------------N----YNRVHEGLEELS---------SWMSEGVHH 189 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-----------------~----~~~~~~~l~~~~---------~~LSgGqkq 189 (273)
..++|++|++.+ +..+|++||..+ . .+.+.++++.++ .+|||||+|
T Consensus 75 ~~i~~v~q~~~l----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 75 LGIGRTFQIPRL----FPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQR 150 (236)
T ss_pred cCEEEEeccccc----ccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHH
Confidence 468999999875 344588887311 0 123455566655 679999999
Q ss_pred HH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhh
Q 024032 190 NQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKR 251 (273)
Q Consensus 190 ~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~ 251 (273)
|. |+ +.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+++..|++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER-GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDE 229 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHH
Confidence 86 33 7899999999999999999 345555544 8899888 5689999999999999999998
Q ss_pred hccCh
Q 024032 252 LFSAP 256 (273)
Q Consensus 252 l~~~~ 256 (273)
++.++
T Consensus 230 ~~~~~ 234 (236)
T cd03219 230 VRNNP 234 (236)
T ss_pred hccCC
Confidence 86543
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=281.24 Aligned_cols=169 Identities=21% Similarity=0.272 Sum_probs=137.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
+++++|++++|+.+.+++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~~~~~~i----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 76 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPA----LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIP 76 (216)
T ss_pred CeEEEEEEEEecCCCeeE----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHH
Confidence 378999999996433457 999999999999999999999999999999999999 99999999998743
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
.++.++|++|++.+ +..+|+.||..+ . .+++.++++.++ .+||||||||. |+
T Consensus 77 ~~~~~i~~~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 152 (216)
T TIGR00960 77 FLRRHIGMVFQDHRL----LSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARA 152 (216)
T ss_pred HHHHhceEEecCccc----cccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 24579999999775 344588887421 1 234556666665 67999999986 33
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
+.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|++
T Consensus 153 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 153 IVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRR-GTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 7899999999999999999 335555544 8899888 46899999999975
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=346.94 Aligned_cols=215 Identities=17% Similarity=0.211 Sum_probs=175.9
Q ss_pred hhhccchhhhhhhhHHHHHHHhchhhhc--------c---CCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEE
Q 024032 33 VKLKLDLPNVSTLTPRLRVLREMERLAL--------I---APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 33 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~--------~---~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
...-..++.+..+.+|+.++.+.+++.. . +..+.|+++||+|+|+.+..++ |+|+||+|++||.+
T Consensus 1190 ~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~v----L~~isl~I~~Gekv 1265 (1495)
T PLN03232 1190 LRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPV----LHGLSFFVSPSEKV 1265 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcc----cccceEEEcCCCEE
Confidence 3334566778889999999987654311 0 1134699999999997554567 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc----CCHHH
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG----FNYNR 171 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~----~~~~~ 171 (273)
|||||||||||||+++|.|+++ ++|+|.+||.++.+ +|+++++++|++.+ |..|+++|.. .++++
T Consensus 1266 aIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~L-----F~gTIr~NL~~~~~~sdee 1340 (1495)
T PLN03232 1266 GVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVL-----FSGTVRFNIDPFSEHNDAD 1340 (1495)
T ss_pred EEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCee-----eCccHHHHcCCCCCCCHHH
Confidence 9999999999999999999999 99999999999864 67899999999985 4559999943 46778
Q ss_pred HHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHH-HHhc-CC
Q 024032 172 VHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKY-VLRR-VD 223 (273)
Q Consensus 172 ~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~-l~~~-~g 223 (273)
+.++++.++ .+||||||||. |+ +++|+|||||||||+||+. ..+.+ +.+. .+
T Consensus 1341 i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~ 1420 (1495)
T PLN03232 1341 LWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKS 1420 (1495)
T ss_pred HHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC
Confidence 888888765 47999999986 55 8999999999999999999 23322 2221 27
Q ss_pred cEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 224 FAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 224 ~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+|+|+| ..||+|+||++|+|++.|+|+++++++
T Consensus 1421 ~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~ 1460 (1495)
T PLN03232 1421 CTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRD 1460 (1495)
T ss_pred CEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 899998 458999999999999999999999764
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=280.52 Aligned_cols=176 Identities=14% Similarity=0.195 Sum_probs=143.0
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCcc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHT 141 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~ 141 (273)
++++|++++|. ++++ |+++||++++||++||+||||||||||+++|+|+++ ++|+|.++|.++.. .++.
T Consensus 1 i~~~~~~~~~~--~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (220)
T cd03265 1 IEVENLVKKYG--DFEA----VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR 74 (220)
T ss_pred CEEEEEEEEEC--CEEe----eeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhc
Confidence 57899999984 4567 999999999999999999999999999999999998 99999999987642 3467
Q ss_pred EEEEeccchhhhccCCccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
++|++|++.++ ..+|+++|.. .. .+.+.++++.++ .+||||||||. ++ +.+|
T Consensus 75 i~~~~q~~~~~----~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p 150 (220)
T cd03265 75 IGIVFQDLSVD----DELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRP 150 (220)
T ss_pred EEEecCCcccc----ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999998653 3458887732 22 224556666665 67999999986 33 7899
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|+++..++++++
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 151 EVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999 33555555447899888 46899999999999998887664
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=278.46 Aligned_cols=171 Identities=20% Similarity=0.268 Sum_probs=138.5
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i 142 (273)
++++|++++|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.+
T Consensus 1 l~~~~l~~~~~--~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i 74 (213)
T cd03259 1 LELKGLSKTYG--SVRA----LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNI 74 (213)
T ss_pred CeeeeeEEEeC--Ceee----ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccE
Confidence 46899999984 4567 999999999999999999999999999999999999 99999999998753 34579
Q ss_pred EEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
++++|++.. +..+|+++|..+ . .+++.++++.++ .+||||||||. |+ +.+|+
T Consensus 75 ~~v~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 150 (213)
T cd03259 75 GMVFQDYAL----FPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPS 150 (213)
T ss_pred EEEcCchhh----ccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999998775 344588887421 1 123455666655 57999999987 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
+|||||||++||+. +.++++.++.|.|||++ .+||++++|++|++++.|
T Consensus 151 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 151 LLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999 33455554348899988 458999999999998654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=294.39 Aligned_cols=193 Identities=12% Similarity=0.126 Sum_probs=152.7
Q ss_pred CCceEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--
Q 024032 64 DGLNELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-- 137 (273)
...++++|++++|..+. .++ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|+++|.++..
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~----L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~ 94 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVA----LNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKK 94 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccc----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccc
Confidence 35799999999996431 245 999999999999999999999999999999999999 99999999987632
Q ss_pred -------------------CCccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc-------
Q 024032 138 -------------------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS------- 180 (273)
Q Consensus 138 -------------------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~------- 180 (273)
.++.+++++|++.. .++..|+++|..+ +. +.+.+.++.++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~---~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 171 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEY---QLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLE 171 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchh---ccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhc
Confidence 34679999998742 1344588887422 22 23344555544
Q ss_pred ---ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEe
Q 024032 181 ---SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALK 239 (273)
Q Consensus 181 ---~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~ 239 (273)
.+||||||||. |+ +.+|++|||||||+|||+. +.+.++.++ |.|||++ ..||++++|+
T Consensus 172 ~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~-g~TiiivtHd~~~~~~~adri~vl~ 250 (320)
T PRK13631 172 RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVMD 250 (320)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 57999999987 33 7899999999999999999 334555544 8999988 4689999999
Q ss_pred CCeEeeecChhhhccChhhHHHhCC
Q 024032 240 AGDSKPLDATKRLFSAPGLRKCSKI 264 (273)
Q Consensus 240 ~G~i~~~g~~~~l~~~~~l~~~~~~ 264 (273)
+|++++.|++++++..+.+...++.
T Consensus 251 ~G~i~~~g~~~~~~~~~~~~~~~~~ 275 (320)
T PRK13631 251 KGKILKTGTPYEIFTDQHIINSTSI 275 (320)
T ss_pred CCEEEEeCCHHHHhcCHHHHHHcCC
Confidence 9999999999999877665544444
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=316.10 Aligned_cols=225 Identities=16% Similarity=0.160 Sum_probs=179.7
Q ss_pred hhhhhhhhhccchhhhhhhhHHHHHHHhchhhhc------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcE
Q 024032 27 AKFDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVIT 100 (273)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~ 100 (273)
..+..+......++++..+.+|+.++++.++... ....+.++++|++|+|+..++++ |+++||++++||+
T Consensus 285 ~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~i----l~~inl~i~~G~~ 360 (571)
T TIGR02203 285 RPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDRPA----LDSISLVIEPGET 360 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcCCCCCcc----ccCeeEEecCCCE
Confidence 3445566666778889999999999886543211 11134699999999997545567 9999999999999
Q ss_pred EEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc------cCC
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR------GFN 168 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~------~~~ 168 (273)
++|+|+||||||||+++|+|+++ ++|+|.++|.++.+ +++.++|++|++.+ |..|++||. ..+
T Consensus 361 v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l-----f~~Ti~~Ni~~~~~~~~~ 435 (571)
T TIGR02203 361 VALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVL-----FNDTIANNIAYGRTEQAD 435 (571)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCccc-----ccccHHHHHhcCCCCCCC
Confidence 99999999999999999999999 99999999998763 56789999999984 456999983 356
Q ss_pred HHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--H----HHHHH
Q 024032 169 YNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--S----SPKYV 218 (273)
Q Consensus 169 ~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~----~l~~l 218 (273)
++++.++++.++ ..||||||||. |+ +++|+++||||||++||+. + .+..+
T Consensus 436 ~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~ 515 (571)
T TIGR02203 436 RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL 515 (571)
T ss_pred HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 777777777654 46999999987 45 8999999999999999999 2 23333
Q ss_pred HhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC-hhhHHHh
Q 024032 219 LRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA-PGLRKCS 262 (273)
Q Consensus 219 ~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~-~~l~~~~ 262 (273)
.+ ++|+|+| ..||+|++|++|++++.|+++++++. +...+.+
T Consensus 516 ~~--~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~ 565 (571)
T TIGR02203 516 MQ--GRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLH 565 (571)
T ss_pred hC--CCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHH
Confidence 22 7899888 56899999999999999999999854 3344333
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=282.64 Aligned_cols=182 Identities=19% Similarity=0.269 Sum_probs=146.6
Q ss_pred ceEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
+++++|++++|+... .++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 ~i~~~~l~~~~~~~~~~~~i----l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 76 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTA----LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKE 76 (233)
T ss_pred CeEEecceEEccCCCCceee----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHH
Confidence 378999999995321 256 999999999999999999999999999999999999 99999999998753
Q ss_pred ---CCccEEEEeccchhhhccCCccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH---
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ--- 191 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~--- 191 (273)
.++.+++++|++.++ ..+|+.||.. .. .+.+.+.++.++ .+|||||+||.
T Consensus 77 ~~~~~~~i~~~~q~~~~~----~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 152 (233)
T cd03258 77 LRKARRRIGMIFQHFNLL----SSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIA 152 (233)
T ss_pred HHHHHhheEEEccCcccC----CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHH
Confidence 146799999998753 3458888732 11 223455666655 67999999986
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
++ +.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|++++.|+++++...
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 153 RALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred HHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC
Confidence 33 7899999999999999999 33555554448899988 56899999999999999998887653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=285.81 Aligned_cols=192 Identities=15% Similarity=0.226 Sum_probs=155.1
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----C
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----S 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~ 138 (273)
..++++|++++|+ ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .
T Consensus 10 ~~l~i~~l~~~~~--~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 83 (265)
T PRK10575 10 TTFALRNVSFRVP--GRTL----LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF 83 (265)
T ss_pred ceEEEeeEEEEEC--CEEE----EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHH
Confidence 4689999999984 4567 999999999999999999999999999999999999 99999999998742 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC---------------CHHHHHHHHHHhc---------ccCCHHHHHHH---
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF---------------NYNRVHEGLEELS---------SWMSEGVHHNQ--- 191 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~---------------~~~~~~~~l~~~~---------~~LSgGqkq~~--- 191 (273)
++.+++++|++.. ++.+|+.+|..+ ..+.+.++++.++ ..|||||+||.
T Consensus 84 ~~~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 84 ARKVAYLPQQLPA----AEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred hhheEEeccCCCC----CCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHH
Confidence 4579999998764 344577776321 1223555666655 67999999986
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
|+ +.+|++|||||||++||+. +.+.++.++.|.|||++ ..||++++|++|+++..|+++++...+
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 239 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGE 239 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcCHH
Confidence 33 7899999999999999999 34555554447899888 568999999999999999999988766
Q ss_pred hhHHHhCCce
Q 024032 257 GLRKCSKISF 266 (273)
Q Consensus 257 ~l~~~~~~~~ 266 (273)
.+...|+.+.
T Consensus 240 ~~~~~~~~~~ 249 (265)
T PRK10575 240 TLEQIYGIPM 249 (265)
T ss_pred HHHHHhCCCc
Confidence 6777776543
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=346.69 Aligned_cols=214 Identities=17% Similarity=0.202 Sum_probs=175.3
Q ss_pred hhhccchhhhhhhhHHHHHHHhchhhhc--------c---CCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEE
Q 024032 33 VKLKLDLPNVSTLTPRLRVLREMERLAL--------I---APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 33 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~--------~---~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
......++.+..+.+|+.++.+.+++.. . +..+.|+++||+|+|+.+..++ |+|+||+|++||.+
T Consensus 1193 ~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~V----L~~is~~I~~GekV 1268 (1622)
T PLN03130 1193 LRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPV----LHGLSFEISPSEKV 1268 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCce----ecceeEEEcCCCEE
Confidence 3333456778899999999987654311 0 1135799999999997554567 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc----CCHHH
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG----FNYNR 171 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~----~~~~~ 171 (273)
||||+||||||||+++|.|+++ ++|+|.+||.++.+ +|+++++++|++.+ |..|+++|.. .++++
T Consensus 1269 aIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~L-----F~GTIreNLd~~~~~tdee 1343 (1622)
T PLN03130 1269 GIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVL-----FSGTVRFNLDPFNEHNDAD 1343 (1622)
T ss_pred EEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCcc-----ccccHHHHhCcCCCCCHHH
Confidence 9999999999999999999999 99999999999874 67899999999985 4569999943 46778
Q ss_pred HHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHH-HHh-cCC
Q 024032 172 VHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKY-VLR-RVD 223 (273)
Q Consensus 172 ~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~-l~~-~~g 223 (273)
+.++++.++ ..||||||||. |+ +++|+|||||||||+||+. +.+.+ +.+ ..+
T Consensus 1344 i~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~ 1423 (1622)
T PLN03130 1344 LWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 1423 (1622)
T ss_pred HHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
Confidence 888888765 47999999986 55 8999999999999999999 23322 222 127
Q ss_pred cEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 224 FAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 224 ~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
+|+|+| ..||+|+||++|+|++.|+|++++++
T Consensus 1424 ~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1424 CTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred CEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 899998 45899999999999999999999865
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=315.93 Aligned_cols=216 Identities=13% Similarity=0.114 Sum_probs=173.1
Q ss_pred hhhhhhccchhhhhhhhHHHHHHHhchhhh------ccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEE
Q 024032 30 DECVKLKLDLPNVSTLTPRLRVLREMERLA------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILL 103 (273)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~------~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~ai 103 (273)
..+......++.+..+.+|+.++++.++.. .....+.+++++++|+|+.++.++ |+++||++++|++++|
T Consensus 271 ~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~~~----l~~i~~~i~~G~~~~i 346 (569)
T PRK10789 271 LALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYPQTDHPA----LENVNFTLKPGQMLGI 346 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEECCCCCCcc----ccCeeEEECCCCEEEE
Confidence 344555567788899999999998754321 111134689999999997655566 9999999999999999
Q ss_pred EcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHHHH
Q 024032 104 MGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYNRV 172 (273)
Q Consensus 104 vGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~~ 172 (273)
+||||||||||+++|+|+++ ++|+|.++|+++.+ +++.+++++|++.+ |..|++||. ..+.+++
T Consensus 347 vG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l-----f~~ti~~Ni~~~~~~~~~~~~ 421 (569)
T PRK10789 347 CGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL-----FSDTVANNIALGRPDATQQEI 421 (569)
T ss_pred ECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee-----ccccHHHHHhcCCCCCCHHHH
Confidence 99999999999999999999 99999999998764 56789999999874 445999983 2355666
Q ss_pred HHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcC
Q 024032 173 HEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRV 222 (273)
Q Consensus 173 ~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~ 222 (273)
.++++.++ ..||||||||. |+ +++|++|||||||++||+. +.++.+. +
T Consensus 422 ~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~- 499 (569)
T PRK10789 422 EHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-E- 499 (569)
T ss_pred HHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-C-
Confidence 66665543 46999999986 44 8999999999999999999 2233333 2
Q ss_pred CcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 223 DFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 223 g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
++|+|++ ..||+|++|++|++++.|++++++++.
T Consensus 500 ~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 540 (569)
T PRK10789 500 GRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQS 540 (569)
T ss_pred CCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcC
Confidence 7899888 458999999999999999999998644
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=279.56 Aligned_cols=175 Identities=18% Similarity=0.203 Sum_probs=141.9
Q ss_pred eEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 67 NELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 67 i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
++++|++++|+.+. +++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++...++.++
T Consensus 1 l~~~~l~~~~~~~~~~~~i----l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTA----LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCCCcceEE----EeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEE
Confidence 47899999985321 456 999999999999999999999999999999999998 99999999999876677899
Q ss_pred EEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCE
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDC 199 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~i 199 (273)
+++|++.++ ..+|+.+|..+ . .+.+.++++.++ ..||||||||. |+ +.+|++
T Consensus 77 ~v~q~~~~~----~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 152 (220)
T cd03293 77 YVFQQDALL----PWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDV 152 (220)
T ss_pred EEecccccc----cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999988753 34588887321 1 234555666655 67999999986 33 789999
Q ss_pred EEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEe--CCeEeeecCh
Q 024032 200 ALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALK--AGDSKPLDAT 249 (273)
Q Consensus 200 LlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~--~G~i~~~g~~ 249 (273)
|||||||++||+. +.++++.++.|.|||++ .+||++++|+ +|++++.+++
T Consensus 153 llLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999 33555544447899888 4689999999 7999987764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=283.19 Aligned_cols=188 Identities=12% Similarity=0.198 Sum_probs=150.8
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
.+++++|+++.|+ ++++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 4 ~~l~~~~l~~~~~--~~~~----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 77 (255)
T PRK11300 4 PLLSVSGLMMRFG--GLLA----VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77 (255)
T ss_pred ceEEEeeEEEEEC--CEEE----EEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHH
Confidence 4689999999984 4567 999999999999999999999999999999999999 99999999998753
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC----------------------C----HHHHHHHHHHhc---------cc
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF----------------------N----YNRVHEGLEELS---------SW 182 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~----------------------~----~~~~~~~l~~~~---------~~ 182 (273)
.+..++|++|++.+ +..+|+.+|..+ . .+.+.+.++.++ .+
T Consensus 78 ~~~~i~~~~q~~~~----~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (255)
T PRK11300 78 ARMGVVRTFQHVRL----FREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGN 153 (255)
T ss_pred HhcCeEEeccCccc----CCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhh
Confidence 13457889998775 344588876321 0 123444555554 67
Q ss_pred CCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEe
Q 024032 183 MSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSK 244 (273)
Q Consensus 183 LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~ 244 (273)
||||||||. ++ +.+|++|||||||+|||+. +.+.++.++.|.|||++ .+||++++|++|+++
T Consensus 154 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 233 (255)
T PRK11300 154 LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL 233 (255)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 999999986 33 7899999999999999999 33555555447899988 568999999999999
Q ss_pred eecChhhhccChhhHHHh
Q 024032 245 PLDATKRLFSAPGLRKCS 262 (273)
Q Consensus 245 ~~g~~~~l~~~~~l~~~~ 262 (273)
..|+++++++.+.+.+.|
T Consensus 234 ~~~~~~~~~~~~~~~~~~ 251 (255)
T PRK11300 234 ANGTPEEIRNNPDVIKAY 251 (255)
T ss_pred ecCCHHHHhhChHHHHHH
Confidence 999999988766666554
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=312.92 Aligned_cols=217 Identities=15% Similarity=0.141 Sum_probs=172.7
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc-----cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEE
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-----IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITIL 102 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-----~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~a 102 (273)
.+..+......++.+..+.+|+.++++.++... ....+.++++|++|+|+.+++++ |+++||++++|+.++
T Consensus 273 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~----l~~~~~~i~~G~~~~ 348 (544)
T TIGR01842 273 PIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVPPGGKKPT----LRGISFRLQAGEALA 348 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCCCCCCCCeEEEEEEEEEcCCCCccc----cccceEEEcCCCEEE
Confidence 344555566777899999999999987643211 11234699999999997555567 999999999999999
Q ss_pred EEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc-----CCHHH
Q 024032 103 LMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-----FNYNR 171 (273)
Q Consensus 103 ivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-----~~~~~ 171 (273)
|+||||||||||+++|+|+++ ++|+|.++|.++.. +++.+++++|++.+| ..|++||.. .+.++
T Consensus 349 ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf-----~~ti~~Ni~~~~~~~~~~~ 423 (544)
T TIGR01842 349 IIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELF-----PGTVAENIARFGENADPEK 423 (544)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccc-----cccHHHHHhccCCCCCHHH
Confidence 999999999999999999999 99999999998864 567899999998753 458999842 34556
Q ss_pred HHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhc
Q 024032 172 VHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRR 221 (273)
Q Consensus 172 ~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~ 221 (273)
+.++++.++ ..||||||||. |+ +++|++|||||||++||+. +.+..+..+
T Consensus 424 ~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~ 503 (544)
T TIGR01842 424 IIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKAR 503 (544)
T ss_pred HHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhC
Confidence 555544332 57999999987 44 8999999999999999999 223333322
Q ss_pred CCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 222 VDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 222 ~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
++|+|++ ..||+|++|++|++++.|+++++.+
T Consensus 504 -~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 504 -GITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred -CCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 7899888 4589999999999999999998754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=290.89 Aligned_cols=178 Identities=16% Similarity=0.199 Sum_probs=146.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSH 140 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~ 140 (273)
.++++|++++|. +..+ |+++||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|.++.. .++
T Consensus 4 ~i~~~~l~~~~~--~~~~----l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 77 (303)
T TIGR01288 4 AIDLVGVSKSYG--DKVV----VNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARV 77 (303)
T ss_pred EEEEEeEEEEeC--CeEE----EcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhh
Confidence 689999999994 4566 999999999999999999999999999999999998 99999999998743 356
Q ss_pred cEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~ 196 (273)
.++|++|++.+ +..+|+++|.. .+. +.+.++++.++ ..||||||||. ++ +.+
T Consensus 78 ~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (303)
T TIGR01288 78 AIGVVPQFDNL----DPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIND 153 (303)
T ss_pred cEEEEeccccC----CcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 79999998775 34458888732 222 22344555554 67999999986 33 789
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|++|||||||+|||+. +.++++.++ |.|||++ .+||++++|++|+++..|+++++..
T Consensus 154 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 154 PQLLILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999 345566554 8999999 5689999999999999999988854
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=281.05 Aligned_cols=186 Identities=15% Similarity=0.193 Sum_probs=149.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
+++++|++++|+ ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .
T Consensus 5 ~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 78 (237)
T PRK11614 5 MLSFDKVSAHYG--KIQA----LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIM 78 (237)
T ss_pred EEEEEeEEEeeC--Ccee----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHH
Confidence 689999999984 3556 999999999999999999999999999999999999 99999999998753 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-----C----HHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cC
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-----N----YNRVHEGLEELS----------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-----~----~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~ 195 (273)
++.+++++|++..+ ...|+.+|... . .+.+.++++.+. ..|||||+||. |+ +.
T Consensus 79 ~~~i~~~~q~~~~~----~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (237)
T PRK11614 79 REAVAIVPEGRRVF----SRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMS 154 (237)
T ss_pred HhCEEEeccCcccC----CCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHh
Confidence 45699999987653 34588887321 1 122333444431 67999999986 33 78
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHHH
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRKC 261 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~~ 261 (273)
+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+++..|++++++.++.+.+.
T Consensus 155 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 233 (237)
T PRK11614 155 QPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSA 233 (237)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcCHHHHHH
Confidence 99999999999999999 335556554 8999888 56899999999999999999999876666555
Q ss_pred h
Q 024032 262 S 262 (273)
Q Consensus 262 ~ 262 (273)
|
T Consensus 234 ~ 234 (237)
T PRK11614 234 Y 234 (237)
T ss_pred h
Confidence 5
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=281.62 Aligned_cols=185 Identities=17% Similarity=0.232 Sum_probs=150.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
+++++|++++|+ ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .
T Consensus 2 ~i~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T TIGR03411 2 ILYLEGLSVSFD--GFKA----LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIA 75 (242)
T ss_pred eEEEEeeEEEcC--CeEE----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHH
Confidence 578999999984 4566 999999999999999999999999999999999998 99999999998753 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-------------------CHHHHHHHHHHhc---------ccCCHHHHHH
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------------------NYNRVHEGLEELS---------SWMSEGVHHN 190 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------------------~~~~~~~~l~~~~---------~~LSgGqkq~ 190 (273)
++.+++++|++.+ +..+|+.||..+ ..+.+.+.++.++ ..|||||+||
T Consensus 76 ~~~i~~~~q~~~~----~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qr 151 (242)
T TIGR03411 76 RAGIGRKFQKPTV----FENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQW 151 (242)
T ss_pred hcCeeEecccccc----CCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 3469999998775 334588877321 1224556666655 6799999998
Q ss_pred H---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 191 Q---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 191 ~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|++++.|+++++
T Consensus 152 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 6 33 7899999999999999999 33455544 6898888 56899999999999999999998
Q ss_pred ccChhhHHHh
Q 024032 253 FSAPGLRKCS 262 (273)
Q Consensus 253 ~~~~~l~~~~ 262 (273)
...+.+.+.|
T Consensus 230 ~~~~~~~~~~ 239 (242)
T TIGR03411 230 QADPRVIEVY 239 (242)
T ss_pred hcCHHHHHHh
Confidence 8766666665
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=284.77 Aligned_cols=193 Identities=14% Similarity=0.181 Sum_probs=155.9
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
...++++|++++|+ ++.+ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 5 ~~~l~i~~l~~~~~--~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 78 (265)
T PRK10253 5 VARLRGEQLTLGYG--KYTV----AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKE 78 (265)
T ss_pred ccEEEEEEEEEEEC--CEEE----eeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHH
Confidence 45789999999995 4567 999999999999999999999999999999999999 99999999998753
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC---------------CHHHHHHHHHHhc---------ccCCHHHHHHH--
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF---------------NYNRVHEGLEELS---------SWMSEGVHHNQ-- 191 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~---------------~~~~~~~~l~~~~---------~~LSgGqkq~~-- 191 (273)
.++.++|++|++.. ++..|+++|... ..+.+.++++.++ ..|||||+||.
T Consensus 79 ~~~~i~~v~q~~~~----~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~l 154 (265)
T PRK10253 79 VARRIGLLAQNATT----PGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWI 154 (265)
T ss_pred HhhheEEeeccCcC----CCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHH
Confidence 34579999999765 334577776321 0123455666655 67999999986
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|+ +.+|++|||||||+|||+. +.+.++.++.|.|||++ .+||++++|++|+++..|+++++...
T Consensus 155 aral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 234 (265)
T PRK10253 155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTA 234 (265)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhhH
Confidence 33 7999999999999999999 34555654448899888 56899999999999999999998776
Q ss_pred hhhHHHhCCce
Q 024032 256 PGLRKCSKISF 266 (273)
Q Consensus 256 ~~l~~~~~~~~ 266 (273)
+.+.+.|+.+.
T Consensus 235 ~~~~~~~~~~~ 245 (265)
T PRK10253 235 ELIERIYGLRC 245 (265)
T ss_pred HHHHHHhCCCc
Confidence 66777777643
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=331.73 Aligned_cols=210 Identities=17% Similarity=0.187 Sum_probs=177.5
Q ss_pred cchhhhhhhhHHHHHHHhchhh-h--------ccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCC
Q 024032 37 LDLPNVSTLTPRLRVLREMERL-A--------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFS 107 (273)
Q Consensus 37 ~~~~~~~~~~~r~~~~~~~~~~-~--------~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpn 107 (273)
-++..+..+..+++++++.++. . .+...+.|+++||+|+|+... .+ .+|+|+||+|++|+.+||||||
T Consensus 949 Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP-~~--~Il~~l~l~i~~GqTvALVG~S 1025 (1228)
T KOG0055|consen 949 PDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRP-DV--PVLNNLSLSIRAGQTVALVGPS 1025 (1228)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCC-Cc--hhhcCCcEEecCCCEEEEECCC
Confidence 4566788899999999987652 1 122356799999999998532 12 3499999999999999999999
Q ss_pred CChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHHHHHHHH
Q 024032 108 GSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYNRVHEGL 176 (273)
Q Consensus 108 GsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~~~~~l 176 (273)
||||||.+.+|-++|. ++|.|.+||.++++ +|++++.|-|+|.+ |+.|++||. ..+.+++.+++
T Consensus 1026 GsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~L-----F~~TIrENI~YG~~~vs~~eIi~Aa 1100 (1228)
T KOG0055|consen 1026 GSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVL-----FNGTIRENIAYGSEEVSEEEIIEAA 1100 (1228)
T ss_pred CCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchh-----hcccHHHHHhccCCCCCHHHHHHHH
Confidence 9999999999999999 99999999999975 68999999999995 566999993 24678888988
Q ss_pred HHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEE
Q 024032 177 EELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAM 226 (273)
Q Consensus 177 ~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~ti 226 (273)
+.++ .+||||||||. || ++||+||||||.||+||.+ +.+.+... |+|.
T Consensus 1101 k~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~--gRT~ 1178 (1228)
T KOG0055|consen 1101 KLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME--GRTT 1178 (1228)
T ss_pred HHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc--CCcE
Confidence 8876 68999999987 55 8999999999999999999 44555554 7777
Q ss_pred EEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 227 VVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 227 iiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
|+| +.||.|+|+++|+|+++|+|++|++..
T Consensus 1179 IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~~ 1215 (1228)
T KOG0055|consen 1179 IVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKR 1215 (1228)
T ss_pred EEEecchhhhhcCCEEEEEECCEEEecccHHHHHhCC
Confidence 776 679999999999999999999999754
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=287.61 Aligned_cols=190 Identities=15% Similarity=0.183 Sum_probs=150.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
+++++|++++|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 ml~~~~l~~~~~--~~~i----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 74 (271)
T PRK13638 1 MLATSDLWFRYQ--DEPV----LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74 (271)
T ss_pred CeEEEEEEEEcC--Cccc----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHH
Confidence 378999999984 3456 999999999999999999999999999999999999 99999999998741
Q ss_pred CCccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
.++.++|++|++..+ ++..++.+|.. ... +.+.++++.++ .+||||||||. |+
T Consensus 75 ~~~~i~~v~q~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 75 LRQQVATVFQDPEQQ---IFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred HHhheEEEeeChhhc---cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 245799999987531 23335655521 122 23445566554 67999999986 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
+.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|++++.|++++++..+...
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 230 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEAM 230 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcChhHH
Confidence 7899999999999999999 345556544 8899888 568999999999999999999988776666
Q ss_pred HHhCCc
Q 024032 260 KCSKIS 265 (273)
Q Consensus 260 ~~~~~~ 265 (273)
..++.+
T Consensus 231 ~~~~~~ 236 (271)
T PRK13638 231 EQAGLT 236 (271)
T ss_pred HhcCCC
Confidence 656653
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=286.43 Aligned_cols=186 Identities=15% Similarity=0.240 Sum_probs=150.8
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----C
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----S 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~ 138 (273)
..++++|++++|+.+.+++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .
T Consensus 4 ~~l~~~~l~~~~~~~~~~~----l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~ 79 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYA----LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDV 79 (279)
T ss_pred ceEEEEEEEEEeCCCCccc----eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH
Confidence 3689999999995433456 999999999999999999999999999999999999 99999999998853 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.++|++|++.. +++..|+.+|..+ .. +++.++++.++ ..|||||+||. |+ +
T Consensus 80 ~~~i~~~~q~~~~---~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 80 RRQVGMVFQNPDN---QFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred hhheEEEEeCHHH---hcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 4679999999742 1445688888432 22 23455666555 68999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
.+|++|||||||+|||+. +.++++.++.|.|||++ ..||++++|++|++++.|++++++....
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGH 232 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCHH
Confidence 999999999999999999 34556655458899998 3489999999999999999998876543
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=343.64 Aligned_cols=218 Identities=18% Similarity=0.184 Sum_probs=179.4
Q ss_pred hhhhhhccchhhhhhhhHHHHHHHhchhhhc--------c---CCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCC
Q 024032 30 DECVKLKLDLPNVSTLTPRLRVLREMERLAL--------I---APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPV 98 (273)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--------~---~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~G 98 (273)
..+...-.++..+..+.+|+.++.+.+++.. + +..+.|+++||+++|+.+..++ |+|+||+|++|
T Consensus 1237 ~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~v----L~~is~~I~~G 1312 (1522)
T TIGR00957 1237 NWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLV----LRHINVTIHGG 1312 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCccc----ccceeEEEcCC
Confidence 3445555677888999999999987653311 1 1235799999999997654566 99999999999
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc----CC
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG----FN 168 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~----~~ 168 (273)
|.+||||+||||||||+++|.|+++ ++|+|.+||.++.+ +|+++++++|++.+ |..|+++|.. .+
T Consensus 1313 ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~L-----F~gTIr~NLdp~~~~s 1387 (1522)
T TIGR00957 1313 EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVL-----FSGSLRMNLDPFSQYS 1387 (1522)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcc-----cCccHHHHcCcccCCC
Confidence 9999999999999999999999999 99999999999874 67899999999985 4559999954 46
Q ss_pred HHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHH-HHh-
Q 024032 169 YNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKY-VLR- 220 (273)
Q Consensus 169 ~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~-l~~- 220 (273)
++++.++++.++ ..||||||||. |+ +++|+|||||||||+||+. ..+.+ +.+
T Consensus 1388 deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~ 1467 (1522)
T TIGR00957 1388 DEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQ 1467 (1522)
T ss_pred HHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 788888888765 56999999986 55 8999999999999999999 23322 222
Q ss_pred cCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 221 RVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 221 ~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
..++|+|+| ..+|+|+||++|+|++.|+|++++++.
T Consensus 1468 ~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~ 1510 (1522)
T TIGR00957 1468 FEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQR 1510 (1522)
T ss_pred cCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 127899988 458999999999999999999998653
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=280.27 Aligned_cols=186 Identities=12% Similarity=0.186 Sum_probs=150.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
++++++++++|+ ++++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .
T Consensus 3 ~l~~~~l~~~~~--~~~~----l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (241)
T PRK10895 3 TLTAKNLAKAYK--GRRV----VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA 76 (241)
T ss_pred eEEEeCcEEEeC--CEEE----EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 588999999984 4567 999999999999999999999999999999999999 99999999998753 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
++.+++++|++.+ +..+|+.||... + ...+.+.++.++ ..|||||+||. |+
T Consensus 77 ~~~i~~~~q~~~~----~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 77 RRGIGYLPQEASI----FRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred HhCeEEeccCCcc----cccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 4579999998765 334588887321 1 123455556554 67999999986 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
+.+|++|||||||++||+. +.++.+.++ |.|||++ ..||++++|++|++++.|++++++..+.+.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 231 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS-GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVK 231 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcChhHh
Confidence 7899999999999999999 234555544 8899988 568999999999999999999998766666
Q ss_pred HHh
Q 024032 260 KCS 262 (273)
Q Consensus 260 ~~~ 262 (273)
+.|
T Consensus 232 ~~~ 234 (241)
T PRK10895 232 RVY 234 (241)
T ss_pred Hhh
Confidence 655
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=306.01 Aligned_cols=207 Identities=17% Similarity=0.171 Sum_probs=168.7
Q ss_pred hhhhhhHHHHHHHhchhhh-------ccCCCCceEE--EEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChH
Q 024032 41 NVSTLTPRLRVLREMERLA-------LIAPDGLNEL--RHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGK 111 (273)
Q Consensus 41 ~~~~~~~r~~~~~~~~~~~-------~~~~~~~i~~--~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGK 111 (273)
.+.++.+.+..+++.+... .......+++ +|+++.|+.|+ ++ ++++||++++|+.+||||+|||||
T Consensus 286 ~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~-~~----l~~l~~t~~~g~~talvG~SGaGK 360 (559)
T COG4988 286 AGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK-PA----LSDLNLTIKAGQLTALVGASGAGK 360 (559)
T ss_pred hhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCC-cc----cCCceeEecCCcEEEEECCCCCCH
Confidence 4466777777777655421 1111223444 59999998765 66 999999999999999999999999
Q ss_pred HHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHHHHHHHHHHhc
Q 024032 112 SSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYNRVHEGLEELS 180 (273)
Q Consensus 112 STLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~~~~~l~~~~ 180 (273)
|||+++|+|+++ ++|+|.++|.+..+ ++++++++.|++.+ |..|++||. ..+++++.++++.++
T Consensus 361 STLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~l-----f~gTireNi~l~~~~~s~e~i~~al~~a~ 435 (559)
T COG4988 361 STLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYL-----FAGTIRENILLARPDASDEEIIAALDQAG 435 (559)
T ss_pred HHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCcc-----ccccHHHHhhccCCcCCHHHHHHHHHHhc
Confidence 999999999999 99999999998864 67999999999985 455999994 356788888888876
Q ss_pred -------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--
Q 024032 181 -------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-- 229 (273)
Q Consensus 181 -------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-- 229 (273)
..|||||+||. |+ +++++++||||||++||.+ +.+.++.+ ++|++++
T Consensus 436 l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itH 513 (559)
T COG4988 436 LLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITH 513 (559)
T ss_pred HHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEc
Confidence 45999999987 55 7899999999999999999 33455665 6898888
Q ss_pred -----eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 230 -----NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 230 -----~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
..+|+|++|++|++++.|+++++..+....
T Consensus 514 rl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y 548 (559)
T COG4988 514 RLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLY 548 (559)
T ss_pred ChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHH
Confidence 458999999999999999999998665443
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=279.21 Aligned_cols=187 Identities=16% Similarity=0.183 Sum_probs=148.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSH 140 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~ 140 (273)
.++++|++++|+ ++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++
T Consensus 1 ~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~ 74 (236)
T TIGR03864 1 ALEVAGLSFAYG--ARRA----LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA 74 (236)
T ss_pred CEEEEeeEEEEC--CEEE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhh
Confidence 368999999984 4567 999999999999999999999999999999999999 99999999998753 235
Q ss_pred cEEEEeccchhhhccCCccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~ 196 (273)
.+++++|++.. ++.+|+.+|.. .. .+.+.+.++.++ ..|||||+||. |+ +.+
T Consensus 75 ~i~~~~q~~~~----~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 75 RLGVVFQQPTL----DLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred hEEEeCCCCCC----cccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 78999998764 34568888732 11 123455566554 67999999986 33 799
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC---hhhHH
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA---PGLRK 260 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~---~~l~~ 260 (273)
|++|||||||+|||+. +.++++.++.|.|+|++ ..||++++|++|++++.++++++... ..+.+
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 230 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGALGGADLEA 230 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHHcCcccHHH
Confidence 9999999999999999 33555554348899888 34899999999999999999888754 23545
Q ss_pred Hh
Q 024032 261 CS 262 (273)
Q Consensus 261 ~~ 262 (273)
.|
T Consensus 231 ~~ 232 (236)
T TIGR03864 231 AF 232 (236)
T ss_pred HH
Confidence 44
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=292.81 Aligned_cols=187 Identities=13% Similarity=0.177 Sum_probs=150.7
Q ss_pred CCceEEEEEEEEeecC-----------CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEEC
Q 024032 64 DGLNELRHKFLSYRSG-----------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFA 131 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g-----------~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~ 131 (273)
+.+++++|++++|..+ ...+ |+++||+|++||++||+|+||||||||+++|+|+++ ++|+|.++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~----l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~ 81 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKA----VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWL 81 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEE----EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEEC
Confidence 3479999999999632 1334 999999999999999999999999999999999999 99999999
Q ss_pred CeeCCC--------CCccEEEEeccchhhhccCCcccccccc---------cCCHH----HHHHHHHHhc----------
Q 024032 132 QTSSGN--------SSHTITMYMEEHNVMRSLQSGFCVYDSR---------GFNYN----RVHEGLEELS---------- 180 (273)
Q Consensus 132 g~~i~~--------~~~~i~~v~q~~~~~~~~~~~~tv~en~---------~~~~~----~~~~~l~~~~---------- 180 (273)
|+++.. .++.++|++|++... +...+||.+|. ..+.+ .+.+.++.++
T Consensus 82 G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~--l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p 159 (331)
T PRK15079 82 GKDLLGMKDDEWRAVRSDIQMIFQDPLAS--LNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP 159 (331)
T ss_pred CEECCcCCHHHHHHHhCceEEEecCchhh--cCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc
Confidence 998853 346799999997411 13345888873 12322 3445555544
Q ss_pred ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCe
Q 024032 181 SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGD 242 (273)
Q Consensus 181 ~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~ 242 (273)
.+|||||+||+ |+ +.+|++|||||||++||+. ++++++.++.|.|+|+| .+||+|++|++|+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ 239 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGH 239 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 67999999987 33 7999999999999999999 34566666558999999 5689999999999
Q ss_pred EeeecChhhhccCh
Q 024032 243 SKPLDATKRLFSAP 256 (273)
Q Consensus 243 i~~~g~~~~l~~~~ 256 (273)
+++.|++++++.++
T Consensus 240 ive~g~~~~i~~~~ 253 (331)
T PRK15079 240 AVELGTYDEVYHNP 253 (331)
T ss_pred EEEEcCHHHHHcCC
Confidence 99999999998654
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=282.33 Aligned_cols=191 Identities=16% Similarity=0.207 Sum_probs=153.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
+++++|++++|+ ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .+
T Consensus 2 ~l~~~~l~~~~~--~~~i----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (258)
T PRK13548 2 MLEARNLSVRLG--GRTL----LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA 75 (258)
T ss_pred eEEEEeEEEEeC--Ceee----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhh
Confidence 478999999984 4567 999999999999999999999999999999999999 99999999998753 34
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-----------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-c-
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-----------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-L- 194 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-----------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l- 194 (273)
+.+++++|++.+ ++.+|++||..+ ..+.+.++++.++ .+||||||||. |+ +
T Consensus 76 ~~i~~~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~ 151 (258)
T PRK13548 76 RRRAVLPQHSSL----SFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQ 151 (258)
T ss_pred hheEEEccCCcC----CCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 578999998764 345688887321 1223555666655 67999999986 34 4
Q ss_pred -----CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 195 -----RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 195 -----~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|+++..|+++++...
T Consensus 152 ~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (258)
T PRK13548 152 LWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTP 231 (258)
T ss_pred ccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhCh
Confidence 489999999999999999 34556652348899988 46899999999999999999998876
Q ss_pred hhhHHHhCCce
Q 024032 256 PGLRKCSKISF 266 (273)
Q Consensus 256 ~~l~~~~~~~~ 266 (273)
+.+...|+...
T Consensus 232 ~~~~~~~~~~~ 242 (258)
T PRK13548 232 ETLRRVYGADV 242 (258)
T ss_pred HHHHHHhCCCc
Confidence 65666666443
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=282.39 Aligned_cols=190 Identities=15% Similarity=0.233 Sum_probs=154.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
+++++|++++|. ++.+ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .+
T Consensus 2 ~l~~~~l~~~~~--~~~i----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (255)
T PRK11231 2 TLRTENLTVGYG--TKRI----LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75 (255)
T ss_pred EEEEEeEEEEEC--CEEE----EeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHh
Confidence 478999999984 4567 999999999999999999999999999999999999 99999999988643 34
Q ss_pred ccEEEEeccchhhhccCCcccccccccC---------------CHHHHHHHHHHhc---------ccCCHHHHHHH---H
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF---------------NYNRVHEGLEELS---------SWMSEGVHHNQ---R 192 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~---------------~~~~~~~~l~~~~---------~~LSgGqkq~~---r 192 (273)
+.++|++|++.. +..+|++||..+ ..+.+.++++.++ ..|||||+||. |
T Consensus 76 ~~i~~~~q~~~~----~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 76 RRLALLPQHHLT----PEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAM 151 (255)
T ss_pred hheEEecccCCC----CCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHH
Confidence 569999998764 334577776321 1123455566554 67999999986 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+ +.+|++|||||||+|||+. +.++++.++ |.|||++ ++||++++|++|+++..|++++++..+.
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 230 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGL 230 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCHHH
Confidence 3 7899999999999999999 335555544 8899888 5689999999999999999999987777
Q ss_pred hHHHhCCce
Q 024032 258 LRKCSKISF 266 (273)
Q Consensus 258 l~~~~~~~~ 266 (273)
+...|+...
T Consensus 231 ~~~~~~~~~ 239 (255)
T PRK11231 231 LRTVFDVEA 239 (255)
T ss_pred HHHHhCCCe
Confidence 788886543
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=279.26 Aligned_cols=182 Identities=15% Similarity=0.199 Sum_probs=147.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
+++++|++++|+ ++++ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~--~~~i----l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 74 (240)
T PRK09493 1 MIEFKNVSKHFG--PTQV----LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74 (240)
T ss_pred CEEEEeEEEEEC--CeEE----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHH
Confidence 368999999984 4567 999999999999999999999999999999999999 99999999998753
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
.++.++|++|++.. ++.+|+++|..+ . .+.+.++++.++ ..||+||+||. |+
T Consensus 75 ~~~~i~~~~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a 150 (240)
T PRK09493 75 IRQEAGMVFQQFYL----FPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARA 150 (240)
T ss_pred HhhceEEEeccccc----CCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHH
Confidence 24578999998765 344588887422 1 123445566554 67999999986 33
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|++++.|+++++.+.+..
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 229 (240)
T PRK09493 151 LAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPS 229 (240)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCCch
Confidence 7899999999999999999 335555544 8899888 46899999999999999999998765543
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=312.82 Aligned_cols=213 Identities=15% Similarity=0.165 Sum_probs=166.7
Q ss_pred hhhccchhhhhhhhHHHHHHHhchhhh--------ccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEE
Q 024032 33 VKLKLDLPNVSTLTPRLRVLREMERLA--------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLM 104 (273)
Q Consensus 33 ~~~~~~~~~~~~~~~r~~~~~~~~~~~--------~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aiv 104 (273)
......+..+..+..|+.++++.++.. .....+.++++|++|+|+. ++++ |+++||++++|++++|+
T Consensus 293 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~-~~~i----L~~inl~i~~G~~v~Iv 367 (588)
T PRK13657 293 VAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDN-SRQG----VEDVSFEAKPGQTVAIV 367 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCC-CCce----ecceeEEECCCCEEEEE
Confidence 333444566777777777776543211 0011236999999999963 3456 99999999999999999
Q ss_pred cCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHHHHH
Q 024032 105 GFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYNRVH 173 (273)
Q Consensus 105 GpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~~~ 173 (273)
|+||||||||+|+|+|+++ ++|+|.++|.++.+ +++.++|++|++.+ |..|++||. ..+++++.
T Consensus 368 G~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-----f~~Ti~~Ni~~~~~~~~d~~i~ 442 (588)
T PRK13657 368 GPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGL-----FNRSIEDNIRVGRPDATDEEMR 442 (588)
T ss_pred CCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCccc-----ccccHHHHHhcCCCCCCHHHHH
Confidence 9999999999999999999 99999999998874 56889999999884 456999983 33466777
Q ss_pred HHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHH-HHHHh-cCCcE
Q 024032 174 EGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSP-KYVLR-RVDFA 225 (273)
Q Consensus 174 ~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l-~~l~~-~~g~t 225 (273)
++++.++ ..||||||||. |+ +++|++||||||||+||+. ..+ +.+.+ ..++|
T Consensus 443 ~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~t 522 (588)
T PRK13657 443 AAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRT 522 (588)
T ss_pred HHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCE
Confidence 6666554 46999999986 44 8999999999999999999 222 22322 12789
Q ss_pred EEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 226 MVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 226 iiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
+|+| +.||+|++|++|++++.|++++++..
T Consensus 523 vIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 523 TFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR 559 (588)
T ss_pred EEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC
Confidence 9888 45899999999999999999999744
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=285.35 Aligned_cols=182 Identities=18% Similarity=0.210 Sum_probs=148.0
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
+..++++|++++|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 5 ~~~l~~~~l~~~~~--~~~i----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (269)
T PRK11831 5 ANLVDMRGVSFTRG--NRCI----FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSR 78 (269)
T ss_pred cceEEEeCeEEEEC--CEEE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhh
Confidence 34789999999984 4567 999999999999999999999999999999999998 99999999998752
Q ss_pred ---CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc---------ccCCHHHHHHH--
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS---------SWMSEGVHHNQ-- 191 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~---------~~LSgGqkq~~-- 191 (273)
.++.+++++|++.+ +..+|+.||..+ +. +.+.+.++.++ .+||||||||.
T Consensus 79 ~~~~~~~i~~v~q~~~~----~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~l 154 (269)
T PRK11831 79 LYTVRKRMSMLFQSGAL----FTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAAL 154 (269)
T ss_pred HHHHhhcEEEEeccccc----CCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 24568999998765 334588887321 11 23445566655 67999999987
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|+ +.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|++++.|+++++++.
T Consensus 155 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 155 ARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 33 7899999999999999999 34555654447899888 45899999999999999999998764
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=275.83 Aligned_cols=177 Identities=18% Similarity=0.211 Sum_probs=142.4
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------CC
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------SS 139 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~~ 139 (273)
++++|++++|. ++++ |+++||++++|+++||+||||||||||+++|+|+++ ++|+|.++|.++.. .+
T Consensus 1 l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (222)
T cd03224 1 LEVENLNAGYG--KSQI----LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74 (222)
T ss_pred CEEeeEEeecC--CeeE----eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHh
Confidence 57899999884 4566 999999999999999999999999999999999999 99999999998753 24
Q ss_pred ccEEEEeccchhhhccCCcccccccccC---------CHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCC
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF---------NYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~---------~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~ 196 (273)
+.+++++|++.+ +..+|+++|..+ ..+.+.+.++.+. .+||||||||. |+ +.+
T Consensus 75 ~~i~~~~q~~~~----~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 150 (222)
T cd03224 75 AGIGYVPEGRRI----FPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSR 150 (222)
T ss_pred cCeEEecccccc----CCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcC
Confidence 569999999875 344588887321 1122334444441 57999999986 33 789
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+++..|++++++.
T Consensus 151 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 151 PKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999 345555543 8899888 5689999999999999998887653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=277.11 Aligned_cols=176 Identities=13% Similarity=0.169 Sum_probs=142.2
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCcc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHT 141 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~ 141 (273)
++++|+++.|..+.+++ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.
T Consensus 1 l~~~~l~~~~~~~~~~i----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (220)
T cd03263 1 LQIRNLTKTYKKGTKPA----VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQS 76 (220)
T ss_pred CEEEeeEEEeCCCCcee----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhh
Confidence 57899999995432567 999999999999999999999999999999999998 99999999998753 3567
Q ss_pred EEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
+++++|++.+ +...|+.+|.. ... +.+.++++.++ .+||+||+||. |+ +.+|
T Consensus 77 i~~v~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (220)
T cd03263 77 LGYCPQFDAL----FDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGP 152 (220)
T ss_pred EEEecCcCCc----cccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998765 33458888732 121 23455566554 67999999986 33 7899
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|++++.|+++++
T Consensus 153 ~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 153 SVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999 33455543 5888888 56899999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=302.99 Aligned_cols=206 Identities=15% Similarity=0.167 Sum_probs=169.8
Q ss_pred chhhhhhhhHHHHHHHhchhhhc--------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCC
Q 024032 38 DLPNVSTLTPRLRVLREMERLAL--------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGS 109 (273)
Q Consensus 38 ~~~~~~~~~~r~~~~~~~~~~~~--------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGs 109 (273)
.+|.+..-++++.++++.+++.. ....+.|+++||+|.|..+ +++ |+||||++++|+.+|||||||+
T Consensus 501 ~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~-k~v----l~disF~v~pGktvAlVG~SGa 575 (790)
T KOG0056|consen 501 SIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPG-KPV----LSDISFTVQPGKTVALVGPSGA 575 (790)
T ss_pred HHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCC-Cce----eecceEEecCCcEEEEECCCCC
Confidence 34667777788888877665421 1235689999999999864 677 9999999999999999999999
Q ss_pred hHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHHHHHHHHHH
Q 024032 110 GKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYNRVHEGLEE 178 (273)
Q Consensus 110 GKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~~~~~l~~ 178 (273)
||||++++|.++++ .+|+|.|||+|++. +|+.||.|+||..+ |+.|+..|. ..+.+++.++++.
T Consensus 576 GKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvL-----FNdTI~yNIryak~~AsneevyaAAkA 650 (790)
T KOG0056|consen 576 GKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVL-----FNDTILYNIRYAKPSASNEEVYAAAKA 650 (790)
T ss_pred chhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCccee-----ecceeeeheeecCCCCChHHHHHHHHH
Confidence 99999999999999 99999999999973 78899999999985 455888883 4456777766665
Q ss_pred hc--------------------ccCCHHHHHHHHh----cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEE
Q 024032 179 LS--------------------SWMSEGVHHNQRC----LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVV 228 (273)
Q Consensus 179 ~~--------------------~~LSgGqkq~~r~----l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiii 228 (273)
+. -.||||||||+++ +++|.+++|||.||+||.. ..+.+++. ++|-|+
T Consensus 651 A~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIV 728 (790)
T KOG0056|consen 651 AQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIV 728 (790)
T ss_pred hhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEE
Confidence 54 5699999998733 8999999999999999988 33566776 555554
Q ss_pred c-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 229 S-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 229 v-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
| -+||.|+|+++|+|++.|.|+|++..
T Consensus 729 vAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 729 VAHRLSTIVNADLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred EeeeehheecccEEEEEeCCeEeecCcHHHHHhc
Confidence 4 56899999999999999999999865
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=284.41 Aligned_cols=193 Identities=13% Similarity=0.172 Sum_probs=154.2
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----C
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----S 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~ 138 (273)
.+++++|++++|+.+++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .
T Consensus 6 ~~l~~~nl~~~~~~~~~~i----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNA----LKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred eEEEEEeEEEEcCCCCccc----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH
Confidence 4789999999996444556 999999999999999999999999999999999999 99999999998753 3
Q ss_pred CccEEEEeccchhhhccCCccccccccc-------CCHH----HHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNYN----RVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~~----~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.++|++|++... ++..|++||.. +..+ .+.++++.++ .+|||||+||. |+ +
T Consensus 82 ~~~i~~v~q~~~~~---~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 82 RKKIGIIFQNPDNQ---FIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred hcceEEEEeCHHHh---cCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 56799999997421 44568888842 2222 2445556554 67999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChhhHHH
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPGLRKC 261 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~~ 261 (273)
.+|++|||||||+|||+. +.++++.++.+.|||++ ..||++++|++|+++..|+++++...+.+...
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 238 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNKEILEK 238 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCHHHHHh
Confidence 899999999999999999 34555554435899888 45899999999999999999998877665555
Q ss_pred hCC
Q 024032 262 SKI 264 (273)
Q Consensus 262 ~~~ 264 (273)
++.
T Consensus 239 ~~~ 241 (271)
T PRK13632 239 AKI 241 (271)
T ss_pred cCC
Confidence 554
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=293.45 Aligned_cols=186 Identities=17% Similarity=0.254 Sum_probs=150.9
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCC-
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG- 136 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~- 136 (273)
.+.++++|++++|..+..++ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 78 ~~~i~~~nls~~y~~~~~~~----L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHV----LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CceEEEEeeEEEecCCCcee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 45899999999997544566 999999999999999999999999999999999984 4899999999985
Q ss_pred ------CCCccEEEEeccchhhhccCCcccccccccC-------CHHH-----HHHHHHHhc-------------ccCCH
Q 024032 137 ------NSSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NYNR-----VHEGLEELS-------------SWMSE 185 (273)
Q Consensus 137 ------~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~~~-----~~~~l~~~~-------------~~LSg 185 (273)
.+++.+++++|++.+ +..|+++|..+ ..++ +.++++.++ ..|||
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~-----~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSg 228 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTP-----FEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSG 228 (329)
T ss_pred cccchHhhhccEEEEecCCcc-----CCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCH
Confidence 246789999999874 34689888532 1111 233344332 67999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
|||||. |+ +++|+||||||||++||+. +.++.+.+ +.|||++ .+||+|++|++|++++.|
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999986 44 7999999999999999999 33455544 6898888 458999999999999999
Q ss_pred ChhhhccChhhHH
Q 024032 248 ATKRLFSAPGLRK 260 (273)
Q Consensus 248 ~~~~l~~~~~l~~ 260 (273)
+++++++.|..+.
T Consensus 307 ~~~~l~~~~~~~~ 319 (329)
T PRK14257 307 ETKTIFIHPKNKR 319 (329)
T ss_pred CHHHHhcCCCcHH
Confidence 9999998776553
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=281.63 Aligned_cols=189 Identities=17% Similarity=0.212 Sum_probs=153.2
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSH 140 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~ 140 (273)
++++|++++|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++
T Consensus 2 l~~~~l~~~~~--~~~i----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (256)
T TIGR03873 2 LRLSRVSWSAG--GRLI----VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75 (256)
T ss_pred ceEEeEEEEEC--CEEE----EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhh
Confidence 67899999984 4567 999999999999999999999999999999999999 99999999998753 245
Q ss_pred cEEEEeccchhhhccCCcccccccccC---------------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGF---------------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~---------------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
.++|++|++.. ++.+|+.+|..+ ..+.+.++++.++ ..|||||+||. |+
T Consensus 76 ~i~~~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (256)
T TIGR03873 76 RVALVEQDSDT----AVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARA 151 (256)
T ss_pred heEEecccCcc----CCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 68999998753 445688887321 0123455666654 67999999986 33
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+.+|+++||||||++||+. +.++++.++ |.|||++ .+||++++|++|++++.|+++++.....+
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 230 (256)
T TIGR03873 152 LAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT-GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALI 230 (256)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhCHHHH
Confidence 7899999999999999999 345566544 8899888 56899999999999999999998776666
Q ss_pred HHHhCCce
Q 024032 259 RKCSKISF 266 (273)
Q Consensus 259 ~~~~~~~~ 266 (273)
...|+.+.
T Consensus 231 ~~~~~~~~ 238 (256)
T TIGR03873 231 RAVYGVDA 238 (256)
T ss_pred HHHhCCCc
Confidence 77777654
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=285.89 Aligned_cols=190 Identities=17% Similarity=0.166 Sum_probs=151.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
+++++|++++|.. +.++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~~-~~~~----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (275)
T PRK13639 1 ILETRDLKYSYPD-GTEA----LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE 75 (275)
T ss_pred CEEEEEEEEEeCC-CCee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHH
Confidence 3789999999952 3456 999999999999999999999999999999999999 99999999998741
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
.++.++|++|++... ++..|+.||..+ .. +.+.++++.++ .+|||||+||. |+
T Consensus 76 ~~~~i~~v~q~~~~~---~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 76 VRKTVGIVFQNPDDQ---LFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred HHhheEEEeeChhhh---hccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 246799999997421 334588887422 11 23455666654 77999999986 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
+.+|++|||||||+|||+. +.+.++.++ |.|||++ .+||++++|++|++++.|++++++..+...
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 231 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETI 231 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcChHHH
Confidence 7999999999999999999 335556554 8999998 468999999999999999999988765544
Q ss_pred HHhCC
Q 024032 260 KCSKI 264 (273)
Q Consensus 260 ~~~~~ 264 (273)
..++.
T Consensus 232 ~~~~~ 236 (275)
T PRK13639 232 RKANL 236 (275)
T ss_pred HhcCC
Confidence 44444
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=291.82 Aligned_cols=186 Identities=14% Similarity=0.151 Sum_probs=149.6
Q ss_pred CceEEEEEEEEeecC--------CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeC
Q 024032 65 GLNELRHKFLSYRSG--------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g--------~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i 135 (273)
.+++++|++++|... ...+ |++|||+|++||++||+|+||||||||+++|+|+++ ++|+|.++|+++
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~----l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l 79 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKA----LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDL 79 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeE----EeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEc
Confidence 478999999999631 1344 999999999999999999999999999999999999 999999999987
Q ss_pred CC--------CCccEEEEeccchhhhccCCcccccccc--------cCC----HHHHHHHHHHhc----------ccCCH
Q 024032 136 GN--------SSHTITMYMEEHNVMRSLQSGFCVYDSR--------GFN----YNRVHEGLEELS----------SWMSE 185 (273)
Q Consensus 136 ~~--------~~~~i~~v~q~~~~~~~~~~~~tv~en~--------~~~----~~~~~~~l~~~~----------~~LSg 185 (273)
.. .++++++++|++... +...+++.++. ... .+++.++++.++ .+|||
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~--l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGS--LNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSG 157 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhh--cCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCH
Confidence 53 346799999997421 13334665542 112 234566666654 68999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
||+||. |+ +.+|++||+||||++||+. ++++++.++.|.|||+| .+||+|++|++|+|++.|
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999987 33 7899999999999999999 34566666568999998 468999999999999999
Q ss_pred ChhhhccCh
Q 024032 248 ATKRLFSAP 256 (273)
Q Consensus 248 ~~~~l~~~~ 256 (273)
+++++++++
T Consensus 238 ~~~~~~~~p 246 (327)
T PRK11308 238 TKEQIFNNP 246 (327)
T ss_pred CHHHHhcCC
Confidence 999998754
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=284.95 Aligned_cols=194 Identities=15% Similarity=0.185 Sum_probs=155.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C--------ccEEEECCeeCC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R--------SGLVLFAQTSSG 136 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~--------~G~I~i~g~~i~ 136 (273)
+++++|++++|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ + +|+|.++|.++.
T Consensus 1 ml~~~nl~~~~~--~~~i----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~ 74 (272)
T PRK13547 1 MLTADHLHVARR--HRAI----LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74 (272)
T ss_pred CeEEEEEEEEEC--CEeE----EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc
Confidence 378999999983 4567 999999999999999999999999999999999998 7 899999999875
Q ss_pred C-----CCccEEEEeccchhhhccCCcccccccccC---------------CHHHHHHHHHHhc---------ccCCHHH
Q 024032 137 N-----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF---------------NYNRVHEGLEELS---------SWMSEGV 187 (273)
Q Consensus 137 ~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~---------------~~~~~~~~l~~~~---------~~LSgGq 187 (273)
. .++.+++++|++.. ++.+|+.||..+ ..+.+.++++.++ .+|||||
T Consensus 75 ~~~~~~~~~~~~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 150 (272)
T PRK13547 75 AIDAPRLARLRAVLPQAAQP----AFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGE 150 (272)
T ss_pred cCCHHHHHhhcEEecccCCC----CCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence 3 24557899998653 344688877321 1123455666655 6899999
Q ss_pred HHHH---Hh-c---------CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC
Q 024032 188 HHNQ---RC-L---------RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKA 240 (273)
Q Consensus 188 kq~~---r~-l---------~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~ 240 (273)
+||. |+ + .+|++|||||||++||+. +.++++.++.|.|||++ ++||++++|++
T Consensus 151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~ 230 (272)
T PRK13547 151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLAD 230 (272)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 9986 34 4 499999999999999999 33455554447899888 46899999999
Q ss_pred CeEeeecChhhhccChhhHHHhCCceEEE
Q 024032 241 GDSKPLDATKRLFSAPGLRKCSKISFCIL 269 (273)
Q Consensus 241 G~i~~~g~~~~l~~~~~l~~~~~~~~~~~ 269 (273)
|++++.|+++++++...+...|+.++.+.
T Consensus 231 G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 259 (272)
T PRK13547 231 GAIVAHGAPADVLTPAHIARCYGFAVRLV 259 (272)
T ss_pred CeEEEecCHHHHcCHHHHHHHhCCCeEEE
Confidence 99999999999987666788888765543
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=283.55 Aligned_cols=176 Identities=15% Similarity=0.187 Sum_probs=146.2
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
..++++|++++|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++...++.++
T Consensus 11 ~~l~i~~l~~~~~--~~~i----l~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~ 84 (257)
T PRK11247 11 TPLLLNAVSKRYG--ERTV----LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTR 84 (257)
T ss_pred CcEEEEEEEEEEC--Ccce----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceE
Confidence 4699999999994 4556 999999999999999999999999999999999999 99999999988766677899
Q ss_pred EEeccchhhhccCCcccccccccC-----CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCc
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKND 205 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEP 205 (273)
|++|++.++ ...|++||..+ ..+++.++++.++ .+||||||||. |+ +.+|++||||||
T Consensus 85 ~v~q~~~l~----~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEP 160 (257)
T PRK11247 85 LMFQDARLL----PWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEP 160 (257)
T ss_pred EEecCccCC----CCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999997653 34589988532 1345566677665 67999999986 33 789999999999
Q ss_pred CCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChh
Q 024032 206 AEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATK 250 (273)
Q Consensus 206 ts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~ 250 (273)
|++||+. +.++++.++.+.|||++ .+||++++|++|+++..++.+
T Consensus 161 t~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 161 LGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999 33455544448899888 468999999999999887654
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=284.39 Aligned_cols=178 Identities=17% Similarity=0.216 Sum_probs=145.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
.++++|++++|+. +..+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++.. .+
T Consensus 4 ~l~~~~l~~~~~~-~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 78 (274)
T PRK13647 4 IIEVEDLHFRYKD-GTKA----LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVR 78 (274)
T ss_pred eEEEEEEEEEeCC-CCee----eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHH
Confidence 6899999999953 3456 999999999999999999999999999999999999 99999999998753 34
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~ 195 (273)
+.++|++|++.. .++..||.+|..+ .. +++.++++.++ ..|||||+||. |+ +.
T Consensus 79 ~~i~~v~q~~~~---~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 79 SKVGLVFQDPDD---QVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred hhEEEEecChhh---hhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 679999998742 1345688888432 21 23455666655 78999999986 33 79
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
+|++|||||||++||+. +.+++++++ |.|||++ ++||++++|++|++++.|+++++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999 345566555 8999998 56899999999999999998754
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=273.46 Aligned_cols=170 Identities=13% Similarity=0.176 Sum_probs=139.5
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i 142 (273)
++++|++++|. ++++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.+
T Consensus 1 l~~~~l~~~~~--~~~~----l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 74 (208)
T cd03268 1 LKTNDLTKTYG--KKRV----LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRI 74 (208)
T ss_pred CEEEEEEEEEC--CeEe----EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhE
Confidence 47899999984 4567 999999999999999999999999999999999999 99999999988743 35679
Q ss_pred EEEeccchhhhccCCccccccccc-------CCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEE
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRG-------FNYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALM 202 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~-------~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlL 202 (273)
++++|++.+ ++..|+.||.. ...+++.++++.++ .+||||||||. ++ +.+|++|||
T Consensus 75 ~~~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 150 (208)
T cd03268 75 GALIEAPGF----YPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLIL 150 (208)
T ss_pred EEecCCCcc----CccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999998764 44568888832 23445666666665 67999999986 33 789999999
Q ss_pred cCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 203 KNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 203 DEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
||||++||+. +.++++.++ |.|+|++ ..||++++|++|++++.|
T Consensus 151 DEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 151 DEPTNGLDPDGIKELRELILSLRDQ-GITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999 334555543 8899888 468999999999998654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=284.70 Aligned_cols=193 Identities=16% Similarity=0.208 Sum_probs=153.9
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Cc---cEEEECCeeCCC---
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS---GLVLFAQTSSGN--- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~---G~I~i~g~~i~~--- 137 (273)
..++++|++++|....+++ |+++||+|++||++||+||||||||||+++|+|+++ ++ |+|.++|+++..
T Consensus 4 ~~l~i~~l~~~~~~~~~~~----l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPA----LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred ceEEEEEEEEEcCCCCccc----eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH
Confidence 4689999999995433446 999999999999999999999999999999999998 66 999999998753
Q ss_pred --CCccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---H
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---R 192 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r 192 (273)
.++++++++|++..+ ++..|++||..+ .. +.+.++++.++ ..|||||+||. +
T Consensus 80 ~~~~~~ig~v~q~~~~~---~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~lar 156 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQ---FVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAG 156 (282)
T ss_pred HHHHhheEEEEECHHHh---hccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHH
Confidence 346799999997521 445688888432 22 23455666655 67999999986 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+ +.+|++|||||||+|||+. +.++++.++.|.|||++ ..||++++|++|++++.|++++++..+..
T Consensus 157 al~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 236 (282)
T PRK13640 157 ILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSKVEM 236 (282)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHH
Confidence 3 7999999999999999999 34555655448899998 45899999999999999999998876654
Q ss_pred HHHhCC
Q 024032 259 RKCSKI 264 (273)
Q Consensus 259 ~~~~~~ 264 (273)
...++.
T Consensus 237 ~~~~~~ 242 (282)
T PRK13640 237 LKEIGL 242 (282)
T ss_pred HHHcCC
Confidence 444444
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=273.63 Aligned_cols=171 Identities=20% Similarity=0.293 Sum_probs=138.2
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i 142 (273)
++++|++++|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.+
T Consensus 1 i~~~~l~~~~~--~~~~----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i 74 (213)
T cd03301 1 VELENVTKRFG--NVTA----LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDI 74 (213)
T ss_pred CEEEeeEEEEC--Ceee----eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceE
Confidence 47899999984 3566 999999999999999999999999999999999998 99999999998753 23569
Q ss_pred EEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
++++|++.+ +...|+++|..+ .. +++.++++.++ .+||||||||. |+ +.+|+
T Consensus 75 ~~~~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 150 (213)
T cd03301 75 AMVFQNYAL----YPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPK 150 (213)
T ss_pred EEEecChhh----ccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999998765 334588887321 12 23445556554 67999999986 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
++||||||+|||+. +.++++.++.|.|||++ .+||++++|++|++++.|
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 151 VFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999 34555655448899998 468999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=339.89 Aligned_cols=216 Identities=16% Similarity=0.174 Sum_probs=175.4
Q ss_pred hhhhhhccchhhhhhhhHHHHHHHhchhhh-------c-----cCCCCceEEEEEEEEeecC-CeeeeccceeeeeeEEc
Q 024032 30 DECVKLKLDLPNVSTLTPRLRVLREMERLA-------L-----IAPDGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIP 96 (273)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-------~-----~~~~~~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~ 96 (273)
..+.....+++.+.++.+|+.++++.++.. . ....+.|+++||+|+|+.+ +.++ |+++||+|+
T Consensus 1117 ~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~v----L~~lsl~i~ 1192 (1466)
T PTZ00265 1117 GKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPI----YKDLTFSCD 1192 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCcc----ccCeeEEEc
Confidence 445556677889999999999998754310 0 0112469999999999753 3456 999999999
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc-C---------------------------------------------------
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS-R--------------------------------------------------- 124 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~-~--------------------------------------------------- 124 (273)
+|+++|||||||||||||+++|.|+|+ +
T Consensus 1193 ~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1272 (1466)
T PTZ00265 1193 SKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTV 1272 (1466)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999998 4
Q ss_pred ---ccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHHHHHHHHHHhc-----------
Q 024032 125 ---SGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYNRVHEGLEELS----------- 180 (273)
Q Consensus 125 ---~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~~~~~l~~~~----------- 180 (273)
+|+|+++|.++.+ +|+.+++|+|++.+ |..||+||. ..+.++++++++.++
T Consensus 1273 ~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~L-----F~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~G 1347 (1466)
T PTZ00265 1273 FKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPML-----FNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNK 1347 (1466)
T ss_pred CCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcc-----ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccc
Confidence 8999999999864 67899999999984 566999993 346778888887765
Q ss_pred ---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--H----HHHHHHhcCCcEEEEc-------eeCCE
Q 024032 181 ---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--S----SPKYVLRRVDFAMVVS-------NIAEI 234 (273)
Q Consensus 181 ---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~----~l~~l~~~~g~tiiiv-------~~ad~ 234 (273)
..||||||||. |+ +++|+|||||||||+||+. . .+..+....++|+|+| +.||+
T Consensus 1348 ydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~ 1427 (1466)
T PTZ00265 1348 YDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDK 1427 (1466)
T ss_pred cCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCE
Confidence 56999999986 55 8999999999999999999 2 2333321137898888 56899
Q ss_pred EEEEeC----CeEe-eecChhhhcc
Q 024032 235 YKALKA----GDSK-PLDATKRLFS 254 (273)
Q Consensus 235 i~vl~~----G~i~-~~g~~~~l~~ 254 (273)
|+||++ |+++ +.|+|+++++
T Consensus 1428 Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1428 IVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred EEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999999 9955 8999999986
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=285.32 Aligned_cols=187 Identities=15% Similarity=0.246 Sum_probs=149.4
Q ss_pred CceEEEEEEEEeecC----CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--
Q 024032 65 GLNELRHKFLSYRSG----DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g----~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-- 137 (273)
.+++++|++++|+.+ ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~v----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~ 78 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLA----LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEE 78 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcce----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccc
Confidence 468999999999642 2346 999999999999999999999999999999999999 99999999998753
Q ss_pred ----CCccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH--
Q 024032 138 ----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ-- 191 (273)
Q Consensus 138 ----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~-- 191 (273)
.++.+++++|++... ++..|+.+|..+ . .+.+.++++.++ .+|||||+||.
T Consensus 79 ~~~~~~~~i~~v~q~~~~~---~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~l 155 (280)
T PRK13633 79 NLWDIRNKAGMVFQNPDNQ---IVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAI 155 (280)
T ss_pred cHHHHhhheEEEecChhhh---hccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHH
Confidence 356799999987431 233467666321 2 233555666655 78999999986
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
|+ +.+|++|||||||+|||+. +.++++.++.|.|||++ ..||++++|++|+++..|++++++...
T Consensus 156 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 235 (280)
T PRK13633 156 AGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKEV 235 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcCh
Confidence 33 7999999999999999999 33555654448999998 348999999999999999999987654
Q ss_pred hh
Q 024032 257 GL 258 (273)
Q Consensus 257 ~l 258 (273)
..
T Consensus 236 ~~ 237 (280)
T PRK13633 236 EM 237 (280)
T ss_pred HH
Confidence 33
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=276.15 Aligned_cols=169 Identities=21% Similarity=0.238 Sum_probs=135.9
Q ss_pred eEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 67 NELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
++++|++++|+.+. +++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~~~~~i----l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 76 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQA----LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKEL 76 (218)
T ss_pred CeEeeeEEEecCCCcceeE----EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHH
Confidence 47899999995422 456 999999999999999999999999999999999999 99999999998753
Q ss_pred ---CCccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ--- 191 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~--- 191 (273)
.++.+++++|++.+ +..+|+.||..+ . .+.+.++++.++ .+||||||||.
T Consensus 77 ~~~~~~~i~~~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 152 (218)
T cd03255 77 AAFRRRHIGFVFQSFNL----LPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIA 152 (218)
T ss_pred HHHHhhcEEEEeecccc----CCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHH
Confidence 13569999998775 344588887321 1 234556666665 67999999987
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeE
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDS 243 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i 243 (273)
|+ +.+|++|||||||++||+. +.++++.++.|.|||++ ..||++++|++|++
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 153 RALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 33 7899999999999999999 33555655348899998 45899999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=285.02 Aligned_cols=184 Identities=18% Similarity=0.214 Sum_probs=148.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
+++++|++++|.. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++.. .
T Consensus 1 ml~~~~l~~~~~~-~~~~----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 75 (274)
T PRK13644 1 MIRLENVSYSYPD-GTPA----LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI 75 (274)
T ss_pred CEEEEEEEEEcCC-CCce----eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHH
Confidence 3789999999952 3446 999999999999999999999999999999999999 99999999998753 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.+++++|++... ++..|+++|..+ + .+.+.++++.++ ..|||||+||. |+ +
T Consensus 76 ~~~i~~v~q~~~~~---~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 76 RKLVGIVFQNPETQ---FVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred HhheEEEEEChhhh---cccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 45799999987531 345688887422 1 223445556555 77999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
.+|++|||||||+|||+. +.++++.++ |.|||++ ..||++++|++|+++..|++++++..+.+
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 228 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSL 228 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcChHH
Confidence 899999999999999999 335555544 8999999 45899999999999999999998776553
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=279.99 Aligned_cols=181 Identities=15% Similarity=0.189 Sum_probs=146.9
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--------
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-------- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-------- 137 (273)
++++|++++|+ ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 74 (252)
T TIGR03005 1 VRFSDVTKRFG--ILTV----LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74 (252)
T ss_pred CEEEEEEEEeC--CeeE----EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccc
Confidence 47899999994 3566 999999999999999999999999999999999999 99999999988742
Q ss_pred ----------CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc---------ccCCHH
Q 024032 138 ----------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS---------SWMSEG 186 (273)
Q Consensus 138 ----------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~---------~~LSgG 186 (273)
.++.+++++|++.+ ++..|+.+|..+ . .+.+.+.++.++ ..||||
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~----~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 75 VPADEKHLRQMRNKIGMVFQSFNL----FPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGG 150 (252)
T ss_pred cccchhHHHHHhhCeEEEecCccc----CCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHH
Confidence 24679999998765 344588887421 1 123455666555 679999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
|+||. |+ +.+|++|||||||++||+. +.++++.++.|.|+|++ .+||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99986 33 7899999999999999999 33555554448899988 4689999999999999999
Q ss_pred hhhhccChh
Q 024032 249 TKRLFSAPG 257 (273)
Q Consensus 249 ~~~l~~~~~ 257 (273)
+++++..+.
T Consensus 231 ~~~~~~~~~ 239 (252)
T TIGR03005 231 PDEIFRQPK 239 (252)
T ss_pred HHHHhcCCC
Confidence 999876543
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=282.96 Aligned_cols=195 Identities=15% Similarity=0.229 Sum_probs=151.9
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
...++++|++++|....+.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~----l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFT----LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEK 80 (269)
T ss_pred CceEEEEEEEEEcCCCCCcc----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 34689999999996432345 999999999999999999999999999999999999 99999999998753
Q ss_pred CCccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
.++.+++++|++..+ ++..|+.+|.. ... +++.++++.++ ..||+||+||. |+
T Consensus 81 ~~~~i~~v~q~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral 157 (269)
T PRK13648 81 LRKHIGIVFQNPDNQ---FVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVL 157 (269)
T ss_pred HHhheeEEEeChHHh---cccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHH
Confidence 346799999997421 33346666521 111 23455666655 67999999986 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChhhHH
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPGLRK 260 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~ 260 (273)
+.+|++|||||||++||+. +.++++.++.|.|||++ ..||++++|++|++++.|+++++...+....
T Consensus 158 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 237 (269)
T PRK13648 158 ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEELT 237 (269)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCHHHHH
Confidence 7999999999999999999 33555554447899888 3489999999999999999999877654444
Q ss_pred HhCCc
Q 024032 261 CSKIS 265 (273)
Q Consensus 261 ~~~~~ 265 (273)
.++.+
T Consensus 238 ~~~~~ 242 (269)
T PRK13648 238 RIGLD 242 (269)
T ss_pred hcCCC
Confidence 44443
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=281.45 Aligned_cols=183 Identities=17% Similarity=0.205 Sum_probs=149.3
Q ss_pred CCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----
Q 024032 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 63 ~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---- 137 (273)
.++.++++|+++.|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 2 ~~~~l~~~~l~~~~~--~~~~----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~ 75 (257)
T PRK10619 2 SENKLNVIDLHKRYG--EHEV----LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDK 75 (257)
T ss_pred CCccEEEeeeEEEEC--CEEE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccc
Confidence 356799999999994 4567 999999999999999999999999999999999999 99999999987631
Q ss_pred --------------CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc----------c
Q 024032 138 --------------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS----------S 181 (273)
Q Consensus 138 --------------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~----------~ 181 (273)
.++.++|++|++.++ ..+|++||..+ . .+++.++++.++ .
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~----~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 151 (257)
T PRK10619 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLW----SHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPV 151 (257)
T ss_pred ccccccccchHHHHHhhceEEEecCcccC----CCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcc
Confidence 245799999998753 34588888421 1 123455666654 5
Q ss_pred cCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 182 WMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 182 ~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
+|||||+||. |+ +++|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 7999999986 33 7899999999999999999 345556554 8999988 46899999999999
Q ss_pred eeecChhhhccCh
Q 024032 244 KPLDATKRLFSAP 256 (273)
Q Consensus 244 ~~~g~~~~l~~~~ 256 (273)
++.|++++++..+
T Consensus 231 ~~~~~~~~~~~~~ 243 (257)
T PRK10619 231 EEEGAPEQLFGNP 243 (257)
T ss_pred EEeCCHHHhhhCc
Confidence 9999999987543
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=279.66 Aligned_cols=180 Identities=16% Similarity=0.230 Sum_probs=146.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
+++++|++++|+ ++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (250)
T PRK11264 3 AIEVKNLVKKFH--GQTV----LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76 (250)
T ss_pred cEEEeceEEEEC--Ceee----eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccch
Confidence 589999999994 4566 999999999999999999999999999999999999 99999999987642
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc---------ccCCHHHHHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS---------SWMSEGVHHN 190 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~---------~~LSgGqkq~ 190 (273)
.++.+++++|++.+ ++..|+.||..+ .. +.+.+.++.++ .+|||||+||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 77 KGLIRQLRQHVGFVFQNFNL----FPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred hhHHHHhhhhEEEEecCccc----CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHH
Confidence 24578999998765 344588887421 11 23445566554 6799999998
Q ss_pred H---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 191 Q---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 191 ~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
. |+ +.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|++++.|+++++
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 6 33 7899999999999999999 334555544 8899888 46899999999999999999998
Q ss_pred ccCh
Q 024032 253 FSAP 256 (273)
Q Consensus 253 ~~~~ 256 (273)
+..+
T Consensus 232 ~~~~ 235 (250)
T PRK11264 232 FADP 235 (250)
T ss_pred hcCC
Confidence 7654
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=296.65 Aligned_cols=170 Identities=18% Similarity=0.268 Sum_probs=142.4
Q ss_pred CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----C----CccEEEEecc
Q 024032 79 GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----S----SHTITMYMEE 148 (273)
Q Consensus 79 g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~----~~~i~~v~q~ 148 (273)
+++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++.. + ++.++|++|+
T Consensus 4 ~~~~~----l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 4 GGKKG----VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred CCcee----EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 45556 999999999999999999999999999999999999 99999999999864 2 5689999999
Q ss_pred chhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcC
Q 024032 149 HNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKN 204 (273)
Q Consensus 149 ~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDE 204 (273)
+.+| +.+||++|..+ + .+++.++++.++ .+||||||||. |+ +.+|++|||||
T Consensus 80 ~~l~----~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 80 FALF----PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CcCC----CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 8864 44599998422 2 234556666665 78999999987 44 79999999999
Q ss_pred cCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 205 DAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 205 Pts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
||++|||. +.+.++.++.|+|||++ ++||+|++|++|++++.|++++++..+
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 99999999 33455655558999999 568999999999999999999998654
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=277.38 Aligned_cols=180 Identities=17% Similarity=0.182 Sum_probs=146.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
.++++|++++|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .+
T Consensus 3 ~l~~~~l~~~~~--~~~~----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 76 (241)
T PRK14250 3 EIEFKEVSYSSF--GKEI----LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76 (241)
T ss_pred eEEEEeEEEEeC--Ceee----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhh
Confidence 478999999984 4566 999999999999999999999999999999999998 99999999998742 35
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-------CHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCC
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-------NYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~ 198 (273)
+.+++++|++.++ ..|+.+|..+ ...++.+.++.++ ..|||||+||. |+ +.+|+
T Consensus 77 ~~i~~~~q~~~~~-----~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 151 (241)
T PRK14250 77 RKIGMVFQQPHLF-----EGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPE 151 (241)
T ss_pred hcEEEEecCchhc-----hhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 6799999997643 3488887432 1234555565554 57999999986 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+|||||||++||+. +.++.+.++.|.|||++ .+||++++|++|+++..|++++++..+
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 223 (241)
T PRK14250 152 VLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNP 223 (241)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCC
Confidence 99999999999999 33555554348899988 468999999999999999999988654
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=276.29 Aligned_cols=175 Identities=18% Similarity=0.205 Sum_probs=140.6
Q ss_pred ceEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC----
Q 024032 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS---- 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~---- 138 (273)
+++++|++++|+.+. .++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+++...
T Consensus 5 ~l~~~~l~~~~~~~~~~~~i----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDV----LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred eEEEEeEEEEcCCCCcceee----EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHH
Confidence 689999999996432 456 999999999999999999999999999999999999 999999999987531
Q ss_pred -----CccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH--
Q 024032 139 -----SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ-- 191 (273)
Q Consensus 139 -----~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~-- 191 (273)
++.++|++|++.+ +..+|+++|..+ . .+++.++++.++ .+||||||||.
T Consensus 81 ~~~~~~~~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~l 156 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHL----LPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAI 156 (233)
T ss_pred HHHHHhccEEEEecCccc----CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence 2569999999765 344588887321 2 123556666665 67999999986
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecC
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~ 248 (273)
|+ +.+|++|||||||++||+. +.++++.++.|.|||++ ..+|++++|++|++++.++
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 157 ARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 33 7899999999999999999 33555554348999999 2357999999999998765
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=287.74 Aligned_cols=177 Identities=15% Similarity=0.151 Sum_probs=147.2
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSH 140 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~ 140 (273)
.++++|++++|. +..+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.++.. .++
T Consensus 2 ~l~~~~l~~~~~--~~~~----l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~ 75 (301)
T TIGR03522 2 SIRVSSLTKLYG--TQNA----LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQR 75 (301)
T ss_pred EEEEEEEEEEEC--CEEE----EEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHh
Confidence 378999999994 4566 999999999999999999999999999999999999 99999999998753 356
Q ss_pred cEEEEeccchhhhccCCccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~ 196 (273)
.++|++|++.+ +..+|+.||.. .+ .+++.++++.++ ..||||||||. ++ +++
T Consensus 76 ~ig~~~q~~~l----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 76 NIGYLPEHNPL----YLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred ceEEecCCCCC----CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 79999999875 44558988832 22 234556666665 67999999986 33 899
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|++|||||||+|||+. +.++++. + +.|||++ .+||++++|++|+++..|+++++..
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999 3345554 3 7899888 5699999999999999999998853
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=291.74 Aligned_cols=185 Identities=15% Similarity=0.170 Sum_probs=146.8
Q ss_pred ceEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-----CccEEEECCeeCCCC
Q 024032 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-----RSGLVLFAQTSSGNS 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-----~~G~I~i~g~~i~~~ 138 (273)
+++++|++++|...+ ..+ |+||||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~----l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~ 78 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRA----VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRI 78 (326)
T ss_pred eEEEeCeEEEECCCCccEEE----EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcC
Confidence 589999999996533 345 999999999999999999999999999999999985 589999999987531
Q ss_pred ---------CccEEEEeccchhhhccCCccccccc----c----cCC----HHHHHHHHHHhc------------ccCCH
Q 024032 139 ---------SHTITMYMEEHNVMRSLQSGFCVYDS----R----GFN----YNRVHEGLEELS------------SWMSE 185 (273)
Q Consensus 139 ---------~~~i~~v~q~~~~~~~~~~~~tv~en----~----~~~----~~~~~~~l~~~~------------~~LSg 185 (273)
++.+++++|++... +...+++.++ . +.. .+.+.++++.++ .+|||
T Consensus 79 ~~~~~~~~r~~~i~~v~Q~~~~~--l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSg 156 (326)
T PRK11022 79 SEKERRNLVGAEVAMIFQDPMTS--LNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSG 156 (326)
T ss_pred CHHHHHHHhCCCEEEEecCchhh--cCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 24699999997421 1223344432 1 112 234556666655 57999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
||+||. |+ +.+|++||+||||++||+. +.++++.++.|.|+|+| .+||+|++|++|+|++.|
T Consensus 157 Gq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g 236 (326)
T PRK11022 157 GMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETG 236 (326)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999987 33 7899999999999999999 44666766568999998 568999999999999999
Q ss_pred ChhhhccCh
Q 024032 248 ATKRLFSAP 256 (273)
Q Consensus 248 ~~~~l~~~~ 256 (273)
+++++++++
T Consensus 237 ~~~~~~~~p 245 (326)
T PRK11022 237 KAHDIFRAP 245 (326)
T ss_pred CHHHHhhCC
Confidence 999998654
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=274.55 Aligned_cols=185 Identities=15% Similarity=0.199 Sum_probs=145.7
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------CC
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------SS 139 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~~ 139 (273)
++++|+++.|+ ++++ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .+
T Consensus 1 l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (230)
T TIGR03410 1 LEVSNLNVYYG--QSHI----LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74 (230)
T ss_pred CEEEeEEEEeC--CeEE----ecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHH
Confidence 47899999984 4566 999999999999999999999999999999999999 99999999998753 24
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-------C-HHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCC
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-------N-YNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~-~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p 197 (273)
+.++|++|++.++ ..+|+.+|..+ . .+...+.++.++ ..|||||+||. |+ +.+|
T Consensus 75 ~~i~~~~q~~~~~----~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 75 AGIAYVPQGREIF----PRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred hCeEEeccCCccc----CCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 5699999998753 34588877321 1 122233444332 67999999986 33 7899
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHHHh
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRKCS 262 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~~~ 262 (273)
+++||||||++||+. +.+.++.++.+.|||++ .+||+++++++|++++.|+++++ ..+.+.+.|
T Consensus 151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~-~~~~~~~~~ 228 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL-DEDKVRRYL 228 (230)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc-ChHHHHHHh
Confidence 999999999999999 33455554347899888 46899999999999999999887 455555554
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=273.64 Aligned_cols=168 Identities=18% Similarity=0.224 Sum_probs=136.1
Q ss_pred EEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--CCccEEE
Q 024032 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN--SSHTITM 144 (273)
Q Consensus 68 ~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~--~~~~i~~ 144 (273)
+++|++++|..+ +++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.++|
T Consensus 1 ~~~~l~~~~~~~-~~~----l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG-TEI----LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc-Cce----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEE
Confidence 468899988532 456 999999999999999999999999999999999999 99999999998742 4567999
Q ss_pred EeccchhhhccCCcccccccccC-------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcC
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGF-------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKN 204 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~-------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDE 204 (273)
++|++... ++..|+.||..+ ..+++.++++.++ ..||||||||. |+ +.+|++|||||
T Consensus 76 ~~q~~~~~---~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 152 (205)
T cd03226 76 VMQDVDYQ---LFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDE 152 (205)
T ss_pred EecChhhh---hhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 99987421 334588888432 1245667777766 67999999986 33 78999999999
Q ss_pred cCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEe
Q 024032 205 DAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSK 244 (273)
Q Consensus 205 Pts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~ 244 (273)
||++||+. +.++++.++ |.|||++ .+||++++|++|+++
T Consensus 153 Pt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 153 PTSGLDYKNMERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999 345555544 8899888 468999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=310.90 Aligned_cols=217 Identities=15% Similarity=0.161 Sum_probs=174.5
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhh-h-c------c-CCCCceEEEEEEEEeecCC-eeeeccceeeeeeEEcC
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERL-A-L------I-APDGLNELRHKFLSYRSGD-FWIPIGGIQKGGMDIPP 97 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~-~------~-~~~~~i~~~~v~~~y~~g~-~~v~~~~L~~is~~i~~ 97 (273)
.+..+......+..+..+.+|+.++++.++. . . . ...+.++++|++|+|+.++ +.+ |+++||++++
T Consensus 290 pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~i----L~~inl~i~~ 365 (576)
T TIGR02204 290 SIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPA----LDGLNLTVRP 365 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCcc----ccceeEEecC
Confidence 4555666667788899999999998865432 1 0 0 0123599999999997533 456 9999999999
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc-----
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG----- 166 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~----- 166 (273)
||.++|+||||||||||+++|+|+++ ++|+|.++|.++.+ +++.+++++|++.+ |..|++||..
T Consensus 366 Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~l-----f~~Ti~~Ni~~~~~~ 440 (576)
T TIGR02204 366 GETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVL-----FAASVMENIRYGRPD 440 (576)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCcc-----ccccHHHHHhcCCCC
Confidence 99999999999999999999999999 99999999998864 45789999999884 5569999843
Q ss_pred CCHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHH
Q 024032 167 FNYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPK 216 (273)
Q Consensus 167 ~~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~ 216 (273)
.+++++.++++.++ ..||||||||. |+ +++|++|||||||++||+. +.++
T Consensus 441 ~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~ 520 (576)
T TIGR02204 441 ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALE 520 (576)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHH
Confidence 34667777766654 46999999986 44 8999999999999999999 2233
Q ss_pred HHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 217 YVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 217 ~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
.+.+ ++|+|+| ..+|++++|++|++++.|+++++.+.
T Consensus 521 ~~~~--~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 521 TLMK--GRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred HHhC--CCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc
Confidence 3432 7899888 45899999999999999999998754
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=285.11 Aligned_cols=183 Identities=15% Similarity=0.135 Sum_probs=146.6
Q ss_pred ceEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----
Q 024032 66 LNELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---- 137 (273)
.++++|++++|..+. +.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~----l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 77 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKG----LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGN 77 (287)
T ss_pred EEEEEEEEEEcCCCCCccccc----eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECcccccc
Confidence 478999999996321 346 999999999999999999999999999999999999 99999999998742
Q ss_pred -----CCccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc----------ccCCHHHHHHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS----------SWMSEGVHHNQ 191 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~----------~~LSgGqkq~~ 191 (273)
.++.++|++|++.. .++.+|+.||..+ . .+.+.++++.++ ..||||||||.
T Consensus 78 ~~~~~~~~~ig~v~q~~~~---~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 78 KNLKKLRKKVSLVFQFPEA---QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred chHHHHHhceEEEEeChhh---hhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHH
Confidence 23579999998732 1334688887421 1 123455555554 57999999986
Q ss_pred ---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 192 ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 192 ---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
|+ +.+|++|||||||+|||+. +.++++.++ |.|||++ .+||++++|++|+++..|++++++
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 33 7899999999999999999 345556544 8999998 568999999999999999999887
Q ss_pred cCh
Q 024032 254 SAP 256 (273)
Q Consensus 254 ~~~ 256 (273)
...
T Consensus 234 ~~~ 236 (287)
T PRK13641 234 SDK 236 (287)
T ss_pred cCH
Confidence 653
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=283.91 Aligned_cols=185 Identities=17% Similarity=0.204 Sum_probs=149.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
+++++|++++|.. +..+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .+
T Consensus 3 ~l~~~~l~~~~~~-~~~~----l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 77 (277)
T PRK13652 3 LIETRDLCYSYSG-SKEA----LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVR 77 (277)
T ss_pred eEEEEEEEEEeCC-CCce----eeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 5889999999953 2346 999999999999999999999999999999999999 99999999998753 34
Q ss_pred ccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~ 195 (273)
+.+++++|++... ++..|+.+|.. .+. +.+.++++.++ ..||||||||. |+ +.
T Consensus 78 ~~i~~v~q~~~~~---~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 78 KFVGLVFQNPDDQ---IFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred hheEEEecCcccc---cccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 5789999987421 33458888742 222 23455566655 67999999986 33 78
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+|++|||||||+|||+. +.++++.++.|.|||++ ..||++++|++|+++..|+++++++.+.+
T Consensus 155 ~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~ 231 (277)
T PRK13652 155 EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDL 231 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCHHH
Confidence 99999999999999999 33555655448899988 56899999999999999999998765543
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=272.98 Aligned_cols=188 Identities=16% Similarity=0.208 Sum_probs=152.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSH 140 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~ 140 (273)
++++.+++++|+. .+ +|++||||+++.|+++||+|||||||||+|++|++++. ++|.|+++|.+... .++
T Consensus 1 Ml~v~~l~K~y~~---~v--~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr 75 (245)
T COG4555 1 MLEVTDLTKSYGS---KV--QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRR 75 (245)
T ss_pred CeeeeehhhhccC---HH--hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhh
Confidence 4789999999964 22 46999999999999999999999999999999999998 99999999998753 678
Q ss_pred cEEEEeccchhhhccCCcccccccc-------cCCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSR-------GFNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~-------~~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~ 196 (273)
+||.++.+..+ +..+|++||. ++.. .++.+..+.++ ..||.|||||+ |+ +++
T Consensus 76 ~IGVl~~e~gl----Y~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~ 151 (245)
T COG4555 76 KIGVLFGERGL----YARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD 151 (245)
T ss_pred hcceecCCcCh----hhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcC
Confidence 89999866665 4556999993 2232 33444444444 78999999986 44 899
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc---ChhhH
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS---APGLR 259 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~---~~~l~ 259 (273)
|++++|||||+|||.. +.++.++++ |++||++ .+||+++++++|+++..|+++++.. ...++
T Consensus 152 P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~e-gr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~~~~~le 230 (245)
T COG4555 152 PSILVLDEPTSGLDIRTRRKFHDFIKQLKNE-GRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNLE 230 (245)
T ss_pred CCeEEEcCCCCCccHHHHHHHHHHHHHhhcC-CcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHHhhcCHH
Confidence 9999999999999999 334555555 9999999 5799999999999999999999864 24566
Q ss_pred HHhC
Q 024032 260 KCSK 263 (273)
Q Consensus 260 ~~~~ 263 (273)
+.|-
T Consensus 231 ~~f~ 234 (245)
T COG4555 231 EIFA 234 (245)
T ss_pred HHHH
Confidence 6554
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=290.29 Aligned_cols=185 Identities=16% Similarity=0.168 Sum_probs=147.0
Q ss_pred ceEEEEEEEEeec--CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-----CccEEEECCeeCCCC
Q 024032 66 LNELRHKFLSYRS--GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-----RSGLVLFAQTSSGNS 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~--g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-----~~G~I~i~g~~i~~~ 138 (273)
+++++|++++|.. +...+ |+++||+|++||++||+|+||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~----l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~ 78 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKA----VDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRL 78 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEE----EeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcC
Confidence 6899999999964 23445 999999999999999999999999999999999984 689999999987531
Q ss_pred ---------CccEEEEeccchhhhccCCcccccccccC-----------------CHHHHHHHHHHhc------------
Q 024032 139 ---------SHTITMYMEEHNVMRSLQSGFCVYDSRGF-----------------NYNRVHEGLEELS------------ 180 (273)
Q Consensus 139 ---------~~~i~~v~q~~~~~~~~~~~~tv~en~~~-----------------~~~~~~~~l~~~~------------ 180 (273)
++.++|++|++... +...+||.++... ..+++.++++.++
T Consensus 79 ~~~~~~~~~~~~i~~v~Q~~~~~--l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p 156 (330)
T PRK15093 79 SPRERRKLVGHNVSMIFQEPQSC--LDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP 156 (330)
T ss_pred CHHHHHHHhCCCEEEEecCcchh--cCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc
Confidence 24699999997631 1233455544210 1234556666655
Q ss_pred ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCe
Q 024032 181 SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGD 242 (273)
Q Consensus 181 ~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~ 242 (273)
.+|||||+||+ ++ +.+|++|||||||++||+. ++++++.++.|.|||+| .+||+|++|++|+
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ 236 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQ 236 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 47999999987 33 7899999999999999999 44566665558999999 5689999999999
Q ss_pred EeeecChhhhccCh
Q 024032 243 SKPLDATKRLFSAP 256 (273)
Q Consensus 243 i~~~g~~~~l~~~~ 256 (273)
|++.|++++++.++
T Consensus 237 ive~g~~~~i~~~p 250 (330)
T PRK15093 237 TVETAPSKELVTTP 250 (330)
T ss_pred EEEECCHHHHHhCC
Confidence 99999999998653
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=284.49 Aligned_cols=181 Identities=15% Similarity=0.222 Sum_probs=150.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----CCc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----SSH 140 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~~~ 140 (273)
.++++|++++|..++..+ |+++||+|++||+++|+||||||||||+++|+|+++++|+|+++|.++.. +++
T Consensus 2 ~i~~~nls~~~~~~~~~~----l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~ 77 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAV----LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRK 77 (275)
T ss_pred eEEEEEEEEEeCCCCCcc----eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhh
Confidence 478999999997555556 99999999999999999999999999999999998888999999998753 467
Q ss_pred cEEEEeccchhhhccCCccccccccc----CCHHHHHHHHHHhc---------c-----------cCCHHHHHHH---Hh
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRG----FNYNRVHEGLEELS---------S-----------WMSEGVHHNQ---RC 193 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~----~~~~~~~~~l~~~~---------~-----------~LSgGqkq~~---r~ 193 (273)
.+++++|++.+| ..|+++|.. ...+++.++++.++ . .||+||+||. |+
T Consensus 78 ~i~~v~q~~~lf-----~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRa 152 (275)
T cd03289 78 AFGVIPQKVFIF-----SGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARS 152 (275)
T ss_pred hEEEECCCcccc-----hhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHH
Confidence 899999998754 348888852 34566777777766 2 3999999986 44
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+++|++|||||||++||+. +.++.+. .++|||+| ..||+|++|++|++++.|+++++++.+.
T Consensus 153 ll~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~ 228 (275)
T cd03289 153 VLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKS 228 (275)
T ss_pred HhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcH
Confidence 8999999999999999999 2233332 27899988 4489999999999999999999987653
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=279.45 Aligned_cols=188 Identities=14% Similarity=0.195 Sum_probs=151.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C---ccEEEECCeeCCC----
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGN---- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~---~G~I~i~g~~i~~---- 137 (273)
+++++|++++|. ++.+ |+++||++++||+++|+||||||||||+++|+|+++ + +|+|.++|.++..
T Consensus 4 ~l~~~nl~~~~~--~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~ 77 (262)
T PRK09984 4 IIRVEKLAKTFN--QHQA----LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL 77 (262)
T ss_pred EEEEeeEEEEeC--CeEE----EecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccccc
Confidence 689999999984 4567 999999999999999999999999999999999987 5 4999999988742
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC----------------C---HHHHHHHHHHhc---------ccC
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF----------------N---YNRVHEGLEELS---------SWM 183 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~----------------~---~~~~~~~l~~~~---------~~L 183 (273)
.++.++|++|++.+ ++.+|+++|..+ . .+++.++++.++ ..|
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 153 (262)
T PRK09984 78 ARDIRKSRANTGYIFQQFNL----VNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTL 153 (262)
T ss_pred chhHHHHHhheEEEcccccc----ccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcccc
Confidence 24568999998765 344588877321 1 123556666665 679
Q ss_pred CHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee
Q 024032 184 SEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 184 SgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~ 245 (273)
|+|||||. |+ +.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|+++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~ 233 (262)
T PRK09984 154 SGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFY 233 (262)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999986 33 7899999999999999999 34566654448899998 5689999999999999
Q ss_pred ecChhhhccChhhHHHhCC
Q 024032 246 LDATKRLFSAPGLRKCSKI 264 (273)
Q Consensus 246 ~g~~~~l~~~~~l~~~~~~ 264 (273)
.|+++++ +++.+.+.|..
T Consensus 234 ~g~~~~~-~~~~~~~~~~~ 251 (262)
T PRK09984 234 DGSSQQF-DNERFDHLYRS 251 (262)
T ss_pred eCCHHHh-ccHHHHHHHhh
Confidence 9999986 55666666653
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=273.64 Aligned_cols=173 Identities=12% Similarity=0.143 Sum_probs=139.6
Q ss_pred ceEEEEEEEEeecCCe--eeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----C
Q 024032 66 LNELRHKFLSYRSGDF--WIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~--~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~ 138 (273)
+++++|++++|+.... ++ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~i----l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 76 (218)
T cd03266 1 MITADALTKRFRDVKKTVQA----VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEA 76 (218)
T ss_pred CeEEEEEEEecCCCCcccee----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHH
Confidence 3689999999953211 56 999999999999999999999999999999999998 99999999998753 3
Q ss_pred CccEEEEeccchhhhccCCccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.+++++|++.+ +...|++||.. .. .+++.++++.++ .+||||||||. |+ +
T Consensus 77 ~~~i~~~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 152 (218)
T cd03266 77 RRRLGFVSDSTGL----YDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALV 152 (218)
T ss_pred HhhEEEecCCccc----CcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHh
Confidence 5679999999864 34458888732 11 234455666665 67999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|++++.|
T Consensus 153 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 153 HDPPVLLLDEPTTGLDVMATRALREFIRQLRAL-GKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 899999999999999999 345556544 8899998 468999999999998653
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=289.31 Aligned_cols=187 Identities=17% Similarity=0.227 Sum_probs=148.3
Q ss_pred CCceEEEEEEEEeecC--CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C---ccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g--~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~---~G~I~i~g~~i~~ 137 (273)
...++++|++++|..+ ...+ |+++||+|++||++||+|+||||||||+++|+|+++ . +|+|.++|+++..
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~----l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTA----VNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILN 85 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEE----EeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCc
Confidence 4579999999999643 2345 999999999999999999999999999999999998 6 9999999998853
Q ss_pred C---------CccEEEEeccchhhhccCCcccccccc--------cCCH----HHHHHHHHHhc------------ccCC
Q 024032 138 S---------SHTITMYMEEHNVMRSLQSGFCVYDSR--------GFNY----NRVHEGLEELS------------SWMS 184 (273)
Q Consensus 138 ~---------~~~i~~v~q~~~~~~~~~~~~tv~en~--------~~~~----~~~~~~l~~~~------------~~LS 184 (273)
. ++.+++++|++... +...+|+.++. +... +++.+.++.++ .+||
T Consensus 86 ~~~~~~~~~r~~~i~~v~Q~~~~~--l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LS 163 (330)
T PRK09473 86 LPEKELNKLRAEQISMIFQDPMTS--LNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFS 163 (330)
T ss_pred CCHHHHHHHhcCCEEEEEcCchhh--cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCC
Confidence 1 24799999998421 12334554431 1222 23445555543 6799
Q ss_pred HHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
|||+||. |+ +.+|++||+||||++||+. +.++++.++.|.|+|+| .+||+|++|++|+|++.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999987 33 7899999999999999999 34566766568999999 46899999999999999
Q ss_pred cChhhhccCh
Q 024032 247 DATKRLFSAP 256 (273)
Q Consensus 247 g~~~~l~~~~ 256 (273)
|+++++++++
T Consensus 244 g~~~~i~~~p 253 (330)
T PRK09473 244 GNARDVFYQP 253 (330)
T ss_pred CCHHHHHhCC
Confidence 9999998654
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=274.91 Aligned_cols=173 Identities=22% Similarity=0.279 Sum_probs=139.2
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc-----c-CccEEEECCeeCCC---
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL-----S-RSGLVLFAQTSSGN--- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~-----~-~~G~I~i~g~~i~~--- 137 (273)
++++|++++|+ ++++ |+++||+|++||+++|+||||||||||+++|+|++ + ++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~--~~~~----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 74 (227)
T cd03260 1 IELRDLNVYYG--DKHA----LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74 (227)
T ss_pred CEEEEEEEEcC--Ccee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch
Confidence 47899999984 4566 99999999999999999999999999999999999 8 99999999998743
Q ss_pred ----CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc-----------ccCCHHHHHH
Q 024032 138 ----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS-----------SWMSEGVHHN 190 (273)
Q Consensus 138 ----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~-----------~~LSgGqkq~ 190 (273)
.++.++|++|++.+ + .+|++||..+ . .+++.++++.++ .+||||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~----~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr 149 (227)
T cd03260 75 DVLELRRRVGMVFQKPNP----F-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQR 149 (227)
T ss_pred HHHHHHhhEEEEecCchh----c-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHH
Confidence 24579999998764 3 5688887321 1 123445555543 4699999998
Q ss_pred H---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 191 Q---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 191 ~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
. |+ +.+|++|||||||++||+. +.++++.++ .|||++ .+||++++|++|++++.|+++++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 6 33 7899999999999999999 335555543 788888 46899999999999999887653
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=280.58 Aligned_cols=183 Identities=18% Similarity=0.221 Sum_probs=146.8
Q ss_pred ceEEEEEEEEeecC-------CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC
Q 024032 66 LNELRHKFLSYRSG-------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g-------~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~ 137 (273)
+++++|++++|..+ ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~i----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 77 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPV----LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQ 77 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEE----eeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccc
Confidence 57899999999632 3556 999999999999999999999999999999999999 99999999998753
Q ss_pred --------CCccEEEEeccchhhhccCCccccccccc--------CC----HHHHHHHHHHhc----------ccCCHHH
Q 024032 138 --------SSHTITMYMEEHNVMRSLQSGFCVYDSRG--------FN----YNRVHEGLEELS----------SWMSEGV 187 (273)
Q Consensus 138 --------~~~~i~~v~q~~~~~~~~~~~~tv~en~~--------~~----~~~~~~~l~~~~----------~~LSgGq 187 (273)
.++.+++++|++... +....|++||.. .. .+++.++++.++ ..|||||
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 78 LDRKQRRAFRRDVQLVFQDSPSA--VNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred cCHHHHHHHhhceEEEecChhhh--cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHH
Confidence 245699999987411 133457777631 11 234455666554 5799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+||. |+ +.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9986 33 7899999999999999999 34556655448899998 46899999999999999999
Q ss_pred hhhcc
Q 024032 250 KRLFS 254 (273)
Q Consensus 250 ~~l~~ 254 (273)
++++.
T Consensus 236 ~~~~~ 240 (265)
T TIGR02769 236 AQLLS 240 (265)
T ss_pred HHHcC
Confidence 99975
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=274.01 Aligned_cols=185 Identities=19% Similarity=0.276 Sum_probs=149.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
+++++|++++|.. . ..++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.
T Consensus 1 ~l~~~~l~~~~~~----~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 72 (232)
T PRK10771 1 MLKLTDITWLYHH----L----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRP 72 (232)
T ss_pred CeEEEEEEEEECC----c----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhcc
Confidence 3789999999952 1 448999999999999999999999999999999999 99999999998753 2457
Q ss_pred EEEEeccchhhhccCCcccccccccC-----------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-----------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-----------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
++|++|++.++ ..+|+.+|..+ ..+++.++++.++ ..|||||+||. |+ +.+|
T Consensus 73 i~~~~q~~~~~----~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 148 (232)
T PRK10771 73 VSMLFQENNLF----SHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQ 148 (232)
T ss_pred EEEEecccccc----cCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999987653 34578877421 1234566666665 67999999986 33 7999
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHHHh
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRKCS 262 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~~~ 262 (273)
++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|++++.|++++++..+.+...|
T Consensus 149 ~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~~~~~~~ 227 (232)
T PRK10771 149 PILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKASASAL 227 (232)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhChhHHHHh
Confidence 999999999999999 33555554447899888 468999999999999999999998777666665
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=283.54 Aligned_cols=179 Identities=19% Similarity=0.258 Sum_probs=144.0
Q ss_pred EEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC--------
Q 024032 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS-------- 138 (273)
Q Consensus 68 ~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~-------- 138 (273)
.++++++.| +++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++...
T Consensus 26 ~~~~~~~~~--~~~~i----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 99 (269)
T cd03294 26 SKEEILKKT--GQTVG----VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99 (269)
T ss_pred hhhhhhhhc--CCceE----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhh
Confidence 355677776 45667 999999999999999999999999999999999999 999999999987531
Q ss_pred -CccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 139 -SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 139 -~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
++.+++++|++.+ ++.+|+.+|..+ . .+.+.+.++.++ .+||||||||. |+
T Consensus 100 ~~~~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 100 RRKKISMVFQSFAL----LPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred hcCcEEEEecCccc----CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 3569999998765 345588887421 1 123455666655 67999999987 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+.+|++|||||||+|||+. +.++++.++.|.|||++ .+||++++|++|++++.|+++++++.+
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 7999999999999999999 33555654447899888 568999999999999999999987644
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=278.63 Aligned_cols=182 Identities=19% Similarity=0.239 Sum_probs=145.8
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-----ccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-----~G~I~i~g~~i~~ 137 (273)
+.++++++++++|. +.++ |+++||+|++||+++|+||||||||||+++|+|+++ + +|+|+++|+++..
T Consensus 5 ~~~l~~~~l~~~~~--~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (254)
T PRK14273 5 EAIIETENLNLFYT--DFKA----LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS 78 (254)
T ss_pred CceEEEeeeEEEeC--Ccee----ecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccc
Confidence 45799999999994 3556 999999999999999999999999999999999987 4 8999999988631
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc-------------ccCCH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS-------------SWMSE 185 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~-------------~~LSg 185 (273)
.++.++|++|++..+ ..|++||..+ . .+.+.++++.++ ..|||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~-----~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg 153 (254)
T PRK14273 79 NNFDILELRRKIGMVFQTPNPF-----LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSG 153 (254)
T ss_pred ccccHHHHhhceEEEeeccccc-----cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCH
Confidence 356799999997642 3588887321 1 123344444332 67999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
|||||. |+ +.+|++|||||||++||+. +.++++. + +.|||++ .+||++++|++|+++..|
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g 231 (254)
T PRK14273 154 GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEES 231 (254)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999986 33 7899999999999999999 3455664 3 6888888 568999999999999999
Q ss_pred ChhhhccChhh
Q 024032 248 ATKRLFSAPGL 258 (273)
Q Consensus 248 ~~~~l~~~~~l 258 (273)
+++++++++..
T Consensus 232 ~~~~~~~~~~~ 242 (254)
T PRK14273 232 STDELFFNPKN 242 (254)
T ss_pred CHHHHHhCCCC
Confidence 99999865443
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=276.62 Aligned_cols=180 Identities=16% Similarity=0.209 Sum_probs=144.7
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSH 140 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~ 140 (273)
+++++++++|+.. +.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++
T Consensus 1 l~~~~l~~~~~~~-~~~----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (242)
T cd03295 1 IEFENVTKRYGGG-KKA----VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR 75 (242)
T ss_pred CEEEEEEEEeCCc-ceE----eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhc
Confidence 4689999998531 456 999999999999999999999999999999999999 99999999998753 345
Q ss_pred cEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc-----------ccCCHHHHHHH---Hh-c
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS-----------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~-----------~~LSgGqkq~~---r~-l 194 (273)
.++|++|++.+ +...|++||..+ + .+.+.++++.++ .+|||||+||. |+ +
T Consensus 76 ~i~~~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 76 KIGYVIQQIGL----FPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred ceEEEccCccc----cCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 78999998765 344588887321 1 123445555443 56999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|++++.|+++++...
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999 33455554347898888 56899999999999999999888654
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=296.42 Aligned_cols=166 Identities=20% Similarity=0.338 Sum_probs=137.6
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC---------CccEEEEeccchhhhccC
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS---------SHTITMYMEEHNVMRSLQ 156 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~---------~~~i~~v~q~~~~~~~~~ 156 (273)
+|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++... ++.++|++|++.++
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~---- 118 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM---- 118 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC----
Confidence 4999999999999999999999999999999999999 999999999987531 35799999998753
Q ss_pred Cccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH
Q 024032 157 SGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK 212 (273)
Q Consensus 157 ~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~ 212 (273)
+.+|+.||.. .. .+++.++++.++ .+||||||||. |+ +.+|++|||||||++||+.
T Consensus 119 ~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~ 198 (400)
T PRK10070 119 PHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPL 198 (400)
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence 4458998842 12 234556677665 67999999987 33 7899999999999999999
Q ss_pred ------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 213 ------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 213 ------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+.++++.++.|+|||++ ++||++++|++|+++..|++++++..+
T Consensus 199 ~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~ 256 (400)
T PRK10070 199 IRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256 (400)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCc
Confidence 33555554448899888 568999999999999999999987654
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=336.93 Aligned_cols=216 Identities=16% Similarity=0.144 Sum_probs=174.0
Q ss_pred hhhhhccchhhhhhhhHHHHHHHhc-hhhh-------------------------------c----c--CCCCceEEEEE
Q 024032 31 ECVKLKLDLPNVSTLTPRLRVLREM-ERLA-------------------------------L----I--APDGLNELRHK 72 (273)
Q Consensus 31 ~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~-------------------------------~----~--~~~~~i~~~~v 72 (273)
.+.....+++.+..+.+|+.++.+. +.+. . + ...+.|+|+||
T Consensus 1235 ~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nV 1314 (1560)
T PTZ00243 1235 WLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGV 1314 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEE
Confidence 3344446677888899999988752 1110 0 0 01246999999
Q ss_pred EEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEe
Q 024032 73 FLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYM 146 (273)
Q Consensus 73 ~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~ 146 (273)
+|+|+.+..++ |+|+||+|++||.+||||+||||||||+++|.|+++ ++|+|.+||.++.+ +|+.+++++
T Consensus 1315 sf~Y~~~~~~v----L~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVp 1390 (1560)
T PTZ00243 1315 QMRYREGLPLV----LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIP 1390 (1560)
T ss_pred EEEeCCCCCce----eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEEC
Confidence 99997655557 999999999999999999999999999999999999 99999999999864 678999999
Q ss_pred ccchhhhccCCccccccccc----CCHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCC-C
Q 024032 147 EEHNVMRSLQSGFCVYDSRG----FNYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRS-D 197 (273)
Q Consensus 147 q~~~~~~~~~~~~tv~en~~----~~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~-p 197 (273)
|++.+ |..||++|.. .+++++.++++.++ .+||||||||. |+ +++ |
T Consensus 1391 Qdp~L-----F~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~ 1465 (1560)
T PTZ00243 1391 QDPVL-----FDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGS 1465 (1560)
T ss_pred CCCcc-----ccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99984 4569999943 46788888888765 47999999986 55 675 8
Q ss_pred CEEEEcCcCCCCCHH--HHHHH-HHh-cCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 198 DCALMKNDAEIDDLK--SSPKY-VLR-RVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 198 ~iLlLDEPts~LD~~--~~l~~-l~~-~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
+|||||||||+||+. ..+.+ +.+ ..++|+|+| ..||+|+||++|+|++.|+|++++++
T Consensus 1466 ~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1466 GFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999 33332 222 127899988 55899999999999999999999863
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=278.48 Aligned_cols=174 Identities=14% Similarity=0.162 Sum_probs=141.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
+++++|+++.|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++......+++
T Consensus 1 ml~~~~l~~~~~--~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 74 (255)
T PRK11248 1 MLQISHLYADYG--GKPA----LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGV 74 (255)
T ss_pred CEEEEEEEEEeC--Ceee----EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEE
Confidence 378999999984 4566 999999999999999999999999999999999999 999999999988655556899
Q ss_pred EeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
++|++.+ +...|+.+|..+ . .+.+.+.++.++ ..||||||||. |+ +.+|++|
T Consensus 75 v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~ll 150 (255)
T PRK11248 75 VFQNEGL----LPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLL 150 (255)
T ss_pred EeCCCcc----CCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9998765 334588887321 1 123556666665 67999999986 33 7899999
Q ss_pred EEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEe--CCeEeeecCh
Q 024032 201 LMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALK--AGDSKPLDAT 249 (273)
Q Consensus 201 lLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~--~G~i~~~g~~ 249 (273)
||||||++||+. +.++++.++.|.|||++ .+||++++|+ +|++++.++.
T Consensus 151 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 151 LLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999 33555544348899988 5689999998 5999987654
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=270.81 Aligned_cols=170 Identities=16% Similarity=0.212 Sum_probs=137.9
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-CCccEEE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-SSHTITM 144 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-~~~~i~~ 144 (273)
++++|+++.|. ++.+ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.+++
T Consensus 1 l~~~~l~~~~~--~~~~----l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFG--RVTA----LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGY 74 (210)
T ss_pred CEEEEEEEEEC--CEEE----EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEE
Confidence 47899999984 4567 999999999999999999999999999999999998 99999999988753 4567999
Q ss_pred EeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
++|++.+ +...|+.||..+ . .+.+.+.++.++ .+||||||||. ++ +.+|++|
T Consensus 75 ~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~l 150 (210)
T cd03269 75 LPEERGL----YPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELL 150 (210)
T ss_pred eccCCcC----CcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999865 344588887321 1 223455666655 67999999986 33 7899999
Q ss_pred EEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 201 LMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 201 lLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
||||||++||+. +.++++.++ +.|||++ .+||++++|++|++++.|
T Consensus 151 llDEP~~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 151 ILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999 345555544 7899988 468999999999998653
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=281.99 Aligned_cols=193 Identities=14% Similarity=0.128 Sum_probs=149.4
Q ss_pred CceEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC----
Q 024032 65 GLNELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG---- 136 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~---- 136 (273)
+.++++|++++|+... ..+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.++.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~i----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 80 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKA----LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLK 80 (289)
T ss_pred ceEEEEEEEEEeCCCCccccce----eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccc
Confidence 4689999999995321 235 999999999999999999999999999999999999 9999999998763
Q ss_pred ------CCCccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc----------ccCCHHHHH
Q 024032 137 ------NSSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS----------SWMSEGVHH 189 (273)
Q Consensus 137 ------~~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~----------~~LSgGqkq 189 (273)
..++.++|++|++... ++..|+.+|.. ... +.+.+.++.++ ..|||||||
T Consensus 81 ~~~~~~~~~~~i~~v~q~~~~~---~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQFPEYQ---LFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKR 157 (289)
T ss_pred ccccHHHHhccEEEEEeCcchh---hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHH
Confidence 1345799999986421 23347877732 111 22334444433 679999999
Q ss_pred HH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhh
Q 024032 190 NQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKR 251 (273)
Q Consensus 190 ~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~ 251 (273)
|. |+ +.+|++|||||||+|||+. +.++++.++.|+|||++ .+||++++|++|++++.|++++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 86 33 7899999999999999999 33455554448899988 5689999999999999999999
Q ss_pred hccChhhHHHhCC
Q 024032 252 LFSAPGLRKCSKI 264 (273)
Q Consensus 252 l~~~~~l~~~~~~ 264 (273)
++..+.+...++.
T Consensus 238 ~~~~~~~~~~~~~ 250 (289)
T PRK13645 238 IFSNQELLTKIEI 250 (289)
T ss_pred HhcCHHHHHHcCC
Confidence 8776655444443
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=288.39 Aligned_cols=167 Identities=14% Similarity=0.189 Sum_probs=138.6
Q ss_pred CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCccEEEEeccchhhh
Q 024032 79 GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHTITMYMEEHNVMR 153 (273)
Q Consensus 79 g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~i~~v~q~~~~~~ 153 (273)
+++++ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|.++.. .++.+++++|++.+
T Consensus 4 ~~~~~----l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~-- 77 (302)
T TIGR01188 4 GDFKA----VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASV-- 77 (302)
T ss_pred CCeeE----EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCC--
Confidence 45566 999999999999999999999999999999999999 99999999998753 35679999998775
Q ss_pred ccCCccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCC
Q 024032 154 SLQSGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEID 209 (273)
Q Consensus 154 ~~~~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~L 209 (273)
+..+|++||.. .. .+++.++++.++ .+||||||||. ++ +++|++|||||||+||
T Consensus 78 --~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 78 --DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred --CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 44558888732 12 224556677665 67999999986 33 7999999999999999
Q ss_pred CHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 210 DLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 210 D~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
||. +.++++.++ |.|||++ .+||++++|++|+++..|+++++..
T Consensus 156 D~~~~~~l~~~l~~~~~~-g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 156 DPRTRRAIWDYIRALKEE-GVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999 345666555 8999998 5689999999999999999988753
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=271.94 Aligned_cols=171 Identities=20% Similarity=0.236 Sum_probs=136.4
Q ss_pred ceEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC----
Q 024032 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS---- 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~---- 138 (273)
.++++|++++|..+. +++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~----l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~ 76 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRV----LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76 (221)
T ss_pred CEEEEeeeEEccCCCcceEe----EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhH
Confidence 368999999995422 456 999999999999999999999999999999999999 999999999987531
Q ss_pred ----C-ccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH--
Q 024032 139 ----S-HTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ-- 191 (273)
Q Consensus 139 ----~-~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~-- 191 (273)
+ +.++|++|++.+ +...|++||..+ . .+.+.++++.++ ..||||||||.
T Consensus 77 ~~~~~~~~i~~v~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 152 (221)
T TIGR02211 77 RAKLRNKKLGFIYQFHHL----LPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAI 152 (221)
T ss_pred HHHHHHhcEEEEeccccc----CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 2 569999998765 334588887421 1 123455666555 67999999987
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEe
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSK 244 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~ 244 (273)
|+ +.+|++|||||||++||+. +.++++.++.+.|||++ ..+|++++|++|+++
T Consensus 153 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 153 ARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 33 7899999999999999999 33555554447899988 347999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=277.04 Aligned_cols=184 Identities=16% Similarity=0.254 Sum_probs=145.7
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
+..++++|++++|. ++.+ |+++||+|++||+++|+||||||||||+++|+|++. ++|+|.++|+++..
T Consensus 4 ~~~l~~~~l~~~~~--~~~i----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 77 (253)
T PRK14242 4 PPKMEARGLSFFYG--DFQA----LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD 77 (253)
T ss_pred CcEEEEeeeEEEEC--Ceee----ecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccc
Confidence 34799999999994 4556 999999999999999999999999999999999862 68999999998742
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc-------------ccCCH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS-------------SWMSE 185 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~-------------~~LSg 185 (273)
.++.++|++|++.++ ..|+.||..+ . .+++.++++.++ ..|||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 152 (253)
T PRK14242 78 PHVDVVELRRRVGMVFQKPNPF-----PKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSG 152 (253)
T ss_pred cccCHHHHhhcEEEEecCCCCC-----cCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCH
Confidence 246799999987643 2478887321 1 123444444432 56999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
|||||. |+ +.+|++|||||||++||+. +.++++. + +.|||++ .+||++++|++|++++.|
T Consensus 153 Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g 230 (253)
T PRK14242 153 GQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVG 230 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeC
Confidence 999987 33 7899999999999999999 3355553 3 7898888 568999999999999999
Q ss_pred ChhhhccChhhHH
Q 024032 248 ATKRLFSAPGLRK 260 (273)
Q Consensus 248 ~~~~l~~~~~l~~ 260 (273)
+++++++.+....
T Consensus 231 ~~~~~~~~~~~~~ 243 (253)
T PRK14242 231 PTEQIFTRPREKQ 243 (253)
T ss_pred CHHHHHcCCCchH
Confidence 9999987655443
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=307.25 Aligned_cols=216 Identities=14% Similarity=0.175 Sum_probs=169.0
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchhhh--------ccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcE
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMERLA--------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVIT 100 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~ 100 (273)
+..+......+..+..+.+|+.++++.++.. .....+.++++|++|+|+. ++++ |+++||++++|++
T Consensus 289 ~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~-~~~~----l~~i~~~i~~G~~ 363 (585)
T TIGR01192 289 LDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFAN-SSQG----VFDVSFEAKAGQT 363 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCC-CCcc----ccceeEEEcCCCE
Confidence 3445555566677888889988887654221 0111246999999999963 2456 9999999999999
Q ss_pred EEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc-----CCH
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-----FNY 169 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-----~~~ 169 (273)
+||+||||||||||+++|+|+++ ++|+|.++|.++.+ +++.+++++|++.+ +..|++||.. .+.
T Consensus 364 ~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l-----f~~ti~~Ni~~~~~~~~~ 438 (585)
T TIGR01192 364 VAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGL-----FNRSIRENIRLGREGATD 438 (585)
T ss_pred EEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCcc-----CcccHHHHHhcCCCCCCH
Confidence 99999999999999999999999 99999999998764 56789999999874 4468999842 345
Q ss_pred HHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHH
Q 024032 170 NRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVL 219 (273)
Q Consensus 170 ~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~ 219 (273)
+++.++++.++ ..||||||||. |+ +++|++|||||||++||+. +.+.++.
T Consensus 439 ~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~ 518 (585)
T TIGR01192 439 EEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR 518 (585)
T ss_pred HHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh
Confidence 55555544332 56999999986 44 8999999999999999999 2233332
Q ss_pred hcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 220 RRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 220 ~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+ ++|+|++ ..||+|++|++|++++.|+++++.++.
T Consensus 519 -~-~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 560 (585)
T TIGR01192 519 -K-NRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKD 560 (585)
T ss_pred -C-CCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCC
Confidence 2 7899888 458999999999999999999997543
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=271.82 Aligned_cols=167 Identities=21% Similarity=0.297 Sum_probs=134.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
+++++|++++|. +++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~-~~~~i----l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (214)
T TIGR02673 1 MIEFHNVSKAYP-GGVAA----LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLP 75 (214)
T ss_pred CEEEEeeeEEeC-CCcee----ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 378999999995 23456 999999999999999999999999999999999999 99999999998753
Q ss_pred -CCccEEEEeccchhhhccCCccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
.++.+++++|++.++ ...|+.+|.. .. .+++.++++.++ ..|||||+||. |+
T Consensus 76 ~~~~~i~~~~q~~~~~----~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (214)
T TIGR02673 76 LLRRRIGVVFQDFRLL----PDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARA 151 (214)
T ss_pred HHHhheEEEecChhhc----cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 245799999988753 3458888732 11 234455666655 67999999986 33
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCe
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGD 242 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~ 242 (273)
+.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+
T Consensus 152 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 152 IVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKR-GTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 7899999999999999999 335555544 8899988 4689999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=276.71 Aligned_cols=179 Identities=21% Similarity=0.261 Sum_probs=144.2
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-----ccEEEECCeeCC--C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSG--N 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-----~G~I~i~g~~i~--~ 137 (273)
.++++|++++|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ + +|+|.++|+++. .
T Consensus 4 ~l~~~~l~~~~~--~~~~----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (253)
T PRK14267 4 AIETVNLRVYYG--SNHV----IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77 (253)
T ss_pred eEEEEeEEEEeC--Ceee----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 689999999984 3556 999999999999999999999999999999999987 4 999999999874 1
Q ss_pred -----CCccEEEEeccchhhhccCCcccccccccC---------CH----HHHHHHHHHhc-------------ccCCHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF---------NY----NRVHEGLEELS-------------SWMSEG 186 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~---------~~----~~~~~~l~~~~-------------~~LSgG 186 (273)
.++.+++++|++.++ ...|+.+|..+ .. +.+.++++.++ ..||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~----~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 153 (253)
T PRK14267 78 VDPIEVRREVGMVFQYPNPF----PHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGG 153 (253)
T ss_pred cChHHHhhceeEEecCCccC----CCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHH
Confidence 346799999997753 34588887321 11 23444555432 569999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
||||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99986 33 7899999999999999999 33455543 6888888 4689999999999999999
Q ss_pred hhhhccCh
Q 024032 249 TKRLFSAP 256 (273)
Q Consensus 249 ~~~l~~~~ 256 (273)
+++++..+
T Consensus 232 ~~~~~~~~ 239 (253)
T PRK14267 232 TRKVFENP 239 (253)
T ss_pred HHHHHhCC
Confidence 99987553
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=279.74 Aligned_cols=183 Identities=16% Similarity=0.141 Sum_probs=145.0
Q ss_pred eEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 67 NELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
++++|++++|..+. +++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRA----LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK 78 (280)
T ss_pred EEEEEEEEEcCCCCccccce----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccc
Confidence 78999999996321 345 999999999999999999999999999999999999 99999999998742
Q ss_pred ----CCccEEEEeccchhhhccCCccccccccc-------CCHH----HHHHHHHHhc----------ccCCHHHHHHH-
Q 024032 138 ----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNYN----RVHEGLEELS----------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 ----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~~----~~~~~l~~~~----------~~LSgGqkq~~- 191 (273)
.++.++|++|++... ++..|+++|.. ...+ .+.++++.++ .+||||||||.
T Consensus 79 ~~~~~~~~i~~~~q~~~~~---~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQ---LFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred CHHHHHhheEEEeeChhhh---hccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 245699999986311 23458888732 1222 2344455543 57999999986
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|+ +.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+++..|++++++.
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 33 7899999999999999999 335556554 8899998 4689999999999999999998876
Q ss_pred Chh
Q 024032 255 APG 257 (273)
Q Consensus 255 ~~~ 257 (273)
...
T Consensus 235 ~~~ 237 (280)
T PRK13649 235 DVD 237 (280)
T ss_pred CHH
Confidence 543
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=269.45 Aligned_cols=182 Identities=16% Similarity=0.208 Sum_probs=147.0
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC-CccEEE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS-SHTITM 144 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~-~~~i~~ 144 (273)
++++|++++|. ++.+ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|.++... ++.+++
T Consensus 1 l~l~~v~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFG--KQTA----VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGS 74 (223)
T ss_pred CEEEeEEEEEC--CEEE----EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEE
Confidence 47899999884 4567 999999999999999999999999999999999999 999999999887532 357899
Q ss_pred EeccchhhhccCCcccccccc-------cCCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcC
Q 024032 145 YMEEHNVMRSLQSGFCVYDSR-------GFNYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKN 204 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~-------~~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDE 204 (273)
++|++.. +...|+++|. +.....+.++++.++ ..||+||+||. |+ +.+|++|||||
T Consensus 75 ~~q~~~~----~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDE 150 (223)
T TIGR03740 75 LIESPPL----YENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDE 150 (223)
T ss_pred EcCCCCc----cccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 9998765 3445888873 223456667777765 67999999986 33 78999999999
Q ss_pred cCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHHHh
Q 024032 205 DAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRKCS 262 (273)
Q Consensus 205 Pts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~~~ 262 (273)
||++||+. +.++++.++ |.|||++ .+||++++|++|+++..|++.+ .+.+++.|
T Consensus 151 P~~~LD~~~~~~l~~~L~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~---~~~~~~~~ 218 (223)
T TIGR03740 151 PTNGLDPIGIQELRELIRSFPEQ-GITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK---SENLEKLF 218 (223)
T ss_pred CccCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh---cccHHHHH
Confidence 99999999 345555544 8898888 5689999999999999998764 33445544
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=282.11 Aligned_cols=189 Identities=19% Similarity=0.202 Sum_probs=151.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~-- 137 (273)
+++++|++.+|...+..+ .+++||||+|++||++||||.|||||||+.+.|.|+++ .+|+|.|+|+++..
T Consensus 1 lL~v~nL~v~f~~~~g~v--~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~ 78 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVV--KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78 (316)
T ss_pred CceEeeeEEEEecCCccE--EEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCC
Confidence 368999999998654444 45999999999999999999999999999999999985 36899999997742
Q ss_pred -------CCccEEEEeccchhhhccCCccccccc--------ccC-C----HHHHHHHHHHhc------------ccCCH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDS--------RGF-N----YNRVHEGLEELS------------SWMSE 185 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en--------~~~-~----~~~~~~~l~~~~------------~~LSg 185 (273)
..+.|+++||++..- +.+-+||.+- ... . .+++.+.++.++ .+|||
T Consensus 79 ~~~~~~iRG~~I~mIfQ~p~~s--LnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSG 156 (316)
T COG0444 79 EKELRKIRGKEIAMIFQDPMTS--LNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSG 156 (316)
T ss_pred HHHHHhhcCceEEEEEcCchhh--cCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCC
Confidence 236799999997632 1222344321 111 1 234556666666 88999
Q ss_pred HHHHHHH----hcCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQR----CLRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~r----~l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
||+||+. ++.+|++||.||||++||.. ++++++.++.|.|+|+| .+||||+||..|+|++.|
T Consensus 157 GMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g 236 (316)
T COG0444 157 GMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEG 236 (316)
T ss_pred cHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeC
Confidence 9999872 27899999999999999999 45778888789999999 678999999999999999
Q ss_pred ChhhhccChhh
Q 024032 248 ATKRLFSAPGL 258 (273)
Q Consensus 248 ~~~~l~~~~~l 258 (273)
++++++.+|..
T Consensus 237 ~~~~i~~~P~H 247 (316)
T COG0444 237 PVEEIFKNPKH 247 (316)
T ss_pred CHHHHhcCCCC
Confidence 99999987653
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=273.78 Aligned_cols=179 Identities=17% Similarity=0.235 Sum_probs=142.6
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSH 140 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~ 140 (273)
++++|+++.|..+++++ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++
T Consensus 1 i~~~~l~~~~~~~~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (237)
T cd03252 1 ITFEHVRFRYKPDGPVI----LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76 (237)
T ss_pred CEEEEEEEecCCCCccc----eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhh
Confidence 47899999996544556 999999999999999999999999999999999999 99999999988742 356
Q ss_pred cEEEEeccchhhhccCCcccccccccC-----CHHHHHH---------HHHHh-----------cccCCHHHHHHH---H
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHE---------GLEEL-----------SSWMSEGVHHNQ---R 192 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~---------~l~~~-----------~~~LSgGqkq~~---r 192 (273)
.+++++|++.+ +..|+.+|..+ ....+.+ .++.+ ..+||||||||. |
T Consensus 77 ~i~~~~q~~~~-----~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 151 (237)
T cd03252 77 QVGVVLQENVL-----FNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIAR 151 (237)
T ss_pred cEEEEcCCchh-----ccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHH
Confidence 79999998764 23588887432 2222222 22222 168999999987 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+ +.+|++|||||||++||+. +.++++. + |.|||++ ..||++++|++|+++..|++++++...
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (237)
T cd03252 152 ALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAEN 227 (237)
T ss_pred HHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhcc
Confidence 3 7899999999999999999 3345554 3 8899888 448999999999999999999987654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=278.16 Aligned_cols=178 Identities=16% Similarity=0.227 Sum_probs=151.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-CCccEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-SSHTIT 143 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-~~~~i~ 143 (273)
.+++++|+++| |++.+ ++|+||++++|+++|++|||||||||++++|.|++. ++|.|.++|.+++. .+.+||
T Consensus 2 ~L~ie~vtK~F--g~k~a----v~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSF--GDKKA----VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG 75 (300)
T ss_pred ceEEecchhcc--Cceee----ecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcc
Confidence 47899999998 66777 999999999999999999999999999999999999 99999999999874 667899
Q ss_pred EEeccchhhhccCCccccccc-------ccCCHHH----HHHHHHHhc---------ccCCHHHHHHHH----hcCCCCE
Q 024032 144 MYMEEHNVMRSLQSGFCVYDS-------RGFNYNR----VHEGLEELS---------SWMSEGVHHNQR----CLRSDDC 199 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en-------~~~~~~~----~~~~l~~~~---------~~LSgGqkq~~r----~l~~p~i 199 (273)
|.|.+..+++ .+||.|. .+++.++ +..+++++. .+||.|++|+.. ++++|++
T Consensus 76 yLPEERGLy~----k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 76 YLPEERGLYP----KMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred cChhhhccCc----cCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 9999888754 4588885 3455544 445666655 789999999863 3899999
Q ss_pred EEEcCcCCCCCHH--HH----HHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 200 ALMKNDAEIDDLK--SS----PKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 200 LlLDEPts~LD~~--~~----l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
+|||||+|||||. ++ +.+++.+ |.|||++ .+||++++|++|+.|.+|+.+++.+
T Consensus 152 lILDEPFSGLDPVN~elLk~~I~~lk~~-GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 152 LILDEPFSGLDPVNVELLKDAIFELKEE-GATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHhc-CCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 9999999999999 33 4556655 9999999 6799999999999999999988753
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=279.29 Aligned_cols=186 Identities=15% Similarity=0.230 Sum_probs=145.5
Q ss_pred CceEEEEEEEEeecC-------CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 65 GLNELRHKFLSYRSG-------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g-------~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
.+++++|++++|.+. +.++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~----l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 78 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEA----VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLH 78 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccce----eeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECC
Confidence 368999999999531 2346 999999999999999999999999999999999999 9999999999875
Q ss_pred C-----CCccEEEEeccchhhhccCCcccccccc--------cCC----HHHHHHHHHHhc----------ccCCHHHHH
Q 024032 137 N-----SSHTITMYMEEHNVMRSLQSGFCVYDSR--------GFN----YNRVHEGLEELS----------SWMSEGVHH 189 (273)
Q Consensus 137 ~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~--------~~~----~~~~~~~l~~~~----------~~LSgGqkq 189 (273)
. .++.+++++|++..+ +....|+.++. ... .+.+.++++.++ .+|||||+|
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 156 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTS--LNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQ 156 (267)
T ss_pred CCchhhHhccEEEEecCchhh--cCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHH
Confidence 2 235699999987421 12223444431 111 234555666654 569999999
Q ss_pred HH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhh
Q 024032 190 NQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKR 251 (273)
Q Consensus 190 ~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~ 251 (273)
|. ++ +.+|++|||||||++||+. +.+.++.++.|.|||++ .+||++++|++|+++..|++++
T Consensus 157 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 236 (267)
T PRK15112 157 RLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTAD 236 (267)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 86 33 7899999999999999999 33555554448899888 4689999999999999999999
Q ss_pred hccCh
Q 024032 252 LFSAP 256 (273)
Q Consensus 252 l~~~~ 256 (273)
+.+.+
T Consensus 237 ~~~~~ 241 (267)
T PRK15112 237 VLASP 241 (267)
T ss_pred HhcCC
Confidence 87653
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=276.92 Aligned_cols=183 Identities=17% Similarity=0.260 Sum_probs=146.4
Q ss_pred CCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCC
Q 024032 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (273)
Q Consensus 63 ~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~ 136 (273)
+...++++|++++|+ +.++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 10 ~~~~l~~~~l~~~~~--~~~i----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~ 83 (260)
T PRK10744 10 APSKIQVRNLNFYYG--KFHA----LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL 83 (260)
T ss_pred CCceEEEEEEEEEeC--CeEE----eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcc
Confidence 456899999999994 4566 999999999999999999999999999999999974 6899999998874
Q ss_pred C-------CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCC
Q 024032 137 N-------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMS 184 (273)
Q Consensus 137 ~-------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LS 184 (273)
. .++.++|++|++.++ ..|+++|..+ +. +++.++++.++ .+||
T Consensus 84 ~~~~~~~~~~~~i~~~~q~~~~~-----~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 158 (260)
T PRK10744 84 TPKQDIALLRAKVGMVFQKPTPF-----PMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLS 158 (260)
T ss_pred ccccchHHHhcceEEEecCCccC-----cCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCC
Confidence 1 356799999997643 2588887321 11 23445555442 5699
Q ss_pred HHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
|||+||. |+ +.+|++|||||||++||+. +.++++. + +.|||++ .+||++++|++|++++.
T Consensus 159 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQQAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999986 33 7899999999999999999 3345554 3 6788888 46899999999999999
Q ss_pred cChhhhccChhh
Q 024032 247 DATKRLFSAPGL 258 (273)
Q Consensus 247 g~~~~l~~~~~l 258 (273)
|++++++..+..
T Consensus 237 g~~~~~~~~~~~ 248 (260)
T PRK10744 237 GNTDTIFTKPAK 248 (260)
T ss_pred CCHHHHHhCCCc
Confidence 999998865443
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=274.94 Aligned_cols=177 Identities=19% Similarity=0.189 Sum_probs=143.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC--------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG-------- 136 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~-------- 136 (273)
.++++|+++.|. ++.+ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 2 ~l~~~~l~~~~~--~~~i----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T PRK11124 2 SIQLNGINCFYG--AHQA----LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred EEEEEeeEEEEC--Ceee----EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchh
Confidence 478999999984 4566 999999999999999999999999999999999999 9999999999762
Q ss_pred ---CCCccEEEEeccchhhhccCCccccccccc--------CC----HHHHHHHHHHhc---------ccCCHHHHHHH-
Q 024032 137 ---NSSHTITMYMEEHNVMRSLQSGFCVYDSRG--------FN----YNRVHEGLEELS---------SWMSEGVHHNQ- 191 (273)
Q Consensus 137 ---~~~~~i~~v~q~~~~~~~~~~~~tv~en~~--------~~----~~~~~~~l~~~~---------~~LSgGqkq~~- 191 (273)
..++.++|++|++.+ +..+|+.||.. .. .+.+.+.++.++ ..||||||||.
T Consensus 76 ~~~~~~~~i~~~~q~~~~----~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 76 AIRELRRNVGMVFQQYNL----WPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred hHHHHHhheEEEecCccc----cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 124579999998875 34458888742 11 123445555554 67999999986
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
|+ +.+|++|||||||++||+. +.++++.++ |.|+|++ ..||++++|++|+++..|+++++.
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAET-GITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 33 7899999999999999999 335555544 8899888 458999999999999999988864
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=277.98 Aligned_cols=185 Identities=17% Similarity=0.199 Sum_probs=149.0
Q ss_pred ceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----C
Q 024032 66 LNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~ 138 (273)
+++++|++++|+.. ...+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~----l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~ 79 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQ----LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNL 79 (277)
T ss_pred eEEEEEEEEEcCCCCcCee----eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHH
Confidence 68999999999632 2346 999999999999999999999999999999999999 99999999998753 3
Q ss_pred CccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.++|++|++.. +++..|+.+|.. ... +.+.++++.++ ..|||||+||. |+ +
T Consensus 80 ~~~i~~v~q~~~~---~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~ 156 (277)
T PRK13642 80 RRKIGMVFQNPDN---QFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIA 156 (277)
T ss_pred hcceEEEEECHHH---hhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 5679999999742 144458888742 122 22345555544 67999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
.+|++|||||||++||+. +.++++.++.|.|||++ ..||++++|++|++++.|++++++..+.
T Consensus 157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (277)
T PRK13642 157 LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHH
Confidence 899999999999999999 34555655458999998 4589999999999999999999886544
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=289.75 Aligned_cols=179 Identities=16% Similarity=0.259 Sum_probs=147.8
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--------
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-------- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-------- 137 (273)
+++ |++++|. ++ . + ++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 2 l~~-~l~k~~~--~~-~----~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~ 72 (352)
T PRK11144 2 LEL-NFKQQLG--DL-C----L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLP 72 (352)
T ss_pred eEE-EEEEEeC--CE-E----E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccc
Confidence 567 8888884 32 2 4 8999999999999999999999999999999999 99999999988642
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccC-----CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
.++.++|++|++.++ +.+||++|..+ ..+++.+.++.++ .+||||||||. |+ +.+|+
T Consensus 73 ~~~~~i~~v~q~~~l~----~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ 148 (352)
T PRK11144 73 PEKRRIGYVFQDARLF----PHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPE 148 (352)
T ss_pred hhhCCEEEEcCCcccC----CCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 356799999998764 44599998542 2345667777766 67999999987 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+|||||||++||+. +.++++.++.|.|+|++ .+||++++|++|+++..|++++++.+|..
T Consensus 149 llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~ 222 (352)
T PRK11144 149 LLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAM 222 (352)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcch
Confidence 99999999999999 34556655558899888 46899999999999999999999987753
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=270.62 Aligned_cols=174 Identities=18% Similarity=0.174 Sum_probs=139.0
Q ss_pred CceEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC---
Q 024032 65 GLNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS--- 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~--- 138 (273)
.+++++|++++|..+. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~----l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~ 80 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSI----LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEE 80 (228)
T ss_pred ceEEEeeeEEEccCCCcceEE----EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHH
Confidence 4789999999996432 246 999999999999999999999999999999999999 999999999987531
Q ss_pred ------CccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH-
Q 024032 139 ------SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ- 191 (273)
Q Consensus 139 ------~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~- 191 (273)
++.+++++|++.+ +..+|+.||..+ . .+++.++++.++ ..|||||+||.
T Consensus 81 ~~~~~~~~~i~~~~q~~~l----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~ 156 (228)
T PRK10584 81 ARAKLRAKHVGFVFQSFML----IPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVA 156 (228)
T ss_pred HHHHHHhheEEEEEccccc----CCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHH
Confidence 2469999998765 334588887321 1 234455566555 67999999986
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeee
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~ 246 (273)
|+ +.+|++|||||||+|||+. +.++++.++.|.|||++ ..||++++|++|++++.
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 33 7899999999999999999 33555555447899988 44899999999998753
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=272.14 Aligned_cols=169 Identities=18% Similarity=0.230 Sum_probs=134.3
Q ss_pred EEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEe
Q 024032 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYM 146 (273)
Q Consensus 68 ~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~ 146 (273)
+++|++++|+ ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...++.++|++
T Consensus 1 ~~~~l~~~~~--~~~~----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~ 74 (213)
T cd03235 1 EVEDLTVSYG--GHPV----LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVP 74 (213)
T ss_pred CcccceeEEC--CEEe----eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEec
Confidence 3678999884 4566 999999999999999999999999999999999998 99999999988765567799999
Q ss_pred ccchhhhccCCcccccccccC---------------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 147 EEHNVMRSLQSGFCVYDSRGF---------------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 147 q~~~~~~~~~~~~tv~en~~~---------------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
|++.... .+..|++||..+ ..+++.++++.++ .+||||||||. |+ +.+|+
T Consensus 75 q~~~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 152 (213)
T cd03235 75 QRRSIDR--DFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPD 152 (213)
T ss_pred ccccccc--CCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 9876421 234588887321 1223555666654 68999999986 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
+|||||||++||+. +.++++.++ |.|||++ .+||++++|++| +++.
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 153 LLLLDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 99999999999999 345555544 8899888 568999999886 5544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=273.84 Aligned_cols=178 Identities=20% Similarity=0.301 Sum_probs=142.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-----ccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-----~G~I~i~g~~i~~-- 137 (273)
.++++|++++|. +..+ |+++||+|++||+++|+||||||||||+++|+|+++ + +|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~ 74 (247)
T TIGR00972 1 AIEIENLNLFYG--EKEA----LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74 (247)
T ss_pred CEEEEEEEEEEC--Ceee----ecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc
Confidence 368999999984 3456 999999999999999999999999999999999998 7 9999999998752
Q ss_pred -----CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCHHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.++|++|++.++ . .|+++|..+ .. +.+.++++.++ ..|||||
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~----~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 149 (247)
T TIGR00972 75 IDVVELRRRVGMVFQKPNPF----P-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQ 149 (247)
T ss_pred cchHHHHhheEEEecCcccC----C-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHH
Confidence 246799999987643 2 588887321 11 22344444432 5799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
|||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|+++..|++
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 227 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPT 227 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9986 33 7899999999999999999 33555544 4788888 56899999999999999999
Q ss_pred hhhccCh
Q 024032 250 KRLFSAP 256 (273)
Q Consensus 250 ~~l~~~~ 256 (273)
++++..+
T Consensus 228 ~~~~~~~ 234 (247)
T TIGR00972 228 EQIFTNP 234 (247)
T ss_pred HHHHhCC
Confidence 9987654
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=270.62 Aligned_cols=169 Identities=20% Similarity=0.242 Sum_probs=136.6
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--------
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-------- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-------- 137 (273)
++++|+++.|. +++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-~~~~~----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 76 (222)
T PRK10908 2 IRFEHVSKAYL-GGRQA----LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPF 76 (222)
T ss_pred EEEEeeEEEec-CCCeE----EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHH
Confidence 78999999994 23456 999999999999999999999999999999999999 99999999998753
Q ss_pred CCccEEEEeccchhhhccCCccccccccc-------CCHH----HHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNYN----RVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~~----~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
.++.++|++|++.+ ++.+|+.+|.. ...+ .+.++++.++ ..||||||||. |+
T Consensus 77 ~~~~i~~~~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 77 LRRQIGMIFQDHHL----LMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred HHhheEEEecCccc----cccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 24678999998764 44568888732 2222 3445566654 67999999986 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~ 245 (273)
+.+|++|||||||++||+. +.++++.++ +.|+|++ ..||++++|++|+++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 7899999999999999998 335555544 7898888 4589999999999864
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=269.64 Aligned_cols=167 Identities=21% Similarity=0.253 Sum_probs=134.4
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--------
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-------- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-------- 137 (273)
++++|+++.|+.+ +++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~~~-~~~----l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 75 (214)
T cd03292 1 IEFINVTKTYPNG-TAA----LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPY 75 (214)
T ss_pred CEEEEEEEEeCCC-cee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence 4689999999532 456 999999999999999999999999999999999999 99999999998753
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
.++.+++++|++.+ +...|+.+|..+ . .+++.++++.++ .+|||||+||. |+
T Consensus 76 ~~~~i~~v~q~~~~----~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 76 LRRKIGVVFQDFRL----LPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred HHHheEEEecCchh----ccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 24579999999875 344588887321 1 123455566554 67999999986 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
+.+|+++||||||++||+. +.++++.++ |.|||++ .+||++++|++|++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 7899999999999999999 335555544 8899888 46899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=273.14 Aligned_cols=179 Identities=21% Similarity=0.285 Sum_probs=144.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~-- 137 (273)
.++++|++++|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~--~~~~----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKVSFG--QVEV----LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEEEEC--Ceee----eecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 588999999984 4556 999999999999999999999999999999999986 49999999998753
Q ss_pred ---CCccEEEEeccchhhhccCCcccccccccC---------C----HHHHHHHHHHhc-------------ccCCHHHH
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRGF---------N----YNRVHEGLEELS-------------SWMSEGVH 188 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~~---------~----~~~~~~~l~~~~-------------~~LSgGqk 188 (273)
.++.++|++|++.. ++..|+.||..+ . .+.+.++++.++ .+|||||+
T Consensus 77 ~~~~~~~i~~v~q~~~~----~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 77 VIELRRRVQMVFQIPNP----IPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HHHHhccEEEEeccCcc----CCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHH
Confidence 35679999999764 445688888421 1 123445555543 57999999
Q ss_pred HHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChh
Q 024032 189 HNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATK 250 (273)
Q Consensus 189 q~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~ 250 (273)
||. |+ +.+|++|||||||++||+. +.++++. + +.|+|++ .+||++++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTR 230 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHH
Confidence 987 33 7899999999999999999 3345553 3 7888888 468999999999999999999
Q ss_pred hhccCh
Q 024032 251 RLFSAP 256 (273)
Q Consensus 251 ~l~~~~ 256 (273)
++++.+
T Consensus 231 ~~~~~~ 236 (250)
T PRK14247 231 EVFTNP 236 (250)
T ss_pred HHHcCC
Confidence 987654
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=268.39 Aligned_cols=168 Identities=17% Similarity=0.188 Sum_probs=136.0
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCcc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHT 141 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~ 141 (273)
+++++++++|. ++++ |+++||++++| +++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.
T Consensus 1 i~~~~~~~~~~--~~~~----l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 73 (211)
T cd03264 1 LQLENLTKRYG--KKRA----LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRR 73 (211)
T ss_pred CEEEEEEEEEC--CEEE----EcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhh
Confidence 47899999984 4567 99999999999 999999999999999999999999 99999999988753 3567
Q ss_pred EEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
+++++|++.+ +..+|+.||..+ . .+.+.++++.++ .+||||||||. |+ +.+|
T Consensus 74 i~~~~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 149 (211)
T cd03264 74 IGYLPQEFGV----YPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDP 149 (211)
T ss_pred eEEecCCCcc----cccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999875 334588887321 1 223455666654 67999999987 33 7999
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|++++.|
T Consensus 150 ~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 150 SILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999 33555544 5888888 468999999999998754
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=274.49 Aligned_cols=184 Identities=18% Similarity=0.171 Sum_probs=144.0
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee-----CCC-
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS-----SGN- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~-----i~~- 137 (273)
..++++|++++|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|++ +..
T Consensus 5 ~~l~~~~l~~~~~--~~~i----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~ 78 (258)
T PRK11701 5 PLLSVRGLTKLYG--PRKG----CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYAL 78 (258)
T ss_pred ceEEEeeeEEEcC--Ccee----eeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccC
Confidence 4689999999984 3556 999999999999999999999999999999999999 99999999987 543
Q ss_pred --------CCccEEEEeccchhhhccCCccccccccc--------CC----HHHHHHHHHHhc----------ccCCHHH
Q 024032 138 --------SSHTITMYMEEHNVMRSLQSGFCVYDSRG--------FN----YNRVHEGLEELS----------SWMSEGV 187 (273)
Q Consensus 138 --------~~~~i~~v~q~~~~~~~~~~~~tv~en~~--------~~----~~~~~~~l~~~~----------~~LSgGq 187 (273)
.++.++|++|++... +....|+.+|.. .. .+.+.++++.++ .+|||||
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 79 SEAERRRLLRTEWGFVHQHPRDG--LRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGM 156 (258)
T ss_pred CHHHHHHHhhcceEEEeeCcccc--cCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHH
Confidence 134699999987421 123335554421 01 223344455543 6799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+||. |+ +.+|++|||||||++||+. +.++++.++.|.|||++ ..||++++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9986 33 7899999999999999999 33455555448899888 46899999999999999999
Q ss_pred hhhccCh
Q 024032 250 KRLFSAP 256 (273)
Q Consensus 250 ~~l~~~~ 256 (273)
++++.++
T Consensus 237 ~~~~~~~ 243 (258)
T PRK11701 237 DQVLDDP 243 (258)
T ss_pred HHHhcCC
Confidence 9987654
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=282.97 Aligned_cols=167 Identities=20% Similarity=0.327 Sum_probs=145.1
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---------CCccEEEEeccchhhhccC
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---------SSHTITMYMEEHNVMRSLQ 156 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---------~~~~i~~v~q~~~~~~~~~ 156 (273)
.++++||+|+.|||+.|+|-||||||||+++|++|++ ++|+|+++|.++.. .++++++|||+..++|+.
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr- 121 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR- 121 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch-
Confidence 5899999999999999999999999999999999999 99999999999863 457899999999986665
Q ss_pred Cccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH
Q 024032 157 SGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK 212 (273)
Q Consensus 157 ~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~ 212 (273)
||.+|.. .+ .+++.++++.++ .+||||||||+ |+ +.+|+|||||||+|+|||-
T Consensus 122 ---tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPL 198 (386)
T COG4175 122 ---TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPL 198 (386)
T ss_pred ---hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChH
Confidence 9999943 23 345667777777 78999999987 55 7899999999999999998
Q ss_pred ------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 213 ------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 213 ------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
..+.++.++..+||++| ++.|||.+|++|+|+..|+|+|++.+|.
T Consensus 199 IR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PA 257 (386)
T COG4175 199 IRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPA 257 (386)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCcc
Confidence 34556667778999999 5679999999999999999999997764
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=272.48 Aligned_cols=184 Identities=18% Similarity=0.270 Sum_probs=146.6
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
.+.++++|++++|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 2 ~~~l~~~nl~~~~~--~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 75 (252)
T PRK14256 2 NNKVKLEQLNVHFG--KNHA----VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD 75 (252)
T ss_pred CcEEEEEEEEEEeC--CeeE----EecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccc
Confidence 35689999999995 4556 999999999999999999999999999999999974 48999999998742
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSE 185 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSg 185 (273)
.++.+++++|++.+ +...|+.+|..+ .. +.+.++++.++ ..|||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~----~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 151 (252)
T PRK14256 76 RGVDPVSIRRRVGMVFQKPNP----FPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSG 151 (252)
T ss_pred ccCChHHhhccEEEEecCCCC----CCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCH
Confidence 35679999999775 334588877321 11 22344444443 56999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
||+||. |+ +.+|++|||||||+|||+. +.++++.+ +.|||++ .+||++++|++|++++.|
T Consensus 152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14256 152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECG 229 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999987 33 7899999999999999999 34556654 5788888 568999999999999999
Q ss_pred ChhhhccChhhH
Q 024032 248 ATKRLFSAPGLR 259 (273)
Q Consensus 248 ~~~~l~~~~~l~ 259 (273)
++++++.++...
T Consensus 230 ~~~~~~~~~~~~ 241 (252)
T PRK14256 230 ETKKIFTTPEKK 241 (252)
T ss_pred CHHHHHhCCCcH
Confidence 999998765443
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=268.08 Aligned_cols=176 Identities=18% Similarity=0.189 Sum_probs=136.3
Q ss_pred ceEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
.++++|++++|...+ .++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 76 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKA----LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRL 76 (228)
T ss_pred CeEEEeeeEeccCCCcceee----ecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhh
Confidence 368999999995321 256 999999999999999999999999999999999999 99999999998753
Q ss_pred ---CCccEEEEeccchhhhccCCcccccccccC-------C--HHHH----HHHHHHhc----------ccCCHHHHHHH
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N--YNRV----HEGLEELS----------SWMSEGVHHNQ 191 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~--~~~~----~~~l~~~~----------~~LSgGqkq~~ 191 (273)
.++.++|++|++... +...+|+++|..+ . .+.. .+.++.++ ..|||||+||.
T Consensus 77 ~~~~~~~i~~~~q~~~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 77 RKIRRKEIQMVFQDPMSS--LNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred HHHhhccEEEEecCchhh--cCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHH
Confidence 245799999997421 1345688887321 1 1111 23444433 66999999986
Q ss_pred ---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 192 ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 192 ---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
|+ +.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|+++..|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 33 7899999999999999999 33555555447899888 468999999999998654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=274.24 Aligned_cols=180 Identities=18% Similarity=0.254 Sum_probs=144.9
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC-
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~- 137 (273)
..++++|+++.|. ++.+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 11 ~~l~~~~l~~~~~--~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~ 84 (258)
T PRK14268 11 PQIKVENLNLWYG--EKQA----LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84 (258)
T ss_pred eeEEEeeeEEEeC--Ceee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence 4799999999884 4566 999999999999999999999999999999999985 59999999988742
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc-------------ccCCHHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.++|++|++.++ ..|+++|..+ .. +.+.++++.++ ..|||||
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 159 (258)
T PRK14268 85 DVDVVELRKNVGMVFQKPNPF-----PMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQ 159 (258)
T ss_pred cchHHHHhhhEEEEecCCccC-----cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHH
Confidence 345799999987643 2588887421 11 22445555442 5799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+||. |+ +.+|++|||||||++||+. +.++++. + +.|||++ ++||++++|++|++++.|++
T Consensus 160 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 237 (258)
T PRK14268 160 QQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQT 237 (258)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9987 33 7899999999999999999 3355554 3 7899888 56899999999999999999
Q ss_pred hhhccChh
Q 024032 250 KRLFSAPG 257 (273)
Q Consensus 250 ~~l~~~~~ 257 (273)
++++.++.
T Consensus 238 ~~~~~~~~ 245 (258)
T PRK14268 238 RQIFHNPR 245 (258)
T ss_pred HHHhcCCC
Confidence 99976543
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=268.00 Aligned_cols=167 Identities=22% Similarity=0.252 Sum_probs=132.7
Q ss_pred EEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCcc
Q 024032 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHT 141 (273)
Q Consensus 68 ~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~ 141 (273)
+++|++++|..+.+++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.
T Consensus 1 ~~~~l~~~~~~~~~~i----l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (211)
T cd03225 1 ELKNLSFSYPDGARPA----LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRK 76 (211)
T ss_pred CceeEEEecCCCCeee----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhh
Confidence 4688999985322567 999999999999999999999999999999999999 99999999998753 3467
Q ss_pred EEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
++|++|++... ++..|+.+|..+ . .+.+.+.++.++ ..||||||||. |+ +.+|
T Consensus 77 i~~~~q~~~~~---~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 153 (211)
T cd03225 77 VGLVFQNPDDQ---FFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP 153 (211)
T ss_pred ceEEecChhhh---cCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 89999987431 345588887321 1 123445565554 67999999986 33 7899
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCe
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGD 242 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~ 242 (273)
++|||||||+|||+. +.++++.++ |.|||++ .+||++++|++|+
T Consensus 154 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 154 DILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999 335556555 8899988 4589999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=329.65 Aligned_cols=213 Identities=14% Similarity=0.171 Sum_probs=174.1
Q ss_pred hhccchhhhhhhhHHHHHHHhchhhhcc-------------------------CCCCceEEEEEEEEeecCCeeeeccce
Q 024032 34 KLKLDLPNVSTLTPRLRVLREMERLALI-------------------------APDGLNELRHKFLSYRSGDFWIPIGGI 88 (273)
Q Consensus 34 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~-------------------------~~~~~i~~~~v~~~y~~g~~~v~~~~L 88 (273)
..-..+.....+.+|+.++.+.+++... +..+.|+++||+++|+.+..++ |
T Consensus 1160 ~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~v----L 1235 (1490)
T TIGR01271 1160 NSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAV----L 1235 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcce----e
Confidence 3345667778889999998865432110 1135799999999998665667 9
Q ss_pred eeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccc
Q 024032 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYD 163 (273)
Q Consensus 89 ~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~e 163 (273)
+|+||+|++||.+||+|+||||||||+++|+|+++.+|+|.+||.++.. +|+++++++|++.+ |..|+++
T Consensus 1236 ~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~L-----F~GTIR~ 1310 (1490)
T TIGR01271 1236 QDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFI-----FSGTFRK 1310 (1490)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCcc-----CccCHHH
Confidence 9999999999999999999999999999999998888999999999874 67899999999985 4569999
Q ss_pred ccc----CCHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--H
Q 024032 164 SRG----FNYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--S 213 (273)
Q Consensus 164 n~~----~~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~ 213 (273)
|.. .+++++.++++.++ ..||||||||. |+ +++|+|||||||||+||+. .
T Consensus 1311 NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~ 1390 (1490)
T TIGR01271 1311 NLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQ 1390 (1490)
T ss_pred HhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHH
Confidence 953 36778888888765 36999999986 55 8999999999999999999 2
Q ss_pred HHH-HHHhc-CCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 214 SPK-YVLRR-VDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 214 ~l~-~l~~~-~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
.+. .+.+. .++|||+| ..+|+|++|++|+|++.|+|+++++.
T Consensus 1391 ~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~ 1441 (1490)
T TIGR01271 1391 IIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE 1441 (1490)
T ss_pred HHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 222 23221 27899999 45899999999999999999999853
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=270.79 Aligned_cols=176 Identities=15% Similarity=0.140 Sum_probs=137.9
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc--c-CccEEEECCeeCCC------
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~--~-~~G~I~i~g~~i~~------ 137 (273)
++++|++++|+ ++.+ |+++||+|++||+++|+||||||||||+++|+|++ + ++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~--~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR01978 1 LKIKDLHVSVE--DKEI----LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74 (243)
T ss_pred CeEeeEEEEEC--CEEE----EeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHh
Confidence 47899999994 4567 99999999999999999999999999999999994 6 89999999998753
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC--------------C----HHHHHHHHHHhc----------c-cCCHHHH
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------------N----YNRVHEGLEELS----------S-WMSEGVH 188 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------------~----~~~~~~~l~~~~----------~-~LSgGqk 188 (273)
.+..+++++|++..+ ...|+.+|... + .+.+.+.++.++ . .||||||
T Consensus 75 ~~~~i~~v~q~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 75 ARAGLFLAFQYPEEI----PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred hccceEeeecccccc----CCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHH
Confidence 123488999998754 33466665210 1 123444554443 3 4999999
Q ss_pred HHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------ee-CCEEEEEeCCeEeeecCh
Q 024032 189 HNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NI-AEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 189 q~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~-ad~i~vl~~G~i~~~g~~ 249 (273)
||. |+ +.+|++|||||||++||+. +.++++.++ |.|||++ .. ||++++|++|+++..|++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREP-DRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCH
Confidence 987 33 7899999999999999999 345555543 8899988 34 799999999999999998
Q ss_pred hhhc
Q 024032 250 KRLF 253 (273)
Q Consensus 250 ~~l~ 253 (273)
+++.
T Consensus 230 ~~~~ 233 (243)
T TIGR01978 230 ELAK 233 (243)
T ss_pred HHhc
Confidence 7653
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=270.19 Aligned_cols=186 Identities=19% Similarity=0.263 Sum_probs=148.7
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i 142 (273)
+++++++++|+ ++++ |+++||++.+||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.+
T Consensus 1 i~i~~l~~~~~--~~~i----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i 74 (237)
T TIGR00968 1 IEIANISKRFG--SFQA----LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKI 74 (237)
T ss_pred CEEEEEEEEEC--Ceee----eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCE
Confidence 47899999985 4567 999999999999999999999999999999999999 99999999998753 34578
Q ss_pred EEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
++++|++..+ ...|+.+|..+ . .+.+.++++.++ ..||+||+||. |+ +++|+
T Consensus 75 ~~~~q~~~~~----~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (237)
T TIGR00968 75 GFVFQHYALF----KHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ 150 (237)
T ss_pred EEEecChhhc----cCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999988753 34577777321 1 223455566654 57999999986 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHHHh
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRKCS 262 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~~~ 262 (273)
++||||||++||+. +.++++.++.+.|||++ +.||++++|++|++++.|++++++..+....++
T Consensus 151 llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~~~~~~ 228 (237)
T TIGR00968 151 VLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVM 228 (237)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcCCCcHHHH
Confidence 99999999999999 33455554447899888 568999999999999999999987665444333
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=267.37 Aligned_cols=166 Identities=19% Similarity=0.283 Sum_probs=133.9
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------C
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-------S 138 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-------~ 138 (273)
++++|++++|. ++++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .
T Consensus 1 l~~~~l~~~~~--~~~~----l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (213)
T cd03262 1 IEIKNLHKSFG--DFHV----LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINEL 74 (213)
T ss_pred CEEEEEEEEEC--CeEe----ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHH
Confidence 47899999984 3566 999999999999999999999999999999999999 99999999998732 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
++.++|++|++.+ +..+|+.||..+ .. +.+.++++.++ .+|||||+||. |+
T Consensus 75 ~~~i~~~~q~~~~----~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 75 RQKVGMVFQQFNL----FPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred HhcceEEeccccc----CCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 4679999999875 334588887321 11 23445555554 67999999986 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
+.+|++|||||||+|||+. +.++++.++ |.|||++ .+||++++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 7899999999999999999 345556554 8899888 56899999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=273.19 Aligned_cols=183 Identities=17% Similarity=0.274 Sum_probs=144.4
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
..+++++|+++.|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 10 ~~~l~i~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 10 QEVYQINGMNLWYG--QHHA----LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred CceEEEeeEEEEEC--Ceee----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 34799999999984 4566 999999999999999999999999999999999974 48999999998742
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSE 185 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSg 185 (273)
.++.++|++|++.++ ..|+++|..+ .. +++.++++.++ .+|||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~ 158 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPF-----PQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSG 158 (259)
T ss_pred cccCHHHHhhceEEEecCCccc-----ccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCH
Confidence 346799999997653 2378877321 11 12333444432 56999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
||+||. |+ +.+|++|||||||++||+. +.++++.+ +.|+|++ ..||++++|++|++++.|
T Consensus 159 Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g 236 (259)
T PRK14274 159 GQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNMQQAARVSDQTAFFYMGELVECN 236 (259)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999987 33 7899999999999999999 33455543 6888888 568999999999999999
Q ss_pred ChhhhccChhhH
Q 024032 248 ATKRLFSAPGLR 259 (273)
Q Consensus 248 ~~~~l~~~~~l~ 259 (273)
++++++.++...
T Consensus 237 ~~~~~~~~~~~~ 248 (259)
T PRK14274 237 DTNKMFSNPDDQ 248 (259)
T ss_pred CHHHHhhCCCCH
Confidence 999998665443
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=271.60 Aligned_cols=178 Identities=19% Similarity=0.251 Sum_probs=143.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc---c-CccEEEECCeeCCC----
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL---S-RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~---~-~~G~I~i~g~~i~~---- 137 (273)
.++++|+++.|+ ++++ |+++||+|++||+++|+||||||||||+++|+|++ + ++|+|.++|+++..
T Consensus 2 ~~~~~~l~~~~~--~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 2 IAKTTNLNLFYG--KKQA----LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred ceeeeeeEEEEC--CEee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH
Confidence 478999999994 4566 99999999999999999999999999999999997 3 79999999998753
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccC---------C----HHHHHHHHHHhc-------------ccCCHHHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGF---------N----YNRVHEGLEELS-------------SWMSEGVHHN 190 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~---------~----~~~~~~~l~~~~-------------~~LSgGqkq~ 190 (273)
.++.++|++|++.++ ..|++||..+ . .+++.+.++.++ ..|||||+||
T Consensus 76 ~~~~~i~~~~q~~~l~-----~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 150 (246)
T PRK14269 76 ALRKNVGMVFQQPNVF-----VKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQR 150 (246)
T ss_pred HHhhhEEEEecCCccc-----cccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHH
Confidence 356799999998753 3488888421 1 112344555433 4699999998
Q ss_pred H---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 191 Q---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 191 ~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
. |+ +++|++|||||||++||+. +.++++. + +.|+|++ ..||++++|++|++++.|+++++
T Consensus 151 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 151 LCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHH
Confidence 6 33 7899999999999999999 2344443 3 7898888 56899999999999999999998
Q ss_pred ccCh
Q 024032 253 FSAP 256 (273)
Q Consensus 253 ~~~~ 256 (273)
+..+
T Consensus 229 ~~~~ 232 (246)
T PRK14269 229 FENP 232 (246)
T ss_pred HhCC
Confidence 7654
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=271.10 Aligned_cols=185 Identities=18% Similarity=0.259 Sum_probs=145.8
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-----ccEEEECCeeCCC-
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGN- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-----~G~I~i~g~~i~~- 137 (273)
..++++|++++|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ + +|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~--~~~i----l~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~ 76 (251)
T PRK14249 3 PKIKIRGVNFFYH--KHQV----LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSP 76 (251)
T ss_pred ceEEEEEEEEEEC--CeeE----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccc
Confidence 4689999999984 4556 999999999999999999999999999999999998 6 5999999998742
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC-------C-H----HHHHHHHHHhc-------------ccCCHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N-Y----NRVHEGLEELS-------------SWMSEG 186 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~-~----~~~~~~l~~~~-------------~~LSgG 186 (273)
.++.++|++|++.++ ..|+.||..+ . . +.+.++++.++ ..||||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 151 (251)
T PRK14249 77 NLDVVNLRKRVGMVFQQPNPF-----PKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGG 151 (251)
T ss_pred ccChHHhhceEEEEecCCccC-----cCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHH
Confidence 356799999998743 2378877322 1 1 12233333321 579999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
|+||. |+ +.+|++|||||||++||+. +.++++. + +.|||++ ..||++++|++|++++.|+
T Consensus 152 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14249 152 QQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGR 229 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCC
Confidence 99987 33 7899999999999999999 3345553 3 7899988 4589999999999999999
Q ss_pred hhhhccChhhHHHh
Q 024032 249 TKRLFSAPGLRKCS 262 (273)
Q Consensus 249 ~~~l~~~~~l~~~~ 262 (273)
+++++..+...+++
T Consensus 230 ~~~~~~~~~~~~~~ 243 (251)
T PRK14249 230 TGEIFSRPRDKRTE 243 (251)
T ss_pred HHHHHhCCCChHHH
Confidence 99998766554443
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=271.09 Aligned_cols=181 Identities=20% Similarity=0.303 Sum_probs=144.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC---cc-C--ccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV---LS-R--SGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl---~~-~--~G~I~i~g~~i~~-- 137 (273)
+++++|+++.|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+ ++ . +|+|.++|+++..
T Consensus 3 ~l~~~~~~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14245 3 KIDARDVNFWYG--DFHA----LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKG 76 (250)
T ss_pred EEEEEEEEEEEC--CEeE----EeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccc
Confidence 688999999984 4566 9999999999999999999999999999999997 34 2 8999999998742
Q ss_pred -----CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc-------------ccCCHHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.++|++|++.++ ..|+.+|..+ . .+.+.++++.++ ..|||||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~-----~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 151 (250)
T PRK14245 77 VQVDELRKNVGMVFQRPNPF-----PKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQ 151 (250)
T ss_pred ccHHHHhhheEEEecCCccC-----cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHH
Confidence 245799999987643 2477777321 1 123445555442 4799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
|||. |+ +.+|++|||||||+|||+. +.++++. + +.|||++ .+||++++|++|++++.|++
T Consensus 152 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~ 229 (250)
T PRK14245 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDT 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCH
Confidence 9986 33 7899999999999999999 3355553 3 7898888 56899999999999999999
Q ss_pred hhhccChhhH
Q 024032 250 KRLFSAPGLR 259 (273)
Q Consensus 250 ~~l~~~~~l~ 259 (273)
+++++++...
T Consensus 230 ~~~~~~~~~~ 239 (250)
T PRK14245 230 KKIFTNPEKE 239 (250)
T ss_pred HHHhcCCCCh
Confidence 9998765444
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=271.15 Aligned_cols=180 Identities=19% Similarity=0.249 Sum_probs=142.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~-- 137 (273)
+++++|++++|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~--~~~~----l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 5 ILQVSDLSVYYN--KKKA----LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred eEEEEeeEEEEC--Ceee----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc
Confidence 689999999984 4556 999999999999999999999999999999999853 28999999998732
Q ss_pred -----CCccEEEEeccchhhhccCCccccccccc-------CC-H----HHHHHHHHHhc-------------ccCCHHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FN-Y----NRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~-~----~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.+++++|++.++ ..|++||.. .. . +.+.++++.++ .+||+||
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 153 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQPNPF-----PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQ 153 (252)
T ss_pred cchHhhhhcEEEEecCCccC-----cCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHH
Confidence 356799999997643 358888732 11 1 22333343331 6799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
|||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|++++.|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 231 (252)
T PRK14239 154 QQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDT 231 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9986 33 7899999999999999999 33555543 6788888 56899999999999999999
Q ss_pred hhhccChhh
Q 024032 250 KRLFSAPGL 258 (273)
Q Consensus 250 ~~l~~~~~l 258 (273)
+++++.+..
T Consensus 232 ~~~~~~~~~ 240 (252)
T PRK14239 232 KQMFMNPKH 240 (252)
T ss_pred HHHHhCCCC
Confidence 999876543
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=265.17 Aligned_cols=169 Identities=19% Similarity=0.244 Sum_probs=135.6
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i 142 (273)
++++|++++|. ++ ..++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.+
T Consensus 1 i~~~~l~~~~~--~~------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i 72 (211)
T cd03298 1 VRLDKIRFSYG--EQ------PMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPV 72 (211)
T ss_pred CEEEeEEEEeC--CE------ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccE
Confidence 47899999984 22 239999999999999999999999999999999999 99999999998753 34579
Q ss_pred EEEeccchhhhccCCcccccccccC-----------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF-----------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~-----------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
++++|++.++ ..+|+.||..+ ..+++.++++.++ ..||||||||. |+ +.+|+
T Consensus 73 ~~~~q~~~~~----~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~ 148 (211)
T cd03298 73 SMLFQENNLF----AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKP 148 (211)
T ss_pred EEEecccccC----CCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999998753 34588887321 1234556666655 67999999986 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
+|||||||++||+. +.++++.++.|.|||++ .+||++++|++|++++.|
T Consensus 149 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 149 VLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999 33555554448899988 458999999999998653
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=274.55 Aligned_cols=191 Identities=17% Similarity=0.167 Sum_probs=147.8
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-C-Ccc
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-S-SHT 141 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-~-~~~ 141 (273)
..++++|++++|+ +++++ |+++||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|+++.. . ++.
T Consensus 5 ~~l~~~~l~~~~~-~~~~i----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (272)
T PRK15056 5 AGIVVNDVTVTWR-NGHTA----LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNL 79 (272)
T ss_pred ceEEEEeEEEEec-CCcEE----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccce
Confidence 3689999999995 23567 999999999999999999999999999999999999 99999999998753 2 245
Q ss_pred EEEEeccchhhhccCCccccccccc-----------C----CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRG-----------F----NYNRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~-----------~----~~~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
++|++|++.... .+..++.+|.. . ..+.+.++++.++ ..|||||+||. |+
T Consensus 80 i~~v~q~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL 157 (272)
T PRK15056 80 VAYVPQSEEVDW--SFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAI 157 (272)
T ss_pred EEEecccccccc--CCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 899999865311 11223444321 0 1223455666655 67999999986 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
+.+|++|||||||++||+. +.++++.++ |.|||++ .+||+++++ +|+++..|++++++..+.+.
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~~~~~~ 235 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFTAENLE 235 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccCHHHHH
Confidence 7899999999999999999 345556554 8899888 568999777 89999999999987766666
Q ss_pred HHhCC
Q 024032 260 KCSKI 264 (273)
Q Consensus 260 ~~~~~ 264 (273)
+.|..
T Consensus 236 ~~~~~ 240 (272)
T PRK15056 236 LAFSG 240 (272)
T ss_pred HHhcc
Confidence 66643
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=270.74 Aligned_cols=185 Identities=15% Similarity=0.172 Sum_probs=149.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
+++++|++++|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|. ..++|
T Consensus 4 ~l~~~~l~~~~~--~~~v----l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~------~~i~~ 71 (251)
T PRK09544 4 LVSLENVSVSFG--QRRV----LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK------LRIGY 71 (251)
T ss_pred EEEEeceEEEEC--CceE----EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc------cCEEE
Confidence 689999999995 4556 999999999999999999999999999999999999 9999999872 46899
Q ss_pred EeccchhhhccCCcccccccc----cCCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCC
Q 024032 145 YMEEHNVMRSLQSGFCVYDSR----GFNYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAE 207 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~----~~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts 207 (273)
++|++.+++. ...++.++. +...+++.++++.++ ..|||||+||. ++ +.+|++|||||||+
T Consensus 72 v~q~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 72 VPQKLYLDTT--LPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred eccccccccc--cChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9998765322 123566652 223455667777665 67999999986 33 78999999999999
Q ss_pred CCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHHHhCCc
Q 024032 208 IDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRKCSKIS 265 (273)
Q Consensus 208 ~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~~~~~~ 265 (273)
+||+. +.++++.++.|.|||++ ..||++++|++ +++..|+++++.+.+.+.+.|+.+
T Consensus 150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~~~~~~~~~~~ 220 (251)
T PRK09544 150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLHPEFISMFGPR 220 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCCHHHHHHhCCC
Confidence 99999 23455554447899988 56899999965 799999999998888788888764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=273.38 Aligned_cols=182 Identities=18% Similarity=0.258 Sum_probs=143.5
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
...++++|++++|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 19 ~~~l~~~~l~~~~~--~~~i----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 19 EHILEVKDLSIYYG--EKRA----VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred CceEEEEEEEEEeC--Ccee----eeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 45799999999994 4556 999999999999999999999999999999999853 68999999998742
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHh-------------cccCCH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEEL-------------SSWMSE 185 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~-------------~~~LSg 185 (273)
.++.++|++|++.++ ..|+++|..+ . .+.+.++++.+ ..+|||
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 167 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPF-----PKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSG 167 (268)
T ss_pred ccccHHHHhccEEEEecCCccC-----cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCH
Confidence 346799999987643 2377777321 1 12233333322 167999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
||+||. |+ +.+|++|||||||+|||+. +.++++.+ +.|||++ .+||++++|++|++++.|
T Consensus 168 Gq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 245 (268)
T PRK14248 168 GQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYD 245 (268)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999986 33 7899999999999999999 33455543 6788888 568999999999999999
Q ss_pred ChhhhccChhh
Q 024032 248 ATKRLFSAPGL 258 (273)
Q Consensus 248 ~~~~l~~~~~l 258 (273)
+++++++++..
T Consensus 246 ~~~~~~~~~~~ 256 (268)
T PRK14248 246 QTEQIFTSPKQ 256 (268)
T ss_pred CHHHHHhCCCC
Confidence 99998866443
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=268.70 Aligned_cols=181 Identities=21% Similarity=0.285 Sum_probs=142.3
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSH 140 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~ 140 (273)
++++|++++|...+.++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++
T Consensus 1 i~~~~l~~~~~~~~~~~----l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (234)
T cd03251 1 VEFKNVTFRYPGDGPPV----LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76 (234)
T ss_pred CEEEEEEEEeCCCCccc----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHh
Confidence 47899999996433356 999999999999999999999999999999999999 99999999988753 346
Q ss_pred cEEEEeccchhhhccCCcccccccccC-----CHHHHH---------HHHHHh-----------cccCCHHHHHHH---H
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVH---------EGLEEL-----------SSWMSEGVHHNQ---R 192 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~---------~~l~~~-----------~~~LSgGqkq~~---r 192 (273)
.+++++|++.++ ..|++||..+ ....+. +.++.+ ...||+||+||. |
T Consensus 77 ~i~~~~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~ 151 (234)
T cd03251 77 QIGLVSQDVFLF-----NDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIAR 151 (234)
T ss_pred hEEEeCCCCeec-----cccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHH
Confidence 799999987643 3588887432 122222 223222 157999999986 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+ +.+|++|||||||++||+. +.++++. + +.|||++ ..||++++|++|+++..++++++......
T Consensus 152 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~ 229 (234)
T cd03251 152 ALLKDPPILILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGV 229 (234)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcc
Confidence 3 7899999999999999999 3344554 3 7899888 34899999999999999999888755433
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=296.15 Aligned_cols=183 Identities=15% Similarity=0.160 Sum_probs=150.6
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC-----
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS----- 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~----- 138 (273)
..++++|++++|. ++.+ |+++||+|++|+++||+||||||||||+|+|+|+++ ++|+|.++|+++...
T Consensus 10 ~~l~~~~l~~~~~--~~~i----l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 83 (510)
T PRK15439 10 PLLCARSISKQYS--GVEV----LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKA 83 (510)
T ss_pred ceEEEEeEEEEeC--Ccee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 4799999999994 4567 999999999999999999999999999999999998 999999999987531
Q ss_pred -CccEEEEeccchhhhccCCcccccccccCC-------HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 139 -SHTITMYMEEHNVMRSLQSGFCVYDSRGFN-------YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 139 -~~~i~~v~q~~~~~~~~~~~~tv~en~~~~-------~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
++.++|++|++.+ +..+||+||..+. .+++.++++.++ .+||||||||. |+ +.+|
T Consensus 84 ~~~~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p 159 (510)
T PRK15439 84 HQLGIYLVPQEPLL----FPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDS 159 (510)
T ss_pred HhCCEEEEeccCcc----CCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCC
Confidence 2468999999765 4456898884321 234566677665 68999999987 33 7899
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+++..|+++++.....+
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 233 (510)
T PRK15439 160 RILILDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDII 233 (510)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHHHH
Confidence 999999999999999 345566555 8999999 56899999999999999999887654433
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=270.01 Aligned_cols=180 Identities=21% Similarity=0.294 Sum_probs=142.6
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC-
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~- 137 (273)
+.++++|+++.|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 2 ~~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14240 2 GKISVKDLDLFYG--DFQA----LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKS 75 (250)
T ss_pred CeEEEEEEEEEEC--Ccee----eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 3689999999995 3456 999999999999999999999999999999999864 48999999998742
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc-------------ccCCHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS-------------SWMSEG 186 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~-------------~~LSgG 186 (273)
.++.+++++|++.++ ..|+++|..+ . .+.+.++++.++ ..||||
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~-----~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 150 (250)
T PRK14240 76 DIDVNQLRKRVGMVFQQPNPF-----PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGG 150 (250)
T ss_pred ccchHHHhccEEEEecCCccC-----cccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHH
Confidence 356799999987643 2588887321 1 122333333331 579999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
|+||. |+ +.+|++|||||||++||+. +.++++. + +.|||++ .+||++++|++|+++..++
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 151 QQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99986 33 7899999999999999999 3345553 3 7898888 5689999999999999999
Q ss_pred hhhhccChh
Q 024032 249 TKRLFSAPG 257 (273)
Q Consensus 249 ~~~l~~~~~ 257 (273)
+++++..+.
T Consensus 229 ~~~~~~~~~ 237 (250)
T PRK14240 229 TVDLFTNPK 237 (250)
T ss_pred HHHHHhCCC
Confidence 999876543
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=296.79 Aligned_cols=186 Identities=15% Similarity=0.130 Sum_probs=149.8
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC-----
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS----- 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~----- 138 (273)
.+++++|++++|. ++++ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++...
T Consensus 4 ~~l~~~~l~~~~~--~~~i----l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~ 77 (510)
T PRK09700 4 PYISMAGIGKSFG--PVHA----LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLA 77 (510)
T ss_pred ceEEEeeeEEEcC--CeEE----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHH
Confidence 3689999999984 4567 999999999999999999999999999999999998 999999999987542
Q ss_pred -CccEEEEeccchhhhccCCcccccccccC--------------C----HHHHHHHHHHhc---------ccCCHHHHHH
Q 024032 139 -SHTITMYMEEHNVMRSLQSGFCVYDSRGF--------------N----YNRVHEGLEELS---------SWMSEGVHHN 190 (273)
Q Consensus 139 -~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------------~----~~~~~~~l~~~~---------~~LSgGqkq~ 190 (273)
++.++|++|++.+ +..+||+||..+ + .+++.++++.++ .+||||||||
T Consensus 78 ~~~~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr 153 (510)
T PRK09700 78 AQLGIGIIYQELSV----IDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQM 153 (510)
T ss_pred HHCCeEEEeecccc----cCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHH
Confidence 2469999998765 334577776321 1 123455666655 6799999998
Q ss_pred H---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 191 Q---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 191 ~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
. |+ +.+|++|||||||++||+. +.+++++++ |.|||++ .+||++++|++|+++..|+++++
T Consensus 154 v~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 154 LEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 7 33 7899999999999999999 345666655 8999998 56899999999999999999887
Q ss_pred ccChhhHHH
Q 024032 253 FSAPGLRKC 261 (273)
Q Consensus 253 ~~~~~l~~~ 261 (273)
.....+...
T Consensus 233 ~~~~~~~~~ 241 (510)
T PRK09700 233 SNDDIVRLM 241 (510)
T ss_pred CHHHHHHHh
Confidence 654444333
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=273.23 Aligned_cols=181 Identities=16% Similarity=0.244 Sum_probs=144.5
Q ss_pred CCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCC
Q 024032 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (273)
Q Consensus 63 ~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~ 136 (273)
.+..++++|++++|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|+++|+++.
T Consensus 16 ~~~~l~~~nl~~~~~--~~~i----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 16 TEIKMRARDVSVFYG--EKQA----LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred CCceEEEEeEEEEEC--CEEE----EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence 355899999999994 4567 999999999999999999999999999999999985 6999999999874
Q ss_pred C-------CCccEEEEeccchhhhccCCcccccccccC---------C----HHHHHHHHHHhc-------------ccC
Q 024032 137 N-------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF---------N----YNRVHEGLEELS-------------SWM 183 (273)
Q Consensus 137 ~-------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~---------~----~~~~~~~l~~~~-------------~~L 183 (273)
. .++.+++++|++.++ ..|+.+|..+ . .+++.++++.++ ..|
T Consensus 90 ~~~~~~~~~~~~i~~v~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 164 (267)
T PRK14235 90 DPRLDVVELRARVGMVFQKPNPF-----PKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGL 164 (267)
T ss_pred ccccchHHHhhceEEEecCCCCC-----CCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccC
Confidence 2 346789999987643 2377777321 1 122344454432 569
Q ss_pred CHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee
Q 024032 184 SEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 184 SgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~ 245 (273)
||||+||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|+++.
T Consensus 165 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~ 242 (267)
T PRK14235 165 SGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQQAARVSQRTAFFHLGNLVE 242 (267)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 99999987 33 7899999999999999999 33555543 6788888 5689999999999999
Q ss_pred ecChhhhccCh
Q 024032 246 LDATKRLFSAP 256 (273)
Q Consensus 246 ~g~~~~l~~~~ 256 (273)
.|++++++.++
T Consensus 243 ~g~~~~~~~~~ 253 (267)
T PRK14235 243 VGDTEKMFTNP 253 (267)
T ss_pred eCCHHHHHhCC
Confidence 99999987544
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=264.52 Aligned_cols=170 Identities=19% Similarity=0.294 Sum_probs=138.3
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i 142 (273)
++++|++++|.. . ++++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.+
T Consensus 1 ~~~~~l~~~~~~----~----~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i 72 (213)
T TIGR01277 1 LALDKVRYEYEH----L----PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPV 72 (213)
T ss_pred CeEEeeeEEeCC----c----ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccce
Confidence 468999999841 3 789999999999999999999999999999999999 99999999998753 45679
Q ss_pred EEEeccchhhhccCCcccccccccC-----------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF-----------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~-----------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
++++|++.+ +..+|+.||..+ ..+++.++++.++ ..||+||+||. |+ +.+|+
T Consensus 73 ~~v~q~~~~----~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 148 (213)
T TIGR01277 73 SMLFQENNL----FAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNP 148 (213)
T ss_pred EEEeccCcc----CCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 999999875 344588887421 1234555666655 67999999986 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
++||||||++||+. +.++++.++.+.|||++ ..||++++|++|++++.|.
T Consensus 149 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 149 ILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999 34555554447899888 4689999999999998764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=285.13 Aligned_cols=177 Identities=16% Similarity=0.229 Sum_probs=143.9
Q ss_pred EEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---------CCc
Q 024032 71 HKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---------SSH 140 (273)
Q Consensus 71 ~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---------~~~ 140 (273)
|++++|. + .. + ++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++
T Consensus 4 ~l~~~~~--~-~~----~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ 75 (354)
T TIGR02142 4 RFSKRLG--D-FS----L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75 (354)
T ss_pred EEEEEEC--C-EE----E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhC
Confidence 6788773 3 23 6 8999999999999999999999999999999999 99999999988742 346
Q ss_pred cEEEEeccchhhhccCCcccccccccCC---------HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGFN---------YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~~---------~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
.+++++|++.++ ..+||+||..+. .+++.+.++.++ .+||||||||. |+ +.+|+
T Consensus 76 ~i~~v~q~~~l~----~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 76 RIGYVFQEARLF----PHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred CeEEEecCCccC----CCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 799999998754 445899884321 123566677665 67999999987 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
+|||||||++||+. +.++++.++.|.|||++ .+||++++|++|+++..|++++++..+...
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 226 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLP 226 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCcc
Confidence 99999999999999 34556655558899888 468999999999999999999998776543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=297.33 Aligned_cols=209 Identities=18% Similarity=0.137 Sum_probs=163.2
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhh---cc---CCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEE
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLA---LI---APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~---~~---~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
.+..+......++.+..+.+|+.++.+.+... .. ...+.++++|++|+|+. +.++ |+++||+|++|+++
T Consensus 278 pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~-~~~~----l~~i~~~i~~G~~~ 352 (547)
T PRK10522 278 PLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELRNVTFAYQD-NGFS----VGPINLTIKRGELL 352 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCcCceEEEEEEEEEeCC-CCeE----EecceEEEcCCCEE
Confidence 34555556667788899999999886543211 00 11246999999999963 3456 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-cCCHHHHHH
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-GFNYNRVHE 174 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-~~~~~~~~~ 174 (273)
||+||||||||||+++|+|+++ ++|+|.++|+++.+ +++.+++++|++.+|+ .|+++|. ..+.+.+.+
T Consensus 353 aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-----~ti~~n~~~~~~~~~~~ 427 (547)
T PRK10522 353 FLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFD-----QLLGPEGKPANPALVEK 427 (547)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHH-----HhhccccCchHHHHHHH
Confidence 9999999999999999999999 99999999999864 5678999999998654 4777772 344556666
Q ss_pred HHHHhc--------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHHH--HH-HHH---HhcCCcEEEEc-
Q 024032 175 GLEELS--------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLKS--SP-KYV---LRRVDFAMVVS- 229 (273)
Q Consensus 175 ~l~~~~--------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~~--~l-~~l---~~~~g~tiiiv- 229 (273)
.++.++ ..||||||||. |+ +++|++|||||||++||+.. .+ +.+ .++.++|+|+|
T Consensus 428 ~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~it 507 (547)
T PRK10522 428 WLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAIS 507 (547)
T ss_pred HHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 666553 37999999986 44 89999999999999999992 22 222 22237899888
Q ss_pred ------eeCCEEEEEeCCeEeee
Q 024032 230 ------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 230 ------~~ad~i~vl~~G~i~~~ 246 (273)
..||+|++|++|++++.
T Consensus 508 H~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 508 HDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred echHHHHhCCEEEEEECCEEEEe
Confidence 45899999999999876
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=272.19 Aligned_cols=187 Identities=19% Similarity=0.240 Sum_probs=148.3
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-----ccEEEECCeeCC--
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSG-- 136 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-----~G~I~i~g~~i~-- 136 (273)
..++++|++++|. +..+ |+++||++++|++++|+||||||||||+++|+|+++ + +|+|.++|+++.
T Consensus 6 ~~l~~~nl~~~~~--~~~i----l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~ 79 (261)
T PRK14258 6 PAIKVNNLSFYYD--TQKI----LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER 79 (261)
T ss_pred ceEEEeeEEEEeC--CeeE----eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcc
Confidence 3689999999994 3456 999999999999999999999999999999999998 5 799999998863
Q ss_pred -----CCCccEEEEeccchhhhccCCccccccccc-------C-CH----HHHHHHHHHhc-------------ccCCHH
Q 024032 137 -----NSSHTITMYMEEHNVMRSLQSGFCVYDSRG-------F-NY----NRVHEGLEELS-------------SWMSEG 186 (273)
Q Consensus 137 -----~~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~-~~----~~~~~~l~~~~-------------~~LSgG 186 (273)
..++.+++++|++.++ ..|++||.. . .. +.+.++++.++ ..||||
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 154 (261)
T PRK14258 80 RVNLNRLRRQVSMVHPKPNLF-----PMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGG 154 (261)
T ss_pred ccchHHhhccEEEEecCCccC-----cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHH
Confidence 1346689999987643 258888732 1 11 22344454442 579999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC-----CeE
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKA-----GDS 243 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~-----G~i 243 (273)
|+||. |+ +++|++|||||||++||+. +.+++++++.+.|||++ ++||++++|++ |++
T Consensus 155 q~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i 234 (261)
T PRK14258 155 QQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQL 234 (261)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceE
Confidence 99986 33 7899999999999999999 33455544348899888 56899999999 999
Q ss_pred eeecChhhhccChhhHHHh
Q 024032 244 KPLDATKRLFSAPGLRKCS 262 (273)
Q Consensus 244 ~~~g~~~~l~~~~~l~~~~ 262 (273)
+..|++++++..+.....+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~ 253 (261)
T PRK14258 235 VEFGLTKKIFNSPHDSRTR 253 (261)
T ss_pred EEeCCHHHHHhCCCCHHHH
Confidence 9999999998776655444
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=262.04 Aligned_cols=184 Identities=16% Similarity=0.218 Sum_probs=153.8
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
..++++|+.++| |...+ |++||++.++|+++.|||.|||||||+|+||+=+.. +.|.|.++|+.+.-
T Consensus 5 ~~l~v~dlHK~~--G~~eV----LKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G 78 (256)
T COG4598 5 NALEVEDLHKRY--GEHEV----LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDG 78 (256)
T ss_pred cceehhHHHhhc--ccchh----hcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCC
Confidence 468899999988 55566 999999999999999999999999999999998888 99999999987641
Q ss_pred ------------CCccEEEEeccchhhhccCCcccccccc--------cCCHHH----HHHHHHHhc---------ccCC
Q 024032 138 ------------SSHTITMYMEEHNVMRSLQSGFCVYDSR--------GFNYNR----VHEGLEELS---------SWMS 184 (273)
Q Consensus 138 ------------~~~~i~~v~q~~~~~~~~~~~~tv~en~--------~~~~~~----~~~~l~~~~---------~~LS 184 (273)
+|.+.++|||..+++.++ ||.||. +.++.+ ++..|..++ ..||
T Consensus 79 ~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHm----tvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LS 154 (256)
T COG4598 79 QLKPADKRQLQRLRTRLGMVFQHFNLWSHM----TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLS 154 (256)
T ss_pred CeeeCCHHHHHHHHHHhhHhhhhcchhHHH----HHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccC
Confidence 345689999999987665 999982 334433 344455555 7899
Q ss_pred HHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
|||+||. |+ +.+|+++|+|||||+|||+ ..++.++++ |+|++++ ..+.+++++++|.|-++
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~ 233 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIFLHQGKIEEE 233 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhHHHhhhhheEEeecceeccc
Confidence 9999986 44 6899999999999999999 456778877 9999999 44689999999999999
Q ss_pred cChhhhccChhhH
Q 024032 247 DATKRLFSAPGLR 259 (273)
Q Consensus 247 g~~~~l~~~~~l~ 259 (273)
|+|+++|.+|.-.
T Consensus 234 G~P~qvf~nP~S~ 246 (256)
T COG4598 234 GPPEQVFGNPQSP 246 (256)
T ss_pred CChHHHhcCCCCH
Confidence 9999999877544
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=269.00 Aligned_cols=181 Identities=18% Similarity=0.227 Sum_probs=144.4
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC-
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~- 137 (273)
.+++++|+++.|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~--~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (251)
T PRK14270 3 IKMESKNLNLWYG--EKQA----LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK 76 (251)
T ss_pred cEEEEEEeEEEEC--Ceee----eeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccc
Confidence 3689999999984 4556 999999999999999999999999999999999874 58999999998742
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSEG 186 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSgG 186 (273)
.++.+++++|++.++ ..|+++|..+ .. +++.++++.++ ..||+|
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 151 (251)
T PRK14270 77 DVDVVELRKRVGMVFQKPNPF-----PMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGG 151 (251)
T ss_pred cccHHHHHhheEEEecCCCcC-----CCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHH
Confidence 246799999997643 3588887421 11 22334444432 679999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
||||. |+ +.+|++|||||||+|||+. +.++++.+ +.|||++ .+||++++|++|++++.|+
T Consensus 152 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~ 229 (251)
T PRK14270 152 QQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNK 229 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCC
Confidence 99986 33 7899999999999999999 33555544 5788888 5689999999999999999
Q ss_pred hhhhccChhh
Q 024032 249 TKRLFSAPGL 258 (273)
Q Consensus 249 ~~~l~~~~~l 258 (273)
+++++..+..
T Consensus 230 ~~~~~~~~~~ 239 (251)
T PRK14270 230 TEKIFLEPQK 239 (251)
T ss_pred HHHHhcCCCC
Confidence 9999876543
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=295.27 Aligned_cols=178 Identities=13% Similarity=0.181 Sum_probs=146.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
+++++|++++|. ++++ |+++||+|.+|+++||+||||||||||+|+|+|+++ ++|+|.++|.++.. .
T Consensus 4 ~i~~~~l~~~~~--~~~~----l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 77 (501)
T PRK10762 4 LLQLKGIDKAFP--GVKA----LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQ 77 (501)
T ss_pred eEEEeeeEEEeC--CeEE----eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 689999999994 4567 999999999999999999999999999999999998 99999999998743 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-----------CH----HHHHHHHHHhc---------ccCCHHHHHHH---
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-----------NY----NRVHEGLEELS---------SWMSEGVHHNQ--- 191 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-----------~~----~~~~~~l~~~~---------~~LSgGqkq~~--- 191 (273)
++.+++++|++.+ +..+||+||..+ +. +++.+.++.++ .+||||||||.
T Consensus 78 ~~~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 78 EAGIGIIHQELNL----IPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred hCCEEEEEcchhc----cCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHH
Confidence 4569999998765 445588887321 11 23556666665 68999999987
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
++ +.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+++..|+++++..
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ-GRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 33 7899999999999999999 335666554 8899988 5689999999999999998887643
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=266.73 Aligned_cols=180 Identities=20% Similarity=0.321 Sum_probs=146.2
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i 142 (273)
+++++++++|. ++++ ++++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.+
T Consensus 1 l~~~~l~~~~~--~~~i----l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i 74 (232)
T cd03300 1 IELENVSKFYG--GFVA----LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPV 74 (232)
T ss_pred CEEEeEEEEeC--Ceee----eccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcce
Confidence 46899999984 4567 999999999999999999999999999999999999 99999999998753 34678
Q ss_pred EEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
++++|++.. +..+|+.+|..+ . .+.+.++++.++ ..||+||+||. |+ +.+|+
T Consensus 75 ~~~~q~~~~----~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (232)
T cd03300 75 NTVFQNYAL----FPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK 150 (232)
T ss_pred EEEeccccc----CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999998775 334588887321 1 123445556554 67999999986 33 79999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
++||||||+|||+. +.++++.++.|.|||++ ..||++++|++|++++.|++++++..+
T Consensus 151 llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~ 222 (232)
T cd03300 151 VLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222 (232)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCC
Confidence 99999999999999 33555555448899988 468999999999999999988887543
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=294.41 Aligned_cols=192 Identities=21% Similarity=0.228 Sum_probs=157.2
Q ss_pred CCceEEEEEEEEeecCC-----eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeC--
Q 024032 64 DGLNELRHKFLSYRSGD-----FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS-- 135 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~-----~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i-- 135 (273)
+..++++|+++.|...+ ..-.+.|+++|||++++||++||||+||||||||.|+|+|+++ ++|.|.++|.++
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 45788999999998522 1101256999999999999999999999999999999999999 999999999873
Q ss_pred -----CCCCccEEEEeccchhhhccCCccccccccc--------C----CHHHHHHHHHHhc----------ccCCHHHH
Q 024032 136 -----GNSSHTITMYMEEHNVMRSLQSGFCVYDSRG--------F----NYNRVHEGLEELS----------SWMSEGVH 188 (273)
Q Consensus 136 -----~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~--------~----~~~~~~~~l~~~~----------~~LSgGqk 188 (273)
...++++-++||++... +.+.+||.++.. . ..+++.+.++.++ .+||||||
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~S--LnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQr 435 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSS--LNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQR 435 (539)
T ss_pred ccchhhhhhhheEEEEeCcccc--cCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchh
Confidence 12456788999988642 345668887621 1 1234556666666 88999999
Q ss_pred HHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChh
Q 024032 189 HNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATK 250 (273)
Q Consensus 189 q~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~ 250 (273)
||. |+ +.+|++|++|||||+||+. ++++++.++.|.|.++| .+||||+||++|+|++.|+.+
T Consensus 436 QRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~ 515 (539)
T COG1123 436 QRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTE 515 (539)
T ss_pred HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHH
Confidence 987 44 7899999999999999999 66788888889999999 678999999999999999999
Q ss_pred hhccChh
Q 024032 251 RLFSAPG 257 (273)
Q Consensus 251 ~l~~~~~ 257 (273)
++++.|.
T Consensus 516 ~v~~~p~ 522 (539)
T COG1123 516 KVFENPQ 522 (539)
T ss_pred HHhcCCC
Confidence 9998754
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=295.23 Aligned_cols=184 Identities=13% Similarity=0.163 Sum_probs=148.6
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc---CccEEEECCeeCCC----
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~---~~G~I~i~g~~i~~---- 137 (273)
.+++++|++++|. ++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.++..
T Consensus 4 ~~l~~~nl~~~~~--~~~i----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 77 (506)
T PRK13549 4 YLLEMKNITKTFG--GVKA----LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIR 77 (506)
T ss_pred ceEEEeeeEEEeC--CeEe----ecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHH
Confidence 3689999999984 4567 999999999999999999999999999999999987 49999999998753
Q ss_pred --CCccEEEEeccchhhhccCCcccccccccC----------C----HHHHHHHHHHhc---------ccCCHHHHHHH-
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSRGF----------N----YNRVHEGLEELS---------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~~~----------~----~~~~~~~l~~~~---------~~LSgGqkq~~- 191 (273)
.++.++|++|++.+ +..+|++||..+ + .+++.++++.++ .+||||||||.
T Consensus 78 ~~~~~~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~ 153 (506)
T PRK13549 78 DTERAGIAIIHQELAL----VKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVE 153 (506)
T ss_pred HHHHCCeEEEEecccc----CCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHH
Confidence 23569999999765 344588887321 1 124556677665 68999999987
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|+ +.+|++|||||||++||+. +.+.++.++ |.|||++ .+||++++|++|+++..|+++++..
T Consensus 154 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 232 (506)
T PRK13549 154 IAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAH-GIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE 232 (506)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCH
Confidence 33 7899999999999999999 345566544 8899998 5689999999999999999887754
Q ss_pred ChhhH
Q 024032 255 APGLR 259 (273)
Q Consensus 255 ~~~l~ 259 (273)
...+.
T Consensus 233 ~~~~~ 237 (506)
T PRK13549 233 DDIIT 237 (506)
T ss_pred HHHHH
Confidence 33333
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=267.51 Aligned_cols=179 Identities=22% Similarity=0.302 Sum_probs=140.4
Q ss_pred eEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 67 NELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 67 i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
++++|+++.|..+ ++++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .+
T Consensus 1 l~i~~l~~~~~~~~~~~~----l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPI----LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLR 76 (238)
T ss_pred CeEEEEEEecCCCCCccc----eeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHH
Confidence 4689999999643 2456 999999999999999999999999999999999999 99999999988743 24
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-----CHHHHHHHH---------HHh-----------cccCCHHHHHHH---
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHEGL---------EEL-----------SSWMSEGVHHNQ--- 191 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~~l---------~~~-----------~~~LSgGqkq~~--- 191 (273)
+.++|++|++.++ ..|++||..+ ..+.+.+.+ +.+ ..+|||||+||.
T Consensus 77 ~~i~~~~q~~~~~-----~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 151 (238)
T cd03249 77 SQIGLVSQEPVLF-----DGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIA 151 (238)
T ss_pred hhEEEECCchhhh-----hhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHH
Confidence 5699999987643 2488887422 122222221 221 157999999986
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
|+ +.+|++|||||||++||+. +.++.+. + |.|||++ ..||++++|++|++++.++.+++....
T Consensus 152 ~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 152 RALLRNPKILLLDEATSALDAESEKLVQEALDRAM-K-GRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 33 7899999999999999999 3344444 3 8899888 468999999999999999988886544
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=270.79 Aligned_cols=183 Identities=19% Similarity=0.249 Sum_probs=145.9
Q ss_pred CCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCC
Q 024032 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (273)
Q Consensus 63 ~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~ 136 (273)
....++++|++++|. ++++ |+++||++++||++||+||||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 17 ~~~~l~~~nl~~~~~--~~~i----l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 17 EEIALSTKDLHVYYG--KKEA----IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred CCeEEEEeeEEEEEC--Ceee----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 445799999999994 4667 999999999999999999999999999999999984 6999999999874
Q ss_pred C-------CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCC
Q 024032 137 N-------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMS 184 (273)
Q Consensus 137 ~-------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LS 184 (273)
. .++.++|++|++.++ ..|+++|..+ .. +.+.++++.++ .+||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~~~-----~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS 165 (267)
T PRK14237 91 RKEINVYEMRKHIGMVFQRPNPF-----AKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLS 165 (267)
T ss_pred cccCChHHHhcceEEEecCCccc-----cccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCC
Confidence 2 356799999987643 2488887422 11 22333444432 6799
Q ss_pred HHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
|||+||. |+ +++|++|||||||++||+. +.++++. + +.|||++ .+||++++|++|++++.
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQQAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999986 33 7899999999999999999 3345553 3 6888888 56899999999999999
Q ss_pred cChhhhccChhh
Q 024032 247 DATKRLFSAPGL 258 (273)
Q Consensus 247 g~~~~l~~~~~l 258 (273)
|++++++..+..
T Consensus 244 g~~~~~~~~~~~ 255 (267)
T PRK14237 244 DKTRNIFTNPKL 255 (267)
T ss_pred CCHHHHhcCCCc
Confidence 999999865543
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=293.14 Aligned_cols=189 Identities=18% Similarity=0.220 Sum_probs=153.1
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C----ccEEEECCeeCCC--
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R----SGLVLFAQTSSGN-- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~----~G~I~i~g~~i~~-- 137 (273)
.+++++|++++|...+.++ .+++||||+|.+||++||||.|||||||+.++|.|+++ . +|+|.++|+++..
T Consensus 4 ~lL~V~nL~v~~~~~~~~~--~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~ 81 (539)
T COG1123 4 PLLEVENLTVEFATDGGRV--PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLS 81 (539)
T ss_pred ceEEEeceEEEEecCCcce--eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCC
Confidence 3799999999998654443 34999999999999999999999999999999999998 6 8999999997642
Q ss_pred -------CCccEEEEeccchhhhccCCccccccc--------ccC----CHHHHHHHHHHhc-----------ccCCHHH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDS--------RGF----NYNRVHEGLEELS-----------SWMSEGV 187 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en--------~~~----~~~~~~~~l~~~~-----------~~LSgGq 187 (273)
..++|+++||++... +.+.+||.+- ... ..+++.+.++.++ .+|||||
T Consensus 82 ~~~~r~~rg~~Ia~i~Q~p~~s--lnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~ 159 (539)
T COG1123 82 EREMRKLRGKRIAMIFQDPMTS--LNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGM 159 (539)
T ss_pred HHHHHHhccccEEEEecCchhh--cCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchH
Confidence 347899999998642 1222344332 111 2334555666665 6899999
Q ss_pred HHHHH----hcCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQR----CLRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~r----~l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
|||.. ++.+|++||+||||++||+. ++++++.++.|+++|+| .+||||+||.+|++++.|++
T Consensus 160 rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~ 239 (539)
T COG1123 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT 239 (539)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCH
Confidence 99872 27899999999999999999 55778888889999999 67899999999999999999
Q ss_pred hhhccChh
Q 024032 250 KRLFSAPG 257 (273)
Q Consensus 250 ~~l~~~~~ 257 (273)
++++++|.
T Consensus 240 ~~i~~~p~ 247 (539)
T COG1123 240 EEILSNPQ 247 (539)
T ss_pred HHHHhccC
Confidence 99997653
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=298.84 Aligned_cols=193 Identities=21% Similarity=0.231 Sum_probs=153.3
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchhhhc----------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCC
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMERLAL----------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPV 98 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~----------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~G 98 (273)
+..+......++.+.++.+|+.++++.++... ....+.++++||+|+|+.+ +++ |+|+||++++|
T Consensus 287 ~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~v----L~~isl~i~~G 361 (529)
T TIGR02868 287 FAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS-PPV----LDGVSLDLPPG 361 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCC-Cce----eecceEEEcCC
Confidence 44555556677889999999999987654210 0112359999999999643 356 99999999999
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCccEEEEeccchhhhccCCcccccccc-----cCC
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFN 168 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~ 168 (273)
+++||+||||||||||+|+|+|+++ ++|+|.++|.++.+ +|+.+++|+|++.+ |+.|++||. ..+
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~l-----F~~TI~eNI~~g~~~~~ 436 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHL-----FDTTVRDNLRLGRPDAT 436 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCccc-----ccccHHHHHhccCCCCC
Confidence 9999999999999999999999999 99999999998864 56789999999985 455999993 346
Q ss_pred HHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHH-HHHHh-
Q 024032 169 YNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSP-KYVLR- 220 (273)
Q Consensus 169 ~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l-~~l~~- 220 (273)
++++.++++.++ ..||||||||. |+ +++|++||||||||+||+. +.+ +.+.+
T Consensus 437 ~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 437 DEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 677888887765 46999999986 55 8999999999999999999 222 22322
Q ss_pred cCCcEEEEcee
Q 024032 221 RVDFAMVVSNI 231 (273)
Q Consensus 221 ~~g~tiiiv~~ 231 (273)
..++|+|+|.|
T Consensus 517 ~~~~TvIiItH 527 (529)
T TIGR02868 517 LSGKTVVVITH 527 (529)
T ss_pred cCCCEEEEEec
Confidence 12789998844
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=267.47 Aligned_cols=179 Identities=20% Similarity=0.294 Sum_probs=142.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~-- 137 (273)
.++++|++++|+ ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~--~~~~----l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~ 77 (251)
T PRK14251 4 IISAKDVHLSYG--NYEA----LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77 (251)
T ss_pred eEEEEeeEEEEC--Ceee----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence 689999999984 4566 999999999999999999999999999999999984 59999999998742
Q ss_pred -----CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCHHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.+++++|++.++ ..|+++|..+ .. +.+.++++.++ ..|||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 152 (251)
T PRK14251 78 MDLVELRKEVGMVFQQPTPF-----PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQ 152 (251)
T ss_pred chHHHhhccEEEEecCCccC-----CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHH
Confidence 356799999987643 3588887321 11 22334444322 5799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|+++..|++
T Consensus 153 ~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~ 230 (251)
T PRK14251 153 QQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPT 230 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCH
Confidence 9986 33 7899999999999999999 33455533 6888888 46899999999999999999
Q ss_pred hhhccChh
Q 024032 250 KRLFSAPG 257 (273)
Q Consensus 250 ~~l~~~~~ 257 (273)
++++..+.
T Consensus 231 ~~~~~~~~ 238 (251)
T PRK14251 231 EEMFIAPK 238 (251)
T ss_pred HHHHhCCC
Confidence 99876543
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=272.22 Aligned_cols=180 Identities=22% Similarity=0.321 Sum_probs=143.0
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
...++++|++++|+ ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 11 ~~~l~i~nl~~~~~--~~~i----l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~ 84 (269)
T PRK14259 11 NIIISLQNVTISYG--TFEA----VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD 84 (269)
T ss_pred CceEEEEeEEEEEC--CEEE----EcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 45799999999984 4566 999999999999999999999999999999999974 68999999998641
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccC-------C---HHHHHHHHHHhc-------------ccCCHHH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N---YNRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~---~~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.++|++|++.++ ..|++||..+ . .+.+.++++.++ .+|||||
T Consensus 85 ~~~~~~~~~~~i~~v~q~~~l~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 159 (269)
T PRK14259 85 PRVDPVEVRRRIGMVFQQPNPF-----PKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQ 159 (269)
T ss_pred ccCCHHHHhhceEEEccCCccc-----hhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHH
Confidence 345799999988643 2388887421 1 123344455442 5699999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC---------
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKA--------- 240 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~--------- 240 (273)
|||. |+ +.+|++|||||||++||+. +.++++. + +.|||++ .+||++++|++
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g 237 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-K-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGG 237 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEecccccccccc
Confidence 9986 33 7899999999999999999 3345553 3 6888888 56899999996
Q ss_pred --CeEeeecChhhhccCh
Q 024032 241 --GDSKPLDATKRLFSAP 256 (273)
Q Consensus 241 --G~i~~~g~~~~l~~~~ 256 (273)
|++++.|++++++..+
T Consensus 238 ~~g~~~~~~~~~~~~~~~ 255 (269)
T PRK14259 238 KVGYLVEFNETKKIFNSP 255 (269)
T ss_pred ccceEEEeCCHHHHHhCc
Confidence 6789999999998654
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=268.92 Aligned_cols=183 Identities=18% Similarity=0.173 Sum_probs=142.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee-----CCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS-----SGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~-----i~~-- 137 (273)
.++++|++++|+ +..+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|++ +..
T Consensus 3 ~l~~~~l~~~~~--~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (253)
T TIGR02323 3 LLQVSGLSKSYG--GGKG----CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLS 76 (253)
T ss_pred eEEEeeeEEEeC--CceE----eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCC
Confidence 689999999994 3456 999999999999999999999999999999999999 99999999876 532
Q ss_pred -------CCccEEEEeccchhhhccCCccccccccc------------CCHHHHHHHHHHhc----------ccCCHHHH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRG------------FNYNRVHEGLEELS----------SWMSEGVH 188 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~------------~~~~~~~~~l~~~~----------~~LSgGqk 188 (273)
.++.+++++|++... +....++.+|.. ...+.+.+.++.++ ..|||||+
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~ 154 (253)
T TIGR02323 77 EAERRRLMRTEWGFVHQNPRDG--LRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQ 154 (253)
T ss_pred HHHHHHhhhcceEEEEeCcccc--cCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHH
Confidence 124689999986421 123334444421 01234455555554 56999999
Q ss_pred HHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChh
Q 024032 189 HNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATK 250 (273)
Q Consensus 189 q~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~ 250 (273)
||. |+ +.+|++|||||||++||+. +.++++.++.|.|||++ ..||++++|++|+++..|+++
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~ 234 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTD 234 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHH
Confidence 986 33 7999999999999999999 33455544448899999 468999999999999999999
Q ss_pred hhccCh
Q 024032 251 RLFSAP 256 (273)
Q Consensus 251 ~l~~~~ 256 (273)
++...+
T Consensus 235 ~~~~~~ 240 (253)
T TIGR02323 235 QVLDDP 240 (253)
T ss_pred HHhcCC
Confidence 887543
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=267.84 Aligned_cols=178 Identities=17% Similarity=0.256 Sum_probs=142.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~-- 137 (273)
+++++|+++.|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~--~~~~----l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~ 76 (250)
T PRK14262 3 IIEIENFSAYYG--EKKA----VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76 (250)
T ss_pred eEEEEeeEEEeC--Ccee----EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence 689999999994 4566 999999999999999999999999999999999975 68999999988742
Q ss_pred -----CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCHHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.+++++|++.++ ..|+++|..+ .. +.+.++++.++ ..|||||
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~-----~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 151 (250)
T PRK14262 77 LDVTEYRKKVGMVFQKPTPF-----PMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQ 151 (250)
T ss_pred hhHHHhhhhEEEEecCCccC-----cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHH
Confidence 356799999987643 2588887321 11 12333444332 6799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|+++..|++
T Consensus 152 ~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (250)
T PRK14262 152 QQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPT 229 (250)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 9986 33 7899999999999999999 33445543 6888888 56899999999999999999
Q ss_pred hhhccCh
Q 024032 250 KRLFSAP 256 (273)
Q Consensus 250 ~~l~~~~ 256 (273)
+++...+
T Consensus 230 ~~~~~~~ 236 (250)
T PRK14262 230 REIVERP 236 (250)
T ss_pred HHHHhCC
Confidence 9987544
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=268.11 Aligned_cols=179 Identities=16% Similarity=0.227 Sum_probs=141.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-----ccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-----~G~I~i~g~~i~~-- 137 (273)
+++++|++++|. ++++ |+++||+|++||+++|+||||||||||+|+|+|+++ + +|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 4 LLSAQDVNIYYG--DKQA----VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEeeeEEEEC--CEEe----eccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 588999999984 4567 999999999999999999999999999999999986 4 7999999998742
Q ss_pred -----CCccEEEEeccchhhhccCCcccccccccC--------CHHH----HHHHHHHh-------------cccCCHHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NYNR----VHEGLEEL-------------SSWMSEGV 187 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~~~----~~~~l~~~-------------~~~LSgGq 187 (273)
.++.++|++|++.+ +...|+.||... ..+. +.+.++.+ ...|||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~----~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 153 (252)
T PRK14272 78 VDPVAMRRRVGMVFQKPNP----FPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQ 153 (252)
T ss_pred cCHHHhhceeEEEeccCcc----CcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHH
Confidence 34579999999775 344588887321 1221 22222222 16799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+||. |+ +++|++|||||||++||+. +.++++. + +.|||++ .+||++++|++|++++.|++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPT 231 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9986 33 7899999999999999999 3345554 3 6888888 46899999999999999999
Q ss_pred hhhccCh
Q 024032 250 KRLFSAP 256 (273)
Q Consensus 250 ~~l~~~~ 256 (273)
++++..+
T Consensus 232 ~~~~~~~ 238 (252)
T PRK14272 232 DQLFTNP 238 (252)
T ss_pred HHHHhCc
Confidence 9987654
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=269.49 Aligned_cols=179 Identities=20% Similarity=0.289 Sum_probs=142.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCC---
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG--- 136 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~--- 136 (273)
.++++|++++|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 4 ~l~i~~v~~~~~--~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYYG--SFHA----VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEEC--CEee----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 689999999984 3556 999999999999999999999999999999999985 4999999998863
Q ss_pred ----CCCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCHHH
Q 024032 137 ----NSSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 137 ----~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSgGq 187 (273)
..++.+++++|++.++ ...|+++|..+ .. +.+.++++.++ .+|||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~----~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 78 VDPVAVRRTIGMVFQRPNPF----PTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQ 153 (258)
T ss_pred cChHHHhcceEEEccccccC----CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHH
Confidence 1346799999987753 34588887321 11 22344444432 6799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEe------CCeE
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALK------AGDS 243 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~------~G~i 243 (273)
+||. |+ +.+|++|||||||++||+. +.++++. + +.|||++ .+||++++|+ +|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i 231 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRL 231 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceE
Confidence 9987 33 7899999999999999999 3345554 3 6788888 5689999997 7999
Q ss_pred eeecChhhhccCh
Q 024032 244 KPLDATKRLFSAP 256 (273)
Q Consensus 244 ~~~g~~~~l~~~~ 256 (273)
++.|++++++..+
T Consensus 232 ~~~~~~~~~~~~~ 244 (258)
T PRK14241 232 VEIDDTEKIFSNP 244 (258)
T ss_pred EecCCHHHHHhCc
Confidence 9999999987654
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=266.20 Aligned_cols=175 Identities=20% Similarity=0.200 Sum_probs=139.3
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----C
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----S 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~ 138 (273)
..++++|++++|. ++++ ++++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .
T Consensus 6 ~~i~~~~l~~~~~--~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (225)
T PRK10247 6 PLLQLQNVGYLAG--DAKI----LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79 (225)
T ss_pred ceEEEeccEEeeC--Ccee----eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHH
Confidence 3689999999984 4567 999999999999999999999999999999999998 99999999988753 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC---------CHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cC
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF---------NYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~---------~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~ 195 (273)
++.+++++|++.++ ..|++||..+ ..+.+.+.++.++ .+||+||+||. |+ ++
T Consensus 80 ~~~i~~~~q~~~l~-----~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 80 RQQVSYCAQTPTLF-----GDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred HhccEEEecccccc-----cccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 46789999987643 3488887421 1234455666554 67999999986 33 79
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEe-CCeEeeecChh
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALK-AGDSKPLDATK 250 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~-~G~i~~~g~~~ 250 (273)
+|+++||||||++||+. +.++++.++.|.|||++ ..||++++|+ ++..+++|+++
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999 33555554448899888 4589999994 56666777654
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=267.86 Aligned_cols=181 Identities=18% Similarity=0.233 Sum_probs=143.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-----ccEEEECCeeCC---
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSG--- 136 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-----~G~I~i~g~~i~--- 136 (273)
.++++|+++.|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ . +|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 76 (249)
T PRK14253 3 KFNIENLDLFYG--ENQA----LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76 (249)
T ss_pred eEEEeccEEEEC--Ceee----eecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc
Confidence 588999999984 4566 999999999999999999999999999999999987 4 899999998874
Q ss_pred ---CCCccEEEEeccchhhhccCCcccccccccC-------C-H----HHHHHHHHHhc-------------ccCCHHHH
Q 024032 137 ---NSSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N-Y----NRVHEGLEELS-------------SWMSEGVH 188 (273)
Q Consensus 137 ---~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~-~----~~~~~~l~~~~-------------~~LSgGqk 188 (273)
..++.++|++|++.++ ..|+.+|..+ . . +.+.+.++.++ ..|||||+
T Consensus 77 ~~~~~~~~i~~~~q~~~~~-----~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~ 151 (249)
T PRK14253 77 DVADLRIKVGMVFQKPNPF-----PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQ 151 (249)
T ss_pred chHHHHhheeEEecCCCcC-----cccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHH
Confidence 1356799999987643 2578777321 1 1 12233343332 57999999
Q ss_pred HHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChh
Q 024032 189 HNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATK 250 (273)
Q Consensus 189 q~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~ 250 (273)
||. |+ +.+|++|||||||+|||+. +.++++.+ +.|||++ .+||++++|++|+++..|+++
T Consensus 152 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~ 229 (249)
T PRK14253 152 QRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQ 229 (249)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 986 33 7899999999999999999 34555544 5788888 568999999999999999999
Q ss_pred hhccChhhH
Q 024032 251 RLFSAPGLR 259 (273)
Q Consensus 251 ~l~~~~~l~ 259 (273)
++...+...
T Consensus 230 ~~~~~~~~~ 238 (249)
T PRK14253 230 VIFSNPKDD 238 (249)
T ss_pred HHHcCCCCh
Confidence 887654443
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=267.59 Aligned_cols=181 Identities=18% Similarity=0.205 Sum_probs=143.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-----CccEEEECCeeCCC---
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-----RSGLVLFAQTSSGN--- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-----~~G~I~i~g~~i~~--- 137 (273)
.++++|++++| ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~---~~~i----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 76 (254)
T PRK10418 4 QIELRNIALQA---AQPL----VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCAL 76 (254)
T ss_pred EEEEeCeEEEe---ccce----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccccc
Confidence 68999999998 2456 999999999999999999999999999999999975 58999999998753
Q ss_pred CCccEEEEeccchh-hhccCCcccccccc-------cC--CHHHHHHHHHHhc------------ccCCHHHHHHH---H
Q 024032 138 SSHTITMYMEEHNV-MRSLQSGFCVYDSR-------GF--NYNRVHEGLEELS------------SWMSEGVHHNQ---R 192 (273)
Q Consensus 138 ~~~~i~~v~q~~~~-~~~~~~~~tv~en~-------~~--~~~~~~~~l~~~~------------~~LSgGqkq~~---r 192 (273)
.++.++|++|++.. + ....|+.+|. +. ..+.+.+.++.++ ..|||||+||. |
T Consensus 77 ~~~~i~~v~q~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~lar 153 (254)
T PRK10418 77 RGRKIATIMQNPRSAF---NPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAL 153 (254)
T ss_pred ccceEEEEecCCcccc---CccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHH
Confidence 23569999999742 2 1123544431 11 2234556666654 56999999986 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+ +.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|+++..|+++++++.+
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 232 (254)
T PRK10418 154 ALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAP 232 (254)
T ss_pred HHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCC
Confidence 3 7899999999999999999 34555655448899988 468999999999999999999987654
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=263.03 Aligned_cols=172 Identities=17% Similarity=0.232 Sum_probs=136.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
.++++|++++|+.+++++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .+
T Consensus 2 ~l~~~~l~~~~~~~~~~~----l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPV----LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred cEEEEEEEEecCCCCccc----ccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHh
Confidence 478999999996544456 999999999999999999999999999999999999 99999999998742 45
Q ss_pred ccEEEEeccchhhhccCCcccccccccC----CHHHHHHHHHHh--------------------cccCCHHHHHHH---H
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF----NYNRVHEGLEEL--------------------SSWMSEGVHHNQ---R 192 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~----~~~~~~~~l~~~--------------------~~~LSgGqkq~~---r 192 (273)
+.+++++|++.++ ..|++||... ..+++.++++.+ ...||+||+||. |
T Consensus 78 ~~i~~~~q~~~l~-----~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~lar 152 (221)
T cd03244 78 SRISIIPQDPVLF-----SGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLAR 152 (221)
T ss_pred hhEEEECCCCccc-----cchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHH
Confidence 6799999997742 3488887432 233333333322 167999999986 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecC
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~ 248 (273)
+ +.+|+++||||||++||+. +.++++.+ +.|||++ ..||++++|++|++++.|+
T Consensus 153 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 153 ALLRKSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 3 7899999999999999999 23444432 6788888 4489999999999988765
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=266.07 Aligned_cols=179 Identities=18% Similarity=0.257 Sum_probs=141.6
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC-
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~- 137 (273)
..++++|++++|+ ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 5 ~~i~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 78 (253)
T PRK14261 5 IILSTKNLNLWYG--EKHA----LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDS 78 (253)
T ss_pred ceEEEeeeEEEEC--Ceee----eeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 3689999999984 4566 999999999999999999999999999999999864 27999999998743
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSEG 186 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSgG 186 (273)
.++.++|++|++.++ ..||+||..+ .. +.+.++++.++ ..||+|
T Consensus 79 ~~~~~~~~~~i~~~~q~~~~~-----~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 153 (253)
T PRK14261 79 GADVVALRRKIGMVFQRPNPF-----PKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGG 153 (253)
T ss_pred ccchhhhhceEEEEecCCccC-----cccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHH
Confidence 245689999988743 2388887322 11 12333343332 579999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
|+||. |+ +.+|+++||||||+|||+. +.++.+.+ +.|||++ ..||++++|++|+++..|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14261 154 QQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDK 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCC
Confidence 99986 33 7899999999999999999 33455544 5788888 5689999999999999999
Q ss_pred hhhhccCh
Q 024032 249 TKRLFSAP 256 (273)
Q Consensus 249 ~~~l~~~~ 256 (273)
+++++..+
T Consensus 232 ~~~~~~~~ 239 (253)
T PRK14261 232 TTQIFENP 239 (253)
T ss_pred HHHHHhCC
Confidence 99987544
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=270.20 Aligned_cols=183 Identities=18% Similarity=0.226 Sum_probs=145.2
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
...++++|++++|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 23 ~~~l~~~nl~~~~~--~~~i----l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 23 QTALEVRNLNLFYG--DKQA----LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred CcEEEEEEEEEEEC--CeeE----eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 45799999999994 4567 999999999999999999999999999999999975 59999999998742
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc-------------ccCCH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS-------------SWMSE 185 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~-------------~~LSg 185 (273)
.++.++|++|++.++ . .|+++|..+ . .+.+.++++.++ ..|||
T Consensus 97 ~~~~~~~~~~~i~~v~q~~~l~----~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 171 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQRPNPF----P-KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSG 171 (272)
T ss_pred cccCHHHHhccEEEEecCCccC----c-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCH
Confidence 356799999987643 2 378777321 1 122444444432 57999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
||+||. |+ +++|++|||||||+|||+. +.++++.+ +.|||++ .+||++++|++|+++..|
T Consensus 172 Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g 249 (272)
T PRK14236 172 GQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYG 249 (272)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecC
Confidence 999986 33 7899999999999999999 33555543 6788888 468999999999999999
Q ss_pred ChhhhccChhhH
Q 024032 248 ATKRLFSAPGLR 259 (273)
Q Consensus 248 ~~~~l~~~~~l~ 259 (273)
++++++..+...
T Consensus 250 ~~~~~~~~~~~~ 261 (272)
T PRK14236 250 DTDTLFTSPAKK 261 (272)
T ss_pred CHHHHhcCCCcH
Confidence 999987665443
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=266.85 Aligned_cols=181 Identities=17% Similarity=0.225 Sum_probs=142.4
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC-
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~- 137 (273)
.+++++|++++|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14255 4 KIITSSDVHLFYG--KFEA----LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAP 77 (252)
T ss_pred ceEEEEeEEEEEC--CeeE----EecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccc
Confidence 3689999999985 4567 999999999999999999999999999999999864 38999999998741
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSEG 186 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSgG 186 (273)
.++.+++++|++.++ ..|+++|..+ .. +.+.+.++.++ .+||+|
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~-----~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G 152 (252)
T PRK14255 78 NEDVVQLRKQVGMVFQQPNPF-----PFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGG 152 (252)
T ss_pred cccHHHhcCeEEEEECCCccC-----CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHH
Confidence 346799999987643 2478777321 11 12233333321 679999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
|+||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ ..||++++|++|+++..|+
T Consensus 153 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14255 153 QQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMHQASRISDKTAFFLTGNLIEFAD 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99986 33 7899999999999999999 33455544 5788888 4689999999999999999
Q ss_pred hhhhccChhh
Q 024032 249 TKRLFSAPGL 258 (273)
Q Consensus 249 ~~~l~~~~~l 258 (273)
+.+++.++..
T Consensus 231 ~~~~~~~~~~ 240 (252)
T PRK14255 231 TKQMFLNPKE 240 (252)
T ss_pred HHHHhcCCCC
Confidence 9999876543
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=296.35 Aligned_cols=199 Identities=16% Similarity=0.150 Sum_probs=157.5
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchhhhc-----cC-CCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEE
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMERLAL-----IA-PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITIL 102 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-----~~-~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~a 102 (273)
+..+......++.+..+.+|+.++++.++... .. ..+.++++|++|+|+.+++++ |+++||++++|++++
T Consensus 277 l~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~i----l~~i~l~i~~G~~~~ 352 (529)
T TIGR02857 277 LRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGLSVAYPGRRAPA----LRPVSFTVPPGERVA 352 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEEEEECCCCCccc----ccceeEEECCCCEEE
Confidence 34455556777888999999999987442211 00 123699999999997544567 999999999999999
Q ss_pred EEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHHH
Q 024032 103 LMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYNR 171 (273)
Q Consensus 103 ivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~ 171 (273)
|+||||||||||+|+|+|+++ ++|+|.++|.++.+ +++.+++++|++.+ |..|++||. ..++++
T Consensus 353 ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~l-----f~~ti~~Ni~~~~~~~~~~~ 427 (529)
T TIGR02857 353 LVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFL-----FAGTIAENIRLARPDASDAE 427 (529)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcc-----cCcCHHHHHhccCCCCCHHH
Confidence 999999999999999999999 99999999998864 56789999999884 456999993 235667
Q ss_pred HHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--H----HHHHHHhc
Q 024032 172 VHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--S----SPKYVLRR 221 (273)
Q Consensus 172 ~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~----~l~~l~~~ 221 (273)
+.++++.++ ..||||||||. |+ +++|+++||||||++||+. + .+..+.
T Consensus 428 i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-- 505 (529)
T TIGR02857 428 IRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-- 505 (529)
T ss_pred HHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--
Confidence 777776654 56999999986 44 8999999999999999999 2 233332
Q ss_pred CCcEEEEc-------eeCCEEEEE
Q 024032 222 VDFAMVVS-------NIAEIYKAL 238 (273)
Q Consensus 222 ~g~tiiiv-------~~ad~i~vl 238 (273)
.++|+|++ +.||+|++|
T Consensus 506 ~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 506 QGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCCEEEEEecCHHHHHhCCEEEeC
Confidence 27898888 458999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=264.28 Aligned_cols=177 Identities=16% Similarity=0.246 Sum_probs=139.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
.++++|++++|.. ++.+ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .+
T Consensus 2 ~l~~~~l~~~~~~-~~~~----l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (229)
T cd03254 2 EIEFENVNFSYDE-KKPV----LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLR 76 (229)
T ss_pred eEEEEEEEEecCC-CCcc----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHh
Confidence 4789999999852 2346 999999999999999999999999999999999999 99999999988753 35
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-----CHHHHHHHHHHh--------------------cccCCHHHHHHH---
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHEGLEEL--------------------SSWMSEGVHHNQ--- 191 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~~l~~~--------------------~~~LSgGqkq~~--- 191 (273)
+.++|++|++.++ ..|+++|..+ ....+.++++.+ ...||||||||.
T Consensus 77 ~~i~~~~q~~~~~-----~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la 151 (229)
T cd03254 77 SMIGVVLQDTFLF-----SGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIA 151 (229)
T ss_pred hhEEEecCCchhh-----hhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHH
Confidence 6799999987643 2378877321 223333322221 157999999986
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|+ +.+|++|||||||++||+. +.++.+. + +.|||++ ..||++++|++|+++..++.+++++
T Consensus 152 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 152 RAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 33 7899999999999999999 3344553 3 7899988 4589999999999999988877654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=268.17 Aligned_cols=185 Identities=18% Similarity=0.195 Sum_probs=146.7
Q ss_pred EEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----CCccE
Q 024032 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----SSHTI 142 (273)
Q Consensus 68 ~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~~~~i 142 (273)
+++|+++. .+ |+++||+|++|++++|+||||||||||+++|+|+++.+|+|.++|+++.. .++.+
T Consensus 2 ~~~~l~~~------~~----l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i 71 (248)
T PRK03695 2 QLNDVAVS------TR----LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHR 71 (248)
T ss_pred cccccchh------ce----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhhe
Confidence 46677763 14 99999999999999999999999999999999998888999999998753 23568
Q ss_pred EEEeccchhhhccCCcccccccccC------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC----
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LR---- 195 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~---- 195 (273)
+|++|++.. ++.+|+++|..+ . .+.+.++++.++ ..||||||||. ++ +.
T Consensus 72 ~~v~q~~~~----~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~ 147 (248)
T PRK03695 72 AYLSQQQTP----PFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147 (248)
T ss_pred EEecccCcc----CCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 999998764 344578876321 1 224556666655 77999999986 33 44
Q ss_pred ---CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 196 ---SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 196 ---~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|++++.|+++++...+.+
T Consensus 148 ~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 226 (248)
T PRK03695 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ-GIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENL 226 (248)
T ss_pred cCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhCchHH
Confidence 67999999999999999 345555544 8899998 56899999999999999999998877777
Q ss_pred HHHhCCceE
Q 024032 259 RKCSKISFC 267 (273)
Q Consensus 259 ~~~~~~~~~ 267 (273)
.+.|+.+..
T Consensus 227 ~~~~~~~~~ 235 (248)
T PRK03695 227 AQVFGVNFR 235 (248)
T ss_pred HHHhCCCeE
Confidence 888886544
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=284.92 Aligned_cols=170 Identities=22% Similarity=0.280 Sum_probs=139.2
Q ss_pred CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCe----eCCC--------C-CccEEE
Q 024032 79 GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT----SSGN--------S-SHTITM 144 (273)
Q Consensus 79 g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~----~i~~--------~-~~~i~~ 144 (273)
+...+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|+ ++.. . ++.++|
T Consensus 35 g~~~~----l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~ 110 (382)
T TIGR03415 35 GLVVG----VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSM 110 (382)
T ss_pred CCEEE----EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEE
Confidence 44555 999999999999999999999999999999999999 9999999996 3321 1 257999
Q ss_pred EeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
++|++.+++ .+|++||.. .+. +.+.++++.++ .+||||||||. |+ +.+|++|
T Consensus 111 vfQ~~~l~p----~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 111 VFQKFALMP----WLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred EECCCcCCC----CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999988643 459999842 222 34556677666 67999999987 33 7899999
Q ss_pred EEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 201 LMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 201 lLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
||||||++||+. +.+.++.++.++|||++ ++||+|++|++|++++.|++++++..+
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p 256 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNP 256 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCc
Confidence 999999999999 33555655558999999 568999999999999999999998654
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=270.30 Aligned_cols=183 Identities=16% Similarity=0.175 Sum_probs=145.5
Q ss_pred ceEEEEEEEEeecC-------CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC
Q 024032 66 LNELRHKFLSYRSG-------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g-------~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~ 137 (273)
+++++|+++.|..+ ++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~ 78 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTV----LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAK 78 (268)
T ss_pred eEEEeceEEEecCCccccccCceee----EeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccc
Confidence 58999999999631 3566 999999999999999999999999999999999998 99999999998753
Q ss_pred --------CCccEEEEeccchhhhccCCccccccccc--------CCH----HHHHHHHHHhc----------ccCCHHH
Q 024032 138 --------SSHTITMYMEEHNVMRSLQSGFCVYDSRG--------FNY----NRVHEGLEELS----------SWMSEGV 187 (273)
Q Consensus 138 --------~~~~i~~v~q~~~~~~~~~~~~tv~en~~--------~~~----~~~~~~l~~~~----------~~LSgGq 187 (273)
.++.++|++|++... +....|+.+|.. ... ..+.+.++.++ ..||+||
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 79 LNRAQRKAFRRDIQMVFQDSISA--VNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred cChhHHHHHHhcEEEEEcChhhc--cCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHH
Confidence 346799999987421 123346666521 111 23455565544 5699999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+||. |+ +.+|++|||||||++||+. +.++++.++.+.|+|++ .+||++++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9986 33 7999999999999999998 34556655447899888 46899999999999999999
Q ss_pred hhhcc
Q 024032 250 KRLFS 254 (273)
Q Consensus 250 ~~l~~ 254 (273)
++++.
T Consensus 237 ~~~~~ 241 (268)
T PRK10419 237 GDKLT 241 (268)
T ss_pred hhccC
Confidence 99863
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=264.23 Aligned_cols=179 Identities=16% Similarity=0.262 Sum_probs=144.8
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i 142 (273)
++++++++.|. + ++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.+
T Consensus 1 l~~~~l~~~~~--~-~~----l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i 73 (235)
T cd03299 1 LKVENLSKDWK--E-FK----LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI 73 (235)
T ss_pred CeeEeEEEEeC--C-ce----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCE
Confidence 46899999984 2 25 999999999999999999999999999999999999 99999999998754 34679
Q ss_pred EEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
++++|++.+ +..+|+.||..+ . .+.+.++++.++ ..|||||+||. |+ +.+|+
T Consensus 74 ~~~~q~~~~----~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 149 (235)
T cd03299 74 SYVPQNYAL----FPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK 149 (235)
T ss_pred EEEeecCcc----CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCC
Confidence 999998765 334588887321 1 123445566655 57999999986 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+++|||||+|||+. +.++++.++.|.|||++ ..||++++|++|++++.|+++++.+.+
T Consensus 150 llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 150 ILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 99999999999999 33455554448899888 468999999999999999998887653
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=254.87 Aligned_cols=150 Identities=17% Similarity=0.232 Sum_probs=126.3
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSH 140 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~ 140 (273)
++++|++++|+.+..++ ++++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++
T Consensus 1 i~~~~l~~~~~~~~~~~----l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (173)
T cd03246 1 LEVENVSFRYPGAEPPV----LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGD 76 (173)
T ss_pred CEEEEEEEEcCCCCCcc----eeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHh
Confidence 47899999996433446 999999999999999999999999999999999999 99999999998753 356
Q ss_pred cEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH----
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK---- 212 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~---- 212 (273)
.+++++|++.++ ..|++||. |||||+||. |+ +.+|++|||||||++||+.
T Consensus 77 ~i~~~~q~~~~~-----~~tv~~~l-----------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~ 134 (173)
T cd03246 77 HVGYLPQDDELF-----SGSIAENI-----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERA 134 (173)
T ss_pred heEEECCCCccc-----cCcHHHHC-----------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHH
Confidence 799999987642 24888765 999999986 33 7999999999999999999
Q ss_pred --HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeE
Q 024032 213 --SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDS 243 (273)
Q Consensus 213 --~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i 243 (273)
+.++++.++ |.|||++ ..||++++|++|++
T Consensus 135 l~~~l~~~~~~-~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 135 LNQAIAALKAA-GATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHHHHhC-CCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 345555544 8899988 56899999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=299.49 Aligned_cols=186 Identities=19% Similarity=0.222 Sum_probs=149.9
Q ss_pred CceEEEEEEEEeecC---------CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 65 GLNELRHKFLSYRSG---------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g---------~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
.+++++|++++|..+ +..+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|+++|++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~----l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~ 387 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHA----VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQR 387 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEE----EeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEE
Confidence 479999999999521 1345 999999999999999999999999999999999999 99999999998
Q ss_pred CCC--------CCccEEEEeccchhhhccCCccccccccc-------C-CH----HHHHHHHHHhc----------ccCC
Q 024032 135 SGN--------SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------F-NY----NRVHEGLEELS----------SWMS 184 (273)
Q Consensus 135 i~~--------~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~-~~----~~~~~~l~~~~----------~~LS 184 (273)
+.. .++.++|++|++.. .+...+||.+|.. . .. +++.+.++.++ .+||
T Consensus 388 i~~~~~~~~~~~~~~i~~v~Q~~~~--~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LS 465 (623)
T PRK10261 388 IDTLSPGKLQALRRDIQFIFQDPYA--SLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFS 465 (623)
T ss_pred CCcCCHHHHHHhcCCeEEEecCchh--hcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCC
Confidence 743 24579999998731 0234458877631 1 11 24556666655 6899
Q ss_pred HHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
||||||+ |+ +.+|++|||||||++||+. +++++++++.|.|||+| .+||+|++|++|++++.
T Consensus 466 gGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~ 545 (623)
T PRK10261 466 GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEI 545 (623)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999987 33 7899999999999999999 34566665558999999 56899999999999999
Q ss_pred cChhhhccCh
Q 024032 247 DATKRLFSAP 256 (273)
Q Consensus 247 g~~~~l~~~~ 256 (273)
|++++++.++
T Consensus 546 g~~~~i~~~p 555 (623)
T PRK10261 546 GPRRAVFENP 555 (623)
T ss_pred cCHHHHhcCC
Confidence 9999998654
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=267.26 Aligned_cols=180 Identities=17% Similarity=0.224 Sum_probs=142.5
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC---
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN--- 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~--- 137 (273)
-+++|+++.|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 6 ~~~~~l~~~~~--~~~~----l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 6 ASVKNLNLWYG--SKQI----LFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEeeeEEEEEC--Ceee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 47899999884 4566 999999999999999999999999999999999974 49999999988642
Q ss_pred ----CCccEEEEeccchhhhccCCcccccccccC---------C----HHHHHHHHHHhc-------------ccCCHHH
Q 024032 138 ----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF---------N----YNRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 ----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~---------~----~~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.++|++|++.+++ .|+.+|..+ . .+.+.++++.++ ..|||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~-----~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 154 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFP-----KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQ 154 (251)
T ss_pred chHHHhhhEEEEecCccccc-----CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHH
Confidence 3567999999976532 377776321 1 122344555543 4699999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
|||. |+ +.+|++|||||||++||+. +.++++. + +.|||++ .+||++++|++|++++.|++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (251)
T PRK14244 155 QQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTT 232 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCH
Confidence 9986 33 7899999999999999999 3345553 3 7899888 56899999999999999999
Q ss_pred hhhccChhhH
Q 024032 250 KRLFSAPGLR 259 (273)
Q Consensus 250 ~~l~~~~~l~ 259 (273)
++++..+...
T Consensus 233 ~~~~~~~~~~ 242 (251)
T PRK14244 233 QEIFKNPQSS 242 (251)
T ss_pred HHHhcCCCCh
Confidence 9998765443
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=261.00 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=135.4
Q ss_pred ceEEEEEEEEeecC--CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc----CccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS----RSGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g--~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~----~~G~I~i~g~~i~~-- 137 (273)
.+.++|++|.|+.+ ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i----l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~ 78 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPI----LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78 (202)
T ss_pred eEEEEccEEEeccCCCCcee----eeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch
Confidence 57899999999865 4556 999999999999999999999999999999999986 59999999998753
Q ss_pred --CCccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCH
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDL 211 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~ 211 (273)
.++.+++++|++.. ++.+||++|..+... .. .+.....||+||+||. |+ +++|++|||||||++||+
T Consensus 79 ~~~~~~i~~~~q~~~~----~~~~tv~~~l~~~~~-~~--~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~ 151 (202)
T cd03233 79 EKYPGEIIYVSEEDVH----FPTLTVRETLDFALR-CK--GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDS 151 (202)
T ss_pred hhhcceEEEEeccccc----CCCCcHHHHHhhhhh-hc--cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCH
Confidence 45679999998764 445699998543211 10 2333378999999986 33 789999999999999999
Q ss_pred H------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeCCeEeeec
Q 024032 212 K------SSPKYVLRRVDFAMVVS---------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 212 ~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~G~i~~~g 247 (273)
. +.++++.++.+.|++++ ..||++++|++|+++..|
T Consensus 152 ~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 152 STALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9 33555655435665554 458999999999998654
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=259.33 Aligned_cols=173 Identities=14% Similarity=0.189 Sum_probs=139.3
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----C
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----S 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~ 138 (273)
+.+++++++++|+.....+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .
T Consensus 5 ~~l~~~~l~~~~~~~~~~~----l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPV----LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CeEEEEEEEEEeCCCCccc----ccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 4689999999996433456 999999999999999999999999999999999999 99999999998742 3
Q ss_pred CccEEEEeccchhhhccCCccccccccc----CCHHHHHHHHHHhc---ccCCHHHHHHH---Hh-cCCCCEEEEcCcCC
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRG----FNYNRVHEGLEELS---SWMSEGVHHNQ---RC-LRSDDCALMKNDAE 207 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~----~~~~~~~~~l~~~~---~~LSgGqkq~~---r~-l~~p~iLlLDEPts 207 (273)
++.++|++|++.+ +..|+++|.. ...+++.++++ +. ..|||||+||. |+ +.+|++|||||||+
T Consensus 81 ~~~i~~v~q~~~~-----~~~tv~~~l~~~~~~~~~~~~~~l~-~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 154 (207)
T cd03369 81 RSSLTIIPQDPTL-----FSGTIRSNLDPFDEYSDEEIYGALR-VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATA 154 (207)
T ss_pred HhhEEEEecCCcc-----cCccHHHHhcccCCCCHHHHHHHhh-ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence 5679999999864 2348888743 23344455554 33 78999999986 33 78999999999999
Q ss_pred CCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecCh
Q 024032 208 IDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 208 ~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+||+. +.++++. + |.|+|++ ..||++++|++|++++.|++
T Consensus 155 ~LD~~~~~~l~~~l~~~~-~-~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 155 SIDYATDALIQKTIREEF-T-NSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred cCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999 3344443 3 7898888 34899999999999887753
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=270.44 Aligned_cols=182 Identities=18% Similarity=0.277 Sum_probs=143.2
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
..+++++|+++.|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 18 ~~~l~~~nl~~~~~--~~~~----l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~ 91 (274)
T PRK14265 18 HSVFEVEGVKVFYG--GFLA----LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYD 91 (274)
T ss_pred CceEEEeeEEEEeC--CeEE----EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccc
Confidence 34799999999984 4566 999999999999999999999999999999999975 38999999998741
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccCC----------HHHHHHHHHHhc-------------ccCCHHH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGFN----------YNRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~----------~~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.++|++|++.++ ..|+.+|..+. .+.+.++++.++ ..|||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~-----~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 166 (274)
T PRK14265 92 SQINSVKLRRQVGMVFQRPNPF-----PKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQ 166 (274)
T ss_pred ccchhHHHhhcEEEEccCCccc-----cccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHH
Confidence 356799999987643 23777774221 112233333321 6699999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEe---------C
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALK---------A 240 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~---------~ 240 (273)
+||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|+ +
T Consensus 167 ~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~ 244 (274)
T PRK14265 167 QQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRR 244 (274)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEecccccccccC
Confidence 9987 33 7899999999999999999 33455543 6788888 5689999997 8
Q ss_pred CeEeeecChhhhccChhh
Q 024032 241 GDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 241 G~i~~~g~~~~l~~~~~l 258 (273)
|++++.|++++++.++..
T Consensus 245 G~~~~~g~~~~~~~~~~~ 262 (274)
T PRK14265 245 GKLVEFSPTEQMFGSPQT 262 (274)
T ss_pred ceEEEeCCHHHHHhCCCC
Confidence 999999999999866543
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=255.90 Aligned_cols=156 Identities=19% Similarity=0.196 Sum_probs=129.5
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCcc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHT 141 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~ 141 (273)
+++++++++|...+.++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.
T Consensus 1 i~~~~~~~~~~~~~~~~----l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (178)
T cd03247 1 LSINNVSFSYPEQEQQV----LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL 76 (178)
T ss_pred CEEEEEEEEeCCCCccc----eEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhh
Confidence 47899999996433356 999999999999999999999999999999999999 99999999987642 3567
Q ss_pred EEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH-----
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK----- 212 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~----- 212 (273)
++|++|++.++ ..|++||. ...||+||+||. |+ +.+|++|||||||++||+.
T Consensus 77 i~~~~q~~~~~-----~~tv~~~i--------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l 137 (178)
T cd03247 77 ISVLNQRPYLF-----DTTLRNNL--------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQL 137 (178)
T ss_pred EEEEccCCeee-----cccHHHhh--------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHH
Confidence 89999987642 34787764 578999999986 33 8999999999999999999
Q ss_pred -HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeec
Q 024032 213 -SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 213 -~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g 247 (273)
+.++++. + +.|||++ ..||++++|++|++++.|
T Consensus 138 ~~~l~~~~-~-~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 138 LSLIFEVL-K-DKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHHHHc-C-CCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 2344443 3 7888888 458999999999998653
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=294.73 Aligned_cols=210 Identities=15% Similarity=0.147 Sum_probs=163.7
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhc---hhhh---c--------c--CCCCceEEEEEEEEeecC---Ceeeeccce
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREM---ERLA---L--------I--APDGLNELRHKFLSYRSG---DFWIPIGGI 88 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~---~--------~--~~~~~i~~~~v~~~y~~g---~~~v~~~~L 88 (273)
.+..+...-..++.+.++.+|+.++++. +... . . .....++++|++|+|+.. .+++ |
T Consensus 283 pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~----l 358 (555)
T TIGR01194 283 PLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFA----L 358 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCce----e
Confidence 4455566667788999999999999652 1110 0 0 012468999999999642 1246 9
Q ss_pred eeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccc
Q 024032 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVY 162 (273)
Q Consensus 89 ~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~ 162 (273)
+++||++++|+++||+||||||||||+++|+|+++ ++|+|.++|.++.+ +++.+++++|++.+|. .|++
T Consensus 359 ~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~-----~ti~ 433 (555)
T TIGR01194 359 GPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFD-----DLIG 433 (555)
T ss_pred ccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhh-----hhhh
Confidence 99999999999999999999999999999999999 99999999999864 4577999999988653 4777
Q ss_pred ccc--cCCHHHHHHHHHHhc---------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHH-HHH
Q 024032 163 DSR--GFNYNRVHEGLEELS---------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSP-KYV 218 (273)
Q Consensus 163 en~--~~~~~~~~~~l~~~~---------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l-~~l 218 (273)
+|. ..+.+++.++++.++ ..||||||||. |+ +++|++|||||||++||+. ..+ +.+
T Consensus 434 ~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l 513 (555)
T TIGR01194 434 PDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEEL 513 (555)
T ss_pred cccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 773 234566777777765 35999999986 44 8999999999999999999 222 222
Q ss_pred ---HhcCCcEEEEc-------eeCCEEEEEeCCeEeee
Q 024032 219 ---LRRVDFAMVVS-------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 219 ---~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~ 246 (273)
....++|+|++ ..||+|++|++|++++.
T Consensus 514 ~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 514 LPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 11237899888 46899999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=268.07 Aligned_cols=180 Identities=19% Similarity=0.291 Sum_probs=142.8
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC-
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~- 137 (273)
.+++++|++++|. +..+ |+++||+|++||+++|+|+||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 23 ~~l~~~~l~~~~~--~~~i----l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 96 (271)
T PRK14238 23 VVFDTQNLNLWYG--EDHA----LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK 96 (271)
T ss_pred eEEEEeeeEEEEC--Ccce----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccc
Confidence 4799999999985 3456 999999999999999999999999999999999974 78999999998731
Q ss_pred ------CCccEEEEeccchhhhccCCccccccccc-------CC-H----HHHHHHHHHh-------------cccCCHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FN-Y----NRVHEGLEEL-------------SSWMSEG 186 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~-~----~~~~~~l~~~-------------~~~LSgG 186 (273)
.++.++|++|++.++ ..|+++|.. .. . +.+.++++.+ ...||||
T Consensus 97 ~~~~~~~~~~i~~v~q~~~~~-----~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgG 171 (271)
T PRK14238 97 SYSVEELRTNVGMVFQKPNPF-----PKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGG 171 (271)
T ss_pred cccHHHHhhhEEEEecCCccc-----cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHH
Confidence 356799999997643 248888732 11 1 1123333322 1679999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
||||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|+++..|+
T Consensus 172 e~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 249 (271)
T PRK14238 172 QQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDD 249 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99987 33 7899999999999999999 33455543 6888888 5689999999999999999
Q ss_pred hhhhccChh
Q 024032 249 TKRLFSAPG 257 (273)
Q Consensus 249 ~~~l~~~~~ 257 (273)
+++++..+.
T Consensus 250 ~~~~~~~~~ 258 (271)
T PRK14238 250 TDKIFSNPS 258 (271)
T ss_pred HHHHHcCCC
Confidence 999886643
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=262.81 Aligned_cols=178 Identities=17% Similarity=0.228 Sum_probs=139.9
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSH 140 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~ 140 (273)
++++|++++|.. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++
T Consensus 1 l~~~~l~~~~~~-~~~~----l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~ 75 (236)
T cd03253 1 IEFENVTFAYDP-GRPV----LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR 75 (236)
T ss_pred CEEEEEEEEeCC-CCce----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHh
Confidence 468999999853 2446 999999999999999999999999999999999999 99999999998753 345
Q ss_pred cEEEEeccchhhhccCCcccccccccC-----CHHHHHH---------HHHHh-----------cccCCHHHHHHH---H
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHE---------GLEEL-----------SSWMSEGVHHNQ---R 192 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~---------~l~~~-----------~~~LSgGqkq~~---r 192 (273)
.++|++|++.++ ..|+.+|..+ ....+.+ .++.+ ...||+||+||. |
T Consensus 76 ~i~~~~q~~~~~-----~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~ 150 (236)
T cd03253 76 AIGVVPQDTVLF-----NDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIAR 150 (236)
T ss_pred hEEEECCCChhh-----cchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHH
Confidence 699999997643 3588887422 2222222 12222 147999999986 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+ +.+|++|||||||++||+. +.+..+. + |.|||++ ..||++++|++|+++..|+.+++....
T Consensus 151 aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~ 226 (236)
T cd03253 151 AILKNPPILLLDEATSALDTHTEREIQAALRDVS-K-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKG 226 (236)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcc
Confidence 3 7899999999999999999 2344443 3 8899888 348999999999999999988876543
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=268.44 Aligned_cols=179 Identities=18% Similarity=0.276 Sum_probs=141.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCC---
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG--- 136 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~--- 136 (273)
.++++|++++|. +.++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 10 ~l~i~~v~~~~~--~~~i----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 83 (264)
T PRK14243 10 VLRTENLNVYYG--SFLA----VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83 (264)
T ss_pred EEEEeeeEEEEC--CEEE----eecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence 689999999984 4567 999999999999999999999999999999999874 5899999998873
Q ss_pred ----CCCccEEEEeccchhhhccCCcccccccccC-------C---HHHHHHHHHHhc-------------ccCCHHHHH
Q 024032 137 ----NSSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N---YNRVHEGLEELS-------------SWMSEGVHH 189 (273)
Q Consensus 137 ----~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~---~~~~~~~l~~~~-------------~~LSgGqkq 189 (273)
..++.+++++|++.++ ..|+.+|..+ . .+++.++++.++ .+|||||+|
T Consensus 84 ~~~~~~~~~i~~v~q~~~~~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 158 (264)
T PRK14243 84 VDPVEVRRRIGMVFQKPNPF-----PKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQ 158 (264)
T ss_pred cChHHHhhhEEEEccCCccc-----cccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHH
Confidence 1356799999987643 2377777321 1 122333333321 569999999
Q ss_pred HH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEe---------CCe
Q 024032 190 NQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALK---------AGD 242 (273)
Q Consensus 190 ~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~---------~G~ 242 (273)
|. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|+ +|+
T Consensus 159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~ 236 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGY 236 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccccccccCce
Confidence 86 33 7899999999999999999 33455543 5788888 6689999998 899
Q ss_pred EeeecChhhhccChh
Q 024032 243 SKPLDATKRLFSAPG 257 (273)
Q Consensus 243 i~~~g~~~~l~~~~~ 257 (273)
+++.|+++++++.+.
T Consensus 237 i~~~~~~~~~~~~~~ 251 (264)
T PRK14243 237 LVEFDRTEKIFNSPQ 251 (264)
T ss_pred EEEeCCHHHHHhCCC
Confidence 999999999986653
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=261.06 Aligned_cols=171 Identities=18% Similarity=0.239 Sum_probs=135.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
.++++++++.|..+++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .+
T Consensus 2 ~l~~~~l~~~~~~~~~~~----l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 77 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPA----LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLR 77 (220)
T ss_pred eEEEEEEEEEcCCCCccc----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHH
Confidence 478999999995433456 999999999999999999999999999999999998 99999999998742 34
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-----CHHHHHHHHHHhc--------------------ccCCHHHHHHH---
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHEGLEELS--------------------SWMSEGVHHNQ--- 191 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~~l~~~~--------------------~~LSgGqkq~~--- 191 (273)
+.+++++|++.++ ..|+.||..+ ..+.+.+.++.++ .+||||||||.
T Consensus 78 ~~i~~~~q~~~~~-----~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la 152 (220)
T cd03245 78 RNIGYVPQDVTLF-----YGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALA 152 (220)
T ss_pred hhEEEeCCCCccc-----cchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHH
Confidence 5789999988643 2488887421 2334444444433 38999999986
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeec
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g 247 (273)
|+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|++++.|
T Consensus 153 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 153 RALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 33 7899999999999999999 23444443 4788888 568999999999997653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=266.32 Aligned_cols=181 Identities=17% Similarity=0.188 Sum_probs=143.1
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
.+.+++++++++|+..+..+ |+++||+|++||+++|+|+||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 17 ~~~i~~~~l~~~~~~~~~~i----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 92 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPV----LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHT 92 (257)
T ss_pred CceEEEEEEEEEeCCCCCcc----eeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHH
Confidence 45799999999996433456 999999999999999999999999999999999999 99999999998753
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC----CHHHHHHHHH---------Hhc-----------ccCCHHHHHHH--
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF----NYNRVHEGLE---------ELS-----------SWMSEGVHHNQ-- 191 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~----~~~~~~~~l~---------~~~-----------~~LSgGqkq~~-- 191 (273)
.++.+++++|++.+ +..|+++|... ....+.++++ .+. ..||+||+||.
T Consensus 93 ~~~~i~~v~q~~~l-----~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~l 167 (257)
T cd03288 93 LRSRLSIILQDPIL-----FSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCL 167 (257)
T ss_pred HhhhEEEECCCCcc-----cccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHH
Confidence 35679999998764 23478777432 1222333222 221 47999999986
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHHH------HHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLKS------SPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~~------~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|+ +++|++|||||||++||+.. .++++. + +.|||++ ..||++++|++|++++.|+++++.+.
T Consensus 168 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 168 ARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-A-DRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ 244 (257)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-C-CCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence 33 78999999999999999992 233332 3 7899888 34899999999999999999998754
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=252.84 Aligned_cols=152 Identities=20% Similarity=0.274 Sum_probs=126.7
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------C
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-------S 138 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-------~ 138 (273)
++++|++++|. ++++ ++++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .
T Consensus 1 i~~~~l~~~~~--~~~~----l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (178)
T cd03229 1 LELKNVSKRYG--QKTV----LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPL 74 (178)
T ss_pred CEEEEEEEEEC--CeEE----EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHH
Confidence 46899999984 3566 999999999999999999999999999999999999 99999999988743 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK-- 212 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~-- 212 (273)
++.+++++|++.. +...|++||.... ||+||+||. |+ +++|+++||||||++||+.
T Consensus 75 ~~~i~~~~q~~~~----~~~~t~~~~l~~~--------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~ 136 (178)
T cd03229 75 RRRIGMVFQDFAL----FPHLTVLENIALG--------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITR 136 (178)
T ss_pred hhcEEEEecCCcc----CCCCCHHHheeec--------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHH
Confidence 4678999998764 3445888875432 999999986 33 7999999999999999999
Q ss_pred ----HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCe
Q 024032 213 ----SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGD 242 (273)
Q Consensus 213 ----~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~ 242 (273)
+.+++++++.+.|+|++ ..||++++|++|+
T Consensus 137 ~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 137 REVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 33555555436898888 4689999999885
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=270.21 Aligned_cols=180 Identities=17% Similarity=0.240 Sum_probs=142.5
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
+..+++++++++|. +..+ |+++||+|++||+++|+||||||||||+++|+|+.+ ++|+|.++|+++..
T Consensus 37 ~~~l~~~~l~~~~~--~~~i----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 37 KPHVVAKNFSIYYG--EFEA----VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred ceEEEEeeeEEEEC--CEEE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 44789999999984 4556 999999999999999999999999999999999853 79999999988642
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSE 185 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSg 185 (273)
.++.++|++|++.++ ..|+.||..+ +. +.+.++++.++ ..|||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg 185 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPF-----PKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSG 185 (286)
T ss_pred cccchHHhhhcEEEECCCCCCC-----ccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCH
Confidence 356799999998643 2388887422 11 22334444331 67999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
||+||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|+++..|
T Consensus 186 Gq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g 263 (286)
T PRK14275 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHA 263 (286)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999986 33 7899999999999999999 33444443 5788888 568999999999999999
Q ss_pred ChhhhccCh
Q 024032 248 ATKRLFSAP 256 (273)
Q Consensus 248 ~~~~l~~~~ 256 (273)
+++++++.+
T Consensus 264 ~~~~~~~~~ 272 (286)
T PRK14275 264 PTAQLFTNP 272 (286)
T ss_pred CHHHHHhCC
Confidence 999987654
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=294.82 Aligned_cols=187 Identities=19% Similarity=0.254 Sum_probs=149.1
Q ss_pred CceEEEEEEEEeecC---------CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeC
Q 024032 65 GLNELRHKFLSYRSG---------DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSS 135 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g---------~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i 135 (273)
.+++++|++++|..+ ++.+ |+++||+|++||++||+||||||||||+|+|+|+++++|+|+++|+++
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~i----l~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i 349 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVV----VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPL 349 (529)
T ss_pred CcccccCcEEEeecCcccccccccccee----eecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEc
Confidence 468999999999531 3456 999999999999999999999999999999999988899999999887
Q ss_pred CC--------CCccEEEEeccchhhhccCCccccccccc---------CC----HHHHHHHHHHhc----------ccCC
Q 024032 136 GN--------SSHTITMYMEEHNVMRSLQSGFCVYDSRG---------FN----YNRVHEGLEELS----------SWMS 184 (273)
Q Consensus 136 ~~--------~~~~i~~v~q~~~~~~~~~~~~tv~en~~---------~~----~~~~~~~l~~~~----------~~LS 184 (273)
.. .++.++|++|++.. .++..+||.+|.. .. .+.+.++++.++ .+||
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 427 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNS--SLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFS 427 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchh--hcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCC
Confidence 43 24569999998731 1234458887732 11 123455566554 6899
Q ss_pred HHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
||||||. |+ +.+|++|||||||++||+. +.+++++++.|.|||++ .+||++++|++|++++.
T Consensus 428 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 507 (529)
T PRK15134 428 GGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQ 507 (529)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEE
Confidence 9999987 33 7899999999999999999 34556655458899988 56899999999999999
Q ss_pred cChhhhccChh
Q 024032 247 DATKRLFSAPG 257 (273)
Q Consensus 247 g~~~~l~~~~~ 257 (273)
|+++++++.+.
T Consensus 508 ~~~~~~~~~~~ 518 (529)
T PRK15134 508 GDCERVFAAPQ 518 (529)
T ss_pred cCHHHHhcCCC
Confidence 99999986553
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=252.14 Aligned_cols=150 Identities=15% Similarity=0.213 Sum_probs=126.7
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCcc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHT 141 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~ 141 (273)
+++++++++|. +.++ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.
T Consensus 1 l~~~~l~~~~~--~~~~----l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (173)
T cd03230 1 IEVRNLSKRYG--KKTA----LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRR 74 (173)
T ss_pred CEEEEEEEEEC--Ceee----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhcc
Confidence 46899999985 3456 999999999999999999999999999999999998 99999999998753 3567
Q ss_pred EEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH-----
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK----- 212 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~----- 212 (273)
+++++|++.+ +...|+.+|.. |||||+||. |+ +.+|++|||||||++||+.
T Consensus 75 i~~~~q~~~~----~~~~tv~~~~~----------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l 134 (173)
T cd03230 75 IGYLPEEPSL----YENLTVRENLK----------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREF 134 (173)
T ss_pred EEEEecCCcc----ccCCcHHHHhh----------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH
Confidence 9999999775 34458877642 999999986 33 7899999999999999999
Q ss_pred -HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 213 -SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 213 -~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
+.++++.++ |.|+|++ ..||++++|++|++
T Consensus 135 ~~~l~~~~~~-g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 135 WELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 345666655 8898888 46899999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=266.15 Aligned_cols=179 Identities=17% Similarity=0.235 Sum_probs=142.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-----ccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-----~G~I~i~g~~i~~-- 137 (273)
.++++|++++|. +.++ |+++||+|++||+++|+|+||||||||+++|+|+++ + +|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~~--~~~i----l~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (259)
T PRK14260 7 AIKVKDLSFYYN--TSKA----IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR 80 (259)
T ss_pred eEEEEEEEEEEC--CeEe----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc
Confidence 689999999984 4566 999999999999999999999999999999999987 3 8999999998742
Q ss_pred -----CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCHHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.+++++|++.++ ..|++||..+ .. +.+.++++.++ ..||+||
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 155 (259)
T PRK14260 81 ININRLRRQIGMVFQRPNPF-----PMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQ 155 (259)
T ss_pred cchHhhhhheEEEecccccC-----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHH
Confidence 345799999988743 3588887421 11 22344444432 5799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEe-----CCeEe
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALK-----AGDSK 244 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~-----~G~i~ 244 (273)
+||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|+ +|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~ 233 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV 233 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEE
Confidence 9986 33 7899999999999999999 33445543 6888888 5689999997 59999
Q ss_pred eecChhhhccChh
Q 024032 245 PLDATKRLFSAPG 257 (273)
Q Consensus 245 ~~g~~~~l~~~~~ 257 (273)
+.|+++++++.+.
T Consensus 234 ~~~~~~~~~~~~~ 246 (259)
T PRK14260 234 EFGVTTQIFSNPL 246 (259)
T ss_pred EeCCHHHHhcCCC
Confidence 9999999976543
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=269.06 Aligned_cols=180 Identities=22% Similarity=0.319 Sum_probs=142.6
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
+..+++++++++|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 37 ~~~l~i~~l~~~~~--~~~i----l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~ 110 (285)
T PRK14254 37 ETVIEARDLNVFYG--DEQA----LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110 (285)
T ss_pred CceEEEEEEEEEEC--CEee----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 34689999999984 4567 999999999999999999999999999999999974 69999999988732
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccC-------C---HHHHHHHHHHhc-------------ccCCHHH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N---YNRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~---~~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.+++++|++.++ ..|+.+|..+ . .+++.++++.++ .+|||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe 185 (285)
T PRK14254 111 ADVDPVALRRRIGMVFQKPNPF-----PKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQ 185 (285)
T ss_pred cccchHhhhccEEEEecCCccC-----cCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHH
Confidence 356799999987643 2378877321 1 233455555542 5799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEE-EEeCCeEeeecC
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYK-ALKAGDSKPLDA 248 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~-vl~~G~i~~~g~ 248 (273)
|||. |+ +.+|++|||||||+|||+. +.++++.+ +.|||++ .+||+++ +|++|++++.|+
T Consensus 186 ~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~ 263 (285)
T PRK14254 186 QQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDD 263 (285)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCC
Confidence 9987 33 7899999999999999999 33555554 4688888 4689975 679999999999
Q ss_pred hhhhccCh
Q 024032 249 TKRLFSAP 256 (273)
Q Consensus 249 ~~~l~~~~ 256 (273)
+++++.++
T Consensus 264 ~~~~~~~~ 271 (285)
T PRK14254 264 TDKIFENP 271 (285)
T ss_pred HHHHHhCc
Confidence 99987654
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=256.69 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=133.5
Q ss_pred ceEEEEEEEEeecC----CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc--c-CccEEEECCeeCCC-
Q 024032 66 LNELRHKFLSYRSG----DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSGN- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g----~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~--~-~~G~I~i~g~~i~~- 137 (273)
.+++++++++|+.. ++++ |+++||++++||+++|+||||||||||+++|+|++ + ++|+|.++|+++..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~----l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~ 78 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQL----LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR 78 (194)
T ss_pred EEEEEeeEEEEecCCCcccccc----eecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchH
Confidence 47899999999642 2456 99999999999999999999999999999999999 8 99999999998763
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK 212 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~ 212 (273)
.++.+++++|++.. +..+|+++|..+.. .+ ..||+||+||. |+ +.+|+++||||||++||+.
T Consensus 79 ~~~~~i~~~~q~~~~----~~~~t~~~~i~~~~--------~~-~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~ 145 (194)
T cd03213 79 SFRKIIGYVPQDDIL----HPTLTVRETLMFAA--------KL-RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSS 145 (194)
T ss_pred hhhheEEEccCcccC----CCCCcHHHHHHHHH--------Hh-ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHH
Confidence 45679999998764 34458887653211 01 17999999986 33 7899999999999999999
Q ss_pred ------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeCCeEeeec
Q 024032 213 ------SSPKYVLRRVDFAMVVS---------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 213 ------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~G~i~~~g 247 (273)
+.++++.++ |.|+|++ ..||++++|++|++++.|
T Consensus 146 ~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 146 SALQVMSLLRRLADT-GRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 335555544 8899888 337999999999997653
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=289.03 Aligned_cols=174 Identities=17% Similarity=0.204 Sum_probs=141.4
Q ss_pred EEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------CCcc
Q 024032 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------SSHT 141 (273)
Q Consensus 69 ~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~~~~ 141 (273)
++|++++|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.
T Consensus 1 ~~nl~~~~~--~~~i----l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 74 (491)
T PRK10982 1 MSNISKSFP--GVKA----LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENG 74 (491)
T ss_pred CCceEEEeC--CEEe----eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 367888883 4667 999999999999999999999999999999999998 99999999998753 2457
Q ss_pred EEEEeccchhhhccCCcccccccccC----------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF----------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~----------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
+++++|++.. ++.+||++|..+ +. +++.++++.++ .+||||||||. |+ +
T Consensus 75 i~~v~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 75 ISMVHQELNL----VLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EEEEeccccc----ccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 9999998764 445588887321 11 23455666655 67999999987 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+++..|+++++.
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER-GCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 899999999999999999 335566544 8999998 568999999999999999988764
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=287.97 Aligned_cols=187 Identities=11% Similarity=0.102 Sum_probs=148.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
+++++|++++|+ ++.+ |+++||+|++|++++|+||||||||||+|+|+|+++ ++|+|.++|.++.. .+
T Consensus 3 ~l~~~~l~~~~~--~~~i----l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~ 76 (490)
T PRK10938 3 SLQISQGTFRLS--DTKT----LQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQ 76 (490)
T ss_pred eEEEEeEEEEcC--Ceee----cccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHH
Confidence 589999999984 4456 999999999999999999999999999999999998 99999999877642 23
Q ss_pred ccEEEEeccchhh--hc--cCCcccccccccC---CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCE
Q 024032 140 HTITMYMEEHNVM--RS--LQSGFCVYDSRGF---NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDC 199 (273)
Q Consensus 140 ~~i~~v~q~~~~~--~~--~~~~~tv~en~~~---~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~i 199 (273)
+.+++++|++... .. ..+.+|+.++... ..+++.++++.++ .+||||||||. ++ +.+|++
T Consensus 77 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 156 (490)
T PRK10938 77 KLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDL 156 (490)
T ss_pred HHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 4589999976431 00 0124578776432 2345666777765 78999999987 33 789999
Q ss_pred EEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 200 ALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 200 LlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+++..|+++++++.+.+.
T Consensus 157 llLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 229 (490)
T PRK10938 157 LILDEPFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQALVA 229 (490)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcchhhh
Confidence 9999999999999 445666555 8899998 568999999999999999998876654433
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=259.19 Aligned_cols=169 Identities=19% Similarity=0.261 Sum_probs=136.4
Q ss_pred eEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 67 NELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 67 i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
++++|+++.|+.++ ..+ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~~~~~~~i----l~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQV----LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKEL 77 (220)
T ss_pred EEEEEEEEEccCCCcceeE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHH
Confidence 68999999996432 456 999999999999999999999999999999999999 99999999998752
Q ss_pred --CCccEEEEeccchhhhccCCccccccccc--------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSRG--------FNY----NRVHEGLEELS---------SWMSEGVHHNQ--- 191 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~~--------~~~----~~~~~~l~~~~---------~~LSgGqkq~~--- 191 (273)
.++.+++++|++.++ ..+|+.+|.. ... +.+.++++.++ ..||+||+||.
T Consensus 78 ~~~~~~i~~~~q~~~~~----~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~la 153 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLL----GFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIA 153 (220)
T ss_pred HHHHhheEEEcCChhhc----CCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHH
Confidence 246799999998753 3458887731 111 23555666655 67999999986
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeE
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDS 243 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i 243 (273)
|+ +.+|++|||||||++||+. ..++++.++.+.|||++ ..||++++|++|++
T Consensus 154 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 154 RALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 33 7899999999999999999 33555554447899988 56899999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=288.08 Aligned_cols=177 Identities=14% Similarity=0.185 Sum_probs=142.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc---CccEEEECCeeCCC-----
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~---~~G~I~i~g~~i~~----- 137 (273)
+++++|++++|. ++++ |+++||++++|+++||+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 ~l~i~~l~~~~~--~~~i----l~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~ 74 (500)
T TIGR02633 1 LLEMKGIVKTFG--GVKA----LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRD 74 (500)
T ss_pred CEEEEeEEEEeC--CeEe----ecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHH
Confidence 378999999984 4567 999999999999999999999999999999999987 49999999998753
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccC-----------CH----HHHHHHHHHhc----------ccCCHHHHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-----------NY----NRVHEGLEELS----------SWMSEGVHHNQ 191 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-----------~~----~~~~~~l~~~~----------~~LSgGqkq~~ 191 (273)
.++.++|++|++.+ +..+|+.+|..+ .. +++.++++.++ .+||||||||.
T Consensus 75 ~~~~~i~~v~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 150 (500)
T TIGR02633 75 TERAGIVIIHQELTL----VPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV 150 (500)
T ss_pred HHhCCEEEEeecccc----CCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH
Confidence 23569999999765 344577776321 11 23455566554 57999999987
Q ss_pred ---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 192 ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 192 ---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
|+ +.+|++|||||||+|||+. +.++++.++ |.|||++ .+||++++|++|+++..++++++.
T Consensus 151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (500)
T TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS 229 (500)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence 33 7899999999999999999 345566554 8999998 568999999999999988877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=295.74 Aligned_cols=186 Identities=15% Similarity=0.191 Sum_probs=147.6
Q ss_pred CCceEEEEEEEEeecC--CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC----
Q 024032 64 DGLNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG---- 136 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g--~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~---- 136 (273)
+.+++++|++++|..+ +.++ |++|||+|++||++||+||||||||||+|+|+|+++ ++|.|.++|..+.
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~----l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAA----VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSR 85 (623)
T ss_pred CceEEEeceEEEecCCCCceeE----EEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccc
Confidence 3479999999999642 2356 999999999999999999999999999999999998 9999999886431
Q ss_pred ------C--------C-CccEEEEeccchhhhccCCccccccccc--------CCH----HHHHHHHHHhc---------
Q 024032 137 ------N--------S-SHTITMYMEEHNVMRSLQSGFCVYDSRG--------FNY----NRVHEGLEELS--------- 180 (273)
Q Consensus 137 ------~--------~-~~~i~~v~q~~~~~~~~~~~~tv~en~~--------~~~----~~~~~~l~~~~--------- 180 (273)
. . ++.+++++|++... +...+||.+|.. .+. +++.++++.++
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 163 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTS--LNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILS 163 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhh--cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHh
Confidence 0 1 24699999987310 133458888732 222 34555666554
Q ss_pred ---ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEe
Q 024032 181 ---SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALK 239 (273)
Q Consensus 181 ---~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~ 239 (273)
.+||||||||+ ++ +.+|++|||||||++||+. ++++++.++.|+|||+| .+||+|++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 57999999987 33 7899999999999999999 34667765558999999 5689999999
Q ss_pred CCeEeeecChhhhccC
Q 024032 240 AGDSKPLDATKRLFSA 255 (273)
Q Consensus 240 ~G~i~~~g~~~~l~~~ 255 (273)
+|++++.|++++++..
T Consensus 244 ~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 244 QGEAVETGSVEQIFHA 259 (623)
T ss_pred CCeecccCCHHHhhcC
Confidence 9999999999988754
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=254.54 Aligned_cols=162 Identities=17% Similarity=0.140 Sum_probs=131.7
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC--cc-CccEEEECCeeCCCC-----
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV--LS-RSGLVLFAQTSSGNS----- 138 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl--~~-~~G~I~i~g~~i~~~----- 138 (273)
++++|++++|. ++++ |+++||++++||+++|+||||||||||+++|+|+ ++ ++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~--~~~~----l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~ 74 (200)
T cd03217 1 LEIKDLHVSVG--GKEI----LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74 (200)
T ss_pred CeEEEEEEEeC--CEEe----eeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHH
Confidence 46899999985 4567 9999999999999999999999999999999999 46 999999999988531
Q ss_pred -CccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH-
Q 024032 139 -SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK- 212 (273)
Q Consensus 139 -~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~- 212 (273)
+..++|++|++..+ ...++.++. +.....|||||+||. |+ +.+|++|||||||++||+.
T Consensus 75 ~~~~i~~v~q~~~~~----~~~~~~~~l-----------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 139 (200)
T cd03217 75 ARLGIFLAFQYPPEI----PGVKNADFL-----------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDA 139 (200)
T ss_pred hhCcEEEeecChhhc----cCccHHHHH-----------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 34599999987753 233555432 333468999999986 33 7899999999999999999
Q ss_pred -----HHHHHHHhcCCcEEEEc--------e-eCCEEEEEeCCeEeeecChh
Q 024032 213 -----SSPKYVLRRVDFAMVVS--------N-IAEIYKALKAGDSKPLDATK 250 (273)
Q Consensus 213 -----~~l~~l~~~~g~tiiiv--------~-~ad~i~vl~~G~i~~~g~~~ 250 (273)
+.++++.++ +.|||++ . .||++++|++|++++.|+.+
T Consensus 140 ~~~l~~~L~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 190 (200)
T cd03217 140 LRLVAEVINKLREE-GKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190 (200)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence 335555544 7899888 3 69999999999999998443
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=254.82 Aligned_cols=164 Identities=13% Similarity=0.087 Sum_probs=133.0
Q ss_pred ceEEEEEEEEeecC--CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc--c-CccEEEECCeeCC-CCC
Q 024032 66 LNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSG-NSS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g--~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~--~-~~G~I~i~g~~i~-~~~ 139 (273)
.++++++++.|..+ ++++ |+++||++++|++++|+||||||||||+++|+|++ + ++|+|.++|+++. ..+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQL----LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEe----EEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhh
Confidence 68899999999642 2456 99999999999999999999999999999999985 4 8999999999874 345
Q ss_pred ccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH---
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--- 212 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--- 212 (273)
+.+++++|++.. ++.+|+++|..+.. .+ ..|||||+||. |+ +.+|++|||||||++||+.
T Consensus 79 ~~i~~~~q~~~~----~~~~tv~~~l~~~~-----~~----~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~ 145 (192)
T cd03232 79 RSTGYVEQQDVH----SPNLTVREALRFSA-----LL----RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAY 145 (192)
T ss_pred hceEEecccCcc----ccCCcHHHHHHHHH-----HH----hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHH
Confidence 678999998764 44468888754311 11 18999999986 33 7899999999999999999
Q ss_pred ---HHHHHHHhcCCcEEEEc---------eeCCEEEEEeC-CeEeeec
Q 024032 213 ---SSPKYVLRRVDFAMVVS---------NIAEIYKALKA-GDSKPLD 247 (273)
Q Consensus 213 ---~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~-G~i~~~g 247 (273)
+.++++.++ |.|||++ ..||++++|++ |++++.|
T Consensus 146 ~l~~~l~~~~~~-~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 146 NIVRFLKKLADS-GQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHHHc-CCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 335555544 8899888 24799999999 9998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=258.50 Aligned_cols=164 Identities=17% Similarity=0.227 Sum_probs=131.0
Q ss_pred EEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---------CCc
Q 024032 71 HKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---------SSH 140 (273)
Q Consensus 71 ~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---------~~~ 140 (273)
+++++|+ ++ . + |+||+|++ |+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++
T Consensus 5 ~l~~~~~--~~-~----~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 5 DIEKRLP--DF-T----L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred eeeEecC--Ce-e----e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 7888884 32 3 5 99999999 9999999999999999999999999 99999999987642 345
Q ss_pred cEEEEeccchhhhccCCcccccccccC---------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGF---------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~---------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
.+++++|++.+ +..+|+.+|..+ ..+++.+.++.++ .+||||||||. ++ +.+|+
T Consensus 76 ~i~~~~q~~~~----~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (214)
T cd03297 76 KIGLVFQQYAL----FPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPE 151 (214)
T ss_pred cEEEEecCCcc----CCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 79999998765 344588887321 1224555666655 67999999986 33 79999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
+|||||||+|||+. +.++++.++.|.|||++ .+||++++|++|++++.|
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 152 LLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999 33555655447898888 468999999999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=263.23 Aligned_cols=161 Identities=16% Similarity=0.187 Sum_probs=129.6
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~ 166 (273)
|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.......++++|++.+ +..+|+.||..
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l----~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSL----LPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCccc----CCCCCHHHHHH
Confidence 578999999999999999999999999999999999 9999999999886544445889998765 33458888732
Q ss_pred ---------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HH
Q 024032 167 ---------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SS 214 (273)
Q Consensus 167 ---------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~ 214 (273)
... +.+.+.++.++ .+||||||||. |+ +.+|++|||||||+|||+. +.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 156 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 111 12455566554 67999999987 33 7899999999999999999 33
Q ss_pred HHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 215 PKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 215 l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
++++.++.|.|||++ .+||++++|++|+++..|+..++
T Consensus 157 l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 157 LMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 455554448899888 56899999999999998887665
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=261.32 Aligned_cols=164 Identities=16% Similarity=0.113 Sum_probs=126.7
Q ss_pred ecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCccEEEEeccchh
Q 024032 77 RSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHTITMYMEEHNV 151 (273)
Q Consensus 77 ~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~i~~v~q~~~~ 151 (273)
.++.+++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.++|++|+...
T Consensus 30 ~~~~~~i----l~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~ 105 (236)
T cd03267 30 KYREVEA----LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQ 105 (236)
T ss_pred ccCCeee----eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccc
Confidence 3355566 999999999999999999999999999999999998 99999999987532 34578888855332
Q ss_pred hhccCCcccccccc-------cCCHH----HHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCC
Q 024032 152 MRSLQSGFCVYDSR-------GFNYN----RVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAE 207 (273)
Q Consensus 152 ~~~~~~~~tv~en~-------~~~~~----~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts 207 (273)
++..+|+.||. +...+ .+.+.++.++ ..|||||+||. ++ +.+|++|||||||+
T Consensus 106 ---~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 106 ---LWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred ---cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 13445788763 12222 2344555544 67999999986 33 78999999999999
Q ss_pred CCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 208 IDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 208 ~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
+||+. +.++++.++.+.|||++ .+||++++|++|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999 33555555447899988 568999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=282.64 Aligned_cols=207 Identities=15% Similarity=0.118 Sum_probs=173.2
Q ss_pred chhhhhhhhHHHHHHHhchhh-----hccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHH
Q 024032 38 DLPNVSTLTPRLRVLREMERL-----ALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKS 112 (273)
Q Consensus 38 ~~~~~~~~~~r~~~~~~~~~~-----~~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKS 112 (273)
.+..+..++.|+.++++..+. +.+.+++.+.++++++.-+...+++ |+++||++.+||.+|||||||||||
T Consensus 301 q~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~pi----l~~isF~l~~G~~lgIIGPSgSGKS 376 (580)
T COG4618 301 QFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPGQKKPI----LKGISFALQAGEALGIIGPSGSGKS 376 (580)
T ss_pred HHHHHHHHHHHHHHHHHhCccccCCCCCCCCCceeeEeeeeecCCCCCCcc----eecceeEecCCceEEEECCCCccHH
Confidence 344678889999999886543 3556678999999999665555677 9999999999999999999999999
Q ss_pred HHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCHHHHHHHHHHhc-
Q 024032 113 SLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNYNRVHEGLEELS- 180 (273)
Q Consensus 113 TLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~~~~~l~~~~- 180 (273)
||.|+|.|.++ .+|.|++||-++.. +.++|||.+|+..+ |..||.||. ..+.+.+.++.+..+
T Consensus 377 TLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeL-----F~GTIaeNIaRf~~~~d~~kIieAA~lAgv 451 (580)
T COG4618 377 TLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVEL-----FDGTIAENIARFGEEADPEKVIEAARLAGV 451 (580)
T ss_pred HHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCccccee-----cCCcHHHHHHhccccCCHHHHHHHHHHcCh
Confidence 99999999999 99999999999874 56889999999884 556999993 345666666666554
Q ss_pred -------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--
Q 024032 181 -------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-- 229 (273)
Q Consensus 181 -------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-- 229 (273)
..||||||||. |+ ..+|.+++||||-++||.. +.+..++++ |.|+|+|
T Consensus 452 HelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~r-G~~vvviaH 530 (580)
T COG4618 452 HELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR-GGTVVVIAH 530 (580)
T ss_pred HHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHc-CCEEEEEec
Confidence 67999999987 55 7899999999999999999 345666666 8888777
Q ss_pred -----eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 230 -----NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 230 -----~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
..+|+|++|++|++...|+.+|++.
T Consensus 531 RPs~L~~~Dkilvl~~G~~~~FG~r~eVLa 560 (580)
T COG4618 531 RPSALASVDKILVLQDGRIAAFGPREEVLA 560 (580)
T ss_pred CHHHHhhcceeeeecCChHHhcCCHHHHHH
Confidence 4579999999999999999999874
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=264.82 Aligned_cols=181 Identities=18% Similarity=0.209 Sum_probs=143.9
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
...++++|++++|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 19 ~~~l~i~nl~~~~~--~~~i----l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~ 92 (276)
T PRK14271 19 APAMAAVNLTLGFA--GKTV----LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFN 92 (276)
T ss_pred CcEEEEeeEEEEEC--CEEE----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccc
Confidence 34789999999994 4667 999999999999999999999999999999999987 39999999988742
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC--------CHHH----HHHHHHHhc-------------ccCCHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NYNR----VHEGLEELS-------------SWMSEG 186 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~~~----~~~~l~~~~-------------~~LSgG 186 (273)
.++.++|++|++.++ ..|+++|..+ .... +.+.++.++ ..||||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l~-----~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgG 167 (276)
T PRK14271 93 YRDVLEFRRRVGMLFQRPNPF-----PMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGG 167 (276)
T ss_pred cchhHHHhhheEEeccCCccC-----CccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHH
Confidence 356799999987643 2588887321 2222 223334332 469999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
|+||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|++++.|+
T Consensus 168 q~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~ 245 (276)
T PRK14271 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGP 245 (276)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99986 33 7899999999999999999 23445543 5788888 5689999999999999999
Q ss_pred hhhhccChh
Q 024032 249 TKRLFSAPG 257 (273)
Q Consensus 249 ~~~l~~~~~ 257 (273)
++++++.+.
T Consensus 246 ~~~~~~~~~ 254 (276)
T PRK14271 246 TEQLFSSPK 254 (276)
T ss_pred HHHHHhCcC
Confidence 999987643
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=262.53 Aligned_cols=179 Identities=18% Similarity=0.263 Sum_probs=143.9
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC-
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~- 137 (273)
..+.++++++.| ++.++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 7 ~~~~~~~~~~~~--~~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 80 (261)
T PRK14263 7 IVMDCKLDKIFY--GNFMA----VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGK 80 (261)
T ss_pred ceEEEEeEEEEe--CCEEE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccc
Confidence 367889998888 45667 999999999999999999999999999999999985 49999999998742
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccCC----------HHHHHHHHHHhc-------------ccCCHHHH
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGFN----------YNRVHEGLEELS-------------SWMSEGVH 188 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~----------~~~~~~~l~~~~-------------~~LSgGqk 188 (273)
.++.+++++|++.+ +.+|+.||..+. .+.+.++++.++ ..||+||+
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~-----~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 155 (261)
T PRK14263 81 GVDPVVVRRYIGMVFQQPNP-----FSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQ 155 (261)
T ss_pred ccchHhhhhceEEEecCCcc-----ccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 34679999999764 246888884321 124455555543 46999999
Q ss_pred HHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEe--------CCe
Q 024032 189 HNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALK--------AGD 242 (273)
Q Consensus 189 q~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~--------~G~ 242 (273)
||. |+ +++|++|||||||+|||+. +.++++. + +.|+|++ .+||++++|+ +|+
T Consensus 156 qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~ 233 (261)
T PRK14263 156 QRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGY 233 (261)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCce
Confidence 986 33 7899999999999999999 3355553 3 6888888 5689999996 899
Q ss_pred EeeecChhhhccCh
Q 024032 243 SKPLDATKRLFSAP 256 (273)
Q Consensus 243 i~~~g~~~~l~~~~ 256 (273)
+++.|+++++++.+
T Consensus 234 i~~~g~~~~~~~~~ 247 (261)
T PRK14263 234 LVEMGPTAQIFQNP 247 (261)
T ss_pred EEEeCCHHHHHhCC
Confidence 99999999988654
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=288.32 Aligned_cols=185 Identities=18% Similarity=0.237 Sum_probs=144.8
Q ss_pred CceEEEEEEEEeecC--CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCC
Q 024032 65 GLNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG 136 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g--~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~ 136 (273)
.+++++|++++|..+ .+++ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~----l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 79 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTV----VNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL 79 (529)
T ss_pred ceEEEeceEEEecCCCCceee----eeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecc
Confidence 368999999999642 2456 999999999999999999999999999999999987 3899999999874
Q ss_pred CC---------CccEEEEeccchhhhccCCcccccccc--------cCC----HHHHHHHHHHhc------------ccC
Q 024032 137 NS---------SHTITMYMEEHNVMRSLQSGFCVYDSR--------GFN----YNRVHEGLEELS------------SWM 183 (273)
Q Consensus 137 ~~---------~~~i~~v~q~~~~~~~~~~~~tv~en~--------~~~----~~~~~~~l~~~~------------~~L 183 (273)
.. ++.+++++|++... +....++.+|. +.+ .+++.++++.++ .+|
T Consensus 80 ~~~~~~~~~~~~~~ig~v~Q~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 80 HASEQTLRGVRGNKIAMIFQEPMVS--LNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQL 157 (529)
T ss_pred cCCHHHHHHHhcCceEEEecCchhh--cCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCccc
Confidence 31 24699999987421 12233555542 111 234555665544 579
Q ss_pred CHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee
Q 024032 184 SEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 184 SgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~ 245 (273)
|||||||. |+ +.+|++|||||||++||+. +.++++.++.|+|||+| .+||+|++|++|+++.
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 99999987 33 7899999999999999999 34556655458999998 4689999999999999
Q ss_pred ecChhhhccC
Q 024032 246 LDATKRLFSA 255 (273)
Q Consensus 246 ~g~~~~l~~~ 255 (273)
.|++++++..
T Consensus 238 ~g~~~~~~~~ 247 (529)
T PRK15134 238 QNRAATLFSA 247 (529)
T ss_pred eCCHHHHhhC
Confidence 9999888653
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=285.81 Aligned_cols=173 Identities=13% Similarity=0.147 Sum_probs=141.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
+++++|++++|. ++++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .
T Consensus 4 ~l~~~~l~~~~~--~~~i----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 77 (501)
T PRK11288 4 YLSFDGIGKTFP--GVKA----LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAAL 77 (501)
T ss_pred eEEEeeeEEEEC--CEEE----EeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHH
Confidence 689999999994 4567 999999999999999999999999999999999998 99999999998752 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccC----------C----HHHHHHHHHHhc---------ccCCHHHHHHH---H
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF----------N----YNRVHEGLEELS---------SWMSEGVHHNQ---R 192 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~----------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r 192 (273)
++.++|++|++.+ +..+|+.+|..+ + .+++.++++.++ .+||||||||. |
T Consensus 78 ~~~i~~v~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 78 AAGVAIIYQELHL----VPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred hCCEEEEEechhc----cCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHH
Confidence 4679999998765 344588777321 1 124556666665 67999999987 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+ +.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+++..++.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 3 7899999999999999999 335556544 8999998 45899999999999876653
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=262.62 Aligned_cols=180 Identities=15% Similarity=0.241 Sum_probs=142.6
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCC-
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSG- 136 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~- 136 (273)
...++++|++++|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~--~~~v----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 14 QQKSEVNKLNFYYG--GYQA----LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred CceEEEEEEEEEEC--Ceee----eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccc
Confidence 45799999999995 4567 999999999999999999999999999999999975 4899999987653
Q ss_pred --------CCCccEEEEeccchhhhccCCcccccccccC-------C-----HHHHHHHHHHhc-------------ccC
Q 024032 137 --------NSSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N-----YNRVHEGLEELS-------------SWM 183 (273)
Q Consensus 137 --------~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~-----~~~~~~~l~~~~-------------~~L 183 (273)
..++.+++++|++.++ ..|++||..+ . .+.+.++++.++ ..|
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~-----~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L 162 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPF-----PKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNL 162 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCC-----cchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccC
Confidence 1356789999987643 2377777321 1 123344444332 569
Q ss_pred CHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee
Q 024032 184 SEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 184 SgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~ 245 (273)
|+||+||. |+ +.+|++|||||||++||+. +.++++.+ +.|||++ .+||++++|++|++++
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~l~~G~i~~ 240 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQQAARVSDYTAYMYMGELIE 240 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999986 33 7899999999999999999 33555543 6788888 4689999999999999
Q ss_pred ecChhhhccCh
Q 024032 246 LDATKRLFSAP 256 (273)
Q Consensus 246 ~g~~~~l~~~~ 256 (273)
.|++++++.++
T Consensus 241 ~g~~~~~~~~~ 251 (265)
T PRK14252 241 FGATDTIFIKP 251 (265)
T ss_pred eCCHHHHHhCC
Confidence 99999987543
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=317.00 Aligned_cols=198 Identities=13% Similarity=0.126 Sum_probs=153.6
Q ss_pred hccchhhhhhhhHHHHHHHhchhhhc-------cCCCCceEEEEEEEEeecCC-eeeeccceeeeeeEEcCCcEEEEEcC
Q 024032 35 LKLDLPNVSTLTPRLRVLREMERLAL-------IAPDGLNELRHKFLSYRSGD-FWIPIGGIQKGGMDIPPVITILLMGF 106 (273)
Q Consensus 35 ~~~~~~~~~~~~~r~~~~~~~~~~~~-------~~~~~~i~~~~v~~~y~~g~-~~v~~~~L~~is~~i~~Ge~~aivGp 106 (273)
....++.+.++..|+.++++.++... ......++++||+|+|+... .++ |+++||+|++|+++||+||
T Consensus 344 ~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v----L~~isl~i~~Ge~vaIvG~ 419 (1466)
T PTZ00265 344 NITEYMKSLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEI----YKDLNFTLTEGKTYAFVGE 419 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccCCCCCcEEEEEEEEEcCCCCCCce----eccceEEEcCCCEEEEECC
Confidence 34567789999999999987654210 01113689999999997432 346 9999999999999999999
Q ss_pred CCChHHHHHHHHhhCcc-CccEEEE-CCeeCCC-----CCccEEEEeccchhhhccCCcccccccccC------------
Q 024032 107 SGSGKSSLVNLMYSVLS-RSGLVLF-AQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF------------ 167 (273)
Q Consensus 107 nGsGKSTLl~ll~gl~~-~~G~I~i-~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~------------ 167 (273)
||||||||+++|+|+++ ++|+|++ +|.++.. +|+.+++|+|++.+| ..|++||..+
T Consensus 420 SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF-----~~TI~eNI~~g~~~~~~~~~~~ 494 (1466)
T PTZ00265 420 SGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLF-----SNSIKNNIKYSLYSLKDLEALS 494 (1466)
T ss_pred CCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccch-----hccHHHHHHhcCCCccccchhc
Confidence 99999999999999999 9999999 5677653 567899999998854 3478887322
Q ss_pred --------------------------------------------------CHHHHHHHHHHhc-----------------
Q 024032 168 --------------------------------------------------NYNRVHEGLEELS----------------- 180 (273)
Q Consensus 168 --------------------------------------------------~~~~~~~~l~~~~----------------- 180 (273)
+.+++.++++.++
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg 574 (1466)
T PTZ00265 495 NYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG 574 (1466)
T ss_pred cccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeC
Confidence 1234555555442
Q ss_pred ---ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeC
Q 024032 181 ---SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKA 240 (273)
Q Consensus 181 ---~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~ 240 (273)
..||||||||. |+ +++|+||||||||++||+. +.++++.++.|+|+|+| ..||+|++|++
T Consensus 575 ~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~ 654 (1466)
T PTZ00265 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654 (1466)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeC
Confidence 57999999987 44 8999999999999999999 23444543237899888 56899999998
Q ss_pred C
Q 024032 241 G 241 (273)
Q Consensus 241 G 241 (273)
|
T Consensus 655 g 655 (1466)
T PTZ00265 655 R 655 (1466)
T ss_pred C
Confidence 6
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=251.65 Aligned_cols=154 Identities=12% Similarity=0.177 Sum_probs=126.2
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
+++++|++++| + |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .
T Consensus 4 ~l~~~~l~~~~------~----l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 73 (182)
T cd03215 4 VLEVRGLSVKG------A----VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAI 73 (182)
T ss_pred EEEEeccEEEe------e----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHH
Confidence 58999999987 5 999999999999999999999999999999999999 99999999998753 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK-- 212 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~-- 212 (273)
++.++|++|++.. +.+++..|++||..... .||+||+||. |+ +.+|++|||||||++||+.
T Consensus 74 ~~~i~~~~q~~~~-~~~~~~~t~~e~l~~~~------------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~ 140 (182)
T cd03215 74 RAGIAYVPEDRKR-EGLVLDLSVAENIALSS------------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAK 140 (182)
T ss_pred hCCeEEecCCccc-CcccCCCcHHHHHHHHh------------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHH
Confidence 4579999998530 00244568888743321 1999999986 33 7899999999999999999
Q ss_pred ----HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 213 ----SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 213 ----~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
+.++++.++ +.|+|++ .+||++++|++|++
T Consensus 141 ~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 141 AEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 335555544 7899888 56899999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=258.40 Aligned_cols=173 Identities=16% Similarity=0.211 Sum_probs=136.4
Q ss_pred ceEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc----CccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS----RSGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~----~~G~I~i~g~~i~~-- 137 (273)
.++++++++.|...+ +++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~----l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARI----LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78 (226)
T ss_pred cceeecceeeeecCcccccc----ccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHH
Confidence 467899999996542 556 999999999999999999999999999999999975 79999999998752
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC----------CH----HHHHH-HHHHhc---------ccCCHHHHHHH--
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF----------NY----NRVHE-GLEELS---------SWMSEGVHHNQ-- 191 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~----------~~----~~~~~-~l~~~~---------~~LSgGqkq~~-- 191 (273)
.++.+++++|++.. +..+|+.||..+ .. ..+.+ .++.++ ..||+||+||.
T Consensus 79 ~~~~i~~~~q~~~~----~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l 154 (226)
T cd03234 79 FQKCVAYVRQDDIL----LPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSI 154 (226)
T ss_pred hcccEEEeCCCCcc----CcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHH
Confidence 46779999998775 344588887321 11 11222 444443 67999999987
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeCCeEeeec
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS---------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~G~i~~~g 247 (273)
|+ +.+|++|||||||+|||+. +.++++.++ +.|+|++ ..||++++|++|++++.|
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 33 7899999999999999999 345555554 8898888 347999999999998764
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=260.06 Aligned_cols=178 Identities=19% Similarity=0.285 Sum_probs=141.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC--
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN-- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~-- 137 (273)
.++++|+++.|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+.. ++|+|.++|.++..
T Consensus 3 ~l~~~~v~~~~~--~~~~----l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 3 RIEVENLNTYFD--DAHI----LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred EEEEEeEEEEeC--CeEE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 478999999984 4567 999999999999999999999999999999999863 68999999998742
Q ss_pred -----CCccEEEEeccchhhhccCCcccccccccC--------CH----HHHHHHHHHhc-------------ccCCHHH
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------NY----NRVHEGLEELS-------------SWMSEGV 187 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~~----~~~~~~l~~~~-------------~~LSgGq 187 (273)
.++.++|++|++.++ ..|+.+|..+ +. +.+.++++.++ ..||+||
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~-----~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq 151 (250)
T PRK14266 77 VDVVELRKKVGMVFQKPNPF-----PKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQ 151 (250)
T ss_pred ccHHHHhhheEEEecCCccC-----cchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHH
Confidence 356799999998753 2377777321 11 12333344332 6799999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+||. |+ +++|++|||||||+|||+. +.++++. + +.|||++ ..+|++++|++|++++.|++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~ 229 (250)
T PRK14266 152 QQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLT 229 (250)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCH
Confidence 9986 33 7899999999999999999 3345554 3 7888888 55899999999999999999
Q ss_pred hhhccCh
Q 024032 250 KRLFSAP 256 (273)
Q Consensus 250 ~~l~~~~ 256 (273)
+++...+
T Consensus 230 ~~~~~~~ 236 (250)
T PRK14266 230 DQIFINP 236 (250)
T ss_pred HHHHhCC
Confidence 9987554
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=258.11 Aligned_cols=175 Identities=17% Similarity=0.203 Sum_probs=135.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC--cc-CccEEEECCeeCCCC----
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV--LS-RSGLVLFAQTSSGNS---- 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl--~~-~~G~I~i~g~~i~~~---- 138 (273)
.++++++++.|+ ++.+ |+++||++++||++||+||||||||||+++|+|+ ++ ++|+|.++|.++...
T Consensus 7 ~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T CHL00131 7 ILEIKNLHASVN--ENEI----LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80 (252)
T ss_pred eEEEEeEEEEeC--CEEe----eecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhh
Confidence 689999999985 3556 9999999999999999999999999999999998 56 899999999987531
Q ss_pred -Cc-cEEEEeccchhhhccCCccccccccc--------------CC----HHHHHHHHHHhc----------c-cCCHHH
Q 024032 139 -SH-TITMYMEEHNVMRSLQSGFCVYDSRG--------------FN----YNRVHEGLEELS----------S-WMSEGV 187 (273)
Q Consensus 139 -~~-~i~~v~q~~~~~~~~~~~~tv~en~~--------------~~----~~~~~~~l~~~~----------~-~LSgGq 187 (273)
++ .+++++|++..++ ..|+.+|.. .. .+.+.++++.++ . .|||||
T Consensus 81 ~~~~~~~~~~q~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~ 156 (252)
T CHL00131 81 RAHLGIFLAFQYPIEIP----GVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGE 156 (252)
T ss_pred hheeeEEEEeccccccc----cccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHH
Confidence 22 3678888876533 234444411 00 123344555433 3 499999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------ee-CCEEEEEeCCeEeeecC
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NI-AEIYKALKAGDSKPLDA 248 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~-ad~i~vl~~G~i~~~g~ 248 (273)
+||. |+ +.+|++|||||||++||+. +.++++.++ |.|||++ .. ||++++|++|++++.|+
T Consensus 157 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (252)
T CHL00131 157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTS-ENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecC
Confidence 9986 33 7899999999999999999 335555544 8899888 23 79999999999999998
Q ss_pred hhh
Q 024032 249 TKR 251 (273)
Q Consensus 249 ~~~ 251 (273)
++.
T Consensus 236 ~~~ 238 (252)
T CHL00131 236 AEL 238 (252)
T ss_pred hhh
Confidence 873
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=254.45 Aligned_cols=159 Identities=18% Similarity=0.207 Sum_probs=125.9
Q ss_pred EEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---------C
Q 024032 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---------S 138 (273)
Q Consensus 69 ~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---------~ 138 (273)
++|+++.|+ ++++ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .
T Consensus 1 i~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 74 (206)
T TIGR03608 1 LKNISKKFG--DKII----LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFR 74 (206)
T ss_pred CcceEEEEC--CEEE----EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHH
Confidence 468888884 4567 999999999999999999999999999999999999 99999999998531 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.+++++|++.++ ...|++||..+ . .+++.++++.++ .+||+||+||. |+ +
T Consensus 75 ~~~i~~~~q~~~~~----~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~ 150 (206)
T TIGR03608 75 REKLGYLFQNFALI----ENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAIL 150 (206)
T ss_pred HhCeeEEecchhhc----cCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 45799999998753 34588887422 1 233455666654 67999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL 238 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl 238 (273)
.+|++|||||||++||+. +.++++.++ |.|||++ ..||++++|
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHhhcCEEEeC
Confidence 899999999999999999 335555554 8899888 456777664
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=260.88 Aligned_cols=187 Identities=19% Similarity=0.279 Sum_probs=144.2
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECC------eeCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ------TSSG 136 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g------~~i~ 136 (273)
...+++++++++| +++.+ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++| .++.
T Consensus 8 ~~~i~~~~~~~~~--~~~~~----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~ 81 (257)
T PRK14246 8 EDVFNISRLYLYI--NDKAI----LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81 (257)
T ss_pred hhheeeeeEEEec--CCcee----EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccc
Confidence 3479999999998 45667 999999999999999999999999999999999998 887666655 4443
Q ss_pred C-----CCccEEEEeccchhhhccCCccccccccc-------C-CH----HHHHHHHHHhc-------------ccCCHH
Q 024032 137 N-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------F-NY----NRVHEGLEELS-------------SWMSEG 186 (273)
Q Consensus 137 ~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~-~~----~~~~~~l~~~~-------------~~LSgG 186 (273)
. .++.++|++|++.+ +...|+.+|.. . .. +.+.++++.++ ..||+|
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~----~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G 157 (257)
T PRK14246 82 QIDAIKLRKEVGMVFQQPNP----FPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGG 157 (257)
T ss_pred cCCHHHHhcceEEEccCCcc----CCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHH
Confidence 2 35679999998775 33458887732 1 12 12344444432 569999
Q ss_pred HHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
||||. |+ +.+|+++||||||++||+. +.+.++.+ +.|||++ ..||++++|++|+++..|+
T Consensus 158 ~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~ 235 (257)
T PRK14246 158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGS 235 (257)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99986 33 8999999999999999999 33445543 6899888 5689999999999999999
Q ss_pred hhhhccChh--hHHHh
Q 024032 249 TKRLFSAPG--LRKCS 262 (273)
Q Consensus 249 ~~~l~~~~~--l~~~~ 262 (273)
++++.+++. +.+.|
T Consensus 236 ~~~~~~~~~~~~~~~~ 251 (257)
T PRK14246 236 SNEIFTSPKNELTEKY 251 (257)
T ss_pred HHHHHhCCCcHHHHHH
Confidence 999986543 44444
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=241.92 Aligned_cols=137 Identities=18% Similarity=0.210 Sum_probs=116.3
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------CC
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------SS 139 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~~ 139 (273)
++++|++++|. ++++ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .+
T Consensus 1 l~~~~l~~~~~--~~~v----l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~ 74 (163)
T cd03216 1 LELRGITKRFG--GVKA----LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARR 74 (163)
T ss_pred CEEEEEEEEEC--CeEE----EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHh
Confidence 47899999994 4567 999999999999999999999999999999999999 99999999988753 12
Q ss_pred ccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH---
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--- 212 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--- 212 (273)
+.+++++| ||+||+||. |+ +.+|++|||||||++||+.
T Consensus 75 ~~i~~~~q-----------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~ 119 (163)
T cd03216 75 AGIAMVYQ-----------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVE 119 (163)
T ss_pred cCeEEEEe-----------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHH
Confidence 34555554 999999986 33 7999999999999999999
Q ss_pred ---HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee
Q 024032 213 ---SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 213 ---~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~ 245 (273)
+.++++.++ +.|+|++ ..||++++|++|++++
T Consensus 120 ~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 120 RLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 345556544 8899888 4589999999999874
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=285.79 Aligned_cols=178 Identities=15% Similarity=0.195 Sum_probs=140.2
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc--c-CccEEEEC------------
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFA------------ 131 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~--~-~~G~I~i~------------ 131 (273)
++++|++++| +++++ |+++||+|.+|++++|+||||||||||+|+|+|++ + ++|+|.++
T Consensus 1 l~~~~l~~~~--~~~~~----l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~ 74 (520)
T TIGR03269 1 IEVKNLTKKF--DGKEV----LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74 (520)
T ss_pred CEEEEEEEEE--CCeEe----eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccc
Confidence 5789999998 34567 99999999999999999999999999999999996 6 89999997
Q ss_pred -----------CeeCC---------------CCCccEEEEecc-chhhhccCCccccccccc-------CC----HHHHH
Q 024032 132 -----------QTSSG---------------NSSHTITMYMEE-HNVMRSLQSGFCVYDSRG-------FN----YNRVH 173 (273)
Q Consensus 132 -----------g~~i~---------------~~~~~i~~v~q~-~~~~~~~~~~~tv~en~~-------~~----~~~~~ 173 (273)
|.++. ..++.+++++|+ +.+ +..+|+++|.. .. .+++.
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~~ 150 (520)
T TIGR03269 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFAL----YGDDTVLDNVLEALEEIGYEGKEAVGRAV 150 (520)
T ss_pred ccccccccccccccccccchhhhccCHHHHHHhhhcEEEEecccccc----CCCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22220 124568999997 444 33457777732 22 23455
Q ss_pred HHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-----
Q 024032 174 EGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS----- 229 (273)
Q Consensus 174 ~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv----- 229 (273)
++++.++ .+||||||||. |+ +.+|++|||||||++||+. +.++++.++.|.|||+|
T Consensus 151 ~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 151 DLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 5666655 78999999987 33 7899999999999999999 33566655558999998
Q ss_pred ---eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 230 ---NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 230 ---~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
.+||++++|++|+++..|++++++.
T Consensus 231 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred HHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 5689999999999999998877654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=256.23 Aligned_cols=180 Identities=14% Similarity=0.155 Sum_probs=133.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc--c-CccEEEECCeeCCC-----
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~--~-~~G~I~i~g~~i~~----- 137 (273)
+++++|+++.|+ ++++ |+++||+|++|++++|+||||||||||+++|+|++ + ++|+|.++|.++..
T Consensus 1 ~i~~~nl~~~~~--~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 74 (248)
T PRK09580 1 MLSIKDLHVSVE--DKAI----LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74 (248)
T ss_pred CeEEEEEEEEeC--Ceee----eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHH
Confidence 378999999985 4556 99999999999999999999999999999999994 6 89999999988753
Q ss_pred -CCccEEEEeccchhhhccC---Ccccccccc----c---CC----HHHHHHHHHHhc-----------ccCCHHHHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQ---SGFCVYDSR----G---FN----YNRVHEGLEELS-----------SWMSEGVHHNQ 191 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~---~~~tv~en~----~---~~----~~~~~~~l~~~~-----------~~LSgGqkq~~ 191 (273)
.+..+++++|++..++.+. +..++.++. . .. .+.+.+.++.++ ..||||||||.
T Consensus 75 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv 154 (248)
T PRK09580 75 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN 154 (248)
T ss_pred HhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHH
Confidence 1245899999876533210 000111110 0 11 122334444332 26999999986
Q ss_pred ---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------ee-CCEEEEEeCCeEeeecChhhh
Q 024032 192 ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NI-AEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 192 ---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~-ad~i~vl~~G~i~~~g~~~~l 252 (273)
|+ +++|++|||||||++||+. +.++.+.++ +.|||++ .. +|++++|++|+++..|+++.+
T Consensus 155 ~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 155 DILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDG-KRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 33 7999999999999999999 334455544 7899888 23 799999999999999988744
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=286.21 Aligned_cols=183 Identities=15% Similarity=0.194 Sum_probs=143.9
Q ss_pred CCceEEEEEEEEeec---CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEEC-Cee---C
Q 024032 64 DGLNELRHKFLSYRS---GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFA-QTS---S 135 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~---g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~-g~~---i 135 (273)
..+++++|++++|.. +++++ |+++||+|++|++++|+||||||||||+|+|+|+++ ++|+|.++ |.+ +
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~i----l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~ 352 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKA----VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDM 352 (520)
T ss_pred CceEEEeccEEEeccCCCCCceE----EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccc
Confidence 347999999999953 23456 999999999999999999999999999999999998 99999995 532 2
Q ss_pred C--------CCCccEEEEeccchhhhccCCcccccccccC------CH----HHHHHHHHHhc--------------ccC
Q 024032 136 G--------NSSHTITMYMEEHNVMRSLQSGFCVYDSRGF------NY----NRVHEGLEELS--------------SWM 183 (273)
Q Consensus 136 ~--------~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~------~~----~~~~~~l~~~~--------------~~L 183 (273)
. ..+++++|++|++.+ +..+||++|..+ .. +++.++++.++ .+|
T Consensus 353 ~~~~~~~~~~~~~~i~~v~q~~~l----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~L 428 (520)
T TIGR03269 353 TKPGPDGRGRAKRYIGILHQEYDL----YPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDEL 428 (520)
T ss_pred cccchhhHHHHhhhEEEEccCccc----CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhC
Confidence 1 124569999998764 344588887421 11 23444555543 479
Q ss_pred CHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee
Q 024032 184 SEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 184 SgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~ 245 (273)
|||||||. |+ +.+|++|||||||++||+. +.++++.++.|.|||++ .+||++++|++|+++.
T Consensus 429 SgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 508 (520)
T TIGR03269 429 SEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK 508 (520)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999987 33 7899999999999999999 33555555558999988 5689999999999999
Q ss_pred ecChhhhcc
Q 024032 246 LDATKRLFS 254 (273)
Q Consensus 246 ~g~~~~l~~ 254 (273)
.|+++++++
T Consensus 509 ~g~~~~~~~ 517 (520)
T TIGR03269 509 IGDPEEIVE 517 (520)
T ss_pred ECCHHHHHh
Confidence 999887753
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=264.80 Aligned_cols=180 Identities=21% Similarity=0.269 Sum_probs=141.2
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc------CccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS------RSGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~------~~G~I~i~g~~i~~ 137 (273)
+..++++|+++.|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 43 ~~~l~i~nl~~~~~--~~~i----L~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~ 116 (305)
T PRK14264 43 DAKLSVEDLDVYYG--DDHA----LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116 (305)
T ss_pred CceEEEEEEEEEeC--Ceee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 34789999999984 4556 999999999999999999999999999999999973 69999999988742
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccccCC------------------------HHHHHHHHHHhc------
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRGFN------------------------YNRVHEGLEELS------ 180 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~------------------------~~~~~~~l~~~~------ 180 (273)
.++.++|++|++.++ ..|+++|..+. .+.+.++++.++
T Consensus 117 ~~~~~~~~~~~i~~v~q~~~l~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 191 (305)
T PRK14264 117 DGVNLVELRKRVGMVFQSPNPF-----PKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN 191 (305)
T ss_pred ccccHHHHhhceEEEccCCccc-----cccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh
Confidence 346799999987643 23777763210 122344444331
Q ss_pred -------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEE
Q 024032 181 -------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIY 235 (273)
Q Consensus 181 -------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i 235 (273)
..|||||+||. |+ +++|++|||||||+|||+. +.++++.+ +.|||++ .+||++
T Consensus 192 ~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~i~~~~d~i 269 (305)
T PRK14264 192 DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQAARISDQT 269 (305)
T ss_pred HHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhcCEE
Confidence 67999999986 33 7899999999999999999 33555554 4788888 568996
Q ss_pred -EEEeCCeEeeecChhhhccCh
Q 024032 236 -KALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 236 -~vl~~G~i~~~g~~~~l~~~~ 256 (273)
++|++|++++.|+++++++.+
T Consensus 270 ~~~l~~G~i~~~g~~~~~~~~~ 291 (305)
T PRK14264 270 AVFLTGGELVEYDDTDKIFENP 291 (305)
T ss_pred EEEecCCEEEEeCCHHHHHhCc
Confidence 578999999999999987643
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=285.13 Aligned_cols=183 Identities=13% Similarity=0.179 Sum_probs=144.1
Q ss_pred CceEEEEEEEEeec-CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCC----
Q 024032 65 GLNELRHKFLSYRS-GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~-g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~---- 137 (273)
..++++|++++|.. +++.+ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 258 ~~l~~~~l~~~~~~~~~~~v----l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKR----VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred ceEEEecCcccccccccccc----ccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHH
Confidence 36899999999853 23456 999999999999999999999999999999999986 79999999998752
Q ss_pred --CCccEEEEeccchhhhccCCcccccccccC------------CH----HHHHHHHHHhc----------ccCCHHHHH
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSRGF------------NY----NRVHEGLEELS----------SWMSEGVHH 189 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~~~------------~~----~~~~~~l~~~~----------~~LSgGqkq 189 (273)
.++.++|++|++... .++..+|+.+|..+ +. +.+.+.++.++ .+|||||||
T Consensus 334 ~~~~~~i~~v~q~~~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 412 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRD-GIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQ 412 (506)
T ss_pred HHHHCCCEEeCcchhhC-CCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHH
Confidence 235689999986310 01344577776321 11 23455666654 579999999
Q ss_pred HH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhh
Q 024032 190 NQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKR 251 (273)
Q Consensus 190 ~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~ 251 (273)
|. |+ +.+|++|||||||+|||+. +.++.++++ |.|||++ .+||++++|++|+++..|++++
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 87 33 7899999999999999999 345566655 8999998 5689999999999999998887
Q ss_pred hc
Q 024032 252 LF 253 (273)
Q Consensus 252 l~ 253 (273)
+.
T Consensus 492 ~~ 493 (506)
T PRK13549 492 LT 493 (506)
T ss_pred CC
Confidence 64
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=255.61 Aligned_cols=166 Identities=18% Similarity=0.195 Sum_probs=130.4
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-----CccEEEECCeeCCC--C-CccEEEEeccch-hhhccCCc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-----RSGLVLFAQTSSGN--S-SHTITMYMEEHN-VMRSLQSG 158 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-----~~G~I~i~g~~i~~--~-~~~i~~v~q~~~-~~~~~~~~ 158 (273)
|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. . ++.+++++|++. .+ ...
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~---~~~ 78 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAF---NPL 78 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhc---Ccc
Confidence 899999999999999999999999999999999987 49999999998753 2 357999999974 22 223
Q ss_pred ccccccc-------cC-C---HHHHHHHHHHhc------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCH
Q 024032 159 FCVYDSR-------GF-N---YNRVHEGLEELS------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDL 211 (273)
Q Consensus 159 ~tv~en~-------~~-~---~~~~~~~l~~~~------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~ 211 (273)
+|+.+|. +. . .+++.+.++.++ ..||||||||. |+ +++|++|||||||+|||+
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~ 158 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDV 158 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 4655541 11 1 223445555443 56999999987 33 789999999999999999
Q ss_pred H------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 212 K------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 212 ~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
. +.++++.++.|.|||++ .+||++++|++|+++..|++++++..+
T Consensus 159 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 217 (230)
T TIGR02770 159 VNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNP 217 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9 33555554447899988 468999999999999999999987543
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=245.67 Aligned_cols=148 Identities=19% Similarity=0.268 Sum_probs=121.9
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSH 140 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~ 140 (273)
++++++++.|......+ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++
T Consensus 1 l~~~~l~~~~~~~~~~~----l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (171)
T cd03228 1 IEFKNVSFSYPGRPKPV----LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRK 76 (171)
T ss_pred CEEEEEEEEcCCCCccc----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHh
Confidence 46899999985432256 999999999999999999999999999999999999 99999999998753 345
Q ss_pred cEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH----
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK---- 212 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~---- 212 (273)
.+++++|++.++ ..|++||. ||+||+||. |+ +.+|++|||||||++||+.
T Consensus 77 ~i~~~~~~~~~~-----~~t~~e~l-----------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~ 134 (171)
T cd03228 77 NIAYVPQDPFLF-----SGTIRENI-----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEAL 134 (171)
T ss_pred hEEEEcCCchhc-----cchHHHHh-----------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHH
Confidence 789999987542 34777664 999999986 33 7899999999999999999
Q ss_pred --HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCe
Q 024032 213 --SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGD 242 (273)
Q Consensus 213 --~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~ 242 (273)
+.++++. + +.|+|++ ..||++++|++|+
T Consensus 135 l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 135 ILEALRALA-K-GKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred HHHHHHHhc-C-CCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 2344443 3 6888888 3389999999885
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=248.60 Aligned_cols=161 Identities=14% Similarity=0.137 Sum_probs=128.7
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCcc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHT 141 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~ 141 (273)
++++|+++.|. ++.+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.++.. .++.
T Consensus 1 l~i~~l~~~~~--~~~~----l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (201)
T cd03231 1 LEADELTCERD--GRAL----FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74 (201)
T ss_pred CEEEEEEEEeC--Ccee----eccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhh
Confidence 47899999984 4566 999999999999999999999999999999999999 99999999988642 4567
Q ss_pred EEEEeccchhhhccCCcccccccccC-----CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEc
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMK 203 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLD 203 (273)
+++++|++.+ ++..|++||..+ ..+.+.++++.++ ..||||||||. |+ +.+|++||||
T Consensus 75 i~~~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 150 (201)
T cd03231 75 LLYLGHAPGI----KTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILD 150 (201)
T ss_pred eEEecccccc----CCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999998764 345688887422 3445666777665 67999999986 33 7899999999
Q ss_pred CcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEE
Q 024032 204 NDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKAL 238 (273)
Q Consensus 204 EPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl 238 (273)
|||++||+. +.++++.++ |.|+|++ ..+++++++
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 151 EPTTALDKAGVARFAEAMAGHCAR-GGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCchhhhhccceeEec
Confidence 999999999 334455444 8898888 335666655
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=243.04 Aligned_cols=176 Identities=15% Similarity=0.148 Sum_probs=147.7
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
..|++++++++.+.+...+ .+|++|+|.|++||.+|||||||||||||+-+++|+.. ++|+|.+.|+++..
T Consensus 5 ~ii~~~~l~ktvg~~~~~l--~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~r 82 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGEL--SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR 82 (228)
T ss_pred ceeehhhhhhhhcCCCcce--eEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHH
Confidence 4789999999987665444 44999999999999999999999999999999999999 99999999998853
Q ss_pred ---CCccEEEEeccchhhhccCCcccccccccC-----------CHHHHHHHHHHhc---------ccCCHHHHHHH---
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-----------NYNRVHEGLEELS---------SWMSEGVHHNQ--- 191 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-----------~~~~~~~~l~~~~---------~~LSgGqkq~~--- 191 (273)
..+++++|||...++ +++|..||... .+....+.++.++ .+|||||+||+
T Consensus 83 A~~R~~~vGfVFQSF~Li----p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiA 158 (228)
T COG4181 83 AALRARHVGFVFQSFHLI----PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALA 158 (228)
T ss_pred HHhhccceeEEEEeeecc----ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHH
Confidence 347899999998874 45588998432 2344667788877 78999999987
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeee
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~ 246 (273)
|+ ...|++|+.||||-+||-. .++-.++++.|.|+++| .-|+|++-|.+|++++.
T Consensus 159 RAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 159 RAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 44 6799999999999999998 44556777889999999 34799999999999753
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=246.35 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=120.7
Q ss_pred EEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCcc
Q 024032 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHT 141 (273)
Q Consensus 68 ~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~ 141 (273)
+++|++++|. ++++ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.
T Consensus 1 ~~~~l~~~~~--~~~~----l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~ 74 (180)
T cd03214 1 EVENLSVGYG--GRTV----LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK 74 (180)
T ss_pred CeeEEEEEEC--Ceee----EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHH
Confidence 4789999884 3566 999999999999999999999999999999999999 99999999998753 2334
Q ss_pred EEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH-----
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK----- 212 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~----- 212 (273)
++|++| .+. . .++. +.++.....||+||+||. |+ +.+|+++||||||++||+.
T Consensus 75 i~~~~q---~l~--~--------~gl~-----~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~ 136 (180)
T cd03214 75 IAYVPQ---ALE--L--------LGLA-----HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIEL 136 (180)
T ss_pred HhHHHH---HHH--H--------cCCH-----hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 666666 110 0 1111 122233477999999986 33 7899999999999999999
Q ss_pred -HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 213 -SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 213 -~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
+.++++.++.+.|+|++ ..||++++|++|+++..
T Consensus 137 ~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 137 LELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 33455554437888888 46899999999998764
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=247.75 Aligned_cols=153 Identities=12% Similarity=0.141 Sum_probs=124.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSH 140 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~ 140 (273)
++++++++++|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++
T Consensus 1 ~l~~~~l~~~~~--~~~~----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~ 74 (204)
T PRK13538 1 MLEARNLACERD--ERIL----FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQ 74 (204)
T ss_pred CeEEEEEEEEEC--CEEE----EecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhh
Confidence 378999999984 4567 999999999999999999999999999999999999 99999999998753 346
Q ss_pred cEEEEeccchhhhccCCccccccccc--------CCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCE
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRG--------FNYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDC 199 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~--------~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~i 199 (273)
.+++++|++.+ +..+|+.||.. ...+.+.++++.++ ..|||||+||. ++ +++|++
T Consensus 75 ~~~~~~~~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 150 (204)
T PRK13538 75 DLLYLGHQPGI----KTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPL 150 (204)
T ss_pred heEEeCCcccc----CcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 78999988764 34458888732 12345566777665 67999999986 33 799999
Q ss_pred EEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc
Q 024032 200 ALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 200 LlLDEPts~LD~~------~~l~~l~~~~g~tiiiv 229 (273)
+||||||++||+. +.++++.++ +.|||++
T Consensus 151 lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~ 185 (204)
T PRK13538 151 WILDEPFTAIDKQGVARLEALLAQHAEQ-GGMVILT 185 (204)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHC-CCEEEEE
Confidence 9999999999999 335555544 7899888
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=276.90 Aligned_cols=178 Identities=18% Similarity=0.190 Sum_probs=147.0
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
...++++|++|+|+ +..+ |++|||++.+||++||+|.||||||||+|+|+|.++ ++|+|+++|+.+..
T Consensus 6 ~~ll~~~~i~K~Fg--gV~A----L~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~ 79 (500)
T COG1129 6 PPLLELRGISKSFG--GVKA----LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRD 79 (500)
T ss_pred cceeeeecceEEcC--Ccee----eccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHH
Confidence 34789999999994 4445 999999999999999999999999999999999999 99999999998752
Q ss_pred -CCccEEEEeccchhhhccCCccccccccc-----------CCH----HHHHHHHHHhc---------ccCCHHHHHHH-
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRG-----------FNY----NRVHEGLEELS---------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~-----------~~~----~~~~~~l~~~~---------~~LSgGqkq~~- 191 (273)
...-|..++|+..++|+ +||.||.- .+. ++..++++.++ ..||.||||.+
T Consensus 80 A~~~GI~~V~QEl~L~p~----LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~Ve 155 (500)
T COG1129 80 ALAAGIATVHQELSLVPN----LSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVE 155 (500)
T ss_pred HHhCCcEEEeechhccCC----ccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHH
Confidence 34569999999998555 49999921 122 33445566554 68999999965
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC-hhhh
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA-TKRL 252 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~-~~~l 252 (273)
|+ ..++++||||||||+|+.. ..+++++++ |.+||+| .+||||.||++|+.+...+ ..++
T Consensus 156 IArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~-Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~ 233 (500)
T COG1129 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQ-GVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET 233 (500)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCC
Confidence 44 6799999999999999999 346777766 9999999 6799999999999998877 3444
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=258.05 Aligned_cols=178 Identities=17% Similarity=0.256 Sum_probs=146.4
Q ss_pred EEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---------CCcc
Q 024032 72 KFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---------SSHT 141 (273)
Q Consensus 72 v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---------~~~~ 141 (273)
+++++..|+.. =+++|+++.-.++||.|+||||||||+|+|+|+.+ ++|.|.++|.-+.+ .+++
T Consensus 4 ~~~~~~lG~~~------l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~Rr 77 (352)
T COG4148 4 LNFRQRLGNFA------LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRR 77 (352)
T ss_pred EehhhhcCceE------EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhhe
Confidence 34555555532 36799999878999999999999999999999999 99999999986532 4688
Q ss_pred EEEEeccchhhhccCCcccccccccC-----CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEc
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMK 203 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLD 203 (273)
+|||||+..+||++ ||+.|..+ ......++.+.++ ..||||||||+ |+ ++.|++|+||
T Consensus 78 iGYVFQDARLFpH~----tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmD 153 (352)
T COG4148 78 IGYVFQDARLFPHY----TVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMD 153 (352)
T ss_pred eeeEeeccccccce----EEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeec
Confidence 99999999987665 99999432 2334455555554 89999999997 44 8999999999
Q ss_pred CcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 204 NDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 204 EPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
||.++||.. -.++++.++.++.|++| ++||+|++|++|++.+.|..++++..+.+.
T Consensus 154 EPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~~~~ 223 (352)
T COG4148 154 EPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPDFP 223 (352)
T ss_pred CchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCcccC
Confidence 999999988 34678888889999999 778999999999999999999999876543
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=248.76 Aligned_cols=166 Identities=16% Similarity=0.133 Sum_probs=132.1
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--CCc
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN--SSH 140 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~--~~~ 140 (273)
+.+++++|++++|. ++.+ ++++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++
T Consensus 9 ~~~l~~~~l~~~~~--~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~ 82 (214)
T PRK13543 9 PPLLAAHALAFSRN--EEPV----FGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSR 82 (214)
T ss_pred cceEEEeeEEEecC--Ccee----eecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhh
Confidence 45799999999984 3456 999999999999999999999999999999999999 99999999998763 345
Q ss_pred cEEEEeccchhhhccCCccccccccc-------C-CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCE
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRG-------F-NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDC 199 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~-------~-~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~i 199 (273)
.+++++|++.+ +...|+++|.. . ..+.+.+.++.++ ..||+|||||. |+ +.+|++
T Consensus 83 ~i~~~~q~~~~----~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (214)
T PRK13543 83 FMAYLGHLPGL----KADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPL 158 (214)
T ss_pred ceEEeecCccc----ccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 68999988664 33458888731 1 1234455666655 67999999986 33 789999
Q ss_pred EEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC
Q 024032 200 ALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKA 240 (273)
Q Consensus 200 LlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~ 240 (273)
|||||||++||+. +.++++.++ |.|+|++ +.||++++++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 159 WLLDEPYANLDLEGITLVNRMISAHLRG-GGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999 334555544 8898888 56789988863
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=246.89 Aligned_cols=158 Identities=18% Similarity=0.237 Sum_probs=123.8
Q ss_pred eEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccE
Q 024032 67 NELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i 142 (273)
++++|++++|..++ .++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++| ++
T Consensus 1 l~~~~l~~~~~~~~~~~~~i----l~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--------~i 68 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFT----LKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--------SI 68 (204)
T ss_pred CEEeEEEEecCCCCccccce----eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------EE
Confidence 47899999996432 256 999999999999999999999999999999999999 999999998 58
Q ss_pred EEEeccchhhhccCCcccccccccC----CHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-c
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF----NYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~----~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l 194 (273)
+|++|++.+ +..|++||... ..+...++++.++ ..||+||+||. |+ +
T Consensus 69 ~~~~q~~~l-----~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~ 143 (204)
T cd03250 69 AYVSQEPWI-----QNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVY 143 (204)
T ss_pred EEEecCchh-----ccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 999999874 34588888432 2223333222211 57999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHHH--HH-H----HHHhcCCcEEEEc-------eeCCEEEEEeCCe
Q 024032 195 RSDDCALMKNDAEIDDLKS--SP-K----YVLRRVDFAMVVS-------NIAEIYKALKAGD 242 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~~--~l-~----~l~~~~g~tiiiv-------~~ad~i~vl~~G~ 242 (273)
.+|+++||||||++||+.. .+ + .+.++ |.|||++ ..||++++|++|+
T Consensus 144 ~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~-~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 144 SDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN-NKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC-CCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 8999999999999999982 22 2 22233 7899988 2389999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=256.02 Aligned_cols=168 Identities=21% Similarity=0.210 Sum_probs=140.0
Q ss_pred CceEEEEEEEEeecCCe---eeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCc
Q 024032 65 GLNELRHKFLSYRSGDF---WIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSH 140 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~---~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~ 140 (273)
.+++++|+++.|..+.. ...+.|+++|||+|++||++||||+||||||||-|+|.||++ ++|+|+++|+++....
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~- 81 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS- 81 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence 36899999999976431 101256999999999999999999999999999999999999 9999999999875433
Q ss_pred cEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCCEEEEcCcC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDDCALMKNDA 206 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~iLlLDEPt 206 (273)
.....+++.+.++.++ .+|||||+||. |+ +.+|+++++|||+
T Consensus 82 ------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpv 137 (268)
T COG4608 82 ------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPV 137 (268)
T ss_pred ------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCch
Confidence 0112344666666665 89999999986 55 7899999999999
Q ss_pred CCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 207 EIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 207 s~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
|+||.. ++++++.++.|.|.++| .++|||+||..|+|++.|+.++++.+|.
T Consensus 138 SaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~ 202 (268)
T COG4608 138 SALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPL 202 (268)
T ss_pred hhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCC
Confidence 999996 55778888889999999 5689999999999999999999997653
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=252.45 Aligned_cols=168 Identities=15% Similarity=0.158 Sum_probs=135.4
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc-----
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG----- 166 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~----- 166 (273)
|+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...++.++|++|++..+. .+..|+.+|..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~--~~~~tv~~~l~~~~~~ 78 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAW--DFPISVAHTVMSGRTG 78 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccC--CCCccHHHHHHhcccc
Confidence 5789999999999999999999999999999 999999999987655677999999876421 23456766521
Q ss_pred ------C----CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHH
Q 024032 167 ------F----NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKY 217 (273)
Q Consensus 167 ------~----~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~ 217 (273)
. ..+++.++++.++ ..||+|||||. |+ +.+|++|||||||++||+. +.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~ 158 (223)
T TIGR03771 79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIE 158 (223)
T ss_pred ccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 0 1234566677665 67999999986 33 7999999999999999999 33555
Q ss_pred HHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHHHhCC
Q 024032 218 VLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRKCSKI 264 (273)
Q Consensus 218 l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~~~~~ 264 (273)
+.++ |.|+|++ +.||+++++ +|+++..|+++++.++..+.+.|+.
T Consensus 159 ~~~~-~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~~~~~~~~~~ 211 (223)
T TIGR03771 159 LAGA-GTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDPAPWMTTFGV 211 (223)
T ss_pred HHHc-CCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcChHHHHHHhCC
Confidence 5544 8899998 568999999 7999999999999887777777764
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=251.80 Aligned_cols=169 Identities=19% Similarity=0.282 Sum_probs=132.4
Q ss_pred CCceEEEEEEEEeecCC-eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----
Q 024032 64 DGLNELRHKFLSYRSGD-FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~-~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---- 137 (273)
.+.+++++++++|+..+ .++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLV----LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHK 84 (226)
T ss_pred CceEEEEEEEEEeCCCCCCcc----ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHH
Confidence 46799999999996432 346 999999999999999999999999999999999999 99999999987642
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccC-----CHHH---------HHHHHHHh--c---------ccCCHHHHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNR---------VHEGLEEL--S---------SWMSEGVHHNQ 191 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~---------~~~~l~~~--~---------~~LSgGqkq~~ 191 (273)
.++.+++++|++.++ ..|+++|..+ .... +.+.++.+ + .+|||||+||.
T Consensus 85 ~~~~~i~~~~q~~~l~-----~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv 159 (226)
T cd03248 85 YLHSKVSLVGQEPVLF-----ARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRV 159 (226)
T ss_pred HHHhhEEEEecccHHH-----hhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHH
Confidence 346799999998653 2488887431 1111 12334444 2 67999999986
Q ss_pred ---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeE
Q 024032 192 ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDS 243 (273)
Q Consensus 192 ---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i 243 (273)
|+ +.+|++|||||||++||+. +.++++.+ +.|+|++ ..||++++|++|++
T Consensus 160 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 160 AIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 33 7999999999999999999 33444443 5788888 34899999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=270.86 Aligned_cols=184 Identities=17% Similarity=0.187 Sum_probs=153.2
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
.+.+.|.+|+|.|.. .+++ |+++||++++|+.+|++||||+||||++++|.++|+ .+|.|.+||+++++
T Consensus 260 ~g~v~F~~V~F~y~~-~r~i----L~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~s 334 (497)
T COG5265 260 LGAVAFINVSFAYDP-RRPI----LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQS 334 (497)
T ss_pred cceEEEEEEEeeccc-cchh----hcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHH
Confidence 456899999999964 5667 999999999999999999999999999999999999 99999999999974
Q ss_pred CCccEEEEeccchhhhccCCccccccc-----ccCCHHHHHHHHHHhc--------------------ccCCHHHHHHH-
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDS-----RGFNYNRVHEGLEELS--------------------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en-----~~~~~~~~~~~l~~~~--------------------~~LSgGqkq~~- 191 (273)
+|+.||.|+|+..+|. .|++.| +....+++..+++.+. ..||||||||.
T Consensus 335 lR~aIg~VPQDtvLFN-----Dti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrva 409 (497)
T COG5265 335 LRRAIGIVPQDTVLFN-----DTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVA 409 (497)
T ss_pred HHHHhCcCcccceehh-----hhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHH
Confidence 6788999999998654 467666 3345666666666544 56999999987
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH--H----HHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK--S----SPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~--~----~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|. +++|+||+|||.||+||.. + .++++.+ |+|.++| -.||.|+||++|+|++.|+|++++..
T Consensus 410 iar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~--~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 410 IARTILKNPPILILDEATSALDTHTEQAIQAALREVSA--GRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred HHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC--CCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHc
Confidence 33 8999999999999999998 2 2444544 7776666 45899999999999999999999876
Q ss_pred hhhH
Q 024032 256 PGLR 259 (273)
Q Consensus 256 ~~l~ 259 (273)
..++
T Consensus 488 ~g~y 491 (497)
T COG5265 488 GGLY 491 (497)
T ss_pred CChH
Confidence 5544
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=270.72 Aligned_cols=173 Identities=14% Similarity=0.155 Sum_probs=144.7
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
..++++++++.|+ +..+ +++|||+|++||+.||+|.||||||||+++|.|+|+ ++|+|+++|+.+.-
T Consensus 3 ~~l~~~~itK~f~--~~~A----nd~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA 76 (501)
T COG3845 3 PALEMRGITKRFP--GVVA----NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDA 76 (501)
T ss_pred ceEEEeccEEEcC--CEEe----cCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHH
Confidence 4689999999995 4444 999999999999999999999999999999999999 99999999998752
Q ss_pred CCccEEEEeccchhhhccCCccccccccc----------CCHH----HHHHHHHHhc---------ccCCHHHHHHH---
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRG----------FNYN----RVHEGLEELS---------SWMSEGVHHNQ--- 191 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~----------~~~~----~~~~~l~~~~---------~~LSgGqkq~~--- 191 (273)
.+.-||+|+|++.+++. +||.||.- .+.. ++.+..++++ ..||-|+|||.
T Consensus 77 ~~~GIGMVhQHF~Lv~~----lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIl 152 (501)
T COG3845 77 IRLGIGMVHQHFMLVPT----LTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEIL 152 (501)
T ss_pred HHcCCcEEeeccccccc----cchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHH
Confidence 45679999999998554 59999931 1333 3444555555 78999999987
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
++ +++|++|||||||+-|-|. +.++.+.++ |+|||+| .+|||+.||++|+++...+
T Consensus 153 KaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~-G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 153 KALYRGARLLILDEPTAVLTPQEADELFEILRRLAAE-GKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 33 7999999999999999999 346677766 9999999 6799999999999986655
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=240.59 Aligned_cols=150 Identities=15% Similarity=0.187 Sum_probs=122.7
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v 145 (273)
+++++++++|+. ++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|. +.++|+
T Consensus 1 i~~~~~~~~~~~-~~~~----l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~------~~i~~~ 69 (166)
T cd03223 1 IELENLSLATPD-GRVL----LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG------EDLLFL 69 (166)
T ss_pred CEEEEEEEEcCC-CCee----eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC------ceEEEE
Confidence 468999999853 2456 999999999999999999999999999999999999 9999999874 578999
Q ss_pred eccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHHHH
Q 024032 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKYVL 219 (273)
Q Consensus 146 ~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~l~ 219 (273)
+|++.+ +..|+.||..+. ...+||||||||. |+ +++|+++||||||++||+. ..+.++.
T Consensus 70 ~q~~~~-----~~~tv~~nl~~~----------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l 134 (166)
T cd03223 70 PQRPYL-----PLGTLREQLIYP----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL 134 (166)
T ss_pred CCCCcc-----ccccHHHHhhcc----------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHH
Confidence 998763 345888885432 2478999999986 33 7999999999999999999 3333333
Q ss_pred hcCCcEEEEc-------eeCCEEEEEeCCe
Q 024032 220 RRVDFAMVVS-------NIAEIYKALKAGD 242 (273)
Q Consensus 220 ~~~g~tiiiv-------~~ad~i~vl~~G~ 242 (273)
++.+.|+|++ ..||++++|++|.
T Consensus 135 ~~~~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 135 KELGITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred HHhCCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 3347898888 4689999998764
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=251.16 Aligned_cols=163 Identities=17% Similarity=0.214 Sum_probs=123.7
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v 145 (273)
+.++++++.| +++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|+++|+++.......
T Consensus 23 l~~~~~~~~~--~~~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~--- 93 (224)
T cd03220 23 LGILGRKGEV--GEFWA----LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGG--- 93 (224)
T ss_pred hhhhhhhhhc--CCeEE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccc---
Confidence 5566676655 45667 999999999999999999999999999999999999 9999999998753211111
Q ss_pred eccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEE
Q 024032 146 MEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCAL 201 (273)
Q Consensus 146 ~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLl 201 (273)
. +.+..|+.||.. ... +.+.++++.++ ..||||||||. |+ +++|++||
T Consensus 94 ----~----~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 165 (224)
T cd03220 94 ----G----FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILL 165 (224)
T ss_pred ----c----CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1 123346766621 121 22344454443 78999999986 33 78999999
Q ss_pred EcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 202 MKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 202 LDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
|||||++||+. +.++++.++ |.|||++ .+||++++|++|++++.|
T Consensus 166 lDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 166 IDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999998 345556555 7899888 468999999999998754
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=279.85 Aligned_cols=176 Identities=10% Similarity=0.131 Sum_probs=139.5
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
..++++|+++.| + .+ |+++||+|++|++++|+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 264 ~~l~~~~l~~~~--~--~~----l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~ 335 (510)
T PRK09700 264 TVFEVRNVTSRD--R--KK----VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDA 335 (510)
T ss_pred cEEEEeCccccC--C--Cc----ccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHH
Confidence 369999999865 2 25 999999999999999999999999999999999999 99999999988743
Q ss_pred CCccEEEEeccc---hhhhccCCcccccccccC----------------C----HHHHHHHHHHhc----------ccCC
Q 024032 138 SSHTITMYMEEH---NVMRSLQSGFCVYDSRGF----------------N----YNRVHEGLEELS----------SWMS 184 (273)
Q Consensus 138 ~~~~i~~v~q~~---~~~~~~~~~~tv~en~~~----------------~----~~~~~~~l~~~~----------~~LS 184 (273)
.++.++|++|++ .+ +..+|+++|..+ . .+.+.++++.++ .+||
T Consensus 336 ~~~~i~~v~q~~~~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 411 (510)
T PRK09700 336 VKKGMAYITESRRDNGF----FPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELS 411 (510)
T ss_pred HHCCcEEccCccccCCC----cCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCC
Confidence 235689999974 33 334577776321 1 123455666654 5799
Q ss_pred HHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
||||||. |+ +.+|++|||||||++||+. +.+++++++ |.|||++ .+||++++|++|+++..
T Consensus 412 gGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 412 GGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 9999987 33 7899999999999999999 345566554 8999998 56899999999999988
Q ss_pred cChhhhc
Q 024032 247 DATKRLF 253 (273)
Q Consensus 247 g~~~~l~ 253 (273)
++..+.+
T Consensus 491 ~~~~~~~ 497 (510)
T PRK09700 491 LTNRDDM 497 (510)
T ss_pred ecCcccC
Confidence 7664433
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=278.53 Aligned_cols=172 Identities=15% Similarity=0.153 Sum_probs=135.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
+++++|++++|+ ++++ |+++||+|++|++++|+||||||||||+|+|+|+++ ++|+|.++|. ..+++
T Consensus 1 ml~i~~ls~~~~--~~~i----l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~i~~ 68 (530)
T PRK15064 1 MLSTANITMQFG--AKPL----FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN------ERLGK 68 (530)
T ss_pred CEEEEEEEEEeC--CcEe----EeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------CEEEE
Confidence 378999999984 4567 999999999999999999999999999999999998 9999999873 35899
Q ss_pred EeccchhhhccCCcccccccccCC-------------------------------------------HHHHHHHHHHhc-
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGFN-------------------------------------------YNRVHEGLEELS- 180 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~~-------------------------------------------~~~~~~~l~~~~- 180 (273)
++|++.. +..+|++||..+. ..++.++++.++
T Consensus 69 ~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 144 (530)
T PRK15064 69 LRQDQFA----FEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI 144 (530)
T ss_pred EeccCCc----CCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC
Confidence 9998764 3344666652210 123444555443
Q ss_pred ---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEEEE
Q 024032 181 ---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIYKA 237 (273)
Q Consensus 181 ---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i~v 237 (273)
.+||||||||. ++ +.+|++|||||||++||+. ..+.++.++.|.|||+| .+||++++
T Consensus 145 ~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~ 224 (530)
T PRK15064 145 PEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMAD 224 (530)
T ss_pred ChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEE
Confidence 56999999987 33 7899999999999999999 33333333448899988 56899999
Q ss_pred EeCCeEe-eecChhhhc
Q 024032 238 LKAGDSK-PLDATKRLF 253 (273)
Q Consensus 238 l~~G~i~-~~g~~~~l~ 253 (273)
|++|+++ ..|++++++
T Consensus 225 l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 225 LDYGELRVYPGNYDEYM 241 (530)
T ss_pred EeCCEEEEecCCHHHHH
Confidence 9999994 788887665
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=243.28 Aligned_cols=154 Identities=14% Similarity=0.174 Sum_probs=123.1
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCcc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHT 141 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~ 141 (273)
++++|++++|. ++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.
T Consensus 1 l~~~~l~~~~~--~~~~----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (198)
T TIGR01189 1 LAARNLACSRG--ERML----FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74 (198)
T ss_pred CEEEEEEEEEC--CEEE----EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhh
Confidence 47899999884 4567 999999999999999999999999999999999999 99999999998753 3467
Q ss_pred EEEEeccchhhhccCCcccccccccC-------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEE
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCAL 201 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLl 201 (273)
++|++|+..+ +..+|+.+|..+ ..+.+.++++.++ .+|||||+||. |+ +.+|+++|
T Consensus 75 i~~~~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 150 (198)
T TIGR01189 75 ILYLGHLPGL----KPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWI 150 (198)
T ss_pred eEEeccCccc----ccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 8999987664 334588887321 1234566666655 67999999986 33 78999999
Q ss_pred EcCcCCCCCHH------HHHHHHHhcCCcEEEEcee
Q 024032 202 MKNDAEIDDLK------SSPKYVLRRVDFAMVVSNI 231 (273)
Q Consensus 202 LDEPts~LD~~------~~l~~l~~~~g~tiiiv~~ 231 (273)
|||||++||+. +.++++.++ |.|+|++.|
T Consensus 151 lDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH 185 (198)
T TIGR01189 151 LDEPTTALDKAGVALLAGLLRAHLAR-GGIVLLTTH 185 (198)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEEc
Confidence 99999999999 334555444 889988844
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=297.39 Aligned_cols=217 Identities=17% Similarity=0.199 Sum_probs=182.3
Q ss_pred hhhhhccchhhhhhhhHHHHHHHhchhh---hc-----c---CCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCc
Q 024032 31 ECVKLKLDLPNVSTLTPRLRVLREMERL---AL-----I---APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVI 99 (273)
Q Consensus 31 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~---~~-----~---~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge 99 (273)
-+..+.+++.....+.+|+.+..+++++ .. + +..+.|+++|++.+|+.+...| |++|||+|++||
T Consensus 1092 ~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~V----Lk~is~~I~p~e 1167 (1381)
T KOG0054|consen 1092 WLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLV----LKGISFTIKPGE 1167 (1381)
T ss_pred HHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcch----hcCceEEEcCCc
Confidence 3445557777888999999999886543 11 1 1246899999999999876677 999999999999
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc----cCCH
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR----GFNY 169 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~----~~~~ 169 (273)
.+||||..|||||||+++|.++.. .+|+|.|||.|+.+ +|++++.+||+|.+ |..|++.|. ..++
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvL-----FsGTvR~NLDPf~e~sD 1242 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVL-----FSGTVRFNLDPFDEYSD 1242 (1381)
T ss_pred eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCce-----ecCccccccCcccccCH
Confidence 999999999999999999999999 99999999999974 78999999999994 566999994 3578
Q ss_pred HHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHH-HHhc-
Q 024032 170 NRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKY-VLRR- 221 (273)
Q Consensus 170 ~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~-l~~~- 221 (273)
++++++|+.+. .++|-||||.. || +++++||+|||+|+++|+. .++++ ++++
T Consensus 1243 ~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F 1322 (1381)
T KOG0054|consen 1243 DEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF 1322 (1381)
T ss_pred HHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh
Confidence 89999999876 67999999965 55 8999999999999999999 34433 2222
Q ss_pred CCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 222 VDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 222 ~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
.++|||.| -.+|||+||++|+|++.|+|+++++++
T Consensus 1323 ~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~ 1364 (1381)
T KOG0054|consen 1323 KDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDK 1364 (1381)
T ss_pred cCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCC
Confidence 17999999 337999999999999999999999764
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=244.81 Aligned_cols=153 Identities=12% Similarity=0.147 Sum_probs=124.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--CCccE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN--SSHTI 142 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~--~~~~i 142 (273)
+++++|+++.|. ++.+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .++.+
T Consensus 2 ~l~~~~l~~~~~--~~~~----l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (207)
T PRK13539 2 MLEGEDLACVRG--GRVL----FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75 (207)
T ss_pred EEEEEeEEEEEC--CeEE----EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhc
Confidence 478999999984 4556 999999999999999999999999999999999999 99999999987642 45678
Q ss_pred EEEeccchhhhccCCccccccccc-------CCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEE
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRG-------FNYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALM 202 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~-------~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlL 202 (273)
++++|+... ++..|+.+|.. ...+.+.++++.++ .+|||||+||. |+ +.+|++|||
T Consensus 76 ~~~~~~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 151 (207)
T PRK13539 76 HYLGHRNAM----KPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWIL 151 (207)
T ss_pred EEecCCCcC----CCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888887664 34568888732 22344666777765 67999999986 33 789999999
Q ss_pred cCcCCCCCHH------HHHHHHHhcCCcEEEEc
Q 024032 203 KNDAEIDDLK------SSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 203 DEPts~LD~~------~~l~~l~~~~g~tiiiv 229 (273)
||||++||+. +.++++.++ |.|||++
T Consensus 152 DEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~ 183 (207)
T PRK13539 152 DEPTAALDAAAVALFAELIRAHLAQ-GGIVIAA 183 (207)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEE
Confidence 9999999999 334555544 8999998
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=264.04 Aligned_cols=192 Identities=16% Similarity=0.170 Sum_probs=159.9
Q ss_pred CCceEEEEEEEEeecCCe-----eeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-
Q 024032 64 DGLNELRHKFLSYRSGDF-----WIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~-----~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~- 137 (273)
...++.+++...|+-.+- .-...|++++||++++||.+||||.||||||||-.+|.++++.+|+|.|+|+++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~ 353 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGL 353 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCcccccc
Confidence 347899999999975421 11235799999999999999999999999999999999999977999999999863
Q ss_pred -------CCccEEEEeccchhhhccCCcccccccc---------cC----CHHHHHHHHHHhc----------ccCCHHH
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSR---------GF----NYNRVHEGLEELS----------SWMSEGV 187 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~---------~~----~~~~~~~~l~~~~----------~~LSgGq 187 (273)
+|+++-.|||+|.-- +.+.+||.+.. .. ..+++.++++.++ .++||||
T Consensus 354 ~~~~mrplR~~mQvVFQDPygS--LsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQ 431 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGS--LSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQ 431 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCC--CCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcch
Confidence 567889999998632 34556776641 12 2456778888887 8899999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
|||. |+ +.+|++++||||||+||.. ++++.+.+++|.+-++| .+||+|+||++|+||++|+.
T Consensus 432 RQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~ 511 (534)
T COG4172 432 RQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPT 511 (534)
T ss_pred hhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCH
Confidence 9987 44 7899999999999999988 56788888889999888 56899999999999999999
Q ss_pred hhhccChh
Q 024032 250 KRLFSAPG 257 (273)
Q Consensus 250 ~~l~~~~~ 257 (273)
+++|++|.
T Consensus 512 ~~if~~P~ 519 (534)
T COG4172 512 EAVFANPQ 519 (534)
T ss_pred HHHhcCCC
Confidence 99998774
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=244.65 Aligned_cols=154 Identities=16% Similarity=0.189 Sum_probs=124.1
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCcc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHT 141 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~ 141 (273)
++++|++++|. ++++ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|+++|+++.. .++.
T Consensus 2 l~~~~l~~~~~--~~~i----l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~ 75 (200)
T PRK13540 2 LDVIELDFDYH--DQPL----LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75 (200)
T ss_pred EEEEEEEEEeC--CeeE----EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhh
Confidence 78999999984 4567 999999999999999999999999999999999999 99999999988753 3567
Q ss_pred EEEEeccchhhhccCCcccccccccC------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEE
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALM 202 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlL 202 (273)
+++++|++.+ ++..|+.+|..+ ....+.+.++.++ ..||+||+||. |+ +++|++|||
T Consensus 76 i~~~~q~~~~----~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lil 151 (200)
T PRK13540 76 LCFVGHRSGI----NPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLL 151 (200)
T ss_pred eEEecccccc----CcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8999998764 345688887432 1234556666554 57999999986 33 799999999
Q ss_pred cCcCCCCCHH------HHHHHHHhcCCcEEEEcee
Q 024032 203 KNDAEIDDLK------SSPKYVLRRVDFAMVVSNI 231 (273)
Q Consensus 203 DEPts~LD~~------~~l~~l~~~~g~tiiiv~~ 231 (273)
||||++||+. +.++++.++ |.|||++.|
T Consensus 152 DEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh 185 (200)
T PRK13540 152 DEPLVALDELSLLTIITKIQEHRAK-GGAVLLTSH 185 (200)
T ss_pred eCCCcccCHHHHHHHHHHHHHHHHc-CCEEEEEeC
Confidence 9999999999 335555444 889988843
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=304.57 Aligned_cols=211 Identities=15% Similarity=0.130 Sum_probs=167.3
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchhhhc------cCCCCceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcEE
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~------~~~~~~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
+..++.....+.++..+.+|+.++++.++... ......++++|++|+|+.. ++++ |+|+||+|++|+.+
T Consensus 571 l~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~~~~~v----L~~inl~i~~Ge~v 646 (1495)
T PLN03232 571 LNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPT----LSDINLEIPVGSLV 646 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCCCCCCce----eeeeEEEEcCCCEE
Confidence 34566666778899999999999987654211 0112369999999999753 3456 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc----CCHHHHHHHH
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG----FNYNRVHEGL 176 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~----~~~~~~~~~l 176 (273)
+|+||||||||||+++|+|+++ .+|.+. ..+..++|++|++.+ ++.||+||.. ++.+++++++
T Consensus 647 aIvG~sGSGKSTLl~lLlG~~~~~~G~i~-------~~~~~Iayv~Q~p~L-----f~gTIreNI~fg~~~~~e~~~~vl 714 (1495)
T PLN03232 647 AIVGGTGEGKTSLISAMLGELSHAETSSV-------VIRGSVAYVPQVSWI-----FNATVRENILFGSDFESERYWRAI 714 (1495)
T ss_pred EEECCCCCcHHHHHHHHhCCCcccCCCEE-------EecCcEEEEcCcccc-----ccccHHHHhhcCCccCHHHHHHHH
Confidence 9999999999999999999999 888763 245689999999985 4569999943 4667777777
Q ss_pred HHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH---HHHHHHHh--cCCcEEE
Q 024032 177 EELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK---SSPKYVLR--RVDFAMV 227 (273)
Q Consensus 177 ~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~---~~l~~l~~--~~g~tii 227 (273)
+.++ ..||||||||. |+ +++|+|+|||||||+||+. +.++.+.+ ..++|+|
T Consensus 715 ~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~I 794 (1495)
T PLN03232 715 DVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRV 794 (1495)
T ss_pred HHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEE
Confidence 7654 46999999987 55 8999999999999999998 22333211 1278988
Q ss_pred Ec-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 228 VS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 228 iv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
+| ..||+|++|++|++++.|+++++++.
T Consensus 795 lvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~ 829 (1495)
T PLN03232 795 LVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS 829 (1495)
T ss_pred EEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc
Confidence 88 45899999999999999999998753
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=252.63 Aligned_cols=176 Identities=14% Similarity=0.121 Sum_probs=131.8
Q ss_pred ceEEEEEEEEeecCC--------------eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEE
Q 024032 66 LNELRHKFLSYRSGD--------------FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF 130 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~--------------~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i 130 (273)
.++++|+++.|+... ..-...+|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 477888888886521 0001124999999999999999999999999999999999999 9999999
Q ss_pred CCeeCCCCCccEEEEeccchhhhccCCcccccccc-------cCCHHHH----HHHHHHhc---------ccCCHHHHHH
Q 024032 131 AQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR-------GFNYNRV----HEGLEELS---------SWMSEGVHHN 190 (273)
Q Consensus 131 ~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~-------~~~~~~~----~~~l~~~~---------~~LSgGqkq~ 190 (273)
+|. ++++.|+... ...+|+.+|. +...+.. .++++.++ ..||+||+||
T Consensus 84 ~g~--------~~~~~~~~~~----~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qr 151 (264)
T PRK13546 84 NGE--------VSVIAISAGL----SGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAK 151 (264)
T ss_pred CCE--------EeEEecccCC----CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHH
Confidence 985 2344444332 2334677663 2222222 23344332 6799999998
Q ss_pred H---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 191 Q---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 191 ~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
. ++ +.+|++|||||||++||+. +.+.++.++ |.|||++ .+||++++|++|+++..|+++++
T Consensus 152 v~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~-g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 230 (264)
T PRK13546 152 LGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ-NKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDV 230 (264)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHH
Confidence 6 33 7899999999999999998 334555444 8899888 46899999999999999999887
Q ss_pred cc
Q 024032 253 FS 254 (273)
Q Consensus 253 ~~ 254 (273)
+.
T Consensus 231 ~~ 232 (264)
T PRK13546 231 LP 232 (264)
T ss_pred HH
Confidence 64
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=305.06 Aligned_cols=181 Identities=13% Similarity=0.124 Sum_probs=150.0
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----C
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----S 138 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~ 138 (273)
...++++|++++|..+++.+ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|+++.. .
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~a----L~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~ 2010 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPA----VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDV 2010 (2272)
T ss_pred CceEEEEEEEEEECCCCceE----EEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHH
Confidence 45799999999996433556 999999999999999999999999999999999999 99999999998852 4
Q ss_pred CccEEEEeccchhhhccCCcccccccc-------cCCHH----HHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSR-------GFNYN----RVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~-------~~~~~----~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.+||++|+..+ +..+|++|+. +...+ .+.+.++.++ .+||||||||. ++ +
T Consensus 2011 r~~IGy~pQ~~~L----~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi 2086 (2272)
T TIGR01257 2011 HQNMGYCPQFDAI----DDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALI 2086 (2272)
T ss_pred hhhEEEEeccccC----CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHh
Confidence 5679999998875 3446898873 22222 3345566555 78999999987 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
.+|++|||||||+||||. +.++++.++ |+|||++ .+|||+++|++|+++..|+++++.
T Consensus 2087 ~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk 2158 (2272)
T TIGR01257 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLK 2158 (2272)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 899999999999999999 345666555 8999999 568999999999999999999874
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=276.49 Aligned_cols=177 Identities=11% Similarity=0.140 Sum_probs=140.1
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
..++++|+++ .+ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 256 ~~l~~~~l~~-------~~----l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~ 324 (501)
T PRK10762 256 VRLKVDNLSG-------PG----VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDG 324 (501)
T ss_pred cEEEEeCccc-------CC----cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 3688898874 23 999999999999999999999999999999999999 99999999998753
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC-------------C----HHHHHHHHHHhc----------ccCCHHHHHH
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------------N----YNRVHEGLEELS----------SWMSEGVHHN 190 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------------~----~~~~~~~l~~~~----------~~LSgGqkq~ 190 (273)
.++.++|++|++... .++..+|+.+|..+ . .+.+.++++.++ ..||||||||
T Consensus 325 ~~~~i~~v~q~~~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqr 403 (501)
T PRK10762 325 LANGIVYISEDRKRD-GLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQK 403 (501)
T ss_pred HHCCCEEecCccccC-CCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHH
Confidence 235699999986310 01344577776321 1 123455666654 5799999998
Q ss_pred H---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 191 Q---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 191 ~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
. |+ +.+|++|||||||+|||+. +.++++.++ |.|||++ .+||++++|++|+++..++++++
T Consensus 404 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 7 33 7899999999999999999 345666655 8999988 56899999999999999988876
Q ss_pred cc
Q 024032 253 FS 254 (273)
Q Consensus 253 ~~ 254 (273)
..
T Consensus 483 ~~ 484 (501)
T PRK10762 483 TQ 484 (501)
T ss_pred CH
Confidence 43
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=302.89 Aligned_cols=209 Identities=17% Similarity=0.153 Sum_probs=166.2
Q ss_pred hhhhhhccchhhhhhhhHHHHHHHhchhhhc------cCCCCceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcEEE
Q 024032 30 DECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITIL 102 (273)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~------~~~~~~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~~a 102 (273)
..++.....+.++..+.+|+.++++.++... ......++++|++|+|+.. ++++ |+|+||+|++|+.++
T Consensus 572 ~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~~v----L~~inl~i~~Ge~va 647 (1622)
T PLN03130 572 FMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPT----LSNINLDVPVGSLVA 647 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEEccCCCCCce----eeceeEEecCCCEEE
Confidence 3455556677889999999999987543210 1112369999999999743 3456 999999999999999
Q ss_pred EEcCCCChHHHHHHHHhhCcc-Cc-cEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc----CCHHHHHHHH
Q 024032 103 LMGFSGSGKSSLVNLMYSVLS-RS-GLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG----FNYNRVHEGL 176 (273)
Q Consensus 103 ivGpnGsGKSTLl~ll~gl~~-~~-G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~----~~~~~~~~~l 176 (273)
|+||||||||||+++|+|+++ .+ |+|.+ +..++|++|++.+ ++.||+||.. ++++++++++
T Consensus 648 IvG~sGSGKSTLl~lLlG~~~~~~GG~I~l--------~~~Iayv~Q~p~L-----fngTIreNI~fg~~~d~e~y~~vl 714 (1622)
T PLN03130 648 IVGSTGEGKTSLISAMLGELPPRSDASVVI--------RGTVAYVPQVSWI-----FNATVRDNILFGSPFDPERYERAI 714 (1622)
T ss_pred EECCCCCCHHHHHHHHHHhhccCCCceEEE--------cCeEEEEcCcccc-----CCCCHHHHHhCCCcccHHHHHHHH
Confidence 999999999999999999999 89 99985 4578999999984 5569999943 4566777777
Q ss_pred HHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH---HHHHHHHh--cCCcEEE
Q 024032 177 EELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK---SSPKYVLR--RVDFAMV 227 (273)
Q Consensus 177 ~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~---~~l~~l~~--~~g~tii 227 (273)
+.++ ..||||||||. |+ +++|+|+|||||||+||+. +.+....+ ..++|+|
T Consensus 715 ~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvI 794 (1622)
T PLN03130 715 DVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRV 794 (1622)
T ss_pred HHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEE
Confidence 7654 56999999987 55 8999999999999999998 22233211 1278998
Q ss_pred Ec-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 228 VS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 228 iv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
+| ..||+|++|++|++++.|+++++.+.
T Consensus 795 lVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~ 829 (1622)
T PLN03130 795 LVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN 829 (1622)
T ss_pred EEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc
Confidence 88 45899999999999999999998753
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=237.13 Aligned_cols=182 Identities=20% Similarity=0.236 Sum_probs=147.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC--------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG-------- 136 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~-------- 136 (273)
.|+++++++.|.. ..+ |.||+|+-+.||.+.++||||||||||++.+.-+.- .+|+..|.|....
T Consensus 2 sirv~~in~~yg~--~q~----lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k 75 (242)
T COG4161 2 SIQLNGINCFYGA--HQA----LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred ceEEccccccccc--chh----eeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHH
Confidence 4789999999843 334 999999999999999999999999999999998776 9999999886432
Q ss_pred ---CCCccEEEEeccchhhhccCCccccccc--------ccCCHHH----HHHHHHHhc---------ccCCHHHHHHH-
Q 024032 137 ---NSSHTITMYMEEHNVMRSLQSGFCVYDS--------RGFNYNR----VHEGLEELS---------SWMSEGVHHNQ- 191 (273)
Q Consensus 137 ---~~~~~i~~v~q~~~~~~~~~~~~tv~en--------~~~~~~~----~~~~l~~~~---------~~LSgGqkq~~- 191 (273)
.+|+.+|+|||+.+++|++ ||.+| .+.++++ ..+.++++. ..|||||+||.
T Consensus 76 ~i~~lr~~vgmvfqqy~lwphl----tv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrva 151 (242)
T COG4161 76 AIRDLRRNVGMVFQQYNLWPHL----TVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVA 151 (242)
T ss_pred HHHHHHHhhhhhhhhhccCchh----HHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHH
Confidence 2678899999999987765 99998 2344433 334444443 67999999987
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|+ +.+|++|++||||++|||+ ..++++..- |+|-+++ +.|.+++.|++|+|++.|++.- |+
T Consensus 152 iaralmmkpqvllfdeptaaldpeitaqvv~iikel~~t-gitqvivthev~va~k~as~vvyme~g~ive~g~a~~-ft 229 (242)
T COG4161 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAET-GITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC-FT 229 (242)
T ss_pred HHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhc-CceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh-cc
Confidence 44 7899999999999999999 557888754 9997777 5689999999999999999765 45
Q ss_pred ChhhH
Q 024032 255 APGLR 259 (273)
Q Consensus 255 ~~~l~ 259 (273)
+|..+
T Consensus 230 ~p~te 234 (242)
T COG4161 230 EPQTE 234 (242)
T ss_pred CccHH
Confidence 55444
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=276.06 Aligned_cols=181 Identities=12% Similarity=0.122 Sum_probs=140.8
Q ss_pred CceEEEEEEEEeec-CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCC----
Q 024032 65 GLNELRHKFLSYRS-GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~-g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~---- 137 (273)
.+++++|++++|.. +++.+ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~----l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~ 331 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKR----VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPA 331 (500)
T ss_pred ceEEEeCCcccccccccccc----cccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHH
Confidence 36899999998843 23446 999999999999999999999999999999999986 59999999998742
Q ss_pred --CCccEEEEeccchhhhccCCcccccccccC------------C----HHHHHHHHHHhc----------ccCCHHHHH
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSRGF------------N----YNRVHEGLEELS----------SWMSEGVHH 189 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~~~------------~----~~~~~~~l~~~~----------~~LSgGqkq 189 (273)
.++.+++++|++... .++..+|+++|..+ . .+.+.++++.++ ..|||||||
T Consensus 332 ~~~~~~i~~v~q~~~~~-~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 410 (500)
T TIGR02633 332 QAIRAGIAMVPEDRKRH-GIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQ 410 (500)
T ss_pred HHHhCCCEEcCcchhhC-CcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHH
Confidence 245789999986310 01334567666321 1 123455666655 579999999
Q ss_pred HH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhh
Q 024032 190 NQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKR 251 (273)
Q Consensus 190 ~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~ 251 (273)
|. |+ +.+|++|||||||++||+. +.++.++++ |.|||++ .+||++++|++|+++..++..+
T Consensus 411 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 411 KAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 87 33 7899999999999999999 335666655 8999888 5689999999999998776554
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=274.97 Aligned_cols=177 Identities=14% Similarity=0.204 Sum_probs=140.4
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
..++++|++++|. ++.+ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|. +.++
T Consensus 318 ~~l~~~~l~~~~~--~~~~----l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~------~~i~ 385 (530)
T PRK15064 318 NALEVENLTKGFD--NGPL----FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN------ANIG 385 (530)
T ss_pred ceEEEEeeEEeeC--Ccee----ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc------eEEE
Confidence 3689999999984 4556 999999999999999999999999999999999998 9999999874 4689
Q ss_pred EEeccchhhhccCCccccccccc------CCHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCCEEEEc
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRG------FNYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDDCALMK 203 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~------~~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~iLlLD 203 (273)
|++|++... +...+|+.+|.. ...+.+.+.++.++ .+||||||||. ++ +.+|++||||
T Consensus 386 ~~~q~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLD 463 (530)
T PRK15064 386 YYAQDHAYD--FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMD 463 (530)
T ss_pred EEccccccc--CCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999986421 123457777632 12345666666654 78999999987 33 7899999999
Q ss_pred CcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEe-eecChhhhccC
Q 024032 204 NDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSK-PLDATKRLFSA 255 (273)
Q Consensus 204 EPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~-~~g~~~~l~~~ 255 (273)
|||++||+. ..+.++.++.+.|||++ .+||++++|++|+++ ..|++.++++.
T Consensus 464 EPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 464 EPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 999999999 33333333335688888 568999999999998 78888887644
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=246.06 Aligned_cols=164 Identities=18% Similarity=0.179 Sum_probs=125.5
Q ss_pred ceEEEEEEEEeec---C--CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEEC--Ce--eC
Q 024032 66 LNELRHKFLSYRS---G--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFA--QT--SS 135 (273)
Q Consensus 66 ~i~~~~v~~~y~~---g--~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~--g~--~i 135 (273)
+++++|++++|.. + +..+ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++ |. ++
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~i----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~ 76 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPV----LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDL 76 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEE----EecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccch
Confidence 3789999999953 1 1356 999999999999999999999999999999999999 99999998 42 43
Q ss_pred CC---------CCccEEEEeccchhhhccCCccccccccc-------CC----HHHHHHHHHHhc----------ccCCH
Q 024032 136 GN---------SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FN----YNRVHEGLEELS----------SWMSE 185 (273)
Q Consensus 136 ~~---------~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~----~~~~~~~l~~~~----------~~LSg 185 (273)
.. .++.+++++|++.+ +..+|+.||.. .. .+.+.++++.++ .+|||
T Consensus 77 ~~~~~~~~~~~~~~~i~~~~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~ 152 (224)
T TIGR02324 77 AQASPREVLEVRRKTIGYVSQFLRV----IPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSG 152 (224)
T ss_pred hhcCHHHHHHHHhcceEEEeccccc----CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCH
Confidence 21 13468999998875 34447776621 11 123444555443 67999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEE
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKAL 238 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl 238 (273)
||+||. |+ +.+|++|||||||++||+. +.++++.++ |.|||++ .+||+++.+
T Consensus 153 G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 153 GEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR-GAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcceeEec
Confidence 999986 33 7899999999999999999 345555544 8899998 457888765
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=239.69 Aligned_cols=160 Identities=19% Similarity=0.205 Sum_probs=135.3
Q ss_pred EeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEecc
Q 024032 75 SYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEE 148 (273)
Q Consensus 75 ~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~ 148 (273)
.|..++..+ |+++||++.+||+++|.||||||||||+|+++.++. ++|.+++.|++++. +|.+++|+.|.
T Consensus 10 ~y~a~~a~i----l~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~ 85 (223)
T COG4619 10 GYLAGDAKI----LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQT 85 (223)
T ss_pred HhhcCCCee----ecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcC
Confidence 355566677 999999999999999999999999999999999999 99999999999874 67889999999
Q ss_pred chhhhccCCccccccccc---------CCHHHHHHHHHHhc----------ccCCHHHHHHHHh----cCCCCEEEEcCc
Q 024032 149 HNVMRSLQSGFCVYDSRG---------FNYNRVHEGLEELS----------SWMSEGVHHNQRC----LRSDDCALMKND 205 (273)
Q Consensus 149 ~~~~~~~~~~~tv~en~~---------~~~~~~~~~l~~~~----------~~LSgGqkq~~r~----l~~p~iLlLDEP 205 (273)
+.+ |+.||+||.- .+.+...+.+++++ ..|||||+||..+ ..-|+|||||||
T Consensus 86 paL-----fg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 86 PAL-----FGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred ccc-----cccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCc
Confidence 995 5569999943 34566667777776 6799999998744 468999999999
Q ss_pred CCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 206 AEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 206 ts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
||+||+. +++.++.++.+.++++| ++||+++-+..|.+
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 9999999 34555555558999998 67899999999876
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=249.76 Aligned_cols=169 Identities=18% Similarity=0.145 Sum_probs=132.4
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccE
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i 142 (273)
...++++++++. ++.+ |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++| .+
T Consensus 37 ~~~l~i~nls~~----~~~v----L~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--------~i 100 (282)
T cd03291 37 DNNLFFSNLCLV----GAPV----LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--------RI 100 (282)
T ss_pred CCeEEEEEEEEe----cccc----eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--------EE
Confidence 457999999984 2446 999999999999999999999999999999999999 999999988 38
Q ss_pred EEEeccchhhhccCCcccccccccC----CHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-c
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF----NYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~----~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l 194 (273)
+|++|++.++ ..|+++|..+ ....+.+.++.++ ..||+||+||. |+ +
T Consensus 101 ~yv~q~~~l~-----~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~ 175 (282)
T cd03291 101 SFSSQFSWIM-----PGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVY 175 (282)
T ss_pred EEEeCccccc-----ccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 9999987643 3488887432 1112222222211 47999999986 33 7
Q ss_pred CCCCEEEEcCcCCCCCHHH--HH-HHH---HhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 195 RSDDCALMKNDAEIDDLKS--SP-KYV---LRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~~--~l-~~l---~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
.+|++|||||||++||+.. .+ ..+ ..+ +.|||++ ..||++++|++|+++..|+++++..
T Consensus 176 ~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~-~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 176 KDADLYLLDSPFGYLDVFTEKEIFESCVCKLMA-NKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHhhC-CCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8999999999999999992 22 222 123 7898888 4589999999999999999999875
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=276.22 Aligned_cols=174 Identities=17% Similarity=0.129 Sum_probs=135.2
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
.+++++|++++|.. ++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.+++. ..++
T Consensus 5 ~~l~i~~l~~~y~~-~~~i----l~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~------~~i~ 73 (556)
T PRK11819 5 YIYTMNRVSKVVPP-KKQI----LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG------IKVG 73 (556)
T ss_pred EEEEEeeEEEEeCC-CCee----eeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------CEEE
Confidence 37999999999952 4567 999999999999999999999999999999999998 9999998752 4689
Q ss_pred EEeccchhhhccCCcccccccccCC-----------------------------------------------HHHHHHHH
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRGFN-----------------------------------------------YNRVHEGL 176 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~~~-----------------------------------------------~~~~~~~l 176 (273)
|++|++.++ ..+|+.||..+. .+++.+++
T Consensus 74 ~v~Q~~~~~----~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 149 (556)
T PRK11819 74 YLPQEPQLD----PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAM 149 (556)
T ss_pred EEecCCCCC----CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 999998653 345777774221 01223334
Q ss_pred HHhc--------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCE
Q 024032 177 EELS--------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEI 234 (273)
Q Consensus 177 ~~~~--------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~ 234 (273)
+.++ .+||||||||. ++ +.+|++|||||||++||+. ..+.++.++.+.|||+| ..||+
T Consensus 150 ~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~ 229 (556)
T PRK11819 150 DALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGW 229 (556)
T ss_pred HhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCe
Confidence 4433 67999999987 33 7899999999999999999 33433333335688888 56899
Q ss_pred EEEEeCCeEe-eecChhhhc
Q 024032 235 YKALKAGDSK-PLDATKRLF 253 (273)
Q Consensus 235 i~vl~~G~i~-~~g~~~~l~ 253 (273)
|++|++|+++ ..|+.+++.
T Consensus 230 i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 230 ILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred EEEEeCCEEEEecCCHHHHH
Confidence 9999999986 678777653
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=243.13 Aligned_cols=164 Identities=18% Similarity=0.264 Sum_probs=126.0
Q ss_pred EEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---------
Q 024032 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN--------- 137 (273)
Q Consensus 68 ~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~--------- 137 (273)
.+.++.++|+.+ .++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 2 ~~~~~~~~~~~~-~~i----l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (218)
T cd03290 2 QVTNGYFSWGSG-LAT----LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76 (218)
T ss_pred eeeeeEEecCCC-Ccc----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchh
Confidence 467888888643 456 999999999999999999999999999999999998 99999999987642
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC----CHHHHHHHHHHhc--------------------ccCCHHHHHHH--
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF----NYNRVHEGLEELS--------------------SWMSEGVHHNQ-- 191 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~----~~~~~~~~l~~~~--------------------~~LSgGqkq~~-- 191 (273)
.++.++|++|++.++ ..|+++|... ..+...++++.++ ..|||||+||.
T Consensus 77 ~~~~i~~~~q~~~~~-----~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~l 151 (218)
T cd03290 77 NRYSVAYAAQKPWLL-----NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICV 151 (218)
T ss_pred hcceEEEEcCCCccc-----cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHH
Confidence 235689999988642 4588887432 2223333333221 57999999987
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHHH--------HHHHHHhcCCcEEEEc-------eeCCEEEEEeCCe
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLKS--------SPKYVLRRVDFAMVVS-------NIAEIYKALKAGD 242 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~~--------~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~ 242 (273)
|+ +.+|++|||||||++||+.. .++.+. +.|.|+|++ ..||++++|++|.
T Consensus 152 aral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~-~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 152 ARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ-DDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHh-cCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 33 78999999999999999982 222333 347899888 4489999999873
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=276.03 Aligned_cols=187 Identities=11% Similarity=0.110 Sum_probs=144.3
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC-----
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS----- 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~----- 138 (273)
.+++++|+++ .+ |+++||+|++|+++||+||||||||||+|+|+|+++ ++|+|.++|.++...
T Consensus 267 ~~l~~~~l~~-------~~----l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~ 335 (510)
T PRK15439 267 PVLTVEDLTG-------EG----FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQR 335 (510)
T ss_pred ceEEEeCCCC-------CC----ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHH
Confidence 3688899873 13 999999999999999999999999999999999998 999999999987532
Q ss_pred -CccEEEEeccchhhhccCCccccccccc--------C---C---HHHHHHHHHHhc----------ccCCHHHHHHH--
Q 024032 139 -SHTITMYMEEHNVMRSLQSGFCVYDSRG--------F---N---YNRVHEGLEELS----------SWMSEGVHHNQ-- 191 (273)
Q Consensus 139 -~~~i~~v~q~~~~~~~~~~~~tv~en~~--------~---~---~~~~~~~l~~~~----------~~LSgGqkq~~-- 191 (273)
++.++|++|++.. +.++..+|+.+|.. . . .+.+.++++.++ ..||||||||.
T Consensus 336 ~~~~i~~v~q~~~~-~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~l 414 (510)
T PRK15439 336 LARGLVYLPEDRQS-SGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLI 414 (510)
T ss_pred HhCCcEECCCChhh-CCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHH
Confidence 3568999987421 01133446655521 0 1 123455666654 57999999987
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|+ +.+|++|||||||+|||+. +.++++.++ |.|||++ ++||++++|++|+++..++++++..+
T Consensus 415 a~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~~ 493 (510)
T PRK15439 415 AKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVD 493 (510)
T ss_pred HHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCHH
Confidence 33 7899999999999999999 345566555 8999998 56899999999999999999887655
Q ss_pred hhhHHHhCC
Q 024032 256 PGLRKCSKI 264 (273)
Q Consensus 256 ~~l~~~~~~ 264 (273)
+.+...|+.
T Consensus 494 ~~~~~~~~~ 502 (510)
T PRK15439 494 TIMRLAFGE 502 (510)
T ss_pred HHHHHhhcC
Confidence 556666643
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=303.44 Aligned_cols=179 Identities=11% Similarity=0.082 Sum_probs=149.7
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CC
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SS 139 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~ 139 (273)
..++++|+++.|..+++.+ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.. .+
T Consensus 927 ~~L~I~nLsK~y~~~~k~a----L~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r 1002 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPA----VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVR 1002 (2272)
T ss_pred ceEEEEeEEEEecCCCceE----EEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHh
Confidence 4799999999996445667 999999999999999999999999999999999998 99999999998853 45
Q ss_pred ccEEEEeccchhhhccCCccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~ 195 (273)
+.+++++|+..++ ..+||+||.. .. .+++.+.++.++ .+||||||||. ++ +.
T Consensus 1003 ~~IG~~pQ~~~L~----~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~ 1078 (2272)
T TIGR01257 1003 QSLGMCPQHNILF----HHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVG 1078 (2272)
T ss_pred hcEEEEecCCcCC----CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 6799999998753 4459999832 22 234566677665 68999999987 33 78
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
+|++|||||||+|||+. +.++++. + |+|||++ .+||||++|++|+++..|+++.+.
T Consensus 1079 ~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~-g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk 1148 (2272)
T TIGR01257 1079 DAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-S-GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLK 1148 (2272)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHh-C-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999 3455663 3 8999999 468999999999999999998774
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=239.12 Aligned_cols=175 Identities=16% Similarity=0.179 Sum_probs=142.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
.+.+++++.+|......+ |+++|++|.+||.++++||||||||||+|+++|+.+ ..|+|.++|+.+......-|.
T Consensus 3 ~l~~~~~sl~y~g~~~~~----le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergv 78 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSA----LEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGV 78 (259)
T ss_pred eeehhheEEecCCcchhh----hhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcccee
Confidence 456788999986433334 999999999999999999999999999999999999 999999999999876556689
Q ss_pred EeccchhhhccCCcccccccc-------cCCHH----HHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 145 YMEEHNVMRSLQSGFCVYDSR-------GFNYN----RVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~-------~~~~~----~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
|||++.++|++ ++.||. +.++. .+.+.+..++ .+||||||||. |+ ..+|++|
T Consensus 79 VFQ~~~LlPWl----~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~L 154 (259)
T COG4525 79 VFQNEALLPWL----NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLL 154 (259)
T ss_pred EeccCccchhh----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceE
Confidence 99999987665 999994 33332 3445555555 68999999986 55 6799999
Q ss_pred EEcCcCCCCCHH------HHHHHHHhcCCcEEEEce--------eCCEEEEEeC--CeEeeecC
Q 024032 201 LMKNDAEIDDLK------SSPKYVLRRVDFAMVVSN--------IAEIYKALKA--GDSKPLDA 248 (273)
Q Consensus 201 lLDEPts~LD~~------~~l~~l~~~~g~tiiiv~--------~ad~i~vl~~--G~i~~~g~ 248 (273)
+||||+++||.- +++.++.++.|+.+++|+ +|++++||+. |+|++.-+
T Consensus 155 lLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~ 218 (259)
T COG4525 155 LLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLP 218 (259)
T ss_pred eecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecC
Confidence 999999999998 345556677799999983 4799999974 88887544
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=273.63 Aligned_cols=176 Identities=15% Similarity=0.135 Sum_probs=139.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
.++++++++. .+ ++++||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|+++.. .
T Consensus 257 ~l~~~~~~~~------~~----l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 326 (501)
T PRK11288 257 RLRLDGLKGP------GL----REPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAI 326 (501)
T ss_pred EEEEeccccC------Cc----ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHH
Confidence 5788888732 25 999999999999999999999999999999999999 99999999998753 2
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-------------C----HHHHHHHHHHhc----------ccCCHHHHHHH
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------------N----YNRVHEGLEELS----------SWMSEGVHHNQ 191 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------------~----~~~~~~~l~~~~----------~~LSgGqkq~~ 191 (273)
++.++|++|++... .++..+|+.+|..+ . .+.+.+.++.++ ..||||||||.
T Consensus 327 ~~~i~~~~q~~~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl 405 (501)
T PRK11288 327 RAGIMLCPEDRKAE-GIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKA 405 (501)
T ss_pred hCCCEEcCcCHhhC-CCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHH
Confidence 35789999986400 01344578777321 1 123555666654 57999999987
Q ss_pred ---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 192 ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 192 ---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
++ +.+|++|||||||+|||+. +.++++.++ |.|||++ .+||++++|++|+++..|+++++.
T Consensus 406 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 406 ILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 33 7899999999999999999 335566655 8999999 568999999999999999887764
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=242.11 Aligned_cols=186 Identities=17% Similarity=0.211 Sum_probs=157.4
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECC-eeCCC-----
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ-TSSGN----- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g-~~i~~----- 137 (273)
..+++++++.+| ++..+ |+++||++.+||.-+|||||||||||++.+|+|-.+ ++|+++++| .++..
T Consensus 4 ~iL~~~~vsVsF--~GF~A----ln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~ 77 (249)
T COG4674 4 IILYLDGVSVSF--GGFKA----LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR 77 (249)
T ss_pred ceEEEeceEEEE--cceee----eeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHH
Confidence 468899999998 55555 999999999999999999999999999999999999 999999999 77764
Q ss_pred -CCccEEEEeccchhhhccCCccccccccc-------------------CCHHHHHHHHHHhc---------ccCCHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------------------FNYNRVHEGLEELS---------SWMSEGVH 188 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------------------~~~~~~~~~l~~~~---------~~LSgGqk 188 (273)
.+.-||.-||.|..|.. +||+||.. ...+++++.|+..+ ..||.|||
T Consensus 78 IAr~GIGRKFQ~PtVfe~----ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqK 153 (249)
T COG4674 78 IARAGIGRKFQKPTVFEN----LTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK 153 (249)
T ss_pred HHHhccCccccCCeehhh----ccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchh
Confidence 24568889999998654 49999821 12346777777666 78999999
Q ss_pred HHHHh----cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChh
Q 024032 189 HNQRC----LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATK 250 (273)
Q Consensus 189 q~~r~----l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~ 250 (273)
|+.-+ +++|++|+||||++|+--. ++++.+++ .++|++| .+|++|.||+.|.+.+.|+.+
T Consensus 154 QwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld 231 (249)
T COG4674 154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLD 231 (249)
T ss_pred hhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHHHHHhhheeEEEeccceeecccHH
Confidence 98743 7899999999999999666 56778876 6899999 678999999999999999999
Q ss_pred hhccChhhHHHh
Q 024032 251 RLFSAPGLRKCS 262 (273)
Q Consensus 251 ~l~~~~~l~~~~ 262 (273)
++-++|...++|
T Consensus 232 ~v~~dp~ViEvY 243 (249)
T COG4674 232 EVQNDPKVIEVY 243 (249)
T ss_pred HhhcCcceEeee
Confidence 999888877766
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=282.85 Aligned_cols=174 Identities=14% Similarity=0.119 Sum_probs=140.0
Q ss_pred EEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C--ccEEEECCeeCCC-CCccEEE
Q 024032 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R--SGLVLFAQTSSGN-SSHTITM 144 (273)
Q Consensus 69 ~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~--~G~I~i~g~~i~~-~~~~i~~ 144 (273)
.++++++| +++.+ |+++||++++||++||+||||||||||+++|+|+++ . +|+|.++|+++.. .+++++|
T Consensus 71 ~~~l~~~~--~~~~i----L~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~y 144 (659)
T PLN03211 71 ISDETRQI--QERTI----LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGF 144 (659)
T ss_pred cccccccC--CCCee----eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEE
Confidence 45666666 34567 999999999999999999999999999999999987 4 8999999998753 4567999
Q ss_pred EeccchhhhccCCccccccccc----------CCH----HHHHHHHHHhc--------------ccCCHHHHHHHH---h
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRG----------FNY----NRVHEGLEELS--------------SWMSEGVHHNQR---C 193 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~----------~~~----~~~~~~l~~~~--------------~~LSgGqkq~~r---~ 193 (273)
++|+..++ ..+||+||.. .+. +.+++.++.++ ..||||||||.. +
T Consensus 145 v~Q~~~l~----~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~a 220 (659)
T PLN03211 145 VTQDDILY----PHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 220 (659)
T ss_pred ECcccccC----CcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHH
Confidence 99998753 3458998732 122 23455666554 359999999872 2
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS---------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
+.+|++|+|||||+|||+. +.+++++++ |+|||++ +++|++++|++|+++..|+++++.
T Consensus 221 L~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~-g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 221 MLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK-GKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295 (659)
T ss_pred HHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHH
Confidence 7899999999999999999 345666654 8999999 347999999999999999998875
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=239.43 Aligned_cols=140 Identities=18% Similarity=0.212 Sum_probs=111.3
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------CCccEEEEeccchhhhccCCcc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-------SSHTITMYMEEHNVMRSLQSGF 159 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-------~~~~i~~v~q~~~~~~~~~~~~ 159 (273)
|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.+++++|++... .+..
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~---~~~~ 84 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ---LFAA 84 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhc---cccc
Confidence 999999999999999999999999999999999999 99999999998741 245689999987421 3345
Q ss_pred cccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH---
Q 024032 160 CVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--- 212 (273)
Q Consensus 160 tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--- 212 (273)
|++||..+ .. +++.++++.++ .+|||||+||. |+ +.+|++|||||||++||+.
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 164 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGRE 164 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 88887422 21 23455566554 68999999986 33 7899999999999999999
Q ss_pred ---HHHHHHHhcCCcEEEEcee
Q 024032 213 ---SSPKYVLRRVDFAMVVSNI 231 (273)
Q Consensus 213 ---~~l~~l~~~~g~tiiiv~~ 231 (273)
+.++++.++ |.|||++.|
T Consensus 165 ~~~~~l~~~~~~-~~tili~sH 185 (190)
T TIGR01166 165 QMLAILRRLRAE-GMTVVISTH 185 (190)
T ss_pred HHHHHHHHHHHc-CCEEEEEee
Confidence 345556554 889999854
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=275.34 Aligned_cols=198 Identities=13% Similarity=0.118 Sum_probs=154.7
Q ss_pred hhhhhhhhhccchhhhhhhhHHHHHHHhchhhh---------c----------------------cCCCCceEEEEEEEE
Q 024032 27 AKFDECVKLKLDLPNVSTLTPRLRVLREMERLA---------L----------------------IAPDGLNELRHKFLS 75 (273)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~---------~----------------------~~~~~~i~~~~v~~~ 75 (273)
..+..+.....+++++.++++|+.++++.++.. . ....+.++++|++++
T Consensus 381 ~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~ 460 (659)
T TIGR00954 381 DALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLV 460 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEE
Confidence 345566777788899999999999998753210 0 011246899999998
Q ss_pred eecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhc
Q 024032 76 YRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRS 154 (273)
Q Consensus 76 y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~ 154 (273)
|+. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.+++ ++.+++++|++.++
T Consensus 461 ~~~-~~~i----l~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~------~~~i~~v~Q~~~l~-- 527 (659)
T TIGR00954 461 TPN-GDVL----IESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA------KGKLFYVPQRPYMT-- 527 (659)
T ss_pred CCC-CCee----eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC------CCcEEEECCCCCCC--
Confidence 863 3456 999999999999999999999999999999999999 999998864 45799999998742
Q ss_pred cCCccccccccc------------CCHHHHHHHHHHhc------------------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 155 LQSGFCVYDSRG------------FNYNRVHEGLEELS------------------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 155 ~~~~~tv~en~~------------~~~~~~~~~l~~~~------------------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
..|++||.. ...+++.++++.++ ..||||||||. |+ +++|+++
T Consensus 528 ---~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~il 604 (659)
T TIGR00954 528 ---LGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFA 604 (659)
T ss_pred ---CcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEE
Confidence 338888832 23456666666654 36999999987 44 7999999
Q ss_pred EEcCcCCCCCHH--HHHHHHHhcCCcEEEEc-------eeCCEEEEEeC
Q 024032 201 LMKNDAEIDDLK--SSPKYVLRRVDFAMVVS-------NIAEIYKALKA 240 (273)
Q Consensus 201 lLDEPts~LD~~--~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~ 240 (273)
||||||++||+. +.+.++.++.|.|+|++ .+||++++|+.
T Consensus 605 lLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 605 ILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999999999999 33444434448999988 56899999963
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=257.08 Aligned_cols=190 Identities=22% Similarity=0.239 Sum_probs=153.7
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-----ccEEEECCeeCCC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-----SGLVLFAQTSSGN 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-----~G~I~i~g~~i~~ 137 (273)
..+++++|++.+|..++.++ .++++|||+|++||.+||||.||||||-..+.|.|+++ . +|+|.|+|+++-.
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~--~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTV--EAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred CcceeeeccEEEEecCCcce--EeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 45789999999998665554 45999999999999999999999999999999999986 2 7999999998742
Q ss_pred ---------CCccEEEEeccchhhhccCCccccccc--------ccCC----HHHHHHHHHHhc------------ccCC
Q 024032 138 ---------SSHTITMYMEEHNVMRSLQSGFCVYDS--------RGFN----YNRVHEGLEELS------------SWMS 184 (273)
Q Consensus 138 ---------~~~~i~~v~q~~~~~~~~~~~~tv~en--------~~~~----~~~~~~~l~~~~------------~~LS 184 (273)
...+|+++||+|..- +.+-.|+..- .+.+ ++++.+.++.++ .+||
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtS--LNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLS 159 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTS--LNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELS 159 (534)
T ss_pred CCHHHHhhhcccceEEEecccccc--cCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccC
Confidence 235799999998631 1111233221 2333 345556666666 8999
Q ss_pred HHHHHHH----HhcCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ----RCLRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~----r~l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
||||||+ +++.+|++||.||||++||.. ++++++.++.|+++++| ++||||+||.+|++++.
T Consensus 160 GGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~ 239 (534)
T COG4172 160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVET 239 (534)
T ss_pred cchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeec
Confidence 9999987 227899999999999999998 55788888889999999 67899999999999999
Q ss_pred cChhhhccChh
Q 024032 247 DATKRLFSAPG 257 (273)
Q Consensus 247 g~~~~l~~~~~ 257 (273)
|+++++|.+|.
T Consensus 240 ~~t~~lF~~Pq 250 (534)
T COG4172 240 GTTETLFAAPQ 250 (534)
T ss_pred CcHHHHhhCCC
Confidence 99999997653
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=271.38 Aligned_cols=173 Identities=17% Similarity=0.138 Sum_probs=133.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
+++++|++++|.. ++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.+++ ...++|
T Consensus 4 ~i~~~nls~~~~~-~~~i----l~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~------~~~i~~ 72 (552)
T TIGR03719 4 IYTMNRVSKVVPP-KKEI----LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP------GIKVGY 72 (552)
T ss_pred EEEEeeEEEecCC-CCee----ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC------CCEEEE
Confidence 6899999999952 3567 999999999999999999999999999999999998 999999875 246899
Q ss_pred EeccchhhhccCCcccccccccCC----------------------H-------------------------HHHHHHHH
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGFN----------------------Y-------------------------NRVHEGLE 177 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~~----------------------~-------------------------~~~~~~l~ 177 (273)
++|++.++ ..+|+.||..+. . .++.++++
T Consensus 73 v~Q~~~~~----~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 148 (552)
T TIGR03719 73 LPQEPQLD----PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMD 148 (552)
T ss_pred EeccCCCC----CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHh
Confidence 99998653 345787774221 0 01122233
Q ss_pred Hhc--------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEE
Q 024032 178 ELS--------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIY 235 (273)
Q Consensus 178 ~~~--------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i 235 (273)
.++ .+||||||||. ++ +.+|++|||||||++||+. ..+.++.++.+.|||+| .+||++
T Consensus 149 ~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v 228 (552)
T TIGR03719 149 ALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWI 228 (552)
T ss_pred hCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeE
Confidence 322 67999999987 33 7899999999999999999 33433333335688888 568999
Q ss_pred EEEeCCeEe-eecChhhhc
Q 024032 236 KALKAGDSK-PLDATKRLF 253 (273)
Q Consensus 236 ~vl~~G~i~-~~g~~~~l~ 253 (273)
++|++|+++ ..|+.+++.
T Consensus 229 ~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 229 LELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred EEEECCEEEEecCCHHHHH
Confidence 999999976 678877654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=292.62 Aligned_cols=209 Identities=14% Similarity=0.152 Sum_probs=163.4
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchhhhcc---------CCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCc
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMERLALI---------APDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVI 99 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---------~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge 99 (273)
+..++.....+.++..+.+|+.++++.++.... .....++++|++|+|+.+.+++ |+|+||++++|+
T Consensus 590 l~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----l~~isl~i~~G~ 665 (1522)
T TIGR00957 590 LNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDLPPT----LNGITFSIPEGA 665 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCCCCce----eeeeEEEEcCCC
Confidence 445666667788999999999999875432110 0113699999999996544556 999999999999
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccC----CHHHHHH
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGF----NYNRVHE 174 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~----~~~~~~~ 174 (273)
+++|+||||||||||+++|+|+++ ++|+|.++| .++|++|++.+ +..|++||..+ +.++.++
T Consensus 666 ~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------~i~yv~Q~~~l-----~~~Ti~eNI~~g~~~~~~~~~~ 732 (1522)
T TIGR00957 666 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--------SVAYVPQQAWI-----QNDSLRENILFGKALNEKYYQQ 732 (1522)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--------EEEEEcCCccc-----cCCcHHHHhhcCCccCHHHHHH
Confidence 999999999999999999999999 999999987 48999999874 45699999532 3344444
Q ss_pred HHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH---HHHHHHH----hcCC
Q 024032 175 GLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK---SSPKYVL----RRVD 223 (273)
Q Consensus 175 ~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~---~~l~~l~----~~~g 223 (273)
+++.+. .+||||||||. |+ +++|+++||||||++||+. ..++.+. ...+
T Consensus 733 ~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~ 812 (1522)
T TIGR00957 733 VLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKN 812 (1522)
T ss_pred HHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcC
Confidence 333221 57999999987 44 8999999999999999999 2223331 1127
Q ss_pred cEEEEc-------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 224 FAMVVS-------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 224 ~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
+|+|++ ..||+|++|++|++++.|+++++.+
T Consensus 813 ~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 813 KTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred CEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 899888 4489999999999999999999874
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=273.03 Aligned_cols=179 Identities=20% Similarity=0.240 Sum_probs=146.2
Q ss_pred ceEEEEEEEEeecC--CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC----
Q 024032 66 LNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS---- 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g--~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~---- 138 (273)
+++++|+++.|+.+ ..++ |+++||++++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...
T Consensus 4 ~l~~~nl~~~y~~~~~~~~i----l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEV----LKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADA 79 (648)
T ss_pred EEEEeeEEEEeCCCCCCeee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHH
Confidence 68999999999643 2456 999999999999999999999999999999999999 999999999987631
Q ss_pred -----CccEEEEeccchhhhccCCccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH--
Q 024032 139 -----SHTITMYMEEHNVMRSLQSGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ-- 191 (273)
Q Consensus 139 -----~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~-- 191 (273)
++.+++++|++.++ ...|+.||.. .. .+++.+.++.++ .+||+||+||.
T Consensus 80 ~~~~~~~~i~~v~q~~~l~----~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~L 155 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLL----SHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSI 155 (648)
T ss_pred HHHHHhccEEEEeCCcccC----CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHH
Confidence 45799999998753 3457777632 12 223455566554 77999999986
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
|+ +++|++|||||||++||+. +.++++.++ |.|++++ ..||++++|++|++++.|++++..
T Consensus 156 AraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~-g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 156 ARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDR-GHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 33 7899999999999999999 345555544 8899888 558999999999999999998875
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=265.74 Aligned_cols=176 Identities=15% Similarity=0.125 Sum_probs=133.4
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCC-----
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~----- 137 (273)
..++++|++++|. ++.+ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++..
T Consensus 259 ~~l~~~~l~~~~~--~~~i----l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~ 332 (490)
T PRK10938 259 PRIVLNNGVVSYN--DRPI----LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIW 332 (490)
T ss_pred ceEEEeceEEEEC--CeeE----EeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHH
Confidence 4799999999984 4556 999999999999999999999999999999999876 49999999986531
Q ss_pred -CCccEEEEeccchhhhccCCcccccccc--------c----CC---HHHHHHHHHHhc----------ccCCHHHHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSR--------G----FN---YNRVHEGLEELS----------SWMSEGVHHNQ 191 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~--------~----~~---~~~~~~~l~~~~----------~~LSgGqkq~~ 191 (273)
.++.+++++|++..+.. ...++.++. . .. .+.+.++++.++ .+||||||||.
T Consensus 333 ~~~~~i~~v~q~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 410 (490)
T PRK10938 333 DIKKHIGYVSSSLHLDYR--VSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLA 410 (490)
T ss_pred HHHhhceEECHHHHhhcc--cCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHH
Confidence 34579999998654211 112333321 0 11 234556666654 68999999987
Q ss_pred ---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------e-eCCEEEEEeCCeEeeecC
Q 024032 192 ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------N-IAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 192 ---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~-~ad~i~vl~~G~i~~~g~ 248 (273)
++ +.+|++|||||||+|||+. +.+++++++.+.|||++ . .||++++|++|++++...
T Consensus 411 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 411 LIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEeec
Confidence 33 7899999999999999999 34566665523568877 3 479999999999987543
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=233.98 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=118.9
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC-CccEEE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS-SHTITM 144 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~-~~~i~~ 144 (273)
+++++++++|. ++.+ ++ +||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++... ++.+++
T Consensus 2 l~~~~l~~~~~--~~~l----~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIE--QKNL----FD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTY 74 (195)
T ss_pred eEEEEeeEEEC--CcEE----EE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEe
Confidence 68999999994 3444 54 999999999999999999999999999999999 999999999987543 345788
Q ss_pred EeccchhhhccCCcccccccccC------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCc
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGF------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKND 205 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEP 205 (273)
++|+... ++..|+.+|..+ ..+.+.++++.++ ..||+||+||. |+ +++|+++|||||
T Consensus 75 ~~~~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP 150 (195)
T PRK13541 75 IGHNLGL----KLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEV 150 (195)
T ss_pred ccCCcCC----CccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 8877643 456788887422 2234555555554 67999999986 33 789999999999
Q ss_pred CCCCCHH------HHHHHHHhcCCcEEEEcee
Q 024032 206 AEIDDLK------SSPKYVLRRVDFAMVVSNI 231 (273)
Q Consensus 206 ts~LD~~------~~l~~l~~~~g~tiiiv~~ 231 (273)
|++||+. +.++...+ .+.|+|++.|
T Consensus 151 ~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh 181 (195)
T PRK13541 151 ETNLSKENRDLLNNLIVMKAN-SGGIVLLSSH 181 (195)
T ss_pred cccCCHHHHHHHHHHHHHHHh-CCCEEEEEeC
Confidence 9999999 22333333 3889998843
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=267.88 Aligned_cols=178 Identities=13% Similarity=0.168 Sum_probs=135.5
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC-----
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS----- 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~----- 138 (273)
..++++|+++.| +.+ |+++||+|++||++||+||||||||||+++|+|+.+ ++|+|.++|+++...
T Consensus 249 ~~i~~~~l~~~~----~~~----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 320 (491)
T PRK10982 249 VILEVRNLTSLR----QPS----IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEA 320 (491)
T ss_pred cEEEEeCccccc----Ccc----cceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHH
Confidence 468999999873 235 999999999999999999999999999999999999 999999999987532
Q ss_pred -CccEEEEeccchhhhccCCccccccc-----c-------cC-C----HHHHHHHHHHhc----------ccCCHHHHHH
Q 024032 139 -SHTITMYMEEHNVMRSLQSGFCVYDS-----R-------GF-N----YNRVHEGLEELS----------SWMSEGVHHN 190 (273)
Q Consensus 139 -~~~i~~v~q~~~~~~~~~~~~tv~en-----~-------~~-~----~~~~~~~l~~~~----------~~LSgGqkq~ 190 (273)
++.++|++|++... .++..+++.+| . +. . .+.+.+.++.++ .+||||||||
T Consensus 321 ~~~~i~~~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 399 (491)
T PRK10982 321 INHGFALVTEERRST-GIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQK 399 (491)
T ss_pred HHCCCEEcCCchhhC-CcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHH
Confidence 34588998875310 01122233222 1 11 1 123444555543 6899999998
Q ss_pred H---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 191 Q---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 191 ~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
. |+ +.+|++|||||||+|||+. +.++.+.++ |.|||++ .+||++++|++|+++..++.+++
T Consensus 400 v~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~-~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 400 VIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTT 478 (491)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC-CCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 7 33 7899999999999999999 335556655 8999998 67899999999999988776543
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-32 Score=261.04 Aligned_cols=174 Identities=16% Similarity=0.230 Sum_probs=133.6
Q ss_pred CceEEEEEEEEeecCC-eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccE
Q 024032 65 GLNELRHKFLSYRSGD-FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~-~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i 142 (273)
.+++++|+++.|..+. +++ |+++||+|++|+++||+||||||||||+++|+|+++ ++|+|.++|.+. .+
T Consensus 20 ~mL~lknL~~~~~~~~~~~I----L~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~-----~i 90 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYA----LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA-----LI 90 (549)
T ss_pred ceeEEEEEEEecCCCccceE----EeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee-----eE
Confidence 3688999998886532 346 999999999999999999999999999999999998 999999999752 11
Q ss_pred EEEeccchhhhccCCccccccccc-------CCHHH----HHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRG-------FNYNR----VHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~-------~~~~~----~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
+ +...+ ...+|+++|.. .+.++ +.++++.++ ..||||||||. |+ +.+|+
T Consensus 91 ~---~~~~l----~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~ 163 (549)
T PRK13545 91 A---ISSGL----NGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPD 163 (549)
T ss_pred E---ecccc----CCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 1 11111 23347777632 22222 334455444 67999999986 33 78999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
+|||||||++||+. +.++++.++ |.|||++ .+||++++|++|+++..|++++++..
T Consensus 164 LLLLDEPTsgLD~~sr~~LlelL~el~~~-G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 164 ILVIDEALSVGDQTFTKKCLDKMNEFKEQ-GKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 99999999999999 334555444 8899888 46899999999999999999888653
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-32 Score=222.16 Aligned_cols=129 Identities=22% Similarity=0.321 Sum_probs=108.3
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v 145 (273)
++++++++.|. +.++ ++++||++++||+++|+||||||||||+++|+|+++ ++|+|+++|. ..++|+
T Consensus 1 l~~~~l~~~~~--~~~~----l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~------~~i~~~ 68 (144)
T cd03221 1 IELENLSKTYG--GKLL----LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST------VKIGYF 68 (144)
T ss_pred CEEEEEEEEEC--CceE----EEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe------EEEEEE
Confidence 46899999884 3456 999999999999999999999999999999999999 9999999985 356666
Q ss_pred eccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHHHH
Q 024032 146 MEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKYVL 219 (273)
Q Consensus 146 ~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~l~ 219 (273)
+| ||+||+||. |+ +++|+++||||||++||+. ..+.++.
T Consensus 69 ~~-----------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l 113 (144)
T cd03221 69 EQ-----------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEAL 113 (144)
T ss_pred cc-----------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 65 999999986 33 7899999999999999999 3333333
Q ss_pred hcCCcEEEEc--------eeCCEEEEEeCCe
Q 024032 220 RRVDFAMVVS--------NIAEIYKALKAGD 242 (273)
Q Consensus 220 ~~~g~tiiiv--------~~ad~i~vl~~G~ 242 (273)
++.+.|++++ .+||++++|++|+
T Consensus 114 ~~~~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 114 KEYPGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 3336788888 4589999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=268.69 Aligned_cols=175 Identities=18% Similarity=0.183 Sum_probs=135.5
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
..++++|++++| +++.+ |+++||+|++|+++||+||||||||||+++|+|+++ ++|+|.+++. ..++
T Consensus 311 ~~l~~~~l~~~y--~~~~i----l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~ig 378 (638)
T PRK10636 311 PLLKMEKVSAGY--GDRII----LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG------IKLG 378 (638)
T ss_pred ceEEEEeeEEEe--CCeee----eccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC------EEEE
Confidence 368999999998 45667 999999999999999999999999999999999998 9999999642 2589
Q ss_pred EEeccchhhhccCCcccccccc-----cCCHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCCEEEEcC
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSR-----GFNYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDDCALMKN 204 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~-----~~~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~iLlLDE 204 (273)
|++|+.... +....++.++. ......+.+.++.++ ..||||||||+ ++ +.+|++|||||
T Consensus 379 y~~Q~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE 456 (638)
T PRK10636 379 YFAQHQLEF--LRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE 456 (638)
T ss_pred EecCcchhh--CCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999974211 12233555542 112345566666655 67999999987 33 78999999999
Q ss_pred cCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEe-eecChhhhc
Q 024032 205 DAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSK-PLDATKRLF 253 (273)
Q Consensus 205 Pts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~-~~g~~~~l~ 253 (273)
||++||+. ..+..+.++.+.|||+| .+||++++|++|+++ ..|+.+++.
T Consensus 457 Pt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 457 PTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999 33333333335588888 568999999999997 788888763
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-31 Score=262.41 Aligned_cols=176 Identities=15% Similarity=0.155 Sum_probs=135.3
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
.+++++|++++|. ++++ |+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.+++ + ..++
T Consensus 323 ~~l~~~~l~~~~~--~~~~----l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~-----~~i~ 390 (556)
T PRK11819 323 KVIEAENLSKSFG--DRLL----IDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T-----VKLA 390 (556)
T ss_pred eEEEEEeEEEEEC--Ceee----ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c-----eEEE
Confidence 4799999999984 4567 999999999999999999999999999999999999 999999854 2 2589
Q ss_pred EEeccchhhhccCCcccccccccC---------CHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRGF---------NYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~~---------~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
|++|+... ++..+|+++|..+ ......++++.++ .+||||||||. ++ +.+|++|
T Consensus 391 ~v~q~~~~---~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 467 (556)
T PRK11819 391 YVDQSRDA---LDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVL 467 (556)
T ss_pred EEeCchhh---cCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99998622 2445688887321 1223445565554 68999999987 33 7899999
Q ss_pred EEcCcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC-CeEe-eecChhhhccC
Q 024032 201 LMKNDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIYKALKA-GDSK-PLDATKRLFSA 255 (273)
Q Consensus 201 lLDEPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~-G~i~-~~g~~~~l~~~ 255 (273)
||||||+|||+. ..+.++.++...|||++ .+||++++|++ |++. ..|+.+++++.
T Consensus 468 lLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 468 LLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999 33333333333477777 56899999986 7876 47888777643
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-32 Score=250.47 Aligned_cols=150 Identities=19% Similarity=0.319 Sum_probs=122.5
Q ss_pred EEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccEEEEeccchhhhccCCcccccccccC-------CH--
Q 024032 103 LMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------NY-- 169 (273)
Q Consensus 103 ivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~~-- 169 (273)
|+||||||||||+++|+|+++ ++|+|.++|+++.. .++.++|++|++.++ ..+||++|..+ ..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~----~~~tv~enl~~~~~~~~~~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALF----PHMTVEENVAFGLKMRKVPRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccc----CCCcHHHHHHHHHhhcCCCHHH
Confidence 689999999999999999999 99999999998754 346799999998754 44589988432 21
Q ss_pred --HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEE
Q 024032 170 --NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVV 228 (273)
Q Consensus 170 --~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiii 228 (273)
+++.++++.++ .+||||||||. |+ +.+|++|||||||++||+. +.++++.++.|.|+|+
T Consensus 77 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiii 156 (325)
T TIGR01187 77 IKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVF 156 (325)
T ss_pred HHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 23556666664 67999999987 33 7899999999999999999 3355565555899999
Q ss_pred c--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 229 S--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 229 v--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+ .+||++++|++|+++..|++++++..+
T Consensus 157 vTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~ 192 (325)
T TIGR01187 157 VTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP 192 (325)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 8 468999999999999999999998654
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=262.51 Aligned_cols=174 Identities=14% Similarity=0.147 Sum_probs=133.5
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
.+++++|++++|. ++++ |+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.+++ + ..++
T Consensus 321 ~~l~~~~l~~~~~--~~~~----l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~-----~~i~ 388 (552)
T TIGR03719 321 KVIEAENLSKGFG--DKLL----IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T-----VKLA 388 (552)
T ss_pred eEEEEeeEEEEEC--Ceee----eccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c-----eEEE
Confidence 4689999999984 4567 999999999999999999999999999999999998 999999844 2 2589
Q ss_pred EEeccchhhhccCCcccccccccC-------C--HHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRGF-------N--YNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~~-------~--~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
|++|++.. ++..+|+.+|..+ . ...+.+.++.++ .+||||||||. ++ +.+|++|
T Consensus 389 ~v~q~~~~---~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~ll 465 (552)
T TIGR03719 389 YVDQSRDA---LDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVL 465 (552)
T ss_pred EEeCCccc---cCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 99998632 1445688887321 1 223445566554 68999999987 33 7899999
Q ss_pred EEcCcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC-CeEe-eecChhhhc
Q 024032 201 LMKNDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIYKALKA-GDSK-PLDATKRLF 253 (273)
Q Consensus 201 lLDEPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~-G~i~-~~g~~~~l~ 253 (273)
||||||++||+. ..+.++.++.+.|||++ .+||++++|++ |+++ ..|+.+++.
T Consensus 466 lLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 466 LLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence 999999999999 33333333334478777 56899999986 5776 567776654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=266.56 Aligned_cols=173 Identities=16% Similarity=0.170 Sum_probs=135.1
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
.+++++|++++| +++++ |+++||+|++|+++||+||||||||||+++|+|+++ ++|+|.+ |.++ .++
T Consensus 318 ~~l~~~~l~~~~--~~~~i----l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~-----~i~ 385 (635)
T PRK11147 318 IVFEMENVNYQI--DGKQL----VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL-----EVA 385 (635)
T ss_pred ceEEEeeeEEEE--CCeEE----EcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-----EEE
Confidence 368999999998 44667 999999999999999999999999999999999998 9999998 5432 589
Q ss_pred EEeccchhhhccCCcccccccccC-------C--HHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRGF-------N--YNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~~-------~--~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
|++|+... +...+||.+|... . ...+.+.++.++ ..||||||||. ++ +.+|++|
T Consensus 386 y~~q~~~~---l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lL 462 (635)
T PRK11147 386 YFDQHRAE---LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLL 462 (635)
T ss_pred EEeCcccc---cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99997532 2445588887321 1 234555565544 67999999987 33 7899999
Q ss_pred EEcCcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEEEEEe-CCeEee-ecChhhh
Q 024032 201 LMKNDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIYKALK-AGDSKP-LDATKRL 252 (273)
Q Consensus 201 lLDEPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i~vl~-~G~i~~-~g~~~~l 252 (273)
||||||++||+. ..+.++.++.+.|||+| .+||++++|+ +|++.. .|+-.+.
T Consensus 463 lLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 463 ILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 999999999999 44555444446688888 5689999998 899876 4555554
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-32 Score=233.59 Aligned_cols=194 Identities=14% Similarity=0.170 Sum_probs=144.7
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSH 140 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~ 140 (273)
+++++..+.|..| .+.+..+|+++|++|++|+++.|+|.||||||||+|+|+|-+. ++|+|.|+|.++.. ...
T Consensus 2 i~~~~~~~~f~~g-~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 2 ISLSNATKTFFKG-TPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred cccccceeeecCC-ChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 4567777777554 2333456999999999999999999999999999999999999 99999999999975 334
Q ss_pred cEEEEeccchhhhccCCcccccccc----------cCC-------HHHHHHHHHHhc-----------ccCCHHHHHHHH
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSR----------GFN-------YNRVHEGLEELS-----------SWMSEGVHHNQR 192 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~----------~~~-------~~~~~~~l~~~~-----------~~LSgGqkq~~r 192 (273)
.++-|||+|..- ....+|+.||. ++. .+...+.++.++ ..|||||||...
T Consensus 81 ~larVfQdp~~g--t~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQals 158 (263)
T COG1101 81 LLARVFQDPLAG--TAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALS 158 (263)
T ss_pred HHHHHhcchhhC--CcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHH
Confidence 577899998642 34567999992 222 122334444444 679999999763
Q ss_pred h----cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChh--hh
Q 024032 193 C----LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATK--RL 252 (273)
Q Consensus 193 ~----l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~--~l 252 (273)
+ ++.|+||+|||-|++|||. +.-.++.++.+.|.+|| ++-+|.++|++|+|+.+-+-+ .-
T Consensus 159 L~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~~k~~ 238 (263)
T COG1101 159 LLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEEKAS 238 (263)
T ss_pred HHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcccccccC
Confidence 2 8999999999999999999 22244556668899999 456999999999999764332 22
Q ss_pred ccChhhHHHhC
Q 024032 253 FSAPGLRKCSK 263 (273)
Q Consensus 253 ~~~~~l~~~~~ 263 (273)
+..+.+...|.
T Consensus 239 L~v~dli~~F~ 249 (263)
T COG1101 239 LTVLDLIQMFE 249 (263)
T ss_pred CcHHHHHHHHH
Confidence 34444554443
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=237.95 Aligned_cols=154 Identities=15% Similarity=0.147 Sum_probs=117.9
Q ss_pred eeeeeeEEc-----CCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccc
Q 024032 88 IQKGGMDIP-----PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCV 161 (273)
Q Consensus 88 L~~is~~i~-----~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv 161 (273)
+++++|++. +||+++|+||||||||||+++|+|+++ ++|+|.++|. .+++++|+... .+..||
T Consensus 10 ~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-------~i~~~~q~~~~----~~~~tv 78 (246)
T cd03237 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-------TVSYKPQYIKA----DYEGTV 78 (246)
T ss_pred cCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-------eEEEecccccC----CCCCCH
Confidence 677777765 799999999999999999999999999 9999999885 57889888764 345688
Q ss_pred cccccC-------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHH
Q 024032 162 YDSRGF-------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSP 215 (273)
Q Consensus 162 ~en~~~-------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l 215 (273)
.||... ......++++.++ ..|||||+||. ++ +.+|+++||||||++||+. +.+
T Consensus 79 ~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l 158 (246)
T cd03237 79 RDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVI 158 (246)
T ss_pred HHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 887421 1122345555554 68999999987 33 7899999999999999999 345
Q ss_pred HHHHhcCCcEEEEc--------eeCCEEEEEeCCeEe--eecChhhh
Q 024032 216 KYVLRRVDFAMVVS--------NIAEIYKALKAGDSK--PLDATKRL 252 (273)
Q Consensus 216 ~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~--~~g~~~~l 252 (273)
+++.++.+.|||++ .+||++++|+++..+ ..++++++
T Consensus 159 ~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 159 RRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 56655448899999 468999999765443 34555554
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-32 Score=238.99 Aligned_cols=165 Identities=16% Similarity=0.149 Sum_probs=125.9
Q ss_pred cceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCccEEEEeccchhhhccCCccc
Q 024032 86 GGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSHTITMYMEEHNVMRSLQSGFC 160 (273)
Q Consensus 86 ~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~~i~~v~q~~~~~~~~~~~~t 160 (273)
.|++|+||+|++|++++++|||||||||++|+|+|++. ++|.|.++|.+... .-+++++|+.+.... ...+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql---~Wdlp 114 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQL---WWDLP 114 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhhee---eeech
Confidence 46999999999999999999999999999999999998 99999999987643 224566665544321 00111
Q ss_pred cccc-------ccCCHHHHHHHHHHhc-------------ccCCHHHHHHH--Hh--cCCCCEEEEcCcCCCCCHH----
Q 024032 161 VYDS-------RGFNYNRVHEGLEELS-------------SWMSEGVHHNQ--RC--LRSDDCALMKNDAEIDDLK---- 212 (273)
Q Consensus 161 v~en-------~~~~~~~~~~~l~~~~-------------~~LSgGqkq~~--r~--l~~p~iLlLDEPts~LD~~---- 212 (273)
+.+. ...+.++..+.++.+. ..||.|||.|. ++ +++|++|+|||||-|||..
T Consensus 115 ~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ 194 (325)
T COG4586 115 ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQAN 194 (325)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHH
Confidence 1111 1233344433333322 67999998765 22 8999999999999999998
Q ss_pred --HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 213 --SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 213 --~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
+.+++.+++++.||+++ .+||||++|++|+++.+|+.+++.
T Consensus 195 ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~ 245 (325)
T COG4586 195 IREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ 245 (325)
T ss_pred HHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHH
Confidence 45677888889999999 678999999999999999988764
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=226.92 Aligned_cols=190 Identities=16% Similarity=0.224 Sum_probs=151.4
Q ss_pred CceEEEEEEEEeecC-----CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC--
Q 024032 65 GLNELRHKFLSYRSG-----DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG-- 136 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g-----~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~-- 136 (273)
.+++++|++++|.+. ...+ .|++.|||++++|+.+||||.||||||||.|+|+|+++ ++|+|.++|+.+.
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~--~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~ 80 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTV--EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFG 80 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhh--hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCcccccc
Confidence 467889999988763 2222 46999999999999999999999999999999999999 9999999999874
Q ss_pred ---CCCccEEEEeccchhh--hccCCccccccc-----ccC----CHHHHHHHHHHhc----------ccCCHHHHHHH-
Q 024032 137 ---NSSHTITMYMEEHNVM--RSLQSGFCVYDS-----RGF----NYNRVHEGLEELS----------SWMSEGVHHNQ- 191 (273)
Q Consensus 137 ---~~~~~i~~v~q~~~~~--~~~~~~~tv~en-----~~~----~~~~~~~~l~~~~----------~~LSgGqkq~~- 191 (273)
...++|.++||+++.- |++. -.++.|. ..+ ..+++.+.+..++ ..||-|||||+
T Consensus 81 Dy~~R~k~IRMiFQDpnts~NPRl~-iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVa 159 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNTSLNPRLR-IGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVA 159 (267)
T ss_pred chHhhhhheeeeecCCccccChhhh-hhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHH
Confidence 2457899999998742 1110 0122222 122 2345667788877 67999999987
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|+ +-+|+|+|.||..++||.. ++..++.++.|.+-|.| .++|.|+||+.|++++.|++.++++
T Consensus 160 LARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a 239 (267)
T COG4167 160 LARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLA 239 (267)
T ss_pred HHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhc
Confidence 44 6899999999999999998 33456777779999998 6789999999999999999999998
Q ss_pred Chh
Q 024032 255 APG 257 (273)
Q Consensus 255 ~~~ 257 (273)
+|.
T Consensus 240 ~P~ 242 (267)
T COG4167 240 SPL 242 (267)
T ss_pred CCc
Confidence 764
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-31 Score=229.27 Aligned_cols=177 Identities=15% Similarity=0.119 Sum_probs=139.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC--cc-CccEEEECCeeCCC-----
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV--LS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl--~~-~~G~I~i~g~~i~~----- 137 (273)
+++++|++.+.... +.+ |+++||+|++||+.+|+||||||||||.++|+|. |+ ++|+|.++|+++.+
T Consensus 3 ~L~I~dLhv~v~~~-keI----LkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~E 77 (251)
T COG0396 3 MLEIKDLHVEVEGK-KEI----LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDE 77 (251)
T ss_pred eeEEeeeEEEecCc-hhh----hcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhH
Confidence 68999999987421 467 9999999999999999999999999999999997 56 89999999999975
Q ss_pred -CCccEEEEeccchhhhccCCcccccccc--------c------CCHHHHHHHHHHhc-----------ccCCHHHHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSR--------G------FNYNRVHEGLEELS-----------SWMSEGVHHNQ 191 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~--------~------~~~~~~~~~l~~~~-----------~~LSgGqkq~~ 191 (273)
.+.-+..-||.|.-++. .++.+.. . ...+++++.++.++ ..||||||+|.
T Consensus 78 RAr~GifLafQ~P~ei~G----V~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~ 153 (251)
T COG0396 78 RARAGIFLAFQYPVEIPG----VTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRN 153 (251)
T ss_pred HHhcCCEEeecCCccCCC----eeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHH
Confidence 23456777898886443 3544431 1 11334555566555 67999999875
Q ss_pred ----HhcCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEcee---------CCEEEEEeCCeEeeecChhhh
Q 024032 192 ----RCLRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVSNI---------AEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 192 ----r~l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv~~---------ad~i~vl~~G~i~~~g~~~~l 252 (273)
.++.+|++.|||||-||||.. +.+..++.+ |.++++|+| .|++.||-+|+|+..|.+ ++
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~-~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el 231 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE-GRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-EL 231 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC-CCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HH
Confidence 337899999999999999999 335667665 888888822 499999999999999998 55
Q ss_pred c
Q 024032 253 F 253 (273)
Q Consensus 253 ~ 253 (273)
.
T Consensus 232 ~ 232 (251)
T COG0396 232 A 232 (251)
T ss_pred H
Confidence 4
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-31 Score=262.67 Aligned_cols=176 Identities=16% Similarity=0.128 Sum_probs=127.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
+|.++|++++| +++++ |+++||+|++|+++||+||||||||||||+|+|+++ ++|+|.++|.. .+++
T Consensus 1 ~i~i~nls~~~--g~~~~----l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~------~i~~ 68 (638)
T PRK10636 1 MIVFSSLQIRR--GVRVL----LDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW------QLAW 68 (638)
T ss_pred CEEEEEEEEEe--CCcee----ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC------EEEE
Confidence 47899999999 45667 999999999999999999999999999999999988 99999998752 2555
Q ss_pred Eeccchhhhc-----c------CCccccc--------------------ccc-c-CCHHHHHHHHHHhc----------c
Q 024032 145 YMEEHNVMRS-----L------QSGFCVY--------------------DSR-G-FNYNRVHEGLEELS----------S 181 (273)
Q Consensus 145 v~q~~~~~~~-----~------~~~~tv~--------------------en~-~-~~~~~~~~~l~~~~----------~ 181 (273)
+.|+...+.. . +..++.. +.. . ....++.++++.++ .
T Consensus 69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 148 (638)
T PRK10636 69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS 148 (638)
T ss_pred EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchh
Confidence 5553211000 0 0000000 000 0 01234556666655 5
Q ss_pred cCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEe-ee
Q 024032 182 WMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSK-PL 246 (273)
Q Consensus 182 ~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~-~~ 246 (273)
.||||||||+ ++ +.+|++|||||||++||+. ..+..+.++.+.|||+| .+||++++|++|+++ ..
T Consensus 149 ~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~ 228 (638)
T PRK10636 149 DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYT 228 (638)
T ss_pred hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEec
Confidence 7999999987 33 7899999999999999999 33444444446788888 568999999999996 45
Q ss_pred cChhhhc
Q 024032 247 DATKRLF 253 (273)
Q Consensus 247 g~~~~l~ 253 (273)
|+.....
T Consensus 229 g~~~~~~ 235 (638)
T PRK10636 229 GNYSSFE 235 (638)
T ss_pred CCHHHHH
Confidence 6665543
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=283.11 Aligned_cols=177 Identities=14% Similarity=0.092 Sum_probs=143.5
Q ss_pred ceEEEEEEEEeec--CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc----CccEEEECCeeCC-CC
Q 024032 66 LNELRHKFLSYRS--GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS----RSGLVLFAQTSSG-NS 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~--g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~----~~G~I~i~g~~i~-~~ 138 (273)
.++++|++++|++ +++.+ |+|||+++++||++||+||||||||||+++|+|+.+ ++|+|.++|+++. ..
T Consensus 759 ~l~~~nl~~~~~~~~~~~~i----L~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVI----LNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEe----eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhh
Confidence 4689999999864 23556 999999999999999999999999999999999975 5799999999885 45
Q ss_pred CccEEEEeccchhhhccCCccccccccc----------CCH----HHHHHHHHHhc---------c----cCCHHHHHHH
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRG----------FNY----NRVHEGLEELS---------S----WMSEGVHHNQ 191 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~----------~~~----~~~~~~l~~~~---------~----~LSgGqkq~~ 191 (273)
++.++|++|++.+ ++.+||+||.. .+. +.++++++.++ . .||||||||.
T Consensus 835 ~~~i~yv~Q~~~~----~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl 910 (1394)
T TIGR00956 835 QRSIGYVQQQDLH----LPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRL 910 (1394)
T ss_pred hcceeeecccccC----CCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHH
Confidence 6789999998764 45669999832 122 23556666665 2 6999999987
Q ss_pred H---h-cCCCC-EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeCC-eEeeecChh
Q 024032 192 R---C-LRSDD-CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS---------NIAEIYKALKAG-DSKPLDATK 250 (273)
Q Consensus 192 r---~-l~~p~-iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~G-~i~~~g~~~ 250 (273)
. + +.+|+ +|+|||||+|||+. +.+++++++ |+|||++ ..+|++++|++| ++++.|++.
T Consensus 911 ~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~-g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 911 TIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH-GQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred HHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 2 2 78997 99999999999999 445666554 8999998 247999999987 999999875
Q ss_pred h
Q 024032 251 R 251 (273)
Q Consensus 251 ~ 251 (273)
+
T Consensus 990 ~ 990 (1394)
T TIGR00956 990 E 990 (1394)
T ss_pred c
Confidence 4
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=281.55 Aligned_cols=205 Identities=14% Similarity=0.077 Sum_probs=158.0
Q ss_pred hhhhhccchhhhhhhhHHHHHHHhchhhhcc---CCCCceEEEEEEEEeecC----------------------------
Q 024032 31 ECVKLKLDLPNVSTLTPRLRVLREMERLALI---APDGLNELRHKFLSYRSG---------------------------- 79 (273)
Q Consensus 31 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~~~~i~~~~v~~~y~~g---------------------------- 79 (273)
.++.....+.++..+..|+.+++..++.... .....++++|++|+|...
T Consensus 354 ~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (1490)
T TIGR01271 354 QFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSN 433 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCceEEecceEecCCccccccccccccccccccccccccccccc
Confidence 4555556667789999999999876543211 112358999999998421
Q ss_pred ----CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhc
Q 024032 80 ----DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRS 154 (273)
Q Consensus 80 ----~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~ 154 (273)
.++ +|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++| .++|++|++.+
T Consensus 434 ~s~~~~~----~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--------~iayv~Q~~~l--- 498 (1490)
T TIGR01271 434 FSLYVTP----VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--------RISFSPQTSWI--- 498 (1490)
T ss_pred cccccCc----ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC--------EEEEEeCCCcc---
Confidence 112 4999999999999999999999999999999999999 999999988 48999999875
Q ss_pred cCCcccccccccC----CHHHHHHHHHHh--------------------cccCCHHHHHHH---Hh-cCCCCEEEEcCcC
Q 024032 155 LQSGFCVYDSRGF----NYNRVHEGLEEL--------------------SSWMSEGVHHNQ---RC-LRSDDCALMKNDA 206 (273)
Q Consensus 155 ~~~~~tv~en~~~----~~~~~~~~l~~~--------------------~~~LSgGqkq~~---r~-l~~p~iLlLDEPt 206 (273)
++.||+||..+ +.+...++++.+ +..||||||||. |+ +++|+++||||||
T Consensus 499 --~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~ 576 (1490)
T TIGR01271 499 --MPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 576 (1490)
T ss_pred --CCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 34599999532 222222222211 157999999987 44 7999999999999
Q ss_pred CCCCHH--H-H----HHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 207 EIDDLK--S-S----PKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 207 s~LD~~--~-~----l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
++||+. . . +..+. + |+|+|++ ..||+|++|++|+++..|+++++..
T Consensus 577 saLD~~~~~~i~~~~l~~~~-~-~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 577 THLDVVTEKEIFESCLCKLM-S-NKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred ccCCHHHHHHHHHHHHHHHh-c-CCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999 2 2 22333 2 8899999 4489999999999999999999875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=266.91 Aligned_cols=165 Identities=16% Similarity=0.130 Sum_probs=135.6
Q ss_pred CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C---ccEEEECCeeCC--CCCccEEEEeccchhhh
Q 024032 80 DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSG--NSSHTITMYMEEHNVMR 153 (273)
Q Consensus 80 ~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~---~G~I~i~g~~i~--~~~~~i~~v~q~~~~~~ 153 (273)
++++ |+|+|+++++||++||+||||||||||+++|+|..+ . +|+|.++|.++. ..++.++|++|++.+
T Consensus 37 ~~~i----L~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~-- 110 (617)
T TIGR00955 37 RKHL----LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLF-- 110 (617)
T ss_pred cccc----ccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeecccccc--
Confidence 4556 999999999999999999999999999999999876 4 799999999875 356789999999875
Q ss_pred ccCCccccccccc----------CC----HHHHHHHHHHhc---------c------cCCHHHHHHH---Hh-cCCCCEE
Q 024032 154 SLQSGFCVYDSRG----------FN----YNRVHEGLEELS---------S------WMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 154 ~~~~~~tv~en~~----------~~----~~~~~~~l~~~~---------~------~LSgGqkq~~---r~-l~~p~iL 200 (273)
+..+||+||.. .+ .+.+++.++.++ . .||||||||. ++ +.+|+++
T Consensus 111 --~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 111 --IPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL 188 (617)
T ss_pred --CccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence 44569999832 11 123566666655 2 4999999987 22 7999999
Q ss_pred EEcCcCCCCCHH------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 201 LMKNDAEIDDLK------SSPKYVLRRVDFAMVVS---------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 201 lLDEPts~LD~~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
+|||||+|||+. +.+++++++ |+|||++ ..+|++++|++|++++.|+++++.
T Consensus 189 llDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred EeeCCCcchhHHHHHHHHHHHHHHHhC-CCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 999999999999 445666655 8999888 457999999999999999998874
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=231.96 Aligned_cols=178 Identities=18% Similarity=0.163 Sum_probs=137.7
Q ss_pred CCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC-----
Q 024032 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG----- 136 (273)
Q Consensus 63 ~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~----- 136 (273)
.+.+|+++|+++.| +++++ |+++|++|++||.++|+||||||||||+++++|.++ ++|.+.+.|+...
T Consensus 28 ~~~li~l~~v~v~r--~gk~i----L~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~ 101 (257)
T COG1119 28 NEPLIELKNVSVRR--NGKKI----LGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETI 101 (257)
T ss_pred CcceEEecceEEEE--CCEee----ccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcch
Confidence 34579999999998 56888 999999999999999999999999999999999999 9999999998664
Q ss_pred -CCCccEEEEeccchhhhccCCccccccc------------c-cCC---HHHHHHHHHHhc---------ccCCHHHHHH
Q 024032 137 -NSSHTITMYMEEHNVMRSLQSGFCVYDS------------R-GFN---YNRVHEGLEELS---------SWMSEGVHHN 190 (273)
Q Consensus 137 -~~~~~i~~v~q~~~~~~~~~~~~tv~en------------~-~~~---~~~~~~~l~~~~---------~~LSgGqkq~ 190 (273)
++|++||+|...... .+....+++|. . ..+ .+++...++.++ ..||-|||||
T Consensus 102 ~elrk~IG~vS~~L~~--~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rr 179 (257)
T COG1119 102 FELRKRIGLVSSELHE--RFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRR 179 (257)
T ss_pred HHHHHHhCccCHHHHh--hcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHH
Confidence 478899998765332 11223345543 1 122 334556667666 7899999997
Q ss_pred H---Hh-cCCCCEEEEcCcCCCCCHHH------HHHHHHh-cCCcEEEEce--------eCCEEEEEeCCeEeeecC
Q 024032 191 Q---RC-LRSDDCALMKNDAEIDDLKS------SPKYVLR-RVDFAMVVSN--------IAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 191 ~---r~-l~~p~iLlLDEPts~LD~~~------~l~~l~~-~~g~tiiiv~--------~ad~i~vl~~G~i~~~g~ 248 (273)
. |+ +++|++||||||++|||... .+.++.. ..+.++|+|. ..++++.+++|+++.+|.
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 6 55 89999999999999999992 2344432 2356788882 248899999999998874
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-31 Score=260.99 Aligned_cols=164 Identities=18% Similarity=0.140 Sum_probs=132.5
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
..++++|++++|. + .. |+++||+|++||++||+||||||||||+++|+|+++ ++|+|.++ ..++
T Consensus 339 ~~l~~~~ls~~~~--~-~~----l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~--------~~i~ 403 (590)
T PRK13409 339 TLVEYPDLTKKLG--D-FS----LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE--------LKIS 403 (590)
T ss_pred eEEEEcceEEEEC--C-EE----EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--------eeEE
Confidence 4689999999884 2 24 999999999999999999999999999999999999 99999985 2589
Q ss_pred EEeccchhhhccCCcccccccccC------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcC
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRGF------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKN 204 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~~------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDE 204 (273)
|++|+... .+.+||.+|... ....+.++++.++ .+||||||||. ++ +++|++|||||
T Consensus 404 y~~Q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDE 479 (590)
T PRK13409 404 YKPQYIKP----DYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDE 479 (590)
T ss_pred EecccccC----CCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99998764 456688887432 1223456666665 78999999987 33 78999999999
Q ss_pred cCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 205 DAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 205 Pts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
||++||+. +.+++++++.|.|||++ .+||++++|++ ++...|+
T Consensus 480 Pt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 480 PSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999 34566655558899988 56899999965 7776665
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=261.52 Aligned_cols=170 Identities=14% Similarity=0.174 Sum_probs=132.2
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
..++++|++++|+. +..+ |+++||+|++|++++|+||||||||||+|+|+|+++ ++|+|.+++. .+++
T Consensus 507 ~~L~~~~ls~~y~~-~~~i----l~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~------~~ig 575 (718)
T PLN03073 507 PIISFSDASFGYPG-GPLL----FKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK------VRMA 575 (718)
T ss_pred ceEEEEeeEEEeCC-CCee----EeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc------eeEE
Confidence 47999999999942 3456 999999999999999999999999999999999999 9999998652 4689
Q ss_pred EEeccchhhhccCCccccccc---------ccCCHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 144 MYMEEHNVMRSLQSGFCVYDS---------RGFNYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en---------~~~~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
|++|++.. .+ ++.++ .....+.+.++++.++ ..||||||||. ++ +.+|++|
T Consensus 576 yv~Q~~~~--~l----~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lL 649 (718)
T PLN03073 576 VFSQHHVD--GL----DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIL 649 (718)
T ss_pred EEeccccc--cC----CcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEE
Confidence 99987521 11 12111 1234556677777665 67999999987 33 7899999
Q ss_pred EEcCcCCCCCHH---HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEe-eecChhhh
Q 024032 201 LMKNDAEIDDLK---SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSK-PLDATKRL 252 (273)
Q Consensus 201 lLDEPts~LD~~---~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~-~~g~~~~l 252 (273)
||||||++||+. .+++.+.+. +.|||+| .+||++++|++|+++ ..|+..+.
T Consensus 650 LLDEPT~~LD~~s~~~l~~~L~~~-~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 650 LLDEPSNHLDLDAVEALIQGLVLF-QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999 333444432 3488888 568999999999998 67776654
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=263.23 Aligned_cols=191 Identities=17% Similarity=0.165 Sum_probs=153.3
Q ss_pred ceEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc----CccEEEECCeeCC--
Q 024032 66 LNELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS----RSGLVLFAQTSSG-- 136 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~----~~G~I~i~g~~i~-- 136 (273)
.+.+++++.+..... +++ |++||.++++||++||+|||||||||||++|+|... .+|+|.+||+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~i----L~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~ 100 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTI----LKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSR 100 (613)
T ss_pred eeEEEEEEEEecCCCCcccee----eeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchh
Confidence 577888888776542 556 999999999999999999999999999999999874 5899999996543
Q ss_pred CCCccEEEEeccchhhhccCCcccccccc----------cCC----HHHHHHHHHHhc--------------ccCCHHHH
Q 024032 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSR----------GFN----YNRVHEGLEELS--------------SWMSEGVH 188 (273)
Q Consensus 137 ~~~~~i~~v~q~~~~~~~~~~~~tv~en~----------~~~----~~~~~~~l~~~~--------------~~LSgGqk 188 (273)
..++..+||.|+..+ ...+||+|+. ..+ .+++++.+++++ ..+|||||
T Consensus 101 ~~~~~s~yV~QdD~l----~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGEr 176 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVL----LPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGER 176 (613)
T ss_pred hhhheeEEEcccccc----cccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchh
Confidence 467888999998886 4455999972 112 344666666666 35999999
Q ss_pred HHHHh----cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeCCeEeeecCh
Q 024032 189 HNQRC----LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS---------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 189 q~~r~----l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+|... +++|.+|+|||||+|||.. +.+++++++ |+|||++ +..|++++|.+|+++..|++
T Consensus 177 kRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 177 KRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSP 255 (613)
T ss_pred hHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCH
Confidence 98732 8999999999999999999 557888888 9999999 55799999999999999999
Q ss_pred hhhccChhhHHHhCCceEE
Q 024032 250 KRLFSAPGLRKCSKISFCI 268 (273)
Q Consensus 250 ~~l~~~~~l~~~~~~~~~~ 268 (273)
+++.. .-...|.|++-
T Consensus 256 ~~~~~---ff~~~G~~~P~ 271 (613)
T KOG0061|consen 256 RELLE---FFSSLGFPCPE 271 (613)
T ss_pred HHHHH---HHHhCCCCCCC
Confidence 87642 33444555443
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=227.76 Aligned_cols=153 Identities=12% Similarity=0.062 Sum_probs=113.5
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEE-ECCeeCCCCCccEEEEeccchhhhccCCccccccc
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL-FAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~-i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en 164 (273)
+|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|. ++|..+. +.+++.+ +..+|+.||
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~--------~~~~~~l----~~~ltv~en 69 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP--------LGANSFI----LPGLTGEEN 69 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec--------ccccccc----CCcCcHHHH
Confidence 3999999999999999999999999999999999998 999997 7765431 1122222 344578877
Q ss_pred cc-------CCHHHHHHHH-HHh---------cccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHHHH------HHH
Q 024032 165 RG-------FNYNRVHEGL-EEL---------SSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLKSS------PKY 217 (273)
Q Consensus 165 ~~-------~~~~~~~~~l-~~~---------~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~~~------l~~ 217 (273)
.. ...+++.+.+ +.. ...||+|||||. ++ +.+|+++||||||+++|+... +.+
T Consensus 70 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~ 149 (213)
T PRK15177 70 ARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALAC 149 (213)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHH
Confidence 32 2222222222 111 168999999986 33 789999999999999999822 222
Q ss_pred HHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 218 VLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 218 l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
..+ +.|+|++ .+||++++|++|++++.++.++..
T Consensus 150 ~~~--~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 150 QLQ--QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred Hhh--CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 222 4677777 568999999999999999888763
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=220.90 Aligned_cols=135 Identities=13% Similarity=0.131 Sum_probs=108.1
Q ss_pred EEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEecc
Q 024032 70 RHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEE 148 (273)
Q Consensus 70 ~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~ 148 (273)
.|++++| +++.+ ++++ |++++||+++|+||||||||||+|+|+|+++ ++|+|.++|.+ +++++|+
T Consensus 4 ~~l~~~~--~~~~~----l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-------i~~~~q~ 69 (177)
T cd03222 4 PDCVKRY--GVFFL----LVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-------PVYKPQY 69 (177)
T ss_pred CCeEEEE--CCEEE----EccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-------EEEEccc
Confidence 4678887 45666 8884 9999999999999999999999999999999 99999999864 5666553
Q ss_pred chhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHH
Q 024032 149 HNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYV 218 (273)
Q Consensus 149 ~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l 218 (273)
.. ||||||||. |+ +.+|+++||||||++||+. +.+.++
T Consensus 70 ~~--------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~ 117 (177)
T cd03222 70 ID--------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRL 117 (177)
T ss_pred CC--------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 21 999999986 33 7899999999999999999 234555
Q ss_pred HhcCCcEEEEc--------eeCCEEEEEeCCeEeee--cChh
Q 024032 219 LRRVDFAMVVS--------NIAEIYKALKAGDSKPL--DATK 250 (273)
Q Consensus 219 ~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~--g~~~ 250 (273)
.++.+.|||++ .+||++++|+++-.+.. |.|.
T Consensus 118 ~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 118 SEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence 44424888888 46899999998765533 4444
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=237.85 Aligned_cols=166 Identities=14% Similarity=0.145 Sum_probs=123.2
Q ss_pred EEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEE-----------ECCeeCCCC
Q 024032 71 HKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL-----------FAQTSSGNS 138 (273)
Q Consensus 71 ~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~-----------i~g~~i~~~ 138 (273)
+++++|+. +..+ |+++|+ +++|++++|+||||||||||+|+|+|+++ ++|+|+ ++|+++...
T Consensus 5 ~~~~~y~~-~~~~----l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~ 78 (255)
T cd03236 5 EPVHRYGP-NSFK----LHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNY 78 (255)
T ss_pred CcceeecC-cchh----hhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhh
Confidence 57788842 2235 999995 99999999999999999999999999999 999996 778876431
Q ss_pred ----C---ccEEEEeccchhhhccCCcccccccccC--CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCC
Q 024032 139 ----S---HTITMYMEEHNVMRSLQSGFCVYDSRGF--NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 139 ----~---~~i~~v~q~~~~~~~~~~~~tv~en~~~--~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~ 196 (273)
+ ..+++++|....++. .+..++.+|... ..+.+.++++.++ ..||+|||||. |+ +.+
T Consensus 79 ~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~ 157 (255)
T cd03236 79 FTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARD 157 (255)
T ss_pred hHHhhhcccceeeecchhccCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 1 136777787665432 233344444211 1244566666665 67999999986 33 789
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~ 245 (273)
|+++||||||++||+. +.++++.++ +.|||++ .+||++++|+ |++.+
T Consensus 158 p~illlDEPts~LD~~~~~~l~~~l~~l~~~-~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~ 218 (255)
T cd03236 158 ADFYFFDEPSSYLDIKQRLNAARLIRELAED-DNYVLVVEHDLAVLDYLSDYIHCLY-GEPGA 218 (255)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEC-CCCCc
Confidence 9999999999999999 345666554 8899988 4689999995 55654
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=258.93 Aligned_cols=182 Identities=17% Similarity=0.198 Sum_probs=125.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeC-C-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS-G-----NS 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i-~-----~~ 138 (273)
+++++|++++|. ++++ |+++||+|++|+++||+||||||||||+|+|+|+++ ++|+|.++|... . ..
T Consensus 3 ~l~i~~ls~~~~--~~~i----l~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~ 76 (635)
T PRK11147 3 LISIHGAWLSFS--DAPL----LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPP 76 (635)
T ss_pred EEEEeeEEEEeC--Ccee----EeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCC
Confidence 589999999994 4567 999999999999999999999999999999999998 999999987321 0 00
Q ss_pred CccEEEEeccch-----h------hhcc---CCcccccccc--------------c-CCHHHHHHHHHHhc-------cc
Q 024032 139 SHTITMYMEEHN-----V------MRSL---QSGFCVYDSR--------------G-FNYNRVHEGLEELS-------SW 182 (273)
Q Consensus 139 ~~~i~~v~q~~~-----~------~~~~---~~~~tv~en~--------------~-~~~~~~~~~l~~~~-------~~ 182 (273)
+..+++++|... . +..+ ....+..+|. . ....++.++++.++ ..
T Consensus 77 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 156 (635)
T PRK11147 77 RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSS 156 (635)
T ss_pred CCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhh
Confidence 111122222110 0 0000 0000001110 0 01234566666665 68
Q ss_pred CCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee-ec
Q 024032 183 MSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP-LD 247 (273)
Q Consensus 183 LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~-~g 247 (273)
||||||||+ ++ +.+|++|||||||++||+. ..+..+.++.+.|||+| .+||+|++|++|+++. .|
T Consensus 157 LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g 236 (635)
T PRK11147 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPG 236 (635)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 999999987 33 7899999999999999999 33444433445688888 5689999999999974 57
Q ss_pred Chhhhc
Q 024032 248 ATKRLF 253 (273)
Q Consensus 248 ~~~~l~ 253 (273)
+..+++
T Consensus 237 ~~~~~~ 242 (635)
T PRK11147 237 NYDQYL 242 (635)
T ss_pred CHHHHH
Confidence 766554
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=211.45 Aligned_cols=132 Identities=19% Similarity=0.229 Sum_probs=109.5
Q ss_pred EEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccE
Q 024032 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTI 142 (273)
Q Consensus 69 ~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i 142 (273)
++++++.|. +..+ |+++||++++|++++|+||||||||||+++|+|+++ ++|+|+++|.++.. .++.+
T Consensus 2 ~~~~~~~~~--~~~~----l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i 75 (157)
T cd00267 2 IENLSFRYG--GRTA----LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRI 75 (157)
T ss_pred eEEEEEEeC--Ceee----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhce
Confidence 678889884 3456 999999999999999999999999999999999999 99999999987653 22445
Q ss_pred EEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------ 212 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------ 212 (273)
++++| ||+||+||. ++ +.+|++++|||||++||+.
T Consensus 76 ~~~~q-----------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~ 120 (157)
T cd00267 76 GYVPQ-----------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLL 120 (157)
T ss_pred EEEee-----------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 55555 999999986 33 7899999999999999999
Q ss_pred HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCe
Q 024032 213 SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGD 242 (273)
Q Consensus 213 ~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~ 242 (273)
+.+.++.+. +.|++++ ..||++++|++|+
T Consensus 121 ~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 121 ELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 334445444 6888888 4579999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-30 Score=272.52 Aligned_cols=177 Identities=12% Similarity=0.095 Sum_probs=141.7
Q ss_pred ceEEEEEEEEeec-----------CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc---CccEEEEC
Q 024032 66 LNELRHKFLSYRS-----------GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFA 131 (273)
Q Consensus 66 ~i~~~~v~~~y~~-----------g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~---~~G~I~i~ 131 (273)
.+.++|+++++.. +++.+ |+|+|+++++|+++||+|||||||||||++|+|..+ .+|+|.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~i----L~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~in 942 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQL----LREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRIS 942 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceE----eeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEEC
Confidence 5889999998753 22345 999999999999999999999999999999999865 58999999
Q ss_pred CeeCCC--CCccEEEEeccchhhhccCCcccccccccC----------CHH----HHHHHHHHhc--------------c
Q 024032 132 QTSSGN--SSHTITMYMEEHNVMRSLQSGFCVYDSRGF----------NYN----RVHEGLEELS--------------S 181 (273)
Q Consensus 132 g~~i~~--~~~~i~~v~q~~~~~~~~~~~~tv~en~~~----------~~~----~~~~~l~~~~--------------~ 181 (273)
|.+... .++.++|++|+..+ +..+||+||..+ +.+ .+++.++.++ .
T Consensus 943 G~~~~~~~~~~~igyv~Q~d~~----~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~ 1018 (1470)
T PLN03140 943 GFPKKQETFARISGYCEQNDIH----SPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVT 1018 (1470)
T ss_pred CccCChHHhhhheEEEcccccc----CCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCC
Confidence 988753 45678999998775 445699998321 211 2556666655 2
Q ss_pred cCCHHHHHHHH---h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeC-C
Q 024032 182 WMSEGVHHNQR---C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS---------NIAEIYKALKA-G 241 (273)
Q Consensus 182 ~LSgGqkq~~r---~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~-G 241 (273)
.||||||||.. + +.+|++|+|||||+|||+. +.+++++++ |.|||++ ..+|++++|++ |
T Consensus 1019 ~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~~gG 1097 (1470)
T PLN03140 1019 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1097 (1470)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEcCCC
Confidence 69999999872 2 7999999999999999999 446667655 8999998 35799999986 8
Q ss_pred eEeeecChhh
Q 024032 242 DSKPLDATKR 251 (273)
Q Consensus 242 ~i~~~g~~~~ 251 (273)
+++..|++.+
T Consensus 1098 ~~v~~G~~~~ 1107 (1470)
T PLN03140 1098 QVIYSGPLGR 1107 (1470)
T ss_pred EEEEECCccc
Confidence 9999998653
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=265.01 Aligned_cols=205 Identities=18% Similarity=0.182 Sum_probs=169.3
Q ss_pred hhhhccchhhhhhhhHHHHHHHhchhhh---c-----cCCCCceEEEEEEEEeecCC-eeeeccceeeeeeEEcCCcEEE
Q 024032 32 CVKLKLDLPNVSTLTPRLRVLREMERLA---L-----IAPDGLNELRHKFLSYRSGD-FWIPIGGIQKGGMDIPPVITIL 102 (273)
Q Consensus 32 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~---~-----~~~~~~i~~~~v~~~y~~g~-~~v~~~~L~~is~~i~~Ge~~a 102 (273)
++.....+.++..+.+|+...+..++.. . ...+..+++++.++++...+ .+. |+||||+|++|+.+|
T Consensus 476 ~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~t----L~dIn~~i~~G~lva 551 (1381)
T KOG0054|consen 476 LPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPT----LKDINFEIKKGQLVA 551 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCccc----ccceeEEecCCCEEE
Confidence 4445566678899999999998866532 1 12245799999999987532 234 999999999999999
Q ss_pred EEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc----cCCHHHHHHHHH
Q 024032 103 LMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR----GFNYNRVHEGLE 177 (273)
Q Consensus 103 ivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~----~~~~~~~~~~l~ 177 (273)
|+||-|||||||+.+|.|.++ .+|++.++|. ++|++|++.+ ++.||+||. .+++++.+++++
T Consensus 552 VvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs--------iaYv~Q~pWI-----~ngTvreNILFG~~~d~~rY~~Vi~ 618 (1381)
T KOG0054|consen 552 VVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS--------VAYVPQQPWI-----QNGTVRENILFGSPYDEERYDKVIK 618 (1381)
T ss_pred EECCCCCCHHHHHHHHhcCcccccceEEEcCe--------EEEeccccHh-----hCCcHHHhhhcCccccHHHHHHHHH
Confidence 999999999999999999999 9999999886 7999999985 456999994 456777888877
Q ss_pred Hhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH---HH----HHHHHhcCCcEE
Q 024032 178 ELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK---SS----PKYVLRRVDFAM 226 (273)
Q Consensus 178 ~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~---~~----l~~l~~~~g~ti 226 (273)
... .+||||||||. || .++++|+|||.|+|++|.. +. ++.+.+ ++|+
T Consensus 619 aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~--~KT~ 696 (1381)
T KOG0054|consen 619 ACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLR--GKTV 696 (1381)
T ss_pred HccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhc--CCEE
Confidence 665 57999999986 55 7999999999999999999 33 333434 7899
Q ss_pred EEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 227 VVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 227 iiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|+| .+||.|++|++|+|++.|+.+|+.+.
T Consensus 697 ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~ 732 (1381)
T KOG0054|consen 697 ILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKS 732 (1381)
T ss_pred EEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhc
Confidence 999 66999999999999999999999853
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=221.74 Aligned_cols=157 Identities=14% Similarity=0.189 Sum_probs=123.8
Q ss_pred cceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccc
Q 024032 86 GGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS 164 (273)
Q Consensus 86 ~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en 164 (273)
.+|+||||++++||.+||||+||||||||+|+|+|.++ ++|+|.++|+-..-+.-..| +...+|.+||
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~G-----------f~pelTGreN 109 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAG-----------FDPELTGREN 109 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccC-----------CCcccchHHH
Confidence 45999999999999999999999999999999999999 99999999974321111111 1233478887
Q ss_pred -------ccCCHHHHHHHHHHhc-------------ccCCHHHHHHHHh----cCCCCEEEEcCcCCCCCHH------HH
Q 024032 165 -------RGFNYNRVHEGLEELS-------------SWMSEGVHHNQRC----LRSDDCALMKNDAEIDDLK------SS 214 (273)
Q Consensus 165 -------~~~~~~~~~~~l~~~~-------------~~LSgGqkq~~r~----l~~p~iLlLDEPts~LD~~------~~ 214 (273)
.++..+++++..+.+. .++|-||+-|... ..+|+|||+||-.+.-|+. +.
T Consensus 110 i~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~r 189 (249)
T COG1134 110 IYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLER 189 (249)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHH
Confidence 3455555555444332 7899999766532 5799999999999999999 44
Q ss_pred HHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 215 PKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 215 l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
+.++.++ +.|||+| ++||++++|++|++...|+++++..
T Consensus 190 l~e~~~~-~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 190 LNELVEK-NKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HHHHHHc-CCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 6666555 7888888 6799999999999999999999864
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=215.32 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=101.7
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~ 166 (273)
+|+++||++++|++++|+||||||||||||++.+ ++|++.+++......+..+++++|. ..+ +..+
T Consensus 10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---~~G~v~~~~~~~~~~~~~~~~~~q~-~~l----------~~~~ 75 (176)
T cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---ASGKARLISFLPKFSRNKLIFIDQL-QFL----------IDVG 75 (176)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---cCCcEEECCcccccccccEEEEhHH-HHH----------HHcC
Confidence 4999999999999999999999999999999854 6899999877322233446776651 111 1111
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCC--CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-----
Q 024032 167 FNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRS--DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS----- 229 (273)
Q Consensus 167 ~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~--p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv----- 229 (273)
+... .++.-..+||+|||||. ++ +.+ |+++||||||++||+. +.++++.+ .|.|||++
T Consensus 76 L~~~----~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~~ 150 (176)
T cd03238 76 LGYL----TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEHNLD 150 (176)
T ss_pred CCcc----ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH
Confidence 1100 01222367999999986 33 788 9999999999999999 33455544 48999999
Q ss_pred --eeCCEEEEEeCCeEeee
Q 024032 230 --NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 230 --~~ad~i~vl~~G~i~~~ 246 (273)
..||++++|++|.....
T Consensus 151 ~~~~~d~i~~l~~g~~~~~ 169 (176)
T cd03238 151 VLSSADWIIDFGPGSGKSG 169 (176)
T ss_pred HHHhCCEEEEECCCCCCCC
Confidence 45899999977655433
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-29 Score=270.31 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=124.6
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~ 166 (273)
|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.+. +.++|++|++.+ +..|++||..
T Consensus 676 L~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--------~~i~yv~Q~~~l-----~~~Tv~enI~ 742 (1560)
T PTZ00243 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--------RSIAYVPQQAWI-----MNATVRGNIL 742 (1560)
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--------CeEEEEeCCCcc-----CCCcHHHHHH
Confidence 999999999999999999999999999999999999 99999863 468999999874 3569999953
Q ss_pred C----CHHHHHHHHH---------Hh-----------cccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--H-HH
Q 024032 167 F----NYNRVHEGLE---------EL-----------SSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--S-SP 215 (273)
Q Consensus 167 ~----~~~~~~~~l~---------~~-----------~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~-~l 215 (273)
+ +.+.+.++++ .+ +..||||||||. |+ +.+|+++||||||++||+. + .+
T Consensus 743 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~ 822 (1560)
T PTZ00243 743 FFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVV 822 (1560)
T ss_pred cCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHH
Confidence 3 2222222222 22 167999999987 44 7999999999999999997 2 22
Q ss_pred HHH--HhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 216 KYV--LRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 216 ~~l--~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+.+ ....|+|+|++ ..||+|++|++|++++.|+++++++.+.
T Consensus 823 ~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~~~ 873 (1560)
T PTZ00243 823 EECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRTSL 873 (1560)
T ss_pred HHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhChH
Confidence 221 11127899888 4589999999999999999999876543
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-30 Score=219.18 Aligned_cols=189 Identities=19% Similarity=0.189 Sum_probs=151.2
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----CCc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----SSH 140 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~~~ 140 (273)
++++++|..+-+ |-.+|.++..||++-+|||||||||||+..++|+++-+|+|.++|.++.. +.+
T Consensus 3 l~qln~v~~~tR----------L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLAr 72 (248)
T COG4138 3 LMQLNDVAESTR----------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELAR 72 (248)
T ss_pred eeeecccccccc----------ccccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHH
Confidence 466777766421 78889999999999999999999999999999999999999999999853 556
Q ss_pred cEEEEeccchhhhccCCcccccccccC--CHHH----HHHHHHHhc---------ccCCHHHHHHHHh----c-----CC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGF--NYNR----VHEGLEELS---------SWMSEGVHHNQRC----L-----RS 196 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~--~~~~----~~~~l~~~~---------~~LSgGqkq~~r~----l-----~~ 196 (273)
+.+|..|+... .|.+.|+.+..+ +... +.++...++ ++|||||-||+|+ + .|
T Consensus 73 hRAYLsQqq~p----~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~N 148 (248)
T COG4138 73 HRAYLSQQQTP----PFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDAN 148 (248)
T ss_pred HHHHHhhccCC----cchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCC
Confidence 66788777654 455677766322 2222 233333332 7899999998865 1 24
Q ss_pred C--CEEEEcCcCCCCCHHH------HHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHH
Q 024032 197 D--DCALMKNDAEIDDLKS------SPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRK 260 (273)
Q Consensus 197 p--~iLlLDEPts~LD~~~------~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~ 260 (273)
| ++||+|||.++||..+ ++.+++++ |.+|||+ ++||++++++.|++...|..+|+++.+-+..
T Consensus 149 P~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~-G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~~vL~q 227 (248)
T COG4138 149 PAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ-GLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQ 227 (248)
T ss_pred ccceeEEecCCCcchhHHHHHHHHHHHHHHHhC-CcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcChHHHHH
Confidence 4 6999999999999993 35677877 9999999 6789999999999999999999999999999
Q ss_pred HhCCceEEE
Q 024032 261 CSKISFCIL 269 (273)
Q Consensus 261 ~~~~~~~~~ 269 (273)
+|+..+...
T Consensus 228 ~fg~~frr~ 236 (248)
T COG4138 228 AYGMNFRRL 236 (248)
T ss_pred HhccceEEE
Confidence 999987654
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-29 Score=271.34 Aligned_cols=162 Identities=14% Similarity=0.084 Sum_probs=131.2
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc----c-CccEEEECCeeCCC----CCccEEEEeccchhhhccCC
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL----S-RSGLVLFAQTSSGN----SSHTITMYMEEHNVMRSLQS 157 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~----~-~~G~I~i~g~~i~~----~~~~i~~v~q~~~~~~~~~~ 157 (273)
+|+|+|+++++||+++|+||||||||||||+|+|+. . .+|+|.++|+++.+ .++.+++++|+..+ +.
T Consensus 76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~----~~ 151 (1394)
T TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVH----FP 151 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEecccccc----CC
Confidence 399999999999999999999999999999999985 4 79999999998742 45569999998775 44
Q ss_pred ccccccccc--------------CCHHH-----HHHHHHHhc--------------ccCCHHHHHHHH---h-cCCCCEE
Q 024032 158 GFCVYDSRG--------------FNYNR-----VHEGLEELS--------------SWMSEGVHHNQR---C-LRSDDCA 200 (273)
Q Consensus 158 ~~tv~en~~--------------~~~~~-----~~~~l~~~~--------------~~LSgGqkq~~r---~-l~~p~iL 200 (273)
.+||+|+.. ...++ ++++++.++ ..||||||||.. + +.+|+++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 558988732 11221 233566555 249999999872 2 7999999
Q ss_pred EEcCcCCCCCHH------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeCCeEeeecChhhh
Q 024032 201 LMKNDAEIDDLK------SSPKYVLRRVDFAMVVS---------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 201 lLDEPts~LD~~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
+|||||+|||+. +.+++++++.|.|||++ +++|++++|++|+++..|+++++
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 999999999999 44666765558898888 45799999999999999999876
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-29 Score=210.77 Aligned_cols=186 Identities=18% Similarity=0.203 Sum_probs=142.8
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee---CC---
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS---SG--- 136 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~---i~--- 136 (273)
..++++.++++.|..+ . ..++|||++.|||++||||.||||||||+++|++-+. +.|+|.+.-.+ ..
T Consensus 4 ~PLL~V~~lsk~Yg~~--~----gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ 77 (258)
T COG4107 4 KPLLSVSGLSKLYGPG--K----GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYT 77 (258)
T ss_pred CcceeehhhhhhhCCC--c----CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhh
Confidence 3478999999999543 2 3899999999999999999999999999999999888 99999885432 11
Q ss_pred --C------CCccEEEEeccchhhhccCCccccccccc------------CCHHHHHHHHHHhc----------ccCCHH
Q 024032 137 --N------SSHTITMYMEEHNVMRSLQSGFCVYDSRG------------FNYNRVHEGLEELS----------SWMSEG 186 (273)
Q Consensus 137 --~------~~~~i~~v~q~~~~~~~~~~~~tv~en~~------------~~~~~~~~~l~~~~----------~~LSgG 186 (273)
+ .|-.-|+|.|+|..--. ...+.--|.+ .-.++..++++++. ..+|||
T Consensus 78 msEaeRR~L~RTeWG~VhQnP~DGLR--m~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGG 155 (258)
T COG4107 78 MSEAERRRLLRTEWGFVHQNPRDGLR--MQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGG 155 (258)
T ss_pred hchHHHHHHhhhccceeecCccccce--eeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchH
Confidence 1 23346888888764211 1112222321 12344556666665 789999
Q ss_pred HHHHHHh----cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecC
Q 024032 187 VHHNQRC----LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 187 qkq~~r~----l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~ 248 (273)
|+||..+ ...|+++++||||.|||.. .+++.+.++.|.+++|+ -+++|.+||++|++++.|-
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GL 235 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGL 235 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccc
Confidence 9998633 7899999999999999998 44677778889999888 3479999999999999999
Q ss_pred hhhhccChh
Q 024032 249 TKRLFSAPG 257 (273)
Q Consensus 249 ~~~l~~~~~ 257 (273)
++.++.+|.
T Consensus 236 TDrvLDDP~ 244 (258)
T COG4107 236 TDRVLDDPH 244 (258)
T ss_pred ccccccCCC
Confidence 999987764
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=271.50 Aligned_cols=163 Identities=15% Similarity=0.144 Sum_probs=132.4
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C---ccEEEECCeeCCC--CCccEEEEeccchhhhccCCccc
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGN--SSHTITMYMEEHNVMRSLQSGFC 160 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~---~G~I~i~g~~i~~--~~~~i~~v~q~~~~~~~~~~~~t 160 (273)
+|+|+|+.|++|++++|+||||||||||||+|+|+++ + +|+|.++|+++.+ .++.++|++|+..+ +..+|
T Consensus 180 IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~----~~~lT 255 (1470)
T PLN03140 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVH----VGVMT 255 (1470)
T ss_pred eccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccC----CCcCc
Confidence 5999999999999999999999999999999999987 6 9999999998764 35679999998775 44558
Q ss_pred ccccccCC-----------------HH----------------------------HHHHHHHHhc--------------c
Q 024032 161 VYDSRGFN-----------------YN----------------------------RVHEGLEELS--------------S 181 (273)
Q Consensus 161 v~en~~~~-----------------~~----------------------------~~~~~l~~~~--------------~ 181 (273)
|+||..+. .+ .+++.++.++ .
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 88873210 00 0233555554 3
Q ss_pred cCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeCCe
Q 024032 182 WMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS---------NIAEIYKALKAGD 242 (273)
Q Consensus 182 ~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~G~ 242 (273)
.||||||||+ ++ +.+|++++|||||+|||+. +.+++++++.|.|+|++ +++|+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 6999999987 22 7899999999999999999 34566665458899998 4579999999999
Q ss_pred EeeecChhhhc
Q 024032 243 SKPLDATKRLF 253 (273)
Q Consensus 243 i~~~g~~~~l~ 253 (273)
++..|+++++.
T Consensus 416 ivy~G~~~~~~ 426 (1470)
T PLN03140 416 IVYQGPRDHIL 426 (1470)
T ss_pred EEEeCCHHHHH
Confidence 99999988874
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-29 Score=246.10 Aligned_cols=162 Identities=15% Similarity=0.068 Sum_probs=124.5
Q ss_pred EEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEE-----------ECCeeCCC-
Q 024032 71 HKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL-----------FAQTSSGN- 137 (273)
Q Consensus 71 ~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~-----------i~g~~i~~- 137 (273)
+++++|.. +..+ |++++ .+++|+++||+||||||||||+|+|+|+++ ++|+|. ++|+++..
T Consensus 78 ~~~~~yg~-~~~~----L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~ 151 (590)
T PRK13409 78 EPVHRYGV-NGFK----LYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNY 151 (590)
T ss_pred CceEEecC-Ccee----EecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHH
Confidence 47788842 2345 99999 899999999999999999999999999999 999997 88987642
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccCC--HHHHHHHHHHhc---------ccCCHHHHHHHH---h-cCC
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGFN--YNRVHEGLEELS---------SWMSEGVHHNQR---C-LRS 196 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~--~~~~~~~l~~~~---------~~LSgGqkq~~r---~-l~~ 196 (273)
...++++.+|....++. .+..||.++.... .+.+.++++.++ .+|||||+||.. + +++
T Consensus 152 ~~~~~~~~~~~~~~~q~~~~~p~-~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~ 230 (590)
T PRK13409 152 FKKLYNGEIKVVHKPQYVDLIPK-VFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRD 230 (590)
T ss_pred HHHHhccCcceeecccchhhhhh-hhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 12345666776555443 2344888874322 345666777665 689999999872 2 789
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCC
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAG 241 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G 241 (273)
|++|||||||++||+. +.++++.+ |.|||++ .+||++++|+++
T Consensus 231 p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 231 ADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999 33455543 8999998 558999999873
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=200.58 Aligned_cols=168 Identities=18% Similarity=0.203 Sum_probs=130.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc----CccEEEECCeeCCC---C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS----RSGLVLFAQTSSGN---S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~----~~G~I~i~g~~i~~---~ 138 (273)
.+.++||+... ++... |-++||+|.+||++.|+||||||||||+.-+.|.+. .+|+++++++++.. .
T Consensus 2 ~l~l~nvsl~l--~g~cL----La~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~ 75 (213)
T COG4136 2 MLCLKNVSLRL--PGSCL----LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA 75 (213)
T ss_pred ceeeeeeeecC--CCceE----EEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh
Confidence 45688888655 45666 999999999999999999999999999999999876 48999999999864 5
Q ss_pred CccEEEEeccchhhhccCCcccccccccC----------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF----------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~----------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~ 195 (273)
++++|+.||++.+||++ +|.+|..+ .+..+..++++.+ .+||||||-|+ |+ +.
T Consensus 76 qRq~GiLFQD~lLFphl----sVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla 151 (213)
T COG4136 76 QRQIGILFQDALLFPHL----SVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLA 151 (213)
T ss_pred hhheeeeeccccccccc----ccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHh
Confidence 68899999999987765 89998322 2344566777776 78999998775 44 78
Q ss_pred CCCEEEEcCcCCCCCHH--HHHHH-----HHhcCCcEEEEcee--CCEEEEEeCCeEeeec
Q 024032 196 SDDCALMKNDAEIDDLK--SSPKY-----VLRRVDFAMVVSNI--AEIYKALKAGDSKPLD 247 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~--~~l~~-----l~~~~g~tiiiv~~--ad~i~vl~~G~i~~~g 247 (273)
+|+.++||||+|.||.. ++.++ ++. .|+.+++|.| .|. =.++++++.+
T Consensus 152 ~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~-agiPtv~VTHD~~Dv---pagsrVie~~ 208 (213)
T COG4136 152 QPKALLLDEPFSRLDVALRDQFRQWVFSEVRA-AGIPTVQVTHDLQDV---PAGSRVIEMA 208 (213)
T ss_pred CcceeeeCCchhHHHHHHHHHHHHHHHHHHHh-cCCCeEEEecccccC---CCCCeeeeee
Confidence 99999999999999998 44433 333 3887777733 331 1456666544
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-28 Score=198.95 Aligned_cols=114 Identities=23% Similarity=0.382 Sum_probs=97.5
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCV 161 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv 161 (273)
|+++||+|++|++++|+||||||||||+++|+|+++ ++|.|.++|.++.. .++.+++++|+..+++ ..|+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~tv 76 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFP----GLTV 76 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHT----TSBH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccc----cccc
Confidence 789999999999999999999999999999999999 99999999999875 5678999999977644 3478
Q ss_pred cccccCCHHHHHHHHHHhc-------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCC
Q 024032 162 YDSRGFNYNRVHEGLEELS-------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAE 207 (273)
Q Consensus 162 ~en~~~~~~~~~~~l~~~~-------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts 207 (273)
.+| ...+++.++++.++ ..||+|||||. ++ +++|++|||||||+
T Consensus 77 ~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 77 REN--ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHH--HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccc--cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 887 33445666666665 67999999987 33 79999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-28 Score=236.68 Aligned_cols=171 Identities=24% Similarity=0.251 Sum_probs=130.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
+|.+++++++| +++++ |+++||++.+|+.+||||+||||||||||+|+|... ++|+|...+. .++++
T Consensus 3 ~i~~~~ls~~~--g~~~l----~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~------~~v~~ 70 (530)
T COG0488 3 MITLENLSLAY--GDRPL----LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG------LRVGY 70 (530)
T ss_pred eEEEeeeEEee--CCcee----ecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC------ceEEE
Confidence 68899999999 67788 999999999999999999999999999999999998 9999988653 25899
Q ss_pred EeccchhhhccCCcccccccccCC-----------------------------------------HHHHHHHHHHhc---
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGFN-----------------------------------------YNRVHEGLEELS--- 180 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~~-----------------------------------------~~~~~~~l~~~~--- 180 (273)
+.|++... ...||.+..-.. +.++..++..++
T Consensus 71 l~Q~~~~~----~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~ 146 (530)
T COG0488 71 LSQEPPLD----PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD 146 (530)
T ss_pred eCCCCCcC----CCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCc
Confidence 99998853 333666541100 112223333332
Q ss_pred -----ccCCHHHHHHHH---h-cCCCCEEEEcCcCCCCCHHH--HHHH-HHhcCCcEEEEc--------eeCCEEEEEeC
Q 024032 181 -----SWMSEGVHHNQR---C-LRSDDCALMKNDAEIDDLKS--SPKY-VLRRVDFAMVVS--------NIAEIYKALKA 240 (273)
Q Consensus 181 -----~~LSgGqkq~~r---~-l~~p~iLlLDEPts~LD~~~--~l~~-l~~~~g~tiiiv--------~~ad~i~vl~~ 240 (273)
.+||||||.|+. + +.+|++|||||||++||... -+.. |.+-.| |+|+| +.|++|+-++.
T Consensus 147 ~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~~ld~ 225 (530)
T COG0488 147 EDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHILELDR 225 (530)
T ss_pred ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheEEecC
Confidence 679999998762 2 78999999999999999993 3444 434336 88888 56899999999
Q ss_pred CeEee-ecChhhhc
Q 024032 241 GDSKP-LDATKRLF 253 (273)
Q Consensus 241 G~i~~-~g~~~~l~ 253 (273)
|++.. .|.-....
T Consensus 226 g~l~~y~Gny~~~~ 239 (530)
T COG0488 226 GKLTPYKGNYSSYL 239 (530)
T ss_pred CceeEecCCHHHHH
Confidence 98865 45544443
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-28 Score=242.59 Aligned_cols=179 Identities=13% Similarity=0.065 Sum_probs=123.0
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc----cCccEEEECCeeCCC---
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL----SRSGLVLFAQTSSGN--- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~----~~~G~I~i~g~~i~~--- 137 (273)
.+|+++|++++|. ++.+ |+++||+|++|+++||||||||||||||++|+|.. +++|+|.+.++.+..
T Consensus 176 ~~I~i~nls~~y~--~~~l----l~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~ 249 (718)
T PLN03073 176 KDIHMENFSISVG--GRDL----IVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDT 249 (718)
T ss_pred eeEEEceEEEEeC--CCEE----EECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCC
Confidence 4699999999994 4567 99999999999999999999999999999999963 378999765543210
Q ss_pred ----------------CCccEEEEeccchhhhccCCcccc----cccccCC-----------------------HHHHHH
Q 024032 138 ----------------SSHTITMYMEEHNVMRSLQSGFCV----YDSRGFN-----------------------YNRVHE 174 (273)
Q Consensus 138 ----------------~~~~i~~v~q~~~~~~~~~~~~tv----~en~~~~-----------------------~~~~~~ 174 (273)
.+..+++++|++.+.. ...++ .++.+.+ ..++.+
T Consensus 250 t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~---~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~ 326 (718)
T PLN03073 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEF---ETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAAS 326 (718)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh---cccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 0112344444432210 00000 0011111 122333
Q ss_pred HHHHhc----------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEc--------e
Q 024032 175 GLEELS----------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVS--------N 230 (273)
Q Consensus 175 ~l~~~~----------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv--------~ 230 (273)
++..++ .+||||||||. ++ +.+|++|||||||++||+. ..+..+.++.+.|||+| .
T Consensus 327 ~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~ 406 (718)
T PLN03073 327 ILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNT 406 (718)
T ss_pred HHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 443333 57999999987 33 7899999999999999999 33444334457899888 5
Q ss_pred eCCEEEEEeCCeEe-eecChhhh
Q 024032 231 IAEIYKALKAGDSK-PLDATKRL 252 (273)
Q Consensus 231 ~ad~i~vl~~G~i~-~~g~~~~l 252 (273)
.||++++|++|++. ..|+..++
T Consensus 407 ~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 407 VVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred hCCEEEEEECCEEEEeCCCHHHH
Confidence 58999999999996 56665543
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=231.00 Aligned_cols=175 Identities=16% Similarity=0.192 Sum_probs=138.4
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccE
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i 142 (273)
...++++|++++|..+ +.+ ++++||.|.+|+.+|||||||+|||||||+|+|... .+|.|.+... -++
T Consensus 319 ~~vl~~~~~~~~y~~~-~~l----~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~------v~i 387 (530)
T COG0488 319 KLVLEFENVSKGYDGG-RLL----LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET------VKI 387 (530)
T ss_pred CeeEEEeccccccCCC-cee----ecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc------eEE
Confidence 3478999999999643 667 999999999999999999999999999999999988 9999987533 358
Q ss_pred EEEeccchhhhccCCcccccccc-----cCCHHHHHHHHHHhc----------ccCCHHHHHHHHh----cCCCCEEEEc
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSR-----GFNYNRVHEGLEELS----------SWMSEGVHHNQRC----LRSDDCALMK 203 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~-----~~~~~~~~~~l~~~~----------~~LSgGqkq~~r~----l~~p~iLlLD 203 (273)
+|+.|+...+ ....|+.|+. ......++..+..++ ..||||||.|..+ +.+|.+||||
T Consensus 388 gyf~Q~~~~l---~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLD 464 (530)
T COG0488 388 GYFDQHRDEL---DPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLD 464 (530)
T ss_pred EEEEehhhhc---CccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEc
Confidence 9999987542 2333666652 223567888888887 6799999887632 7899999999
Q ss_pred CcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee-cChhhhc
Q 024032 204 NDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL-DATKRLF 253 (273)
Q Consensus 204 EPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~-g~~~~l~ 253 (273)
|||+.||.. +.+......+.-|||+| +.|++++.+++ ++... |..++..
T Consensus 465 EPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 465 EPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred CCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 999999999 55666556667788887 66899999998 66554 6655543
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=245.27 Aligned_cols=179 Identities=13% Similarity=0.147 Sum_probs=148.4
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
..+.++++++.|...+. + ++++||.|++||+.|++|||||||||++|+|.|..+ ++|++++.|.++..
T Consensus 563 ~~~~~~~L~k~y~~~~~-A----v~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~ 637 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-A----VRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQ 637 (885)
T ss_pred ceEEEcceeeeecchhh-h----hcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhh
Confidence 46789999999965432 4 999999999999999999999999999999999999 99999999998864
Q ss_pred CCccEEEEeccchhhhccCCccccccc-------ccCCHHH----HHHHHHHhc---------ccCCHHHHHHH----Hh
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDS-------RGFNYNR----VHEGLEELS---------SWMSEGVHHNQ----RC 193 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en-------~~~~~~~----~~~~l~~~~---------~~LSgGqkq~~----r~ 193 (273)
.++.+||.+|...+++. +|.+|+ .++.... ++..++.++ ..+|||+|+|. ++
T Consensus 638 ~~~~iGyCPQ~d~l~~~----lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aial 713 (885)
T KOG0059|consen 638 VRKQLGYCPQFDALWEE----LTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIAL 713 (885)
T ss_pred hhhhcccCCchhhhhhh----ccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHH
Confidence 56779999999887554 488886 3444333 444555555 78999999876 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
+.+|++++|||||+|+||. +.+.++++. |+++|++ .+|||+.+|.+|++...|+++++.
T Consensus 714 ig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~-g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 714 IGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN-GKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHH
Confidence 7899999999999999999 446677664 6688888 568999999999999999999874
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-27 Score=197.52 Aligned_cols=135 Identities=14% Similarity=0.225 Sum_probs=108.2
Q ss_pred EEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCc----cE
Q 024032 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSH----TI 142 (273)
Q Consensus 68 ~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~----~i 142 (273)
+.++++ +..+.+++ +.++||++.+||++-|.||||||||||||+|+|+.+ ++|+|+++|.++...+. ..
T Consensus 4 ~a~~L~--~~R~e~~l----f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l 77 (209)
T COG4133 4 EAENLS--CERGERTL----FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQAL 77 (209)
T ss_pred hhhhhh--hccCccee----ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHH
Confidence 344444 34566777 999999999999999999999999999999999999 99999999998875443 22
Q ss_pred EEEeccchhhhccCCcccccccccC--------CHHHHHHHHHHhc---------ccCCHHHHHHHH---h-cCCCCEEE
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF--------NYNRVHEGLEELS---------SWMSEGVHHNQR---C-LRSDDCAL 201 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~--------~~~~~~~~l~~~~---------~~LSgGqkq~~r---~-l~~p~iLl 201 (273)
-|.-.++. +...+|++||..| +.+.+.++++.++ .+||-|||+|+. + ++.+++.|
T Consensus 78 ~yLGH~~g----iK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWi 153 (209)
T COG4133 78 LYLGHQPG----IKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWI 153 (209)
T ss_pred HHhhcccc----ccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCcee
Confidence 22222232 3566799999432 4567889999988 789999988763 3 78999999
Q ss_pred EcCcCCCCCHH
Q 024032 202 MKNDAEIDDLK 212 (273)
Q Consensus 202 LDEPts~LD~~ 212 (273)
||||+++||..
T Consensus 154 LDEP~taLDk~ 164 (209)
T COG4133 154 LDEPFTALDKE 164 (209)
T ss_pred ecCcccccCHH
Confidence 99999999999
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-26 Score=203.43 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=96.1
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHH-HHHhhCccCccEEEECC-------ee-----CCC---C-CccEEEEeccc
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLV-NLMYSVLSRSGLVLFAQ-------TS-----SGN---S-SHTITMYMEEH 149 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl-~ll~gl~~~~G~I~i~g-------~~-----i~~---~-~~~i~~v~q~~ 149 (273)
+|+++||+|++||++||+||||||||||+ ..|.. +|.+.+.. .. ..+ . .....+.++++
T Consensus 10 ~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (226)
T cd03270 10 NLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQK 85 (226)
T ss_pred ccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH----HHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCC
Confidence 49999999999999999999999999995 44431 22221100 00 000 1 11223344443
Q ss_pred hhhhccCCccccc---cc----c----cCCHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCC--CEEEE
Q 024032 150 NVMRSLQSGFCVY---DS----R----GFNYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSD--DCALM 202 (273)
Q Consensus 150 ~~~~~~~~~~tv~---en----~----~~~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p--~iLlL 202 (273)
.... ....++. +. . ........+.++.++ .+|||||+||. ++ +.+| ++|||
T Consensus 86 ~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llll 163 (226)
T cd03270 86 TTSR--NPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVL 163 (226)
T ss_pred CCCC--CCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 2110 1111111 10 0 001111234454443 67999999987 33 5676 69999
Q ss_pred cCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE------eCCeEeeec
Q 024032 203 KNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL------KAGDSKPLD 247 (273)
Q Consensus 203 DEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl------~~G~i~~~g 247 (273)
||||++||+. +.+++++++ |.|+|++ .+||++++| ++|+|+++|
T Consensus 164 DEPt~gLD~~~~~~l~~~l~~~~~~-g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 164 DEPSIGLHPRDNDRLIETLKRLRDL-GNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 9999999998 335555544 8999999 568999999 999999875
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-26 Score=192.30 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=123.2
Q ss_pred ceEEEEEEEEeecCCe-eeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee----CC---
Q 024032 66 LNELRHKFLSYRSGDF-WIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS----SG--- 136 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~-~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~----i~--- 136 (273)
.+.++|++++|.-..+ -+...+|+++||+++.||++++=||||||||||||+|.+-|. ++|+|++.-.. +-
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 5788999998854211 111234999999999999999999999999999999999999 99999985432 11
Q ss_pred -----C-CCccEEEEeccchhhhccCCccc-cccc---ccCCHH----HHHHHHHHhc----------ccCCHHHHHHHH
Q 024032 137 -----N-SSHTITMYMEEHNVMRSLQSGFC-VYDS---RGFNYN----RVHEGLEELS----------SWMSEGVHHNQR 192 (273)
Q Consensus 137 -----~-~~~~i~~v~q~~~~~~~~~~~~t-v~en---~~~~~~----~~~~~l~~~~----------~~LSgGqkq~~r 192 (273)
+ .++.+|||.|-....|+. ..+. |.|- .+.+.+ ++...+.+++ .++|||||||..
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV-~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVN 162 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRV-SALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVN 162 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCc-chHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehh
Confidence 1 346688888866655442 1111 2221 233433 3444455554 789999999873
Q ss_pred ---h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC
Q 024032 193 ---C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKA 240 (273)
Q Consensus 193 ---~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~ 240 (273)
. +.+=+||+|||||++||.. +++.+-..+ |.+++=| ..|||++-|..
T Consensus 163 IaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~-GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 163 IARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKAR-GAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhc-CceEEEeeccHHHHHHHhhheeeccc
Confidence 2 6788999999999999998 445554444 8888777 56788887743
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-25 Score=207.31 Aligned_cols=195 Identities=15% Similarity=0.161 Sum_probs=147.2
Q ss_pred hhhhhhHHHHHHHhchhh-hc-----cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHH
Q 024032 41 NVSTLTPRLRVLREMERL-AL-----IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSL 114 (273)
Q Consensus 41 ~~~~~~~r~~~~~~~~~~-~~-----~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTL 114 (273)
.+..+.+++.++..-++. .. .+.-+.+|++||.|.|.... -- +..||++|++||++-|+|.||||||||
T Consensus 291 ~AqvA~~kiakle~~~~~a~~~~~q~~p~~~~lelrnvrfay~~~~-Fh----vgPiNl~ikrGelvFliG~NGsGKST~ 365 (546)
T COG4615 291 TAQVAFNKIAKLELAPYKADFPRPQAFPDWKTLELRNVRFAYQDNA-FH----VGPINLTIKRGELVFLIGGNGSGKSTL 365 (546)
T ss_pred HHHHHHHHHHHhhcCCccccCCCCCcCCcccceeeeeeeeccCccc-ce----ecceeeEEecCcEEEEECCCCCcHHHH
Confidence 455666666666432211 11 11124799999999997643 22 899999999999999999999999999
Q ss_pred HHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhc--------
Q 024032 115 VNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELS-------- 180 (273)
Q Consensus 115 l~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~-------- 180 (273)
++++.|+++ ++|+|++||+++.. .|+-++.+|.|..+|+.+. -.|+. .+.+.+...++++.
T Consensus 366 ~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~-as~q~i~~~LqrLel~~ktsl~ 440 (546)
T COG4615 366 AMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGK-ASPQLIEKWLQRLELAHKTSLN 440 (546)
T ss_pred HHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccC-CChHHHHHHHHHHHHhhhhccc
Confidence 999999999 99999999999863 5566677888888765432 12222 35566666666654
Q ss_pred ------ccCCHHHHHHHHh----cCCCCEEEEcCcCCCCCHH-------HHHHHHHhcCCcEEEEc-------eeCCEEE
Q 024032 181 ------SWMSEGVHHNQRC----LRSDDCALMKNDAEIDDLK-------SSPKYVLRRVDFAMVVS-------NIAEIYK 236 (273)
Q Consensus 181 ------~~LSgGqkq~~r~----l~~p~iLlLDEPts~LD~~-------~~l~~l~~~~g~tiiiv-------~~ad~i~ 236 (273)
..||-|||+|.+. +-+-+|+++||=.+.-||. ..+-.+.++ |+||+.| .+|||++
T Consensus 441 d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~q-GKTI~aIsHDd~YF~~ADrll 519 (546)
T COG4615 441 DGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQ-GKTIFAISHDDHYFIHADRLL 519 (546)
T ss_pred CCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHh-CCeEEEEecCchhhhhHHHHH
Confidence 5699999998743 6789999999999999999 233445544 9999999 4578999
Q ss_pred EEeCCeEeee
Q 024032 237 ALKAGDSKPL 246 (273)
Q Consensus 237 vl~~G~i~~~ 246 (273)
.|++|++++.
T Consensus 520 ~~~~G~~~e~ 529 (546)
T COG4615 520 EMRNGQLSEL 529 (546)
T ss_pred HHhcCceeec
Confidence 9999999875
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-24 Score=186.96 Aligned_cols=139 Identities=19% Similarity=0.235 Sum_probs=101.9
Q ss_pred e-eeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C---------ccEEEECCeeCCC--CCccEEEEeccchhhhc
Q 024032 88 I-QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---------SGLVLFAQTSSGN--SSHTITMYMEEHNVMRS 154 (273)
Q Consensus 88 L-~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~---------~G~I~i~g~~i~~--~~~~i~~v~q~~~~~~~ 154 (273)
+ ++++|++++| +++|+||||||||||+++|+|++. . .|++.+.|++... .++++++++|++..+
T Consensus 12 ~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~-- 88 (197)
T cd03278 12 FADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR-- 88 (197)
T ss_pred cCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc--
Confidence 6 7789999999 999999999999999999999875 3 3467777776532 346799999998753
Q ss_pred cCCcccccccccCCHHHHHHHHHHhc------ccCCHHHHHHH---Hhc-----CCCCEEEEcCcCCCCCHH------HH
Q 024032 155 LQSGFCVYDSRGFNYNRVHEGLEELS------SWMSEGVHHNQ---RCL-----RSDDCALMKNDAEIDDLK------SS 214 (273)
Q Consensus 155 ~~~~~tv~en~~~~~~~~~~~l~~~~------~~LSgGqkq~~---r~l-----~~p~iLlLDEPts~LD~~------~~ 214 (273)
+ ... ..+++.++++... ..||+|||||. +++ .+|+++||||||++||+. +.
T Consensus 89 --~--~~~-----~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~ 159 (197)
T cd03278 89 --Y--SII-----SQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARL 159 (197)
T ss_pred --e--eEE-----ehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 1 111 1234444444421 78999999986 222 467999999999999999 23
Q ss_pred HHHHHhcCCcEEEEc-------eeCCEEEEEeC
Q 024032 215 PKYVLRRVDFAMVVS-------NIAEIYKALKA 240 (273)
Q Consensus 215 l~~l~~~~g~tiiiv-------~~ad~i~vl~~ 240 (273)
++++.+ +.|||++ ..||+++.|..
T Consensus 160 l~~~~~--~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 160 LKEFSK--ETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred HHHhcc--CCEEEEEECCHHHHhhcceEEEEEe
Confidence 444433 6788888 55788888753
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-23 Score=187.88 Aligned_cols=161 Identities=18% Similarity=0.206 Sum_probs=105.9
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHh-----hCc-----------------cCccEEEECCeeCCC-CCcc---
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMY-----SVL-----------------SRSGLVLFAQTSSGN-SSHT--- 141 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~-----gl~-----------------~~~G~I~i~g~~i~~-~~~~--- 141 (273)
|++++++|+.|.+++|.|+||||||||++.+. ..+ ...--|.+++.++.. .|..
T Consensus 11 l~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~t 90 (261)
T cd03271 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPAT 90 (261)
T ss_pred CCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHHH
Confidence 99999999999999999999999999998652 110 011135666666642 1111
Q ss_pred EEEEeccchh---------------h--------hccCCcccccccccC-----CHHHHHHHHHHhc----------ccC
Q 024032 142 ITMYMEEHNV---------------M--------RSLQSGFCVYDSRGF-----NYNRVHEGLEELS----------SWM 183 (273)
Q Consensus 142 i~~v~q~~~~---------------~--------~~~~~~~tv~en~~~-----~~~~~~~~l~~~~----------~~L 183 (273)
...++++... . ......+|+.|+..+ ...++.+.++.++ .+|
T Consensus 91 y~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~~L 170 (261)
T cd03271 91 YTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTL 170 (261)
T ss_pred HHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccccC
Confidence 1112221000 0 000123455555321 1123444555554 679
Q ss_pred CHHHHHHHH---h-cCC---CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE-----
Q 024032 184 SEGVHHNQR---C-LRS---DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL----- 238 (273)
Q Consensus 184 SgGqkq~~r---~-l~~---p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl----- 238 (273)
||||+||.. + +.+ |+++||||||+|||+. +.++++.++ |.|||++ ..||++++|
T Consensus 171 SgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvIiitH~~~~i~~aD~ii~Lgp~~g 249 (261)
T cd03271 171 SGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIEHNLDVIKCADWIIDLGPEGG 249 (261)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHhCCEEEEecCCcC
Confidence 999999873 3 443 7999999999999999 335556544 8999999 458999999
Q ss_pred -eCCeEeeecCh
Q 024032 239 -KAGDSKPLDAT 249 (273)
Q Consensus 239 -~~G~i~~~g~~ 249 (273)
++|+|++.|++
T Consensus 250 ~~~G~iv~~Gt~ 261 (261)
T cd03271 250 DGGGQVVASGTP 261 (261)
T ss_pred CCCCEEEEeCCC
Confidence 89999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-24 Score=221.61 Aligned_cols=160 Identities=14% Similarity=0.123 Sum_probs=130.7
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc---CccEEEECCeeCC--CCCccEEEEeccchhhhccCCcccc
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSSG--NSSHTITMYMEEHNVMRSLQSGFCV 161 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~---~~G~I~i~g~~i~--~~~~~i~~v~q~~~~~~~~~~~~tv 161 (273)
.|+||+=-++||-.+||+|+|||||||||++|+|-.. .+|+|.++|.+.. ..+|.+||+-|+..+. ...||
T Consensus 806 LL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~----~~~TV 881 (1391)
T KOG0065|consen 806 LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHS----PELTV 881 (1391)
T ss_pred hhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccC----cccch
Confidence 3999999999999999999999999999999999754 6999999999987 3678899999988864 45599
Q ss_pred ccccc----------CCH----HHHHHHHHHhc-------------ccCCHHHHHHHHh----cCCC-CEEEEcCcCCCC
Q 024032 162 YDSRG----------FNY----NRVHEGLEELS-------------SWMSEGVHHNQRC----LRSD-DCALMKNDAEID 209 (273)
Q Consensus 162 ~en~~----------~~~----~~~~~~l~~~~-------------~~LSgGqkq~~r~----l~~p-~iLlLDEPts~L 209 (273)
+|... .+. +-++++++.++ ..||..||+|..+ +.+| .||+||||||||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGL 961 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGL 961 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCc
Confidence 99621 121 33566666655 4599999887633 6899 899999999999
Q ss_pred CHH------HHHHHHHhcCCcEEEEc---------eeCCEEEEEe-CCeEeeecChhh
Q 024032 210 DLK------SSPKYVLRRVDFAMVVS---------NIAEIYKALK-AGDSKPLDATKR 251 (273)
Q Consensus 210 D~~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~-~G~i~~~g~~~~ 251 (273)
|.. +.+++++.. |.||+.+ +..|++++|+ +|+.+..|+..+
T Consensus 962 DsqaA~~i~~~lrkla~t-GqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 962 DSQAAAIVMRFLRKLADT-GQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred cHHHHHHHHHHHHHHHhc-CCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 999 557788875 9999999 4569999985 688999998755
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-23 Score=200.57 Aligned_cols=174 Identities=11% Similarity=0.133 Sum_probs=135.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------C
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------S 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~ 138 (273)
.+++++++..- . ++|+||++++|||+||.|-=|||+|=|+++|.|..+ .+|+|.++|+++.. .
T Consensus 263 ~l~v~~l~~~~------~----~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai 332 (500)
T COG1129 263 VLEVRNLSGGG------K----VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAI 332 (500)
T ss_pred EEEEecCCCCC------c----eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHH
Confidence 56677776531 2 899999999999999999999999999999999888 99999999998753 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC------------CHH----HHHHHHHHhc----------ccCCHHHHHHH-
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF------------NYN----RVHEGLEELS----------SWMSEGVHHNQ- 191 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~------------~~~----~~~~~l~~~~----------~~LSgGqkq~~- 191 (273)
+.-++|++.+... ..++..++|.+|..+ +.. .+.+..+.+. ..||||.||+.
T Consensus 333 ~~Gi~~v~EDRk~-~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVv 411 (500)
T COG1129 333 KAGIAYVPEDRKS-EGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVV 411 (500)
T ss_pred HcCCEeCCccccc-CcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHH
Confidence 3467888776432 223455678887321 111 2233334333 78999999987
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhh
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKR 251 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~ 251 (273)
|. ..+|++|||||||-|+|.. .++++++++ |++||++ .+||||+||++|+++..-+.++
T Consensus 412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 412 LARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 33 7899999999999999998 557788877 9999999 6899999999999998666655
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=197.46 Aligned_cols=150 Identities=16% Similarity=0.224 Sum_probs=120.7
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccE
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i 142 (273)
...+.++|++..-+.+. .. |++.+|+|++|+.+-|.||||||||||+|+|+|+.+ -+|+|.+-. ...+
T Consensus 390 ~~~i~~~nl~l~~p~~~-~l----l~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~------~~~~ 458 (604)
T COG4178 390 DHGITLENLSLRTPDGQ-TL----LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA------DSAL 458 (604)
T ss_pred cceeEEeeeeEECCCCC-ee----eccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC------CCce
Confidence 36799999999887654 66 999999999999999999999999999999999999 999998752 1346
Q ss_pred EEEeccchhhhccCCccccccc-------ccCCHHHHHHHHHHhc---------------ccCCHHHHHHH---Hh-cCC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDS-------RGFNYNRVHEGLEELS---------------SWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en-------~~~~~~~~~~~l~~~~---------------~~LSgGqkq~~---r~-l~~ 196 (273)
-|++|.|.+ +..|.+|- ..++++++.++|.+++ ..||+|||||. |+ +++
T Consensus 459 lflpQ~PY~-----p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~k 533 (604)
T COG4178 459 LFLPQRPYL-----PQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHK 533 (604)
T ss_pred EEecCCCCC-----CCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcC
Confidence 788888873 33366663 1267788888888877 56999999987 44 899
Q ss_pred CCEEEEcCcCCCCCHHH--HHHHHHhc--CCcEEEEc
Q 024032 197 DDCALMKNDAEIDDLKS--SPKYVLRR--VDFAMVVS 229 (273)
Q Consensus 197 p~iLlLDEPts~LD~~~--~l~~l~~~--~g~tiiiv 229 (273)
|++++|||.|++||+.. .+.++.++ .+.|||-|
T Consensus 534 P~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV 570 (604)
T COG4178 534 PKWVFLDEATSALDEETEDRLYQLLKEELPDATVISV 570 (604)
T ss_pred CCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEe
Confidence 99999999999999993 23333333 48899888
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-23 Score=178.94 Aligned_cols=161 Identities=16% Similarity=0.151 Sum_probs=106.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEc-CCcEEEEEcCCCChHHHHHHHHhhC-cc-CccEEEECC----eeCCCC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIP-PVITILLMGFSGSGKSSLVNLMYSV-LS-RSGLVLFAQ----TSSGNS 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~-~Ge~~aivGpnGsGKSTLl~ll~gl-~~-~~G~I~i~g----~~i~~~ 138 (273)
.++++|+. +|.. -.+++|+.. +|++++|+||||||||||+++|++. +. ..+....+. ......
T Consensus 5 ~i~l~nf~-~y~~---------~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~ 74 (213)
T cd03279 5 KLELKNFG-PFRE---------EQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGED 74 (213)
T ss_pred EEEEECCc-CcCC---------ceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCc
Confidence 46777776 5532 244566644 5899999999999999999999964 43 444444321 111224
Q ss_pred CccEEEEeccchhhhccCCcccccccccCCHHHHHHH-----------HHHhcccCCHHHHHHH---Hhc----------
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG-----------LEELSSWMSEGVHHNQ---RCL---------- 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~-----------l~~~~~~LSgGqkq~~---r~l---------- 194 (273)
...+++++|+.... .++..+.+.+.+.+.+. ++.-...||+||+||. +++
T Consensus 75 ~~~v~~~f~~~~~~------~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~ 148 (213)
T cd03279 75 TAEVSFTFQLGGKK------YRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRG 148 (213)
T ss_pred cEEEEEEEEECCeE------EEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhcc
Confidence 45688888876431 13333445554433321 1222277999999986 332
Q ss_pred -CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 195 -RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 195 -~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
.+|+++||||||++||+. +.++++.++ +.|+|++ ..+|+++++++|.+
T Consensus 149 ~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~-~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 149 GARLEALFIDEGFGTLDPEALEAVATALELIRTE-NRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 268999999999999998 345556554 8899888 55799999999864
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-23 Score=198.27 Aligned_cols=175 Identities=16% Similarity=0.175 Sum_probs=127.5
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccE
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i 142 (273)
...+.++|++|.|..+. .+ +++++|-|..++.+|+|||||+|||||||++.|.+. ..|.|.-.-.. ++
T Consensus 387 ~pvi~~~nv~F~y~~~~-~i----y~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~------~~ 455 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP-MI----YKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN------KL 455 (614)
T ss_pred CCeEEEeccccCCCCcc-hh----hhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc------cc
Confidence 45789999999997543 56 999999999999999999999999999999999998 99998654332 23
Q ss_pred EEEeccchhhhccCCccccccc-----c-cCCHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCCEEEE
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDS-----R-GFNYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDDCALM 202 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en-----~-~~~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~iLlL 202 (273)
+++-|....- +....+..++ . ....+.++..+.+++ .+||+|||.|+ ++ +.+|.+|||
T Consensus 456 ~~y~Qh~~e~--ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlL 533 (614)
T KOG0927|consen 456 PRYNQHLAEQ--LDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLL 533 (614)
T ss_pred hhhhhhhHhh--cCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEe
Confidence 3344432211 1222233333 2 234667888888888 78999998876 22 789999999
Q ss_pred cCcCCCCCHH--HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee-ecChhh
Q 024032 203 KNDAEIDDLK--SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP-LDATKR 251 (273)
Q Consensus 203 DEPts~LD~~--~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~-~g~~~~ 251 (273)
||||++||.. ..+.+...+..-+|+++ .+|++|++..+|.+.. .|+...
T Consensus 534 DEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~ 593 (614)
T KOG0927|consen 534 DEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEI 593 (614)
T ss_pred cCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHH
Confidence 9999999998 45555444444455555 5678888888887754 555443
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-22 Score=178.62 Aligned_cols=142 Identities=18% Similarity=0.208 Sum_probs=84.9
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC----------------cc-Ccc--------EEEECCeeC----C--
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV----------------LS-RSG--------LVLFAQTSS----G-- 136 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl----------------~~-~~G--------~I~i~g~~i----~-- 136 (273)
+.+++ |++++|+||||||||||+++|+++ +. .+| +|.+++.+- .
T Consensus 18 ~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 92 (243)
T cd03272 18 IEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPIDKE 92 (243)
T ss_pred cccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCCCC
Confidence 77766 789999999999999999999844 33 344 444443211 0
Q ss_pred --CCCccEEEEeccchhhhccCCccccccc------ccCC---------HHHHHHHH------HHhcccCCHHHHHHH--
Q 024032 137 --NSSHTITMYMEEHNVMRSLQSGFCVYDS------RGFN---------YNRVHEGL------EELSSWMSEGVHHNQ-- 191 (273)
Q Consensus 137 --~~~~~i~~v~q~~~~~~~~~~~~tv~en------~~~~---------~~~~~~~l------~~~~~~LSgGqkq~~-- 191 (273)
..++.+++++++..+++. ..|..+. .++. ..++.+.+ +.-...|||||+||.
T Consensus 93 ~~~i~r~ig~~~~~~~l~~~---~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~l 169 (243)
T cd03272 93 EVRLRRTIGLKKDEYFLDKK---NVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVAL 169 (243)
T ss_pred EEEEEEEEECCCCEEEECCe---EcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHH
Confidence 123345554444332211 0121111 0111 11111111 112267999999986
Q ss_pred -Hhc-----CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEe
Q 024032 192 -RCL-----RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALK 239 (273)
Q Consensus 192 -r~l-----~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~ 239 (273)
+++ .+|+++||||||++||+. +.++++.+ +.++|++ ..||++++|.
T Consensus 170 a~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 170 ALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHhhCCEEEEEE
Confidence 333 358999999999999999 23444433 6777777 6689998874
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-21 Score=169.67 Aligned_cols=147 Identities=12% Similarity=0.124 Sum_probs=101.3
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHh----hCcc-CccEEEECCeeCC--CCCccEEEEeccchhhhcc--CCccccc
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMY----SVLS-RSGLVLFAQTSSG--NSSHTITMYMEEHNVMRSL--QSGFCVY 162 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~----gl~~-~~G~I~i~g~~i~--~~~~~i~~v~q~~~~~~~~--~~~~tv~ 162 (273)
++++.+| +++|+||||||||||+++|. |... ..|.+..+...+. ..+..+++++|++. .+.+ .-.++++
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~-~~~~~v~r~~~~~ 94 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENAN-GKKYTITRSLAIL 94 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCC-CCEEEEEEEhhHh
Confidence 4556677 99999999999999999995 7766 6676652222222 24457888888772 1111 1123777
Q ss_pred ccccC-CHHHHHHHHHHhcccCCHHHHHHH---------Hh-cCCCCEEEEcCcCCCCCHH--H-HH----HHHHhcCCc
Q 024032 163 DSRGF-NYNRVHEGLEELSSWMSEGVHHNQ---------RC-LRSDDCALMKNDAEIDDLK--S-SP----KYVLRRVDF 224 (273)
Q Consensus 163 en~~~-~~~~~~~~l~~~~~~LSgGqkq~~---------r~-l~~p~iLlLDEPts~LD~~--~-~l----~~l~~~~g~ 224 (273)
+|..+ ...++.+.++.....||+||+|+. ++ +.+|+++||||||++||+. . .+ +++.++.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~ 174 (204)
T cd03240 95 ENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNF 174 (204)
T ss_pred hceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCC
Confidence 77533 344566667666689999999962 22 5899999999999999997 3 33 233333367
Q ss_pred EEEEc-------eeCCEEEEEeC
Q 024032 225 AMVVS-------NIAEIYKALKA 240 (273)
Q Consensus 225 tiiiv-------~~ad~i~vl~~ 240 (273)
|||++ ..||+++.|++
T Consensus 175 ~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 175 QLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred EEEEEEecHHHHhhCCEEEEEee
Confidence 88888 45899988854
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=180.88 Aligned_cols=201 Identities=16% Similarity=0.196 Sum_probs=149.0
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchh-----------------h------------hccCCCCceEEEEEEEEeecC
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMER-----------------L------------ALIAPDGLNELRHKFLSYRSG 79 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-----------------~------------~~~~~~~~i~~~~v~~~y~~g 79 (273)
|..+.....++.+....+.|+.++.+.-. + +....+..+++++|+++-+.+
T Consensus 367 f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~ 446 (659)
T KOG0060|consen 367 FGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN 446 (659)
T ss_pred HHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC
Confidence 44445555666777788888888765210 0 011124579999999988775
Q ss_pred CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCc
Q 024032 80 DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158 (273)
Q Consensus 80 ~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~ 158 (273)
+..+ ++++||+|++|+-+-|.||||||||+|+|.++|+++ .+|.+......- .+.+-|++|.|.. ..
T Consensus 447 g~~l----ie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~---~~~lfflPQrPYm-----t~ 514 (659)
T KOG0060|consen 447 GDLL----IENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG---PKDLFFLPQRPYM-----TL 514 (659)
T ss_pred Ccee----eeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC---CCceEEecCCCCc-----cc
Confidence 4455 889999999999999999999999999999999999 999998644321 1447788888763 22
Q ss_pred cccccc------------ccCCHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEE
Q 024032 159 FCVYDS------------RGFNYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALM 202 (273)
Q Consensus 159 ~tv~en------------~~~~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlL 202 (273)
.|.+|- ...+.+++.+.|+.+. ..||+||+||. |+ .++|++.||
T Consensus 515 GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiL 594 (659)
T KOG0060|consen 515 GTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAIL 594 (659)
T ss_pred cchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEe
Confidence 255553 1234566666666554 56999999997 44 799999999
Q ss_pred cCcCCCCCHH--HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCC
Q 024032 203 KNDAEIDDLK--SSPKYVLRRVDFAMVVS-------NIAEIYKALKAG 241 (273)
Q Consensus 203 DEPts~LD~~--~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G 241 (273)
||-||++|.. ..+-+..++.|+|.|-| ++-|.++-|+.+
T Consensus 595 DE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 595 DECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred echhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhhhEEEEecCC
Confidence 9999999887 66777777779999988 556888888753
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-21 Score=165.56 Aligned_cols=190 Identities=16% Similarity=0.215 Sum_probs=140.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccC-----ccEEEECCeeCCC---
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSR-----SGLVLFAQTSSGN--- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~-----~G~I~i~g~~i~~--- 137 (273)
++.++|++..+...+-.+ ++++++|+++..||+-|+||.||||||-..|+|+|..++ .-...+++.++-.
T Consensus 3 LLDIrnL~IE~~TsqG~v--K~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 3 LLDIRNLTIEFKTSQGWV--KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred cccccceEEEEecCCCce--EeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 567788888776554444 459999999999999999999999999999999998763 3444566665432
Q ss_pred ------CCccEEEEeccchhh--hccCCccccccc-------------ccCCHHHHHHHHHHhc------------ccCC
Q 024032 138 ------SSHTITMYMEEHNVM--RSLQSGFCVYDS-------------RGFNYNRVHEGLEELS------------SWMS 184 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~--~~~~~~~tv~en-------------~~~~~~~~~~~l~~~~------------~~LS 184 (273)
..+.++++||++..- |....+..+.+| .+..+.++.+.+.+++ .+|.
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 224578899987531 000000111122 2334566777888887 6799
Q ss_pred HHHHHHH----HhcCCCCEEEEcCcCCCCCHHH------HHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ----RCLRSDDCALMKNDAEIDDLKS------SPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~----r~l~~p~iLlLDEPts~LD~~~------~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
.||-|++ +++.+|++||.||||+++++.. ++..+++..|.||+++ ..||+|-||.-|+-++.
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES 240 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES 240 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc
Confidence 9998875 3378999999999999999992 2345566668999988 67899999999999999
Q ss_pred cChhhhccChh
Q 024032 247 DATKRLFSAPG 257 (273)
Q Consensus 247 g~~~~l~~~~~ 257 (273)
+..+++.+.|.
T Consensus 241 a~~e~l~~~Ph 251 (330)
T COG4170 241 APSEELVTMPH 251 (330)
T ss_pred cchhHHhcCCC
Confidence 99999987653
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-21 Score=179.68 Aligned_cols=159 Identities=17% Similarity=0.197 Sum_probs=120.5
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccE
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i 142 (273)
+..+-+.+|+|.|+ |.++. ++.++|-|.--..+|||||||.||||||++|.|-+. ..|+.+- ..+-+|
T Consensus 584 PPvLGlH~VtFgy~-gqkpL----FkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RK------nhrL~i 652 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP-GQKPL----FKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRK------NHRLRI 652 (807)
T ss_pred CCeeecccccccCC-CCCch----hhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhc------cceeee
Confidence 34788999999996 45677 999999999999999999999999999999999887 8887653 234568
Q ss_pred EEEeccchhhhccCCccccccc----ccCCHHHHHHHHHHhc----------ccCCHHHHHHHH----hcCCCCEEEEcC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDS----RGFNYNRVHEGLEELS----------SWMSEGVHHNQR----CLRSDDCALMKN 204 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en----~~~~~~~~~~~l~~~~----------~~LSgGqkq~~r----~l~~p~iLlLDE 204 (273)
|++-|+..-- +...-|..++ ..++++.++..|-.++ ..|||||+-|+. ++..|++|||||
T Consensus 653 G~FdQh~~E~--L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDE 730 (807)
T KOG0066|consen 653 GWFDQHANEA--LNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDE 730 (807)
T ss_pred echhhhhHHh--hccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecC
Confidence 8877765531 1111222222 2456788888888777 679999988763 389999999999
Q ss_pred cCCCCCHH--HHHHHHHhcCCcEEEEceeCCEE
Q 024032 205 DAEIDDLK--SSPKYVLRRVDFAMVVSNIAEIY 235 (273)
Q Consensus 205 Pts~LD~~--~~l~~l~~~~g~tiiiv~~ad~i 235 (273)
||++||+. ..+.+...++.-.||||.|..|+
T Consensus 731 PTNNLDIESIDALaEAIney~GgVi~VsHDeRL 763 (807)
T KOG0066|consen 731 PTNNLDIESIDALAEAINEYNGGVIMVSHDERL 763 (807)
T ss_pred CCCCcchhhHHHHHHHHHhccCcEEEEecccce
Confidence 99999999 44555445556678888665554
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-22 Score=174.18 Aligned_cols=147 Identities=14% Similarity=0.101 Sum_probs=84.3
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCC-ccEEEE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSS-HTITMY 145 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~-~~i~~v 145 (273)
++++|.. +| ++..+ +++++| ++++|+||||||||||+++|...+ |.+....+ ++++++
T Consensus 6 l~l~nfk-~~--~~~~~----l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~---------G~~~~~~~~~~i~~~ 64 (212)
T cd03274 6 LVLENFK-SY--AGEQV----IGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVF---------GFRASKMRQKKLSDL 64 (212)
T ss_pred EEEECcc-cC--CCCee----eccCCC-----CeEEEECCCCCCHHHHHHHHHHHh---------ccCHHHhhhhhHHHH
Confidence 5566653 55 45556 888887 799999999999999999998331 11111111 122233
Q ss_pred eccchhhhccCCcccccccc---------------cC---------------CHHHHHHHHHHhcccCCHHHHHHH---H
Q 024032 146 MEEHNVMRSLQSGFCVYDSR---------------GF---------------NYNRVHEGLEELSSWMSEGVHHNQ---R 192 (273)
Q Consensus 146 ~q~~~~~~~~~~~~tv~en~---------------~~---------------~~~~~~~~l~~~~~~LSgGqkq~~---r 192 (273)
+++....+ .+++.++. +. ....+.+..+.....||+|||||. +
T Consensus 65 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~ 140 (212)
T cd03274 65 IHNSAGHP----NLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLAL 140 (212)
T ss_pred hcCCCCCC----CCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHH
Confidence 32222111 01111110 00 000001111222267999999976 3
Q ss_pred hc-----CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeC
Q 024032 193 CL-----RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKA 240 (273)
Q Consensus 193 ~l-----~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~ 240 (273)
++ .+|++++|||||++||+. +.++++.+ +.|+|++ ++||++++|..
T Consensus 141 al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 141 VFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK--NAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECcHHHHHhCCEEEEEEe
Confidence 22 247999999999999998 33455543 4455555 67899999853
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-20 Score=168.12 Aligned_cols=140 Identities=16% Similarity=0.144 Sum_probs=94.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc-C-ccEEEECCe-eC-C------CCCccEEEEeccchhh--h---ccCCccccc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQT-SS-G------NSSHTITMYMEEHNVM--R---SLQSGFCVY 162 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~-~-~G~I~i~g~-~i-~------~~~~~i~~v~q~~~~~--~---~~~~~~tv~ 162 (273)
..+++||||||||||||+++|++++. . .|++...+. ++ . ....++.+++|++... + .....+||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 45999999999999999999999987 4 568887766 32 1 1234788999985310 0 011223444
Q ss_pred ccc-------------cCCHHHHHHHHHHhc-----------------------------ccCCHHHHHHH---Hhc---
Q 024032 163 DSR-------------GFNYNRVHEGLEELS-----------------------------SWMSEGVHHNQ---RCL--- 194 (273)
Q Consensus 163 en~-------------~~~~~~~~~~l~~~~-----------------------------~~LSgGqkq~~---r~l--- 194 (273)
++. ....+++.+.++.++ ..||+||||+. +++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 321 112345555665553 46899999986 222
Q ss_pred --CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEe
Q 024032 195 --RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALK 239 (273)
Q Consensus 195 --~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~ 239 (273)
.+|+++||||||++||+. +.++++. + |.|+|++ +.||+++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~-g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K-GSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECCHHHHHhCCEEEEEE
Confidence 578999999999999999 2234443 3 7888888 5578886653
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-20 Score=191.39 Aligned_cols=75 Identities=9% Similarity=0.102 Sum_probs=62.8
Q ss_pred ccCCHHHHHHHHh----cCCC---CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE--
Q 024032 181 SWMSEGVHHNQRC----LRSD---DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL-- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r~----l~~p---~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl-- 238 (273)
.+|||||+||..+ +.+| +++||||||+|||+. +.++++.++ |.|||++ ..||+|++|
T Consensus 829 ~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~-G~TVIiitH~~~~i~~aD~ii~Lgp 907 (943)
T PRK00349 829 TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDK-GNTVVVIEHNLDVIKTADWIIDLGP 907 (943)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhCCEEEEecC
Confidence 6799999998732 6777 999999999999999 335556544 8999999 458999999
Q ss_pred ----eCCeEeeecChhhhccCh
Q 024032 239 ----KAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 239 ----~~G~i~~~g~~~~l~~~~ 256 (273)
++|+|++.|+++++...+
T Consensus 908 ~~G~~~G~Iv~~Gt~~el~~~~ 929 (943)
T PRK00349 908 EGGDGGGEIVATGTPEEVAKVE 929 (943)
T ss_pred CcCCCCCEEEEeCCHHHHHhCc
Confidence 799999999999998654
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-20 Score=197.75 Aligned_cols=73 Identities=12% Similarity=0.069 Sum_probs=61.3
Q ss_pred ccCCHHHHHHH---Hhc----CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEe-
Q 024032 181 SWMSEGVHHNQ---RCL----RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALK- 239 (273)
Q Consensus 181 ~~LSgGqkq~~---r~l----~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~- 239 (273)
.+|||||+||. +++ .+|++|||||||+|||+. +.++++.++ |.|||++ ..||++++|.
T Consensus 808 ~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~-G~TVIiIsHdl~~i~~aDrVi~L~p 886 (1809)
T PRK00635 808 SSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ-GHTVVIIEHNMHVVKVADYVLELGP 886 (1809)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhCCEEEEEcc
Confidence 67999999987 333 599999999999999999 345566655 8999998 5689999996
Q ss_pred -----CCeEeeecChhhhcc
Q 024032 240 -----AGDSKPLDATKRLFS 254 (273)
Q Consensus 240 -----~G~i~~~g~~~~l~~ 254 (273)
+|+++..|+++++..
T Consensus 887 ~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 887 EGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCCCCCEEEEeCCHHHHHh
Confidence 799999999999874
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-20 Score=177.02 Aligned_cols=184 Identities=14% Similarity=0.117 Sum_probs=111.6
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEE--EECCeeCCCC-C
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV--LFAQTSSGNS-S 139 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I--~i~g~~i~~~-~ 139 (273)
...+.+.+++++|. +..+ ++|+.|++.+|+.+||+|||||||||+|++|.|-.. ..=.+ +...+.+... .
T Consensus 73 s~dvk~~sls~s~~--g~~l----~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 73 SRDVKIESLSLSFH--GVEL----IKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEK 146 (614)
T ss_pred cccceeeeeeeccC--Ccee----eeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchH
Confidence 45789999999985 4667 999999999999999999999999999999998643 22222 2222222110 0
Q ss_pred ccEEEEec----cchhhhccC-----C--------cccccccc-cCC----HHHHHHHHHHhc----------ccCCHHH
Q 024032 140 HTITMYME----EHNVMRSLQ-----S--------GFCVYDSR-GFN----YNRVHEGLEELS----------SWMSEGV 187 (273)
Q Consensus 140 ~~i~~v~q----~~~~~~~~~-----~--------~~tv~en~-~~~----~~~~~~~l~~~~----------~~LSgGq 187 (273)
..+-.+++ ....+..+. . ..++++.. ..+ ..++.+++..++ ..||||+
T Consensus 147 ~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 147 QAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchH
Confidence 00001110 000000000 0 00000000 000 111122222222 6799999
Q ss_pred HHHHH---h-cCCCCEEEEcCcCCCCCHHH--HHHHHHhcCCc-EEEEc--------eeCCEEEEEeCCe-EeeecChhh
Q 024032 188 HHNQR---C-LRSDDCALMKNDAEIDDLKS--SPKYVLRRVDF-AMVVS--------NIAEIYKALKAGD-SKPLDATKR 251 (273)
Q Consensus 188 kq~~r---~-l~~p~iLlLDEPts~LD~~~--~l~~l~~~~g~-tiiiv--------~~ad~i~vl~~G~-i~~~g~~~~ 251 (273)
+.|.+ + +.+|++|||||||++||+.. -+.++..++.. +++++ ..|..|+.|++++ +.+.|+.+.
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydq 306 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQ 306 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHH
Confidence 88763 3 78999999999999999993 34443333355 66666 6789999999999 556777766
Q ss_pred hc
Q 024032 252 LF 253 (273)
Q Consensus 252 l~ 253 (273)
+.
T Consensus 307 y~ 308 (614)
T KOG0927|consen 307 YV 308 (614)
T ss_pred Hh
Confidence 54
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=172.88 Aligned_cols=181 Identities=14% Similarity=0.173 Sum_probs=139.6
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeC-CC----
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS-GN---- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i-~~---- 137 (273)
+..+++++++..-+.+ .+ ++++|||+|+.|||+||.|=.|-|-+-|+.+|+|+.+ .+|+|.++|+++ ..
T Consensus 255 ~~vL~V~~L~v~~~~~-~~----~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~ 329 (501)
T COG3845 255 EVVLEVEDLSVKDRRG-VT----AVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPR 329 (501)
T ss_pred CeEEEEeeeEeecCCC-Cc----eeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHH
Confidence 4578999999865433 23 3999999999999999999999999999999999998 779999999997 21
Q ss_pred --CCccEEEEeccchhhhccCCccccccccc--------------CCHHHH----HHHHHHhc----------ccCCHHH
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSRG--------------FNYNRV----HEGLEELS----------SWMSEGV 187 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~~--------------~~~~~~----~~~l~~~~----------~~LSgGq 187 (273)
.+.-++++|.+.. -..+...+|+.||.- ++...+ .+.++++. ..||||.
T Consensus 330 ~~r~~G~~~VPedR~-~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGN 408 (501)
T COG3845 330 ERRRLGLAYVPEDRH-GHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGN 408 (501)
T ss_pred HHHhcCCccCChhhc-cCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcc
Confidence 2345777777653 223345668888821 122333 33444444 6799999
Q ss_pred HHHHHh----cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecCh
Q 024032 188 HHNQRC----LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 188 kq~~r~----l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~ 249 (273)
+||.-+ .++|++||+.+||-|||.. +.+.+.+++ |++|+++ .+||||+||.+|+++...++
T Consensus 409 qQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~-G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~ 487 (501)
T COG3845 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDA-GKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPP 487 (501)
T ss_pred eehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhc-CCEEEEEehhHHHHHHhhheeeeeeCCceeccccc
Confidence 998622 7899999999999999998 334455555 9999998 78999999999999988777
Q ss_pred hh
Q 024032 250 KR 251 (273)
Q Consensus 250 ~~ 251 (273)
++
T Consensus 488 ~~ 489 (501)
T COG3845 488 EE 489 (501)
T ss_pred cc
Confidence 65
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=187.43 Aligned_cols=71 Identities=10% Similarity=0.101 Sum_probs=58.9
Q ss_pred ccCCHHHHHHHHh----cC---CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE--
Q 024032 181 SWMSEGVHHNQRC----LR---SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL-- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r~----l~---~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl-- 238 (273)
.+|||||+||..+ +. +|+++||||||+|||+. +.++++.++ |.|||++ ..||++++|
T Consensus 827 ~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~-G~TVIvi~H~~~~i~~aD~ii~Lgp 905 (924)
T TIGR00630 827 TTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ-GNTVVVIEHNLDVIKTADYIIDLGP 905 (924)
T ss_pred ccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHhCCEEEEecC
Confidence 6799999998732 33 59999999999999999 345556544 8999999 458999999
Q ss_pred ----eCCeEeeecChhhh
Q 024032 239 ----KAGDSKPLDATKRL 252 (273)
Q Consensus 239 ----~~G~i~~~g~~~~l 252 (273)
++|++++.|+++++
T Consensus 906 ~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 906 EGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CccCCCCEEEEeCCHHHh
Confidence 79999999998875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-19 Score=153.97 Aligned_cols=183 Identities=19% Similarity=0.189 Sum_probs=127.8
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
...|++.++.|+|...+ ++ +-|+|++++.|....+||.||||||||||+|+|-.- -.|.|.+.|.+.-.
T Consensus 11 ~~aievsgl~f~y~~~d-P~----~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~ 85 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD-PI----FFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE 85 (291)
T ss_pred cceEEEeccEEecccCC-ce----EEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc
Confidence 56799999999997544 66 999999999999999999999999999999999766 67999999876421
Q ss_pred -----------CCccEEEEeccchhhhccCCccccccc----ccCCHHHHHHHHHHhc-------ccCCHHHHHHHHh--
Q 024032 138 -----------SSHTITMYMEEHNVMRSLQSGFCVYDS----RGFNYNRVHEGLEELS-------SWMSEGVHHNQRC-- 193 (273)
Q Consensus 138 -----------~~~~i~~v~q~~~~~~~~~~~~tv~en----~~~~~~~~~~~l~~~~-------~~LSgGqkq~~r~-- 193 (273)
+.+..++ ..+..+ ...+++..- .+.+.++-+..++.+. ..+|.|||+|+.+
T Consensus 86 ~Sgdl~YLGgeW~~~~~~-agevpl----q~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicM 160 (291)
T KOG2355|consen 86 SSGDLSYLGGEWSKTVGI-AGEVPL----QGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICM 160 (291)
T ss_pred ccCceeEecccccccccc-cccccc----cccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHH
Confidence 1111111 001110 111122211 1223333334444433 7799999988633
Q ss_pred --cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee---ecChhhhcc
Q 024032 194 --LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP---LDATKRLFS 254 (273)
Q Consensus 194 --l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~---~g~~~~l~~ 254 (273)
++.-++|+|||-|-.||.. +.+++-+++.|.||+.. +.+.+++.|.+|+++. .+...++-+
T Consensus 161 GLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i~e~~~ 240 (291)
T KOG2355|consen 161 GLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKIKEFST 240 (291)
T ss_pred hcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchhhhhhc
Confidence 5556999999999999998 34555566679999998 4568999999999987 445555544
Q ss_pred Ch
Q 024032 255 AP 256 (273)
Q Consensus 255 ~~ 256 (273)
.+
T Consensus 241 ~~ 242 (291)
T KOG2355|consen 241 SP 242 (291)
T ss_pred cc
Confidence 43
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-19 Score=159.34 Aligned_cols=137 Identities=17% Similarity=0.135 Sum_probs=86.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee--CCC--------CCccEEEEec--cchhhhccCCcccccc---
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS--SGN--------SSHTITMYME--EHNVMRSLQSGFCVYD--- 163 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~--i~~--------~~~~i~~v~q--~~~~~~~~~~~~tv~e--- 163 (273)
+++|+||||||||||+.+|++++. ..|.+...+.. +.. ....+...++ +... ..+..++.+
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~---~~~~~~~~~~~~ 100 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEE---KTFRRIITGGSS 100 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcE---EEEEEEEECCce
Confidence 999999999999999999999887 66777543321 100 0122333333 2111 011111111
Q ss_pred -----cccCCHHHHHHHHHHhc-------------------------------ccCCHHHHHHH---Hh-c----CCCCE
Q 024032 164 -----SRGFNYNRVHEGLEELS-------------------------------SWMSEGVHHNQ---RC-L----RSDDC 199 (273)
Q Consensus 164 -----n~~~~~~~~~~~l~~~~-------------------------------~~LSgGqkq~~---r~-l----~~p~i 199 (273)
+...+.+.+.+.++.++ ..||+||||+. ++ + .+|++
T Consensus 101 ~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ 180 (247)
T cd03275 101 SYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPF 180 (247)
T ss_pred EEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCE
Confidence 12233444444444433 46899999976 33 3 25899
Q ss_pred EEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeC
Q 024032 200 ALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKA 240 (273)
Q Consensus 200 LlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~ 240 (273)
+||||||++||+. +.++++.++ |.|+|+| ..||++++|..
T Consensus 181 lllDEPt~~LD~~~~~~l~~~i~~~~~~-g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 181 FVLDEVDAALDNTNVGKVASYIREQAGP-NFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EEEecccccCCHHHHHHHHHHHHHhccC-CcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999998 345555544 8898888 56899988853
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.5e-19 Score=152.30 Aligned_cols=143 Identities=13% Similarity=0.107 Sum_probs=91.4
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC------CCCccEEEEeccchhhhccCCccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG------NSSHTITMYMEEHNVMRSLQSGFC 160 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~------~~~~~i~~v~q~~~~~~~~~~~~t 160 (273)
++++++++.+| +.+|+||||||||||+.+|.-.+. ... ....|.... .....+..++++...++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~------- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA------- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-------
Confidence 67778888887 889999999999999999975433 211 111122111 12344666676655321
Q ss_pred cccccc--CCHHHHHHHHHHhc------ccCCHHHHHHHH---h-----cCCCCEEEEcCcCCCCCHH------HHHHHH
Q 024032 161 VYDSRG--FNYNRVHEGLEELS------SWMSEGVHHNQR---C-----LRSDDCALMKNDAEIDDLK------SSPKYV 218 (273)
Q Consensus 161 v~en~~--~~~~~~~~~l~~~~------~~LSgGqkq~~r---~-----l~~p~iLlLDEPts~LD~~------~~l~~l 218 (273)
|.. ...+.+.++++.-. .+||+||||+.. + +.+|+++||||||++||+. +.++++
T Consensus 83 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~ 159 (198)
T cd03276 83 ---NPLCVLSQDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKE 159 (198)
T ss_pred ---CcCCHHHHHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHH
Confidence 211 22345555555411 789999999762 2 3799999999999999998 334454
Q ss_pred Hhc--CCcEEEEc-------eeCCEEEEEeCCe
Q 024032 219 LRR--VDFAMVVS-------NIAEIYKALKAGD 242 (273)
Q Consensus 219 ~~~--~g~tiiiv-------~~ad~i~vl~~G~ 242 (273)
.++ .+.||+++ ...|+|.+|..++
T Consensus 160 ~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 160 AKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 433 13577777 2238888887643
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-19 Score=169.39 Aligned_cols=166 Identities=16% Similarity=0.187 Sum_probs=130.6
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
..+++..|+|.|..+...+ +.+++++++.-..++++|+||+||||++|++.|-.. ..|.+.+.+ |.+++
T Consensus 361 p~l~i~~V~f~y~p~~y~~----~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~------r~ri~ 430 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQW----RKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP------RLRIK 430 (582)
T ss_pred CeeEEEeeeccCCCcchhh----hhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc------cceec
Confidence 4789999999998765455 999999999999999999999999999999999777 888876643 46788
Q ss_pred EEeccchhhhccCCccccc--c-----cccCCHHHHHHHHHHhc----------ccCCHHHHHHHH--h--cCCCCEEEE
Q 024032 144 MYMEEHNVMRSLQSGFCVY--D-----SRGFNYNRVHEGLEELS----------SWMSEGVHHNQR--C--LRSDDCALM 202 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~--e-----n~~~~~~~~~~~l~~~~----------~~LSgGqkq~~r--~--l~~p~iLlL 202 (273)
+..|....+. ...|. | .++...+++++.+..+| ..||||||-|+. + ..+|-+|+|
T Consensus 431 ~f~Qhhvd~l----~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVL 506 (582)
T KOG0062|consen 431 YFAQHHVDFL----DKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVL 506 (582)
T ss_pred chhHhhhhHH----HHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEe
Confidence 8888665431 11221 1 14567889999999988 569999987762 2 789999999
Q ss_pred cCcCCCCCHH--HHH-HHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee
Q 024032 203 KNDAEIDDLK--SSP-KYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 203 DEPts~LD~~--~~l-~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~ 245 (273)
||||+.||.. ..+ +.+. .++-.||+| ..|+.+++.++|++..
T Consensus 507 DEPTNhLD~dsl~AL~~Al~-~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 507 DEPTNHLDRDSLGALAKALK-NFNGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cCCCccccHHHHHHHHHHHH-hcCCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999 334 4444 344556666 5689999999999975
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-19 Score=154.24 Aligned_cols=134 Identities=13% Similarity=0.119 Sum_probs=89.6
Q ss_pred eeeeeeEEcCCc-EEEEEcCCCChHHHHHHHHh-hCcc-Ccc-EEEECCeeCCCCCccEEEEeccchhhhccCCcccccc
Q 024032 88 IQKGGMDIPPVI-TILLMGFSGSGKSSLVNLMY-SVLS-RSG-LVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYD 163 (273)
Q Consensus 88 L~~is~~i~~Ge-~~aivGpnGsGKSTLl~ll~-gl~~-~~G-~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~e 163 (273)
+-++||++.+|+ +++|.||||||||||+++|+ +.+. ..| .+-.. .. ..++++.|....
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~-~~-----~~~~~~~~~~~~------------ 78 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAA-EG-----SSLPVFENIFAD------------ 78 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccc-cc-----ccCcCccEEEEe------------
Confidence 567899999995 89999999999999999998 2222 233 11110 00 012222222110
Q ss_pred cccCCHHHHHHHHHHhcccCCHHHHHHHHh---cCCCCEEEEcCcCCCCCHHH-------HHHHHHhcCCcEEEEc----
Q 024032 164 SRGFNYNRVHEGLEELSSWMSEGVHHNQRC---LRSDDCALMKNDAEIDDLKS-------SPKYVLRRVDFAMVVS---- 229 (273)
Q Consensus 164 n~~~~~~~~~~~l~~~~~~LSgGqkq~~r~---l~~p~iLlLDEPts~LD~~~-------~l~~l~~~~g~tiiiv---- 229 (273)
.+.. +.+..-.+.+|+||+|+..+ +.+|+++|+|||++++|+.. .++.+.+. +.++|++
T Consensus 79 -lg~~-----~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~-~~~vi~~tH~~ 151 (200)
T cd03280 79 -IGDE-----QSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLER-GALVIATTHYG 151 (200)
T ss_pred -cCch-----hhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEECCHH
Confidence 0100 11222236789999987633 78999999999999999982 23444443 8888888
Q ss_pred ---eeCCEEEEEeCCeEeee
Q 024032 230 ---NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 230 ---~~ad~i~vl~~G~i~~~ 246 (273)
.++|++++|++|++..+
T Consensus 152 ~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 152 ELKAYAYKREGVENASMEFD 171 (200)
T ss_pred HHHHHHhcCCCeEEEEEEEe
Confidence 56799999999999866
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.1e-19 Score=167.75 Aligned_cols=171 Identities=16% Similarity=0.143 Sum_probs=107.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMY 145 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v 145 (273)
.|.+.+.+..| |++.+ |++-++++..|..+||+|+||+|||||||+|+. |.|......- +.+ +..
T Consensus 80 Di~~~~fdLa~--G~k~L----L~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-----~~v~~f~veq-E~~---g~~ 144 (582)
T KOG0062|consen 80 DIHIDNFDLAY--GGKIL----LNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-----GQVSGFHVEQ-EVR---GDD 144 (582)
T ss_pred ceeeeeeeeee--cchhh----hcCCceeeecccccceeCCCCCcHHHHHHHHHh-----cCcCccCchh-hee---ccc
Confidence 56666677666 67777 999999999999999999999999999999996 3443322110 000 000
Q ss_pred eccchhhhccCCccccccc--------ccCCHHHHHH-HHHHhc----------ccCCHHHHHHH---Hh-cCCCCEEEE
Q 024032 146 MEEHNVMRSLQSGFCVYDS--------RGFNYNRVHE-GLEELS----------SWMSEGVHHNQ---RC-LRSDDCALM 202 (273)
Q Consensus 146 ~q~~~~~~~~~~~~tv~en--------~~~~~~~~~~-~l~~~~----------~~LSgGqkq~~---r~-l~~p~iLlL 202 (273)
.. .+...+.....+.+. .....+++.. +|..++ ..||||.|-|. || +.+||||||
T Consensus 145 t~--~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLL 222 (582)
T KOG0062|consen 145 TE--ALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLL 222 (582)
T ss_pred hH--HHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEee
Confidence 00 000000001111111 1112233333 666666 78999998765 44 789999999
Q ss_pred cCcCCCCCHHHH--HHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEe-eecChhhhc
Q 024032 203 KNDAEIDDLKSS--PKYVLRRVDFAMVVS--------NIAEIYKALKAGDSK-PLDATKRLF 253 (273)
Q Consensus 203 DEPts~LD~~~~--l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~-~~g~~~~l~ 253 (273)
||||+.||.... +....+....|+|+| +.|..|+.+++-++- +.|+-+++.
T Consensus 223 DEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 223 DEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred cCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 999999999944 444444446788888 345666777766653 356655554
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-18 Score=163.83 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=96.2
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc------
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG------ 166 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~------ 166 (273)
+|..||+++++||||-||||++++|+|.++ ++|. ..+ -+++|-+|-... .+..||.+...
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~-----~~vSyKPQyI~~----~~~gtV~~~l~~~~~~~ 429 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED-----LKVSYKPQYISP----DYDGTVEDLLRSAIRSA 429 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc-----ceEeecceeecC----CCCCcHHHHHHHhhhhh
Confidence 356678999999999999999999999999 9997 222 245666664332 23446655310
Q ss_pred C----------CHHHHHHHHHHhcccCCHHHHHHHHh----cCCCCEEEEcCcCCCCCHHH------HHHHHHhcCCcEE
Q 024032 167 F----------NYNRVHEGLEELSSWMSEGVHHNQRC----LRSDDCALMKNDAEIDDLKS------SPKYVLRRVDFAM 226 (273)
Q Consensus 167 ~----------~~~~~~~~l~~~~~~LSgGqkq~~r~----l~~p~iLlLDEPts~LD~~~------~l~~l~~~~g~ti 226 (273)
+ ..-.++..+++-...|||||.||+++ .++++++|||||++.||..+ .++++.+..++|.
T Consensus 430 ~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta 509 (591)
T COG1245 430 FGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTA 509 (591)
T ss_pred cccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceE
Confidence 0 01123445555558899999998732 68999999999999999994 4677777668899
Q ss_pred EEce--------eCCEEEEEeC
Q 024032 227 VVSN--------IAEIYKALKA 240 (273)
Q Consensus 227 iiv~--------~ad~i~vl~~ 240 (273)
++|. ++||++|++.
T Consensus 510 ~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 510 LVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred EEEecceehhhhhhceEEEEec
Confidence 9883 4689888853
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-18 Score=175.26 Aligned_cols=163 Identities=15% Similarity=0.123 Sum_probs=130.7
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc----CccEEEECCeeCCC--CCccEEEEeccchhhhccCCccc
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS----RSGLVLFAQTSSGN--SSHTITMYMEEHNVMRSLQSGFC 160 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~----~~G~I~i~g~~i~~--~~~~i~~v~q~~~~~~~~~~~~t 160 (273)
+|+|+++-+++|+.+.++||.|||||||+++++|-.. ..|+|.++|.+..+ .++.++|..|+..+++. +|
T Consensus 130 il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~----lT 205 (1391)
T KOG0065|consen 130 ILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPE----LT 205 (1391)
T ss_pred eecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccce----eE
Confidence 4999999999999999999999999999999999765 37899999998875 34678888888887554 49
Q ss_pred cccccc--------------CCHHH-----HHHHHHHhc--------------ccCCHHHHHHHHh----cCCCCEEEEc
Q 024032 161 VYDSRG--------------FNYNR-----VHEGLEELS--------------SWMSEGVHHNQRC----LRSDDCALMK 203 (273)
Q Consensus 161 v~en~~--------------~~~~~-----~~~~l~~~~--------------~~LSgGqkq~~r~----l~~p~iLlLD 203 (273)
|+|... .++.+ .+..++.++ ...|||||+|+.. +.+|+++.+|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 988621 12222 234566666 5699999888732 7899999999
Q ss_pred CcCCCCCHH------HHHHHHHhcCCcEEEEc---------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 204 NDAEIDDLK------SSPKYVLRRVDFAMVVS---------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 204 EPts~LD~~------~~l~~l~~~~g~tiiiv---------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
|+|.|||.. ..++.+.+..+.|++++ .+.|.|++|.+|+++.+|+.++.+
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 999999999 33455666667788877 556999999999999999998875
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-17 Score=157.28 Aligned_cols=147 Identities=18% Similarity=0.245 Sum_probs=111.1
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMY 145 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v 145 (273)
|.++|+-.--+.+ ..+ +..++|+|++|-.+-|.||||||||+|+++|.|+++ ..|...+- .+.++-|+
T Consensus 482 I~lenIpvItP~~-~vv----v~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P------~~~~mFYI 550 (728)
T KOG0064|consen 482 IILENIPVITPAG-DVL----VPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP------RPNNIFYI 550 (728)
T ss_pred eEEecCceeccCc-cee----ecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC------CCcceEec
Confidence 6677776655544 345 899999999999999999999999999999999999 88877653 23347777
Q ss_pred eccchhhhccCCccccccc------------ccCCHHHHHHHHHHhc------------------ccCCHHHHHHH---H
Q 024032 146 MEEHNVMRSLQSGFCVYDS------------RGFNYNRVHEGLEELS------------------SWMSEGVHHNQ---R 192 (273)
Q Consensus 146 ~q~~~~~~~~~~~~tv~en------------~~~~~~~~~~~l~~~~------------------~~LSgGqkq~~---r 192 (273)
||.|.. ...|.+|- .++.+++....++.+. ..||||||||. |
T Consensus 551 PQRPYm-----s~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mAR 625 (728)
T KOG0064|consen 551 PQRPYM-----SGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMAR 625 (728)
T ss_pred cCCCcc-----CcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHH
Confidence 887762 23344442 3455666666555543 56999999987 4
Q ss_pred h-cCCCCEEEEcCcCCCC--CHHHHHHHHHhcCCcEEEEc
Q 024032 193 C-LRSDDCALMKNDAEID--DLKSSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~L--D~~~~l~~l~~~~g~tiiiv 229 (273)
+ .++|+..+|||-||+. |.+..+-+..+..|.+.+-|
T Consensus 626 m~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsi 665 (728)
T KOG0064|consen 626 MFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSI 665 (728)
T ss_pred HHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEe
Confidence 4 7999999999999987 55577777777778888877
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-17 Score=142.56 Aligned_cols=114 Identities=16% Similarity=0.107 Sum_probs=73.1
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGF 167 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~ 167 (273)
+++++|+. |++++|+||||||||||+|+|+|... +...|.++... .+++|...+ +..+|+.||...
T Consensus 17 ~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~----l~~~G~~v~a~----~~~~q~~~l----~~~~~~~d~l~~ 82 (199)
T cd03283 17 ANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI----LAQAGAPVCAS----SFELPPVKI----FTSIRVSDDLRD 82 (199)
T ss_pred cceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH----HHHcCCEEecC----ccCcccceE----EEeccchhcccc
Confidence 78877765 79999999999999999999998653 11233333221 245663333 555688887433
Q ss_pred CH-------HHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHHH-------HHHHHHhcCCcEEEEc
Q 024032 168 NY-------NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKS-------SPKYVLRRVDFAMVVS 229 (273)
Q Consensus 168 ~~-------~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~~-------~l~~l~~~~g~tiiiv 229 (273)
.. .++.++++.++ +.+|+++|||||++|+|+.. .++.+.+. +.|+|++
T Consensus 83 ~~s~~~~e~~~~~~iL~~~~-------------~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~-~~tiiiv 144 (199)
T cd03283 83 GISYFYAELRRLKEIVEKAK-------------KGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNK-NTIGIIS 144 (199)
T ss_pred ccChHHHHHHHHHHHHHhcc-------------CCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHC-CCEEEEE
Confidence 21 11111111111 24999999999999999982 23445444 8888888
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.9e-17 Score=141.59 Aligned_cols=62 Identities=11% Similarity=-0.041 Sum_probs=45.3
Q ss_pred ccCCHHHHHHHHh--------cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCC-cEEEEc--------eeCC--EE
Q 024032 181 SWMSEGVHHNQRC--------LRSDDCALMKNDAEIDDLK------SSPKYVLRRVD-FAMVVS--------NIAE--IY 235 (273)
Q Consensus 181 ~~LSgGqkq~~r~--------l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g-~tiiiv--------~~ad--~i 235 (273)
..||+||||+..+ +.+|+++|+||||++||+. +.+..+.++.| .|+|++ ..+| +|
T Consensus 125 ~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v 204 (213)
T cd03277 125 HHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTV 204 (213)
T ss_pred hhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEE
Confidence 6899999996521 3799999999999999999 33444444324 467777 2444 78
Q ss_pred EEEeCCe
Q 024032 236 KALKAGD 242 (273)
Q Consensus 236 ~vl~~G~ 242 (273)
++|.+|+
T Consensus 205 ~~l~~g~ 211 (213)
T cd03277 205 LCVYNGP 211 (213)
T ss_pred EEEecCc
Confidence 8888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-16 Score=137.55 Aligned_cols=136 Identities=13% Similarity=0.077 Sum_probs=84.7
Q ss_pred eeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC-cc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc
Q 024032 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV-LS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (273)
Q Consensus 89 ~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl-~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~ 166 (273)
-..++++.+|++++|+||||||||||+++|++. +. ..|.... . .+..++++.|.... +...++.
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~-----~~~~i~~~dqi~~~-------~~~~d~i- 85 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-A-----ESASIPLVDRIFTR-------IGAEDSI- 85 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-c-----cccccCCcCEEEEE-------ecCcccc-
Confidence 344667778999999999999999999999954 32 4444321 1 11122222211111 1111111
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHh---cCCCCEEEEcCcCCCCCHHH---H----HHHHHhcCCcEEEEc-------
Q 024032 167 FNYNRVHEGLEELSSWMSEGVHHNQRC---LRSDDCALMKNDAEIDDLKS---S----PKYVLRRVDFAMVVS------- 229 (273)
Q Consensus 167 ~~~~~~~~~l~~~~~~LSgGqkq~~r~---l~~p~iLlLDEPts~LD~~~---~----l~~l~~~~g~tiiiv------- 229 (273)
..-.+.++.+++|...+ +.+|+++|||||++|+|+.. . ++.+.+. +.++|++
T Consensus 86 ----------~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~-~~~vi~~tH~~~~~ 154 (202)
T cd03243 86 ----------SDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEK-GCRTLFATHFHELA 154 (202)
T ss_pred ----------cCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEECChHHHH
Confidence 11113456677664433 67999999999999999972 1 2334443 7888888
Q ss_pred eeCCEEEEEeCCeEeeecCh
Q 024032 230 NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 230 ~~ad~i~vl~~G~i~~~g~~ 249 (273)
..++++..++.|++...++.
T Consensus 155 ~~~~~~~~l~~~~~~~~~~~ 174 (202)
T cd03243 155 DLPEQVPGVKNLHMEELITT 174 (202)
T ss_pred HHhhcCCCeEEEEEEEEecC
Confidence 44677777888888777654
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-16 Score=168.72 Aligned_cols=75 Identities=12% Similarity=0.037 Sum_probs=61.9
Q ss_pred ccCCHHHHHHHHh---cC----CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE--
Q 024032 181 SWMSEGVHHNQRC---LR----SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL-- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r~---l~----~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl-- 238 (273)
.+|||||.||.++ +. .+.++||||||.||++. +.+.+|... |.|||+| +.||+|+=|
T Consensus 1698 ~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~-g~tvivieH~~~~i~~aD~iidlgp 1776 (1809)
T PRK00635 1698 SSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSL-GHSVIYIDHDPALLKQADYLIEMGP 1776 (1809)
T ss_pred CccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhCCEEEEcCC
Confidence 6899999998854 43 35799999999999999 335567655 9999999 458999888
Q ss_pred ----eCCeEeeecChhhhccCh
Q 024032 239 ----KAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 239 ----~~G~i~~~g~~~~l~~~~ 256 (273)
+.|+|++.|+|+++.+.+
T Consensus 1777 ~gG~~GG~iva~Gtp~~i~~~~ 1798 (1809)
T PRK00635 1777 GSGKTGGKILFSGPPKDISASK 1798 (1809)
T ss_pred CcccCCCEEEEEeCHHHHhhCC
Confidence 668999999999998654
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=129.90 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=75.6
Q ss_pred eeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Cc-----cEEEECCee-CCC--CCccEEEEeccchhhhccCCcccc
Q 024032 91 GGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS-----GLVLFAQTS-SGN--SSHTITMYMEEHNVMRSLQSGFCV 161 (273)
Q Consensus 91 is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~-----G~I~i~g~~-i~~--~~~~i~~v~q~~~~~~~~~~~~tv 161 (273)
..+...++.+.+|+||||||||+++.+|.=..- .+ +.-.+...+ ++. ....+...+.+... +++..
T Consensus 15 ~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~---~~~~~-- 89 (178)
T cd03239 15 ETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYF---LVLQG-- 89 (178)
T ss_pred CEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceE---EecCC--
Confidence 333333334999999999999999999864332 11 111100011 111 11123333332210 11111
Q ss_pred cccccCCHHHHHHHHHHhcccCCHHHHHHH---Hhc-----CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEE
Q 024032 162 YDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RCL-----RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMV 227 (273)
Q Consensus 162 ~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~l-----~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tii 227 (273)
+..++ ||+||+|+. +++ .+|+++|||||+++||+. +.+.++.++ |.|+|
T Consensus 90 ------~~~~~----------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiI 152 (178)
T cd03239 90 ------KVEQI----------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFI 152 (178)
T ss_pred ------cCccc----------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Confidence 11111 999999976 322 689999999999999999 334555544 78888
Q ss_pred Ec-------eeCCEEEEEeC
Q 024032 228 VS-------NIAEIYKALKA 240 (273)
Q Consensus 228 iv-------~~ad~i~vl~~ 240 (273)
++ ..+|+++.+..
T Consensus 153 iiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 153 VITLKKEMFENADKLIGVLF 172 (178)
T ss_pred EEECCHHHHhhCCeEEEEEE
Confidence 88 56799988864
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-15 Score=149.49 Aligned_cols=75 Identities=9% Similarity=0.111 Sum_probs=60.0
Q ss_pred ccCCHHHHHHHHh---c----CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE--
Q 024032 181 SWMSEGVHHNQRC---L----RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL-- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r~---l----~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl-- 238 (273)
.+|||||.||..+ + ...-++||||||+||=+. +.+.+|..+ |.|||+| +.||+|+=|
T Consensus 821 tTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~-GnTViVIEHNLdVIk~AD~IIDLGP 899 (935)
T COG0178 821 TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK-GNTVIVIEHNLDVIKTADWIIDLGP 899 (935)
T ss_pred ccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecccceEeecCEEEEcCC
Confidence 6899999998744 3 344799999999999655 334566665 9999999 568988877
Q ss_pred ----eCCeEeeecChhhhccCh
Q 024032 239 ----KAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 239 ----~~G~i~~~g~~~~l~~~~ 256 (273)
+.|+|++.|+|+++.+.+
T Consensus 900 eGG~~GG~iva~GTPeeva~~~ 921 (935)
T COG0178 900 EGGDGGGEIVASGTPEEVAKVK 921 (935)
T ss_pred CCCCCCceEEEecCHHHHHhCc
Confidence 679999999999998643
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-16 Score=139.28 Aligned_cols=134 Identities=10% Similarity=0.054 Sum_probs=89.0
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
.++++|+.+++++++|.||||+|||||++.++-..- ..|. +++.+...++ ....+.+..
T Consensus 20 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~----------------~vpa~~~~~~---~~~~il~~~ 80 (222)
T cd03285 20 PNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGC----------------FVPCDSADIP---IVDCILARV 80 (222)
T ss_pred EeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCC----------------CcCcccEEEe---ccceeEeee
Confidence 999999999999999999999999999999873211 2221 2222221110 000111111
Q ss_pred cCCHHHHHHHHHHhcccCCHHHHHHHH---h---cCCCCEEEEcCc---CCCCCHHHH----HHHHHhcCCcEEEEc---
Q 024032 166 GFNYNRVHEGLEELSSWMSEGVHHNQR---C---LRSDDCALMKND---AEIDDLKSS----PKYVLRRVDFAMVVS--- 229 (273)
Q Consensus 166 ~~~~~~~~~~l~~~~~~LSgGqkq~~r---~---l~~p~iLlLDEP---ts~LD~~~~----l~~l~~~~g~tiiiv--- 229 (273)
+... .....+|.|++++.+ + +.+|+++||||| |+++|+... ++.+.++.|.++|++
T Consensus 81 ~l~d--------~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~ 152 (222)
T cd03285 81 GASD--------SQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHF 152 (222)
T ss_pred cccc--------chhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEech
Confidence 1111 113568888887542 2 589999999999 899999833 355554347888888
Q ss_pred ----eeCCEEEEEeCCeEeeecC
Q 024032 230 ----NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 230 ----~~ad~i~vl~~G~i~~~g~ 248 (273)
++||++..+++|++...+.
T Consensus 153 ~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 153 HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHhhcCCCeEEEEEEEEEe
Confidence 5578999999999876553
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.9e-16 Score=139.80 Aligned_cols=129 Identities=15% Similarity=0.158 Sum_probs=90.8
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------CCccEEEEeccchhhhccCCcccccccccCCHHH
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNR 171 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~ 171 (273)
.-++|+||||||||||+++|+|++. .+|+|.++|+++.. ....+++++|. ... ...+|.+|-. +.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~-~~~----~r~~v~~~~~--k~- 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQH-DVG----IRTDVLDGCP--KA- 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccc-ccc----ccccccccch--HH-
Confidence 5789999999999999999999999 99999999998852 22234445553 322 2335665421 11
Q ss_pred HHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHHHHHHHHHhcCCcEEEEc---------------------e
Q 024032 172 VHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS---------------------N 230 (273)
Q Consensus 172 ~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~~~l~~l~~~~g~tiiiv---------------------~ 230 (273)
.|+.+..++ .+|+++|+|||++.-+....++.+. + |.++|++ .
T Consensus 184 -------------~~~~~~i~~-~~P~villDE~~~~e~~~~l~~~~~-~-G~~vI~ttH~~~~~~~~~r~~~~~l~~~~ 247 (270)
T TIGR02858 184 -------------EGMMMLIRS-MSPDVIVVDEIGREEDVEALLEALH-A-GVSIIATAHGRDVEDLYKRPVFKELIENE 247 (270)
T ss_pred -------------HHHHHHHHh-CCCCEEEEeCCCcHHHHHHHHHHHh-C-CCEEEEEechhHHHHHHhChHHHHHHhcC
Confidence 133333333 5999999999987655445555554 3 8999988 2
Q ss_pred eCCEEEEEeCCeEeeecChhhhc
Q 024032 231 IAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 231 ~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
.++|+++|++|+ ..|++++++
T Consensus 248 ~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 248 AFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred ceEEEEEEecCC--CCCceeecc
Confidence 358999999887 677777765
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-15 Score=144.45 Aligned_cols=162 Identities=16% Similarity=0.153 Sum_probs=100.2
Q ss_pred EEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEE-----------ECCeeCCC-
Q 024032 71 HKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL-----------FAQTSSGN- 137 (273)
Q Consensus 71 ~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~-----------i~g~~i~~- 137 (273)
++..+|..++.. |..+- ..++|.++||+||||-||||.+|+|+|.+. .=|.-. |.|..+..
T Consensus 79 e~vHRYg~NgFk-----L~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~Y 152 (591)
T COG1245 79 EVVHRYGVNGFK-----LYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNY 152 (591)
T ss_pred cceeeccCCceE-----EecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHH
Confidence 456677554422 22222 357899999999999999999999999876 655431 11211110
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccC-C-HHHHHHHHHHhc---------ccCCHHHHHHHHh----cCC
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-N-YNRVHEGLEELS---------SWMSEGVHHNQRC----LRS 196 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-~-~~~~~~~l~~~~---------~~LSgGqkq~~r~----l~~ 196 (273)
-.-++..-+|-...+|.. ...+|.|-... + .....+.++.++ .+|||||-||.++ +++
T Consensus 153 F~~l~~g~~r~v~K~QYVd~iPk~-~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rd 231 (591)
T COG1245 153 FKKLYEGELRAVHKPQYVDLIPKV-VKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRD 231 (591)
T ss_pred HHHHHcCCcceecchHHHHHHHHH-hcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhcc
Confidence 111223333433333332 22344443111 0 012233333333 8899999998732 799
Q ss_pred CCEEEEcCcCCCCCHHHH------HHHHHhcCCcEEEEce--------eCCEEEEEeC
Q 024032 197 DDCALMKNDAEIDDLKSS------PKYVLRRVDFAMVVSN--------IAEIYKALKA 240 (273)
Q Consensus 197 p~iLlLDEPts~LD~~~~------l~~l~~~~g~tiiiv~--------~ad~i~vl~~ 240 (273)
++++++|||+|-||..+. ++++.+. +++|++|. ++|-|.++-.
T Consensus 232 ADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 232 ADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred CCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechHHHHHHhhheeEEEec
Confidence 999999999999999944 5677765 89999993 3577777743
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-15 Score=139.66 Aligned_cols=148 Identities=16% Similarity=0.197 Sum_probs=101.7
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc--------c-CccEEEECCeeCCCCCccEEEEeccchhhhccCC
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL--------S-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQS 157 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~--------~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~ 157 (273)
+|+|+||++++|++++|+|+|||||||++++|.|.. + ++|.|.+--..+.. +++.+... .+.
T Consensus 398 vlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a------~iPge~Ep---~f~ 468 (593)
T COG2401 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA------LIPGEYEP---EFG 468 (593)
T ss_pred eeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhh------ccCccccc---ccC
Confidence 499999999999999999999999999999999964 3 46666654332221 11111110 011
Q ss_pred cccccccccC---CHHHHHHHHHHhc-----------ccCCHHHHHHHHh----cCCCCEEEEcCcCCCCCHHH------
Q 024032 158 GFCVYDSRGF---NYNRVHEGLEELS-----------SWMSEGVHHNQRC----LRSDDCALMKNDAEIDDLKS------ 213 (273)
Q Consensus 158 ~~tv~en~~~---~~~~~~~~l~~~~-----------~~LSgGqkq~~r~----l~~p~iLlLDEPts~LD~~~------ 213 (273)
.-|+.+.... +.....+.+++++ +.||-|||.|.++ ...|.+++.||-.|.||+..
T Consensus 469 ~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVAr 548 (593)
T COG2401 469 EVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVAR 548 (593)
T ss_pred chhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHH
Confidence 2233333111 2233556666666 7899999987633 57899999999999999993
Q ss_pred HHHHHHhcCCcEEEEc--------ee-CCEEEEEeCCeE
Q 024032 214 SPKYVLRRVDFAMVVS--------NI-AEIYKALKAGDS 243 (273)
Q Consensus 214 ~l~~l~~~~g~tiiiv--------~~-ad~i~vl~~G~i 243 (273)
.+.+++++.|.|++++ .+ .|.++.+.=|.+
T Consensus 549 kiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v 587 (593)
T COG2401 549 KISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKV 587 (593)
T ss_pred HHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccc
Confidence 3567888889999988 22 477777665554
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.1e-15 Score=124.69 Aligned_cols=119 Identities=13% Similarity=0.091 Sum_probs=75.7
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccCCHH
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYN 170 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~ 170 (273)
++.+.++.++.|+|||||||||+++.+....- .+|.+... ... +.++..+.... .+ +
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~-----~~g~~~~~~~~----~~---i--------- 72 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV-----KAGCIVAAVSA----EL---I--------- 72 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc-----cCCCcceeeEE----EE---e---------
Confidence 44555667999999999999999999876655 55555431 111 11111111000 00 0
Q ss_pred HHHHHHHHhcccCCHHHHHHHHh---c-----CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------
Q 024032 171 RVHEGLEELSSWMSEGVHHNQRC---L-----RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS------- 229 (273)
Q Consensus 171 ~~~~~l~~~~~~LSgGqkq~~r~---l-----~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv------- 229 (273)
.....||+||+|+.++ + .+|+++|||||++++|+. ..+.++..+ +.++|++
T Consensus 73 -------~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~ 144 (162)
T cd03227 73 -------FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELA 144 (162)
T ss_pred -------hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHH
Confidence 0013399999987632 2 289999999999999999 234444444 7788888
Q ss_pred eeCCEEEEEeC
Q 024032 230 NIAEIYKALKA 240 (273)
Q Consensus 230 ~~ad~i~vl~~ 240 (273)
..+|+++.|..
T Consensus 145 ~~~d~~~~l~~ 155 (162)
T cd03227 145 ELADKLIHIKK 155 (162)
T ss_pred HhhhhEEEEEE
Confidence 45688888853
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-15 Score=131.62 Aligned_cols=117 Identities=9% Similarity=0.063 Sum_probs=76.9
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
.++++|++++|++++|+||||+||||++++++++.- .-|. +++-. ...+++.++.
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~----------------~vpa~-------~~~l~~~d~I 75 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGC----------------FVPAE-------YATLPIFNRL 75 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCC----------------Ccchh-------hcCccChhhe
Confidence 999999999999999999999999999999998642 2221 01111 1111223221
Q ss_pred cCCHHHHHHHHHHhcccCCHHHHHHHHh---cCCCCEEEEcCcCCCCCHH-------HHHHHHHhcCCcEEEEc
Q 024032 166 GFNYNRVHEGLEELSSWMSEGVHHNQRC---LRSDDCALMKNDAEIDDLK-------SSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 166 ~~~~~~~~~~l~~~~~~LSgGqkq~~r~---l~~p~iLlLDEPts~LD~~-------~~l~~l~~~~g~tiiiv 229 (273)
-.... ..+-++.-.+.+|.|++|...+ +.+|+++|||||++|+|+. ..++.+.+. +.++|++
T Consensus 76 ~~~~~-~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~-~~~~i~~ 147 (204)
T cd03282 76 LSRLS-NDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKK-ESTVFFA 147 (204)
T ss_pred eEecC-CccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 00000 0001122225688999875533 6789999999999999997 234556555 8898888
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-14 Score=130.76 Aligned_cols=59 Identities=12% Similarity=-0.035 Sum_probs=45.7
Q ss_pred cCCHHHHHHHHh-----c-C--CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeC
Q 024032 182 WMSEGVHHNQRC-----L-R--SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKA 240 (273)
Q Consensus 182 ~LSgGqkq~~r~-----l-~--~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~ 240 (273)
.|||||+||..+ + . +|+++||||||++||+. +.++++.+ +.|+|++ ..||++++|.+
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~~~~~~d~~~~l~~ 247 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQVAAMADNHFLVEK 247 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHHHHHhcCcEEEEEE
Confidence 599999997622 2 2 99999999999999999 23444443 6788888 56899999987
Q ss_pred Ce
Q 024032 241 GD 242 (273)
Q Consensus 241 G~ 242 (273)
|.
T Consensus 248 ~~ 249 (276)
T cd03241 248 EV 249 (276)
T ss_pred ec
Confidence 64
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-14 Score=126.30 Aligned_cols=142 Identities=12% Similarity=0.046 Sum_probs=85.1
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
.++++|+.++ ++++|+|||||||||++|++++..- ..|. .+......++++.+ + +..+++.|+.
T Consensus 21 ~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~------~vp~~~~~i~~~~~---i----~~~~~~~~~l 86 (216)
T cd03284 21 PNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGS------FVPASKAEIGVVDR---I----FTRIGASDDL 86 (216)
T ss_pred eeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCC------eeccccceecceee---E----eccCCchhhh
Confidence 8999999887 9999999999999999999987532 2232 22222234444432 1 2333555543
Q ss_pred cCCHHHH-HHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCc---CCCCCHHH----HHHHHHhcCCcEEEEc-------e
Q 024032 166 GFNYNRV-HEGLEELSSWMSEGVHHNQRCLRSDDCALMKND---AEIDDLKS----SPKYVLRRVDFAMVVS-------N 230 (273)
Q Consensus 166 ~~~~~~~-~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEP---ts~LD~~~----~l~~l~~~~g~tiiiv-------~ 230 (273)
....... .+..+ + .+..+.+.+|+++||||| |+++|... .++.+.+..+.++|++ .
T Consensus 87 s~g~s~f~~e~~~-l--------~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~ 157 (216)
T cd03284 87 AGGRSTFMVEMVE-T--------ANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTE 157 (216)
T ss_pred ccCcchHHHHHHH-H--------HHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHH
Confidence 2211000 00000 0 000112579999999999 88999863 3444544337788888 3
Q ss_pred eCCEEEEEeCCeEeeecChhhh
Q 024032 231 IAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 231 ~ad~i~vl~~G~i~~~g~~~~l 252 (273)
++|++..+++|++...++.+++
T Consensus 158 l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 158 LEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HhhcCCCeEEEEEEEEeeCCeE
Confidence 4566666677777665555444
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.49 E-value=5e-13 Score=121.03 Aligned_cols=63 Identities=13% Similarity=0.009 Sum_probs=42.9
Q ss_pred ccCCHHHHHHH---Hh----------cCCCCEEEEcCcCCCCCHHH--HHHHHHhcCCcEEEEc-------eeC---CEE
Q 024032 181 SWMSEGVHHNQ---RC----------LRSDDCALMKNDAEIDDLKS--SPKYVLRRVDFAMVVS-------NIA---EIY 235 (273)
Q Consensus 181 ~~LSgGqkq~~---r~----------l~~p~iLlLDEPts~LD~~~--~l~~l~~~~g~tiiiv-------~~a---d~i 235 (273)
..+|+||+|+. ++ ..+|+++||||||++||+.. .+....++.+.+++.+ ..| +++
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~~~~~~~~~~~i 261 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLADFDALWLRRAQI 261 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchhccchhccCccE
Confidence 34899999865 22 26999999999999999993 3333333334455554 234 578
Q ss_pred EEEeCCeE
Q 024032 236 KALKAGDS 243 (273)
Q Consensus 236 ~vl~~G~i 243 (273)
+.+++|++
T Consensus 262 ~~l~~g~i 269 (270)
T cd03242 262 FRVDAGTL 269 (270)
T ss_pred EEEeCcEE
Confidence 88888875
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-13 Score=106.83 Aligned_cols=68 Identities=15% Similarity=0.048 Sum_probs=53.3
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC----CCccEEEEeccchhhhccCCccccc
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN----SSHTITMYMEEHNVMRSLQSGFCVY 162 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~----~~~~i~~v~q~~~~~~~~~~~~tv~ 162 (273)
+|++++|++++|++++|+||||||||||++++. +|.+.++|.++.. ...++..+.|+. . +..|++
T Consensus 4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----~G~i~~~g~di~~~~~~~~~~~~~~~~q~-l-----f~~ti~ 72 (107)
T cd00820 4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI-----KRKHRLVGDDNVEIREDSKDELIGRNPEL-G-----LEIRLR 72 (107)
T ss_pred EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----CCeEEEeeEeHHHhhhhhcCCEEEEechh-c-----chhhHH
Confidence 399999999999999999999999999999987 7899999998853 223334444444 3 234788
Q ss_pred ccc
Q 024032 163 DSR 165 (273)
Q Consensus 163 en~ 165 (273)
+|.
T Consensus 73 ~Ni 75 (107)
T cd00820 73 LNI 75 (107)
T ss_pred hhc
Confidence 873
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=132.73 Aligned_cols=117 Identities=13% Similarity=0.161 Sum_probs=75.3
Q ss_pred eeeeEEcCC-cEEEEEcCCCChHHHHHHHHhhC-cc-CccE-EEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 90 KGGMDIPPV-ITILLMGFSGSGKSSLVNLMYSV-LS-RSGL-VLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 90 ~is~~i~~G-e~~aivGpnGsGKSTLl~ll~gl-~~-~~G~-I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
.+++++..+ ++++|.||||+|||||||+|+|. +. ..|. |... .. ..++++.|...
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~-~~-----~~~~~~d~i~~--------------- 371 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPAN-EH-----SEIPYFEEIFA--------------- 371 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCC-cc-----ccccchhheee---------------
Confidence 368888887 89999999999999999999997 33 5552 2111 00 11122111110
Q ss_pred cCCHHHHHHHHHHhcccCCHHHHHHHHh---cCCCCEEEEcCcCCCCCHHH-------HHHHHHhcCCcEEEEcee
Q 024032 166 GFNYNRVHEGLEELSSWMSEGVHHNQRC---LRSDDCALMKNDAEIDDLKS-------SPKYVLRRVDFAMVVSNI 231 (273)
Q Consensus 166 ~~~~~~~~~~l~~~~~~LSgGqkq~~r~---l~~p~iLlLDEPts~LD~~~-------~l~~l~~~~g~tiiiv~~ 231 (273)
.+..+ +.+..-.++||+|+++..++ +.+|.++|||||++|+||.+ .++.+.+. |.++|+++|
T Consensus 372 ~i~~~---~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~-g~~viitTH 443 (771)
T TIGR01069 372 DIGDE---QSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQ-NAQVLITTH 443 (771)
T ss_pred ecChH---hHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEECC
Confidence 01111 12222246789999886644 56899999999999999992 23445443 888888833
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.9e-13 Score=125.79 Aligned_cols=174 Identities=15% Similarity=0.123 Sum_probs=103.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC-c--cCccEEEECCeeCCC-C---
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV-L--SRSGLVLFAQTSSGN-S--- 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl-~--~~~G~I~i~g~~i~~-~--- 138 (273)
.|.++|.+.+- .++.. +.+.|+.|-.|..+|+|||||-||||||+.|+.- + +..=.+++..+.+-. .
T Consensus 264 DIKiEnF~ISA--~Gk~L----FvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~A 337 (807)
T KOG0066|consen 264 DIKIENFDISA--QGKLL----FVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSA 337 (807)
T ss_pred cceeeeeeeec--cccee----eeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHH
Confidence 57777776665 45666 8899999999999999999999999999999853 2 233344444433210 0
Q ss_pred --------CccEEEEeccchhhhcc-CCccccccc----------ccC--CHHHHHHHHHHhc----------ccCCHHH
Q 024032 139 --------SHTITMYMEEHNVMRSL-QSGFCVYDS----------RGF--NYNRVHEGLEELS----------SWMSEGV 187 (273)
Q Consensus 139 --------~~~i~~v~q~~~~~~~~-~~~~tv~en----------~~~--~~~~~~~~l~~~~----------~~LSgGq 187 (273)
.++..++-....+...+ -...|+.+- .+. ...+++.+|.-++ ..+|||.
T Consensus 338 i~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGW 417 (807)
T KOG0066|consen 338 IDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGW 417 (807)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCce
Confidence 00000000000000000 001112111 011 1223344444444 5699999
Q ss_pred HHHH---Hh-cCCCCEEEEcCcCCCCCHHHH--HHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEee
Q 024032 188 HHNQ---RC-LRSDDCALMKNDAEIDDLKSS--PKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 188 kq~~---r~-l~~p~iLlLDEPts~LD~~~~--l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~ 245 (273)
|-|+ |+ +.+|-+|.|||||+.||.... +..+.+--.+|.+|| ..|..|+.+++-++-.
T Consensus 418 RMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhy 489 (807)
T KOG0066|consen 418 RMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHY 489 (807)
T ss_pred eeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhh
Confidence 7665 44 689999999999999999833 222222113588888 5678888998877754
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.4e-12 Score=109.87 Aligned_cols=117 Identities=13% Similarity=0.104 Sum_probs=71.2
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC-cc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV-LS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl-~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
.++++|++.+|++++|.||||+||||+++++++. +. ..|...... .. .+.++.+= +..+...|+.
T Consensus 21 ~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~~-----~~~~~~~i-------~~~~~~~d~~ 87 (222)
T cd03287 21 PNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-SA-----TLSIFDSV-------LTRMGASDSI 87 (222)
T ss_pred EEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-ce-----EEeccceE-------EEEecCcccc
Confidence 8999999999999999999999999999999994 44 788765432 11 12221111 1111112211
Q ss_pred cCC----HHHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHH-------HHHHHHHhcCCcEEEEc
Q 024032 166 GFN----YNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK-------SSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 166 ~~~----~~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~-------~~l~~l~~~~g~tiiiv 229 (273)
... ..++.+..+ ..+.+.++.++|||||.+|.|+. ..++.+.+..+.++|++
T Consensus 88 ~~~~StF~~e~~~~~~------------il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~ 150 (222)
T cd03287 88 QHGMSTFMVELSETSH------------ILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFV 150 (222)
T ss_pred ccccchHHHHHHHHHH------------HHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEE
Confidence 100 111111111 11225689999999998888765 23455554436788888
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-12 Score=111.13 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=62.1
Q ss_pred EEEEEcCCCChHHHHHHHHhh-Ccc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccCCHHHHHHHHH
Q 024032 100 TILLMGFSGSGKSSLVNLMYS-VLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLE 177 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g-l~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~ 177 (273)
+++|.||||+||||++|.++- .+- ..|....... -.++++-+-.. .+...++ +.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~------~~~~~~d~il~-------~~~~~d~-----------~~ 56 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAES------AELPVFDRIFT-------RIGASDS-----------LA 56 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehh------eEecccceEEE-------EeCCCCc-----------hh
Confidence 368999999999999999983 333 4554322110 11111111000 0011111 11
Q ss_pred HhcccCCHHHHHHHHh---cCCCCEEEEcCcCCCCCHHH-------HHHHHHhcCCcEEEEc
Q 024032 178 ELSSWMSEGVHHNQRC---LRSDDCALMKNDAEIDDLKS-------SPKYVLRRVDFAMVVS 229 (273)
Q Consensus 178 ~~~~~LSgGqkq~~r~---l~~p~iLlLDEPts~LD~~~-------~l~~l~~~~g~tiiiv 229 (273)
.-.+.||+|++|..++ +.+|+++|+|||++|+|+.. .++.+.++.+.++|++
T Consensus 57 ~~~s~fs~~~~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~ 118 (185)
T smart00534 57 QGLSTFMVEMKETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFA 118 (185)
T ss_pred ccccHHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 2225688888775544 45899999999999999982 1334443237788887
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=108.70 Aligned_cols=121 Identities=19% Similarity=0.138 Sum_probs=66.2
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC--ccCccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV--LSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl--~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
-+|++++=..+.+++|.||||+|||||||.++.. +...|...... .-.++++.|....+ ....++.++.
T Consensus 19 pnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~------~~~~~~~d~i~~~l---~~~~si~~~~ 89 (213)
T cd03281 19 PNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPAD------SATIGLVDKIFTRM---SSRESVSSGQ 89 (213)
T ss_pred cceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcC------CcEEeeeeeeeeee---CCccChhhcc
Confidence 4445543222379999999999999999999853 23566654422 12345554543321 1112333221
Q ss_pred cCCHHHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHH-------HHHHHHHhc-C-CcEEEEc
Q 024032 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK-------SSPKYVLRR-V-DFAMVVS 229 (273)
Q Consensus 166 ~~~~~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~-------~~l~~l~~~-~-g~tiiiv 229 (273)
.. ....++++. .....+.+|+++|||||++|+|+. ..++.+.++ . +.++|++
T Consensus 90 S~----f~~el~~l~--------~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~ 150 (213)
T cd03281 90 SA----FMIDLYQVS--------KALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVS 150 (213)
T ss_pred ch----HHHHHHHHH--------HHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 10 001111110 011226789999999999999986 234555543 1 2367777
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-11 Score=116.09 Aligned_cols=140 Identities=14% Similarity=0.153 Sum_probs=92.4
Q ss_pred eeeeeeEEcCCc-----EEEEEcCCCChHHHHHHHHhhCcc-C-ccEEEECCeeCCCCCccEEEEeccchhhhccCCccc
Q 024032 88 IQKGGMDIPPVI-----TILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFC 160 (273)
Q Consensus 88 L~~is~~i~~Ge-----~~aivGpnGsGKSTLl~ll~gl~~-~-~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~t 160 (273)
+.+..+.|+.|+ ++..+|.||.||||++++++|.++ + .|+|-... ++|.+|.... .+..|
T Consensus 352 ~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~ln---------VSykpqkisp----K~~~t 418 (592)
T KOG0063|consen 352 VGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLN---------VSYKPQKISP----KREGT 418 (592)
T ss_pred eeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccc---------eeccccccCc----cccch
Confidence 778888999886 889999999999999999999887 5 44554332 2333332221 11223
Q ss_pred cccc-----------ccC-----CHHHHHHHHHHhcccCCHHHHHHHHh---c-CCCCEEEEcCcCCCCCHHHHH-----
Q 024032 161 VYDS-----------RGF-----NYNRVHEGLEELSSWMSEGVHHNQRC---L-RSDDCALMKNDAEIDDLKSSP----- 215 (273)
Q Consensus 161 v~en-----------~~~-----~~~~~~~~l~~~~~~LSgGqkq~~r~---l-~~p~iLlLDEPts~LD~~~~l----- 215 (273)
|++- ..+ ..-.++.++++-...||||+.||.+. + +.+++.+.|||.+-||..+.+
T Consensus 419 vR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Askv 498 (592)
T KOG0063|consen 419 VRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKV 498 (592)
T ss_pred HHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHH
Confidence 3221 111 11223444444447899999998754 3 567999999999999999554
Q ss_pred -HHHHhcCCcEEEEc--------eeCCEEEEEeC
Q 024032 216 -KYVLRRVDFAMVVS--------NIAEIYKALKA 240 (273)
Q Consensus 216 -~~l~~~~g~tiiiv--------~~ad~i~vl~~ 240 (273)
+++.-...+|-++| -+|||+++.+.
T Consensus 499 ikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 499 IKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred HHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 33221226777777 45799998864
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.6e-11 Score=104.96 Aligned_cols=147 Identities=14% Similarity=0.214 Sum_probs=72.9
Q ss_pred eeeeeEEcCCcEEEEEcCCCChHHHHHHHHh-hCccC---c-------cEEEECCeeCCCCCccEEEEeccchhhhcc-C
Q 024032 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMY-SVLSR---S-------GLVLFAQTSSGNSSHTITMYMEEHNVMRSL-Q 156 (273)
Q Consensus 89 ~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~-gl~~~---~-------G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~-~ 156 (273)
+...+.+.+| +++|+|||||||||++.+|. -+-.. + .-|...+..-......+...+++....... .
T Consensus 16 ~~~~~~~~~~-~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSPG-LNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTSS-EEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCCC-CEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 4556666654 99999999999999999993 33211 0 111110000000111233333322210000 0
Q ss_pred Ccccc------------c-ccccCCHHHHHHHHHHhc---ccCCHHHHHHHHh--------cCCCCEEEEcCcCCCCCHH
Q 024032 157 SGFCV------------Y-DSRGFNYNRVHEGLEELS---SWMSEGVHHNQRC--------LRSDDCALMKNDAEIDDLK 212 (273)
Q Consensus 157 ~~~tv------------~-en~~~~~~~~~~~l~~~~---~~LSgGqkq~~r~--------l~~p~iLlLDEPts~LD~~ 212 (273)
....+ + ++.......+.+.+.... ..||||||....+ ....+++|||||.++||..
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~ 174 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISPEFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQ 174 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTTTGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000 0 112234455556665554 5799999865421 4678999999999999999
Q ss_pred H------HHHHHHhcCCcEEEEc-------eeCCEEEEE
Q 024032 213 S------SPKYVLRRVDFAMVVS-------NIAEIYKAL 238 (273)
Q Consensus 213 ~------~l~~l~~~~g~tiiiv-------~~ad~i~vl 238 (273)
. +++++.+ +.-+|++ ..||+.+.+
T Consensus 175 ~~~~l~~~l~~~~~--~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 175 NRKRLADLLKELSK--QSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp HHHHHHHHHHHHTT--TSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccc--ccccccccccccccccccccccc
Confidence 2 3444432 3556666 456766443
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-11 Score=126.62 Aligned_cols=73 Identities=10% Similarity=0.050 Sum_probs=61.5
Q ss_pred ccCCHHHHHHHHh----cCCC--CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE---
Q 024032 181 SWMSEGVHHNQRC----LRSD--DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL--- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r~----l~~p--~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl--- 238 (273)
.+|||||+||..+ ..+| +++||||||+|||+. +.++++.++ |.|||+| ..||++++|
T Consensus 486 ~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~-G~TVIvVeHd~~~i~~aD~vi~Lgpg 564 (924)
T TIGR00630 486 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDL-GNTVIVVEHDEETIRAADYVIDIGPG 564 (924)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHhhCCEEEEeccc
Confidence 6799999998733 4554 899999999999999 446667655 9999999 458999999
Q ss_pred ---eCCeEeeecChhhhcc
Q 024032 239 ---KAGDSKPLDATKRLFS 254 (273)
Q Consensus 239 ---~~G~i~~~g~~~~l~~ 254 (273)
++|+|+..|+++++..
T Consensus 565 aG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 565 AGIHGGEVVASGTPEEILA 583 (924)
T ss_pred ccCCCCEEeeccCHHHHhc
Confidence 8999999999999864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-11 Score=126.32 Aligned_cols=74 Identities=9% Similarity=0.046 Sum_probs=62.1
Q ss_pred ccCCHHHHHHHHh----cCCC--CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE---
Q 024032 181 SWMSEGVHHNQRC----LRSD--DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL--- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r~----l~~p--~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl--- 238 (273)
.+|||||+||+++ ..+| +++||||||+|||+. +.++++.++ |.|||+| ..||+|++|
T Consensus 488 ~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~-G~TVIvVeH~~~~i~~aD~vi~Lgpg 566 (943)
T PRK00349 488 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDL-GNTLIVVEHDEDTIRAADYIVDIGPG 566 (943)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHhCCEEEEeccc
Confidence 6799999998733 4565 999999999999999 446667654 9999999 448999999
Q ss_pred ---eCCeEeeecChhhhccC
Q 024032 239 ---KAGDSKPLDATKRLFSA 255 (273)
Q Consensus 239 ---~~G~i~~~g~~~~l~~~ 255 (273)
++|+++..|+++++...
T Consensus 567 aG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 567 AGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred cCCCCCEEeeccCHHHHhcC
Confidence 99999999999998654
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.7e-11 Score=113.52 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=43.5
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
+++++ |.+.+|++++|+|+||+|||||+++|+|+.+ +.|.|.+.|+.
T Consensus 148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Ger 195 (438)
T PRK07721 148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGER 195 (438)
T ss_pred hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecC
Confidence 39999 9999999999999999999999999999999 99999986554
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.4e-10 Score=106.78 Aligned_cols=34 Identities=24% Similarity=0.514 Sum_probs=30.4
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
++++++++.+| +.+|+||||||||||+.+|..+.
T Consensus 14 ~~~~~l~~~~~-~~~i~G~NgsGKT~lleai~~l~ 47 (361)
T PRK00064 14 YEELDLELSPG-VNVLVGENGQGKTNLLEAIYLLA 47 (361)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHHhC
Confidence 77888999888 99999999999999999998644
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.4e-10 Score=98.44 Aligned_cols=121 Identities=13% Similarity=0.133 Sum_probs=68.7
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
-++++|+.++|++++|.||||+||||+++.+++..- ..|.- +.....++..+ ..+ +..+...|+.
T Consensus 20 ~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~------vpa~~~~i~~~---~~i----~~~~~~~d~~ 86 (218)
T cd03286 20 PNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD------VPAKSMRLSLV---DRI----FTRIGARDDI 86 (218)
T ss_pred EeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCc------cCccccEeccc---cEE----EEecCccccc
Confidence 899999999999999999999999999999998643 33321 11101111111 011 1111222221
Q ss_pred cCCHHHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHHH-------HHHHHHhcCCcEEEEc
Q 024032 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKS-------SPKYVLRRVDFAMVVS 229 (273)
Q Consensus 166 ~~~~~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~~-------~l~~l~~~~g~tiiiv 229 (273)
.........-+.++ +.-.+.+.+|.++|||||++|+++.+ .++.+.+..+.+++++
T Consensus 87 ~~~~StF~~e~~~~--------~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~ 149 (218)
T cd03286 87 MKGESTFMVELSET--------ANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFS 149 (218)
T ss_pred ccCcchHHHHHHHH--------HHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 11100000000100 00112257899999999999999982 2455554337788888
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.3e-11 Score=114.62 Aligned_cols=49 Identities=24% Similarity=0.292 Sum_probs=44.3
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc-EEEECCeeCCC
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVLFAQTSSGN 137 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G-~I~i~g~~i~~ 137 (273)
+|++|||++++||+++|+|||||||||||+ +|+.. ++| +|.++|.++..
T Consensus 21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFS 71 (504)
T ss_pred HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCC
Confidence 499999999999999999999999999999 67766 666 79999998864
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=97.36 Aligned_cols=148 Identities=11% Similarity=0.093 Sum_probs=83.7
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc--EEEEC--Ce---eCCCCCccE--EEEecc---chhhhcc--CC
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG--LVLFA--QT---SSGNSSHTI--TMYMEE---HNVMRSL--QS 157 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G--~I~i~--g~---~i~~~~~~i--~~v~q~---~~~~~~~--~~ 157 (273)
+.+.+|+.++|+||+|+|||||++.|++.+. ..+ .+++. ++ ++.+..+.+ ..+..+ +...... ..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~ 90 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEM 90 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHH
Confidence 5788999999999999999999999999876 422 32321 11 111111111 111111 1110000 00
Q ss_pred ccccccc---cc------C-CHHHHHHHHH----HhcccCCHHH--------HHHH-H--h-cCCCCEEEEcCcCCCCCH
Q 024032 158 GFCVYDS---RG------F-NYNRVHEGLE----ELSSWMSEGV--------HHNQ-R--C-LRSDDCALMKNDAEIDDL 211 (273)
Q Consensus 158 ~~tv~en---~~------~-~~~~~~~~l~----~~~~~LSgGq--------kq~~-r--~-l~~p~iLlLDEPts~LD~ 211 (273)
..+..++ .+ + +-.+..++.+ ..+..+|||+ +|+. + + +++++|.+| ||+.+|.
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~ 168 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDT 168 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecC
Confidence 0011110 00 0 1112222222 2337789999 8876 3 3 579999999 9999996
Q ss_pred H---H-H-HHHHHhcCCcEEEEc-------eeCCEEEEEeCCeE
Q 024032 212 K---S-S-PKYVLRRVDFAMVVS-------NIAEIYKALKAGDS 243 (273)
Q Consensus 212 ~---~-~-l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i 243 (273)
. . . +..+.. .+.|.|++ .++|.|.||+.|.+
T Consensus 169 ~~~~~~~i~~~~~~-~~~~~ivls~~la~~~~~paI~vl~s~sr 211 (249)
T cd01128 169 GSRMDDVIFEEFKG-TGNMELVLDRRLAERRIFPAIDILKSGTR 211 (249)
T ss_pred CCcccchHHHHHhc-CCCcEEEEchHHhhCCCCCeEEEcCCCCc
Confidence 4 1 2 334443 25666666 66799999999997
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=112.64 Aligned_cols=114 Identities=15% Similarity=0.217 Sum_probs=67.7
Q ss_pred eeeEEc-CCcEEEEEcCCCChHHHHHHHHhhCcc--CccEE-EECCeeCCCCCccEEEEeccchhhhccCCccccccccc
Q 024032 91 GGMDIP-PVITILLMGFSGSGKSSLVNLMYSVLS--RSGLV-LFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (273)
Q Consensus 91 is~~i~-~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I-~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~ 166 (273)
.++.+. .+.++.|.|||++||||+||.++...- ..|.- ... ....++++.+ ++-..+
T Consensus 319 ndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~------~~~~i~~~~~-------------i~~~ig 379 (782)
T PRK00409 319 KDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPAN------EPSEIPVFKE-------------IFADIG 379 (782)
T ss_pred ceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccC------CCccccccce-------------EEEecC
Confidence 345554 456899999999999999999975421 33311 100 0001111100 000001
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHh---cCCCCEEEEcCcCCCCCHHH-------HHHHHHhcCCcEEEEc
Q 024032 167 FNYNRVHEGLEELSSWMSEGVHHNQRC---LRSDDCALMKNDAEIDDLKS-------SPKYVLRRVDFAMVVS 229 (273)
Q Consensus 167 ~~~~~~~~~l~~~~~~LSgGqkq~~r~---l~~p~iLlLDEPts~LD~~~-------~l~~l~~~~g~tiiiv 229 (273)
+.+ .++.-.++||+|++|+.++ +.+|+++|||||++|+||.+ .+..+.+. |.++|++
T Consensus 380 -~~~----si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~-~~~vIit 446 (782)
T PRK00409 380 -DEQ----SIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKR-GAKIIAT 446 (782)
T ss_pred -Ccc----chhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEE
Confidence 011 1222336789999887644 67899999999999999982 23445444 7888888
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-09 Score=95.45 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=31.2
Q ss_pred EEcCCcEEEEEcCCCChHHHH-HHHHhhCcc-CccEEEEC
Q 024032 94 DIPPVITILLMGFSGSGKSSL-VNLMYSVLS-RSGLVLFA 131 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTL-l~ll~gl~~-~~G~I~i~ 131 (273)
.+++|+++.|+|||||||||| ++.+.++.+ ....+++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 478999999999999999999 799998766 44555554
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.8e-10 Score=103.51 Aligned_cols=145 Identities=10% Similarity=0.083 Sum_probs=92.0
Q ss_pred eeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC--C--ccEEEEeccchhhhccCCcccccccc
Q 024032 91 GGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS--S--HTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 91 is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~--~--~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
+++.++.|+.++|+||+|||||||+++|+++++ ..|.+.+.. ..++ . ..+.++.+... ....
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~~~~~~l~~~~~~-----------~~~~ 203 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPHPNYVHLFYSKGG-----------QGLA 203 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCCCCEEEEEecCCC-----------CCcC
Confidence 446788999999999999999999999999999 888888753 2221 1 11211111100 0000
Q ss_pred cCCHHHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHHHHHHHHHhcCCc-EEEEcee-------CCEEEE
Q 024032 166 GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDF-AMVVSNI-------AEIYKA 237 (273)
Q Consensus 166 ~~~~~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~~~l~~l~~~~g~-tiiiv~~-------ad~i~v 237 (273)
..+. .+.+.. .+-.+|+++++|||.+. +....++.+.. |. +++.+-| .+|+..
T Consensus 204 ~~~~---~~~l~~-------------~Lr~~pd~ii~gE~r~~-e~~~~l~a~~~--g~~~~i~T~Ha~~~~~~~~Rl~~ 264 (308)
T TIGR02788 204 KVTP---KDLLQS-------------CLRMRPDRIILGELRGD-EAFDFIRAVNT--GHPGSITTLHAGSPEEAFEQLAL 264 (308)
T ss_pred ccCH---HHHHHH-------------HhcCCCCeEEEeccCCH-HHHHHHHHHhc--CCCeEEEEEeCCCHHHHHHHHHH
Confidence 1111 111111 12469999999999972 33355565553 55 4455533 377888
Q ss_pred EeCCeEeeecChhhhccChhhHHHhCCceEE
Q 024032 238 LKAGDSKPLDATKRLFSAPGLRKCSKISFCI 268 (273)
Q Consensus 238 l~~G~i~~~g~~~~l~~~~~l~~~~~~~~~~ 268 (273)
|..|++...|.+.+.+ .+.+...|+..+.+
T Consensus 265 l~~~~~~~~g~~~~~~-~~~i~~~~d~ii~~ 294 (308)
T TIGR02788 265 MVKSSQAGLGLDFAYI-VKLVREVIDIVVQI 294 (308)
T ss_pred HhhccccccCCCHHHH-HHHHHHhCCEEEEE
Confidence 8889888888888887 46677888765544
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.5e-11 Score=99.03 Aligned_cols=136 Identities=16% Similarity=0.209 Sum_probs=75.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhCccCccEEEECCe---eCCCCCccEEEEeccchhhhccCCcccccccccC-CHHHHHHH
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQT---SSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGF-NYNRVHEG 175 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~---~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-~~~~~~~~ 175 (273)
.++|+|++|||||||++.+++.+...|. .+.|. ++....+..++...+... . ........+. +.. .
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~-~~~g~~~~~~~~~~~~~~~~~~~~~~--~---~~~~l~~~~~~~~~----~ 71 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGY-KVGGFYTEEVREGGKRIGFKIIDLDT--G---EEGILARVGFPSRP----R 71 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEEcHHHHhcCCccceEEEEcCC--C---CeEEccccCCCCCC----c
Confidence 4789999999999999998876543342 22111 111111122222211000 0 0000000000 000 0
Q ss_pred HHHhcccCCHHHHHHH----HhcCCCCEEEEcC--cCCCCCHH--HHHHHHHhcCCcEEEEc-------eeCCEEEEEeC
Q 024032 176 LEELSSWMSEGVHHNQ----RCLRSDDCALMKN--DAEIDDLK--SSPKYVLRRVDFAMVVS-------NIAEIYKALKA 240 (273)
Q Consensus 176 l~~~~~~LSgGqkq~~----r~l~~p~iLlLDE--Pts~LD~~--~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~ 240 (273)
+......+|++++-.. .++.+|+++++|| |+.++|+. +.+..+.+. +.++|++ ..+|+|..+.+
T Consensus 72 ~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~-~~~~i~v~h~~~~~~~~~~i~~~~~ 150 (174)
T PRK13695 72 VGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDS-EKPVIATLHRRSVHPFVQEIKSRPG 150 (174)
T ss_pred eeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhC-CCeEEEEECchhhHHHHHHHhccCC
Confidence 1112245888886543 2367999999999 66677765 556666544 8888888 34689999999
Q ss_pred CeEeee
Q 024032 241 GDSKPL 246 (273)
Q Consensus 241 G~i~~~ 246 (273)
|+|...
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 998764
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.7e-10 Score=97.60 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHH-HHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLV-NLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl-~ll~gl~~ 123 (273)
.++|+|+||||||||+ +.+.|...
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~ 35 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFE 35 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5799999999999999 68888754
|
|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.3e-09 Score=98.27 Aligned_cols=65 Identities=14% Similarity=0.045 Sum_probs=46.0
Q ss_pred ccCCHHHHHHHHh----c---------CCCCEEEEcCcCCCCCHHHH--HHH-HHhcCCcEEEEc-----eeCCEEEEEe
Q 024032 181 SWMSEGVHHNQRC----L---------RSDDCALMKNDAEIDDLKSS--PKY-VLRRVDFAMVVS-----NIAEIYKALK 239 (273)
Q Consensus 181 ~~LSgGqkq~~r~----l---------~~p~iLlLDEPts~LD~~~~--l~~-l~~~~g~tiiiv-----~~ad~i~vl~ 239 (273)
..+|+||+++..+ + .+|+++|||||+++||+... +.+ +... . -++++ ..+++++.+.
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~-~-q~~it~t~~~~~~~~~~~~~ 339 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL-P-QAIVAGTEAPPGAALTLRIE 339 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC-C-cEEEEcCCCCCCCceEEEEe
Confidence 4589999875411 2 68999999999999999832 333 3332 2 34444 6789999999
Q ss_pred CCeEeeec
Q 024032 240 AGDSKPLD 247 (273)
Q Consensus 240 ~G~i~~~g 247 (273)
+|++....
T Consensus 340 ~~~~~~~~ 347 (349)
T PRK14079 340 AGVFTPEA 347 (349)
T ss_pred ccEecCCC
Confidence 99876443
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-08 Score=86.62 Aligned_cols=62 Identities=5% Similarity=0.035 Sum_probs=42.5
Q ss_pred ccCCHHHHHHH---HhcCCCCEEEEcCcCCCCCHHHH------HHHHHhcCCcEEEEceeC--------CEEEEEeCCeE
Q 024032 181 SWMSEGVHHNQ---RCLRSDDCALMKNDAEIDDLKSS------PKYVLRRVDFAMVVSNIA--------EIYKALKAGDS 243 (273)
Q Consensus 181 ~~LSgGqkq~~---r~l~~p~iLlLDEPts~LD~~~~------l~~l~~~~g~tiiiv~~a--------d~i~vl~~G~i 243 (273)
...|.||---. +...+.-+.|||||-++|.|..+ ++.+.+. |.-+||++|. -.|+-++.+.+
T Consensus 128 h~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPiLlAiP~A~I~~~~~~g~ 206 (233)
T COG3910 128 HHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPILLAIPGAEIYEISESGI 206 (233)
T ss_pred hhhccchHHHHHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChhheeCCCcEEEEEecCCc
Confidence 45788884311 33678889999999999999944 3455555 8778888554 45555555543
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-08 Score=97.29 Aligned_cols=81 Identities=12% Similarity=0.095 Sum_probs=65.3
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECC---eeCCC--
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ---TSSGN-- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g---~~i~~-- 137 (273)
.+.++.++++..|..| ..+ ++.++ .+.+|++++|+||||+|||||+++|+++.+ +.|.|.+.| .++..
T Consensus 137 p~~~~r~~v~~~l~TG-i~a----ID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~ 210 (450)
T PRK06002 137 PPAMTRARVETGLRTG-VRV----IDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFL 210 (450)
T ss_pred CCCeEeecceEEcCCC-cEE----eeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHh
Confidence 4578899999999765 344 88885 999999999999999999999999999998 889988854 44431
Q ss_pred -------CCccEEEEeccch
Q 024032 138 -------SSHTITMYMEEHN 150 (273)
Q Consensus 138 -------~~~~i~~v~q~~~ 150 (273)
.++.+++++|...
T Consensus 211 ~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 211 EDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHHHHhhCCeEEEEEcCCC
Confidence 2356888888554
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.2e-09 Score=100.47 Aligned_cols=156 Identities=14% Similarity=0.106 Sum_probs=94.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
.++-+.++..|..| ..+ ++.+ |.+.+|+.++|+|+||+|||||+++|++..+ +.|.|.+.|+...+.+..+..
T Consensus 130 ~~~r~~i~~~l~TG-ira----ID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~ev~e~~~~ 203 (432)
T PRK06793 130 AFEREEITDVFETG-IKS----IDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVKDFIRK 203 (432)
T ss_pred chheechhhccCCC-CEE----Eecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcccHHHHHHH
Confidence 45556666666544 233 7774 9999999999999999999999999999998 889887776653221110000
Q ss_pred EeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh--------cCCCCEEEEcCcCCCCCHHH
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC--------LRSDDCALMKNDAEIDDLKS 213 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~--------l~~p~iLlLDEPts~LD~~~ 213 (273)
..... +..+..+ + ..-..-|.|+|++. ++ ..++-++++|+||...|+..
T Consensus 204 ~l~~~----------------gl~~tvv---v-~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~r 263 (432)
T PRK06793 204 ELGEE----------------GMRKSVV---V-VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARR 263 (432)
T ss_pred Hhhhc----------------ccceeEE---E-EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHH
Confidence 00000 0000000 0 00145677776643 11 25788999999999999985
Q ss_pred HHHHHHhc---CCcEEEEc----eeCCEEEEEeCCeEeeec
Q 024032 214 SPKYVLRR---VDFAMVVS----NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 214 ~l~~l~~~---~g~tiiiv----~~ad~i~vl~~G~i~~~g 247 (273)
.+..+..+ .|.+..+. ++++|....++|.|....
T Consensus 264 eisl~~~e~p~~G~~~~~~s~l~~L~ERag~~~~GSiT~~~ 304 (432)
T PRK06793 264 SVDIAVKELPIGGKTLLMESYMKKLLERSGKTQKGSITGIY 304 (432)
T ss_pred HHHHHhcCCCCCCeeeeeeccchhHHHHhccCCCcceEEEE
Confidence 44333211 15555443 555666666677776543
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.9e-08 Score=95.56 Aligned_cols=94 Identities=12% Similarity=-0.008 Sum_probs=69.8
Q ss_pred chhhhhhhhhhccchh----hhhhhhHHHHHHHhchhhh---ccCCCCceEEEEEEEEeecCCeeeecccee--------
Q 024032 25 SAAKFDECVKLKLDLP----NVSTLTPRLRVLREMERLA---LIAPDGLNELRHKFLSYRSGDFWIPIGGIQ-------- 89 (273)
Q Consensus 25 ~~~~~~~~~~~~~~~~----~~~~~~~r~~~~~~~~~~~---~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~-------- 89 (273)
|+.-...+..-..+.- ++....+|+.++++.++.. .....+.++|+|+++.|+.. +.+ |+
T Consensus 82 s~~~i~~~~lr~gd~v~g~~R~~~~~ER~~~Ll~v~~vn~~~~e~~~~ri~Fe~LTf~YP~e-r~~----Le~~~~~~~~ 156 (415)
T TIGR00767 82 SPSQIRRFNLRTGDTIEGQIRSPKEGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPNE-RLR----LETSTEDLST 156 (415)
T ss_pred CHHHHHhcCCCCCCEEEEEEeccccHhHHHHHhCCCccCCCCccccCCCeEEEEeeecCCCc-cce----eecCccccce
Confidence 4444444444443332 3456788999998876542 22234679999999999753 355 86
Q ss_pred ---eeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 90 ---KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 90 ---~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
|+.+.|.+|+.++|+||+|+|||||++.|+..+.
T Consensus 157 R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 157 RVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred eeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 9999999999999999999999999999998765
|
Members of this family differ in the specificity of RNA binding. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7e-08 Score=97.40 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=61.2
Q ss_pred ccCCHHHHHHHHhcC------CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE---
Q 024032 181 SWMSEGVHHNQRCLR------SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL--- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r~l~------~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl--- 238 (273)
.+|||||.||.|+++ --=+++||||+.||=+. +.++.++.. |.|+|+| ..||+|+=|
T Consensus 480 ~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDl-GNTviVVEHDedti~~AD~iIDiGPg 558 (935)
T COG0178 480 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDL-GNTVIVVEHDEDTIRAADHIIDIGPG 558 (935)
T ss_pred CCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhc-CCeEEEEecCHHHHhhcCEEEeeCCC
Confidence 789999999987732 12489999999999777 335666554 9999999 568999776
Q ss_pred ---eCCeEeeecChhhhccCh
Q 024032 239 ---KAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 239 ---~~G~i~~~g~~~~l~~~~ 256 (273)
+.|+|++.|+++++++++
T Consensus 559 AG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 559 AGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred CCcCCCEEEEccCHHHHHhCC
Confidence 789999999999999876
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.9e-08 Score=86.06 Aligned_cols=46 Identities=22% Similarity=0.347 Sum_probs=40.9
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCe
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~ 133 (273)
..-+.+.+++|+.++|+||||||||||+++|+|+++ +.|.|.+.+.
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~ 61 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDT 61 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCc
Confidence 444567789999999999999999999999999999 8999998764
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-08 Score=85.90 Aligned_cols=102 Identities=18% Similarity=0.215 Sum_probs=55.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc-cCCHHHHHHHHHH
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR-GFNYNRVHEGLEE 178 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~-~~~~~~~~~~l~~ 178 (273)
++||.||||||||||.+.|.+++. .|.+.+.+.+.-. ...... +... . ....+++. .++.+...+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-~~~~~v~~~D~~~--~~~~~~--~~~~----~-~~~~~~~~~~~~~~~~~~~l~~ 70 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-NPKVVIISQDSYY--KDLSHE--ELEE----R-KNNNYDHPDAFDFDLLISHLQD 70 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-CCCeEEEEecccc--cccccc--cHHH----h-ccCCCCCCCcccHHHHHHHHHH
Confidence 579999999999999999999873 3334333332100 000000 0000 0 00011111 1233444455554
Q ss_pred hc---------ccCCHHHHHHHHh-cCCCCEEEEcCcCCCCCH
Q 024032 179 LS---------SWMSEGVHHNQRC-LRSDDCALMKNDAEIDDL 211 (273)
Q Consensus 179 ~~---------~~LSgGqkq~~r~-l~~p~iLlLDEPts~LD~ 211 (273)
+. ..+|.|+++.... +..++++|+|.|+.+.++
T Consensus 71 l~~~~~~~~p~~d~~~~~~~~~~~~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 71 LKNGKSVEIPVYDFKTHSRLKETVTVYPADVIILEGILALYDK 113 (198)
T ss_pred HHCCCCEeccccccccCcccCCceecCCCCEEEEechhhccch
Confidence 43 3456666443222 678999999999998876
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-07 Score=79.17 Aligned_cols=48 Identities=2% Similarity=-0.110 Sum_probs=33.8
Q ss_pred ccCCHHHHH------HH--Hh--cCCCCEEEEcCcCCCCC---HH------HHHHHHHhcCCcEEEEc
Q 024032 181 SWMSEGVHH------NQ--RC--LRSDDCALMKNDAEIDD---LK------SSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 181 ~~LSgGqkq------~~--r~--l~~p~iLlLDEPts~LD---~~------~~l~~l~~~~g~tiiiv 229 (273)
..+|+|++| .. +. ..+|+++++|||++.+| .. ..++.+.+. |.|+|++
T Consensus 70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~-g~tvi~v 136 (187)
T cd01124 70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRF-GVTTLLT 136 (187)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHC-CCEEEEE
Confidence 457888876 11 11 46899999999999998 43 334455544 8898887
|
A related protein is found in archaea. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.1e-08 Score=92.45 Aligned_cols=133 Identities=14% Similarity=0.102 Sum_probs=73.7
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEE--CCeeCCC-CC-ccEEEEe--------------ccchhhhcc
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF--AQTSSGN-SS-HTITMYM--------------EEHNVMRSL 155 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i--~g~~i~~-~~-~~i~~v~--------------q~~~~~~~~ 155 (273)
-++|++.++||.||-||||-+++++|-++ .-|.-.- +++.+-. .| ..+--++ |....++.
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr- 175 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPR- 175 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHH-
Confidence 36899999999999999999999999887 5554311 1111100 00 0000111 11111110
Q ss_pred CCcccccccccC--CHHHHHHHHHHh---------cccCCHHHHHHHHh----cCCCCEEEEcCcCCCCCHHHHH-----
Q 024032 156 QSGFCVYDSRGF--NYNRVHEGLEEL---------SSWMSEGVHHNQRC----LRSDDCALMKNDAEIDDLKSSP----- 215 (273)
Q Consensus 156 ~~~~tv~en~~~--~~~~~~~~l~~~---------~~~LSgGqkq~~r~----l~~p~iLlLDEPts~LD~~~~l----- 215 (273)
-...+|....+. +.+...++++.+ ..+||||+-||.++ +.++++.++|||.+.||..+.+
T Consensus 176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~ 255 (592)
T KOG0063|consen 176 AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAIT 255 (592)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHH
Confidence 001122211100 001111111111 17899999887643 7899999999999999999554
Q ss_pred -HHHHhcCCcEEEEc
Q 024032 216 -KYVLRRVDFAMVVS 229 (273)
Q Consensus 216 -~~l~~~~g~tiiiv 229 (273)
+.+... +.-||+|
T Consensus 256 IRsl~~p-~~YiIVV 269 (592)
T KOG0063|consen 256 IRSLINP-DRYIIVV 269 (592)
T ss_pred HHHhhCC-CCeEEEE
Confidence 445443 5667777
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.2e-07 Score=80.37 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=29.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSS 135 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i 135 (273)
++.|.||+||||||+++.|.+.+. ..|.|.....++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~ 40 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI 40 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence 789999999999999999998876 367776554443
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.3e-08 Score=95.02 Aligned_cols=64 Identities=19% Similarity=0.156 Sum_probs=47.9
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Cc---cEEEECCeeCCC-----------CCccEEEEeccchh
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS---GLVLFAQTSSGN-----------SSHTITMYMEEHNV 151 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~---G~I~i~g~~i~~-----------~~~~i~~v~q~~~~ 151 (273)
+++++ |++.+|++++|+|+||+|||||+++|+|+.+ +. |.|-.++.++.+ .+..+++.+|+...
T Consensus 145 aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~ 223 (434)
T PRK07196 145 AINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESP 223 (434)
T ss_pred eccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCCh
Confidence 49999 9999999999999999999999999999987 64 333334433321 12346666776654
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-07 Score=80.46 Aligned_cols=50 Identities=6% Similarity=0.105 Sum_probs=31.4
Q ss_pred CCHHHHHHHHh------cCCC-CEEEEcCcCCCCCHH---HHHHHH---HhcCCcEEEEceeCC
Q 024032 183 MSEGVHHNQRC------LRSD-DCALMKNDAEIDDLK---SSPKYV---LRRVDFAMVVSNIAE 233 (273)
Q Consensus 183 LSgGqkq~~r~------l~~p-~iLlLDEPts~LD~~---~~l~~l---~~~~g~tiiiv~~ad 233 (273)
+|.|++|...+ ..+. .++++|||-++|.|. .+++.+ .+ .+.-+|+++|..
T Consensus 237 ~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp 299 (303)
T PF13304_consen 237 LSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSP 299 (303)
T ss_dssp --HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-G
T ss_pred CCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccc
Confidence 49999886422 2233 999999999999998 223323 22 256788776653
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.6e-07 Score=89.99 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=35.2
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccE
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGL 127 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~ 127 (273)
+++.++.+++|.+++||||||+||||++..|++.+. ..|.
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~ 286 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA 286 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC
Confidence 667777888999999999999999999999999886 6653
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.9e-07 Score=89.71 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=52.5
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Cc---cEEEECCeeCCC---------CCccEEEEeccch
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS---GLVLFAQTSSGN---------SSHTITMYMEEHN 150 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~---G~I~i~g~~i~~---------~~~~i~~v~q~~~ 150 (273)
+++++ |++.+|++++|+|+||+|||||+++|++... +. |.|-..|.++.+ ..+++++|+....
T Consensus 141 aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd 216 (428)
T PRK08149 141 AIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSD 216 (428)
T ss_pred EEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCC
Confidence 39999 9999999999999999999999999999887 65 888888887642 2356677766544
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.6e-07 Score=90.77 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=41.8
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
+++++ |.+.+|++++|+|+||+|||||+++|+++.+ +.|.+...|..
T Consensus 153 ~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r 200 (440)
T TIGR01026 153 SIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGER 200 (440)
T ss_pred eeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeec
Confidence 38999 9999999999999999999999999999988 88777665553
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.9e-07 Score=73.07 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=27.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ 132 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g 132 (273)
++.|.||||+||||+++.+++... ..|.+.+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 368999999999999999999877 666666543
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.7e-07 Score=91.53 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=41.1
Q ss_pred cCCCCEEEEcCcCCCC-CHH------HHHHHHHhcCCcEEEEc-----------------eeCCEEEEEeCCeEeeecC
Q 024032 194 LRSDDCALMKNDAEID-DLK------SSPKYVLRRVDFAMVVS-----------------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 194 l~~p~iLlLDEPts~L-D~~------~~l~~l~~~~g~tiiiv-----------------~~ad~i~vl~~G~i~~~g~ 248 (273)
..+|+++++|||+.+| |+. +.++.+++. |.+++++ ..|++.++|.+|++...+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~-~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKA-NCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 3689999999999999 566 345555554 7787777 2478999999999866554
|
|
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.7e-06 Score=80.39 Aligned_cols=135 Identities=15% Similarity=0.208 Sum_probs=76.6
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHH-hhCcc-Ccc--EEEE-CCe---eCC-CCCccEEEEeccchhhhccCCcccccc
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLM-YSVLS-RSG--LVLF-AQT---SSG-NSSHTITMYMEEHNVMRSLQSGFCVYD 163 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll-~gl~~-~~G--~I~i-~g~---~i~-~~~~~i~~v~q~~~~~~~~~~~~tv~e 163 (273)
+-|++| ++.|+|.+=-||||||++| .|.|. --| .=++ -.. .++ +-.+.+..+-=. ..+.++.++. +
T Consensus 240 MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipGDGRE~VVT~~~avkirAEDGR~V~~vDIS-pFI~~LP~g~---d 314 (448)
T PF09818_consen 240 MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPGDGREFVVTDPDAVKIRAEDGRSVEGVDIS-PFINNLPGGK---D 314 (448)
T ss_pred EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCCCCceEEEECCCceEEEecCCceEeCccch-HHHhhCCCCC---C
Confidence 568899 9999999999999999999 46776 333 2111 000 000 011111111111 1111112111 1
Q ss_pred cccCCHHHHHHHHHHhcccCCHHHHHHHHh----cCCCCEEEEcCcCCCC-----CHH----------------HHHHHH
Q 024032 164 SRGFNYNRVHEGLEELSSWMSEGVHHNQRC----LRSDDCALMKNDAEID-----DLK----------------SSPKYV 218 (273)
Q Consensus 164 n~~~~~~~~~~~l~~~~~~LSgGqkq~~r~----l~~p~iLlLDEPts~L-----D~~----------------~~l~~l 218 (273)
...++. ..=||-.-|+..+ =..+++||+||=|++- |.. +.++.+
T Consensus 315 T~~FsT-----------~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l 383 (448)
T PF09818_consen 315 TTCFST-----------ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSL 383 (448)
T ss_pred CCcccc-----------cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHH
Confidence 111110 2235656554322 3578999999999974 332 335667
Q ss_pred HhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 219 LRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 219 ~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
.++.|.+.|+| ..||+|++|++=+.
T Consensus 384 ~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 384 YEKLGVSTILVVGGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred HHHcCceEEEEeccchhhHhhCCEEEEecCccc
Confidence 67779877777 77999999998654
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.9e-07 Score=65.18 Aligned_cols=35 Identities=34% Similarity=0.525 Sum_probs=28.4
Q ss_pred eeeeeeEEcC-CcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 88 IQKGGMDIPP-VITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 88 L~~is~~i~~-Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+++-.+++.+ |.++.|.||||||||||+.+|.=++
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556677775 5699999999999999999987543
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.3e-07 Score=89.84 Aligned_cols=59 Identities=5% Similarity=-0.118 Sum_probs=46.3
Q ss_pred cCCHHHHHHHHh----cC----CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeC
Q 024032 182 WMSEGVHHNQRC----LR----SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKA 240 (273)
Q Consensus 182 ~LSgGqkq~~r~----l~----~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~ 240 (273)
.|||||+||..+ +. +|++||||||++|||+. +.++.+.+ +.+||+| ..||++++|++
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~~vi~iTH~~~~~~~ad~~~~l~k 517 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RHQVLCVTHLPQVAAHADAHFKVEK 517 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEEChHHHHHhcCeEEEEEE
Confidence 489999997622 33 47999999999999999 34555653 7899888 55899999988
Q ss_pred Ce
Q 024032 241 GD 242 (273)
Q Consensus 241 G~ 242 (273)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 64
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.2e-06 Score=80.38 Aligned_cols=39 Identities=28% Similarity=0.426 Sum_probs=31.8
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCee
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTS 134 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~ 134 (273)
.++..+.|.||+||||||+++.+.+.+. ..|.|.....+
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp 160 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP 160 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC
Confidence 5678999999999999999999998766 46777655444
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.6e-07 Score=81.18 Aligned_cols=40 Identities=15% Similarity=0.256 Sum_probs=30.5
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHh--hCccCccEEEECCe
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMY--SVLSRSGLVLFAQT 133 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~--gl~~~~G~I~i~g~ 133 (273)
-+++|+++.|.||+|+|||||...++ ++.+..+.+++...
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 58899999999999999999988654 33334556666553
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.4e-07 Score=77.52 Aligned_cols=50 Identities=32% Similarity=0.315 Sum_probs=36.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----CCccEEEEeccc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----SSHTITMYMEEH 149 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~~~~i~~v~q~~ 149 (273)
|++++|+||||||||||+++|++.... .+.+.+..+.. ....+.+..|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT--QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC--eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999987642 46676766543 123455555553
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.8e-06 Score=64.41 Aligned_cols=37 Identities=30% Similarity=0.501 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc-Cc-cEEEECCe
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RS-GLVLFAQT 133 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~-G~I~i~g~ 133 (273)
++..+.|+||+|+||||+++.|+..+. .. +.+.++..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~ 39 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE 39 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE
Confidence 367899999999999999999999877 33 45555443
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.9e-07 Score=88.42 Aligned_cols=63 Identities=10% Similarity=-0.021 Sum_probs=44.6
Q ss_pred ccCCHHHHHHHHh----c----------CCCCEEEEcCcC-CCCCHHH---HHHHHHhcCCcEEEEc-------eeCCEE
Q 024032 181 SWMSEGVHHNQRC----L----------RSDDCALMKNDA-EIDDLKS---SPKYVLRRVDFAMVVS-------NIAEIY 235 (273)
Q Consensus 181 ~~LSgGqkq~~r~----l----------~~p~iLlLDEPt-s~LD~~~---~l~~l~~~~g~tiiiv-------~~ad~i 235 (273)
..|||||+||..+ + .+|+++|||||| ++||+.. ....+.+-.|.|||+| ..+|++
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~~~d~~ 546 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQKFDRH 546 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchhhhhcE
Confidence 4699999997632 1 489999999998 7899992 2222222137788888 446898
Q ss_pred EEEeC-CeE
Q 024032 236 KALKA-GDS 243 (273)
Q Consensus 236 ~vl~~-G~i 243 (273)
++|.+ |+.
T Consensus 547 ~~l~~~~~~ 555 (562)
T PHA02562 547 LKMEKVGRF 555 (562)
T ss_pred EEEEEECCe
Confidence 88875 554
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.5e-07 Score=83.78 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=41.8
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
++++ |.+.+|++++|+|+||+|||||+++|+|+.. +.|.+..-|+.
T Consensus 60 iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 60 IDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred Eeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 9999 9999999999999999999999999999998 87877765543
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=98.32 E-value=1e-06 Score=93.63 Aligned_cols=60 Identities=12% Similarity=-0.016 Sum_probs=47.3
Q ss_pred ccCCHHHHHHHH---h--c----C-----CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeC
Q 024032 181 SWMSEGVHHNQR---C--L----R-----SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIA 232 (273)
Q Consensus 181 ~~LSgGqkq~~r---~--l----~-----~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~a 232 (273)
..|||||+++.. + + + +|++|||||||++||+. +.+..+.. .|.+|+|| .++
T Consensus 949 ~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~~~~~~~ 1027 (1042)
T TIGR00618 949 ATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPEFRERIP 1027 (1042)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHHhhC
Confidence 579999998752 1 2 1 79999999999999999 44566665 48998888 567
Q ss_pred CEEEEEeCC
Q 024032 233 EIYKALKAG 241 (273)
Q Consensus 233 d~i~vl~~G 241 (273)
|+|.|++.|
T Consensus 1028 ~~i~v~~~~ 1036 (1042)
T TIGR00618 1028 HRILVKKTN 1036 (1042)
T ss_pred CEEEEEECC
Confidence 999999764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.1e-07 Score=79.04 Aligned_cols=28 Identities=39% Similarity=0.533 Sum_probs=26.4
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++|++++|+||||||||||++.|+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6899999999999999999999999876
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.7e-07 Score=86.56 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=52.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
.++.+.++..|..| ..+ ++++ |++.+|++++|+|+||+|||||+++|+|+.. +.|.+.+.|+.
T Consensus 129 ~~~r~~v~~~l~tG-i~a----ID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 129 AMVRQPITQPLMTG-IRA----IDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred ceeccCHhheeCCC-cee----eeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 45666777766544 344 9999 9999999999999999999999999999988 88887776654
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.6e-07 Score=76.18 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=31.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSG 136 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~ 136 (273)
+|++++|+||||||||||+++|++++.. +.++|.++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~---~~i~gd~~~ 38 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA---KFIDGDDLH 38 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC---EEECCcccC
Confidence 5899999999999999999999998753 467777653
|
|
| >PRK07960 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.6e-07 Score=85.55 Aligned_cols=62 Identities=18% Similarity=0.161 Sum_probs=49.5
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Cc---cEEEECCeeCCC--------CCccEEEEeccch
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS---GLVLFAQTSSGN--------SSHTITMYMEEHN 150 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~---G~I~i~g~~i~~--------~~~~i~~v~q~~~ 150 (273)
++.+ |++.+|++++|+|+||+|||||+++|+|+.+ +. |.|.+.|.++.+ ..+..+++++...
T Consensus 166 ID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 166 INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA 239 (455)
T ss_pred eeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence 4444 9999999999999999999999999999988 64 899999988753 1234566666543
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.7e-06 Score=71.56 Aligned_cols=26 Identities=38% Similarity=0.455 Sum_probs=23.9
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHh
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMY 119 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~ 119 (273)
-+++|.++.|.|++|||||||...++
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~ 46 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFV 46 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHH
Confidence 47899999999999999999998874
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.4e-07 Score=84.47 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=50.2
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC--CCCccEEEEeccchh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG--NSSHTITMYMEEHNV 151 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~--~~~~~i~~v~q~~~~ 151 (273)
++.+.-.+++|++++|+|+||+|||||++.|+|... ..|.|.+++.... ...+.+.+++|...+
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l 251 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLL 251 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCee
Confidence 556666788999999999999999999999999999 9999999764322 233456666666543
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2e-06 Score=85.60 Aligned_cols=58 Identities=3% Similarity=-0.150 Sum_probs=44.9
Q ss_pred CCHHHHHHHHh----c----CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCC
Q 024032 183 MSEGVHHNQRC----L----RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAG 241 (273)
Q Consensus 183 LSgGqkq~~r~----l----~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G 241 (273)
|||||+||..+ + .+|+++|||||++|||+. +.++.+.+ +.+||+| .+||+.+++.++
T Consensus 431 lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 431 ASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred CCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHhCCEEEEEecc
Confidence 79999998632 2 268999999999999999 34555543 6888888 568999998774
Q ss_pred e
Q 024032 242 D 242 (273)
Q Consensus 242 ~ 242 (273)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 3
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.2e-07 Score=78.41 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc-CccEE
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV 128 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I 128 (273)
+..++||.||||||||||++.|+++++ ..|.+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 345999999999999999999999999 88883
|
|
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.2e-07 Score=84.97 Aligned_cols=49 Identities=12% Similarity=0.013 Sum_probs=42.2
Q ss_pred eeeeeeEE---cCCcE-----EEEEcCCCChHHHHHHHHhhCcc-C---ccEEEECCeeCC
Q 024032 88 IQKGGMDI---PPVIT-----ILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSG 136 (273)
Q Consensus 88 L~~is~~i---~~Ge~-----~aivGpnGsGKSTLl~ll~gl~~-~---~G~I~i~g~~i~ 136 (273)
++++++.+ ++|+. +||+|+||||||||++.|.+++. . .|.|.++|..+.
T Consensus 82 l~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt 142 (347)
T PLN02796 82 EDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT 142 (347)
T ss_pred HHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc
Confidence 88888887 56775 99999999999999999999987 4 588899988764
|
|
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-06 Score=84.73 Aligned_cols=47 Identities=13% Similarity=0.139 Sum_probs=43.5
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
+++++ |.+.+|++++|+|+||+|||||+++|+++.. +.|.|.+.|+.
T Consensus 153 ~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer 200 (441)
T PRK09099 153 IVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER 200 (441)
T ss_pred eccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence 39999 9999999999999999999999999999988 88988888754
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.8e-05 Score=82.45 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=28.4
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
-+|+++. ..+.++.|.|||++||||+||.++-.
T Consensus 598 pnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~ 630 (854)
T PRK05399 598 PNDCDLD-EERRLLLITGPNMAGKSTYMRQVALI 630 (854)
T ss_pred ecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHH
Confidence 6677777 67789999999999999999998753
|
|
| >TIGR03497 FliI_clade2 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-06 Score=82.77 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=43.8
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i 135 (273)
++++ |.+.+|++++|+|+||+|||||+++|++..+ +.|.|.+.|+..
T Consensus 128 iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~ 175 (413)
T TIGR03497 128 IDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERG 175 (413)
T ss_pred eeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccch
Confidence 9999 9999999999999999999999999999998 899888888654
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.2e-06 Score=86.10 Aligned_cols=62 Identities=16% Similarity=0.061 Sum_probs=53.2
Q ss_pred EEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 69 ~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
+.+++..| |+..+ ++++++.+..|+.++|+||||+|||||++.|.|+++ .+|++.+....+.
T Consensus 187 ~~d~~~v~--Gq~~~----~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVI--GQEQG----KRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEE--CcHHH----HhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 34565555 55555 899999999999999999999999999999999999 9999999887664
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.2e-06 Score=75.49 Aligned_cols=28 Identities=36% Similarity=0.423 Sum_probs=26.1
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999863
|
|
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.2e-06 Score=75.53 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=35.9
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSG 136 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~ 136 (273)
++|.+++|+|+||||||||.+.|.+.+. ..|.+.++|.++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 6788999999999999999999999766 4578999987764
|
|
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-06 Score=83.84 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=42.5
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
+++++ |.+.+|++++|+|+||+|||||+++|++... +.|.+...|..
T Consensus 135 ~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~ 182 (422)
T TIGR02546 135 AIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGER 182 (422)
T ss_pred eehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccC
Confidence 39999 9999999999999999999999999999988 88888775543
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.8e-06 Score=78.90 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=32.7
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+++.++.+++|++++|+||||+||||++..|++.+.
T Consensus 127 ~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 127 LDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred hcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 777888899999999999999999999999998654
|
|
| >TIGR03498 FliI_clade3 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.7e-06 Score=83.01 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=43.2
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
++ .+|++.+|++++|+|+||+|||||+++|+++.+ +.|.|.+.|+.-+
T Consensus 131 iD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~ 179 (418)
T TIGR03498 131 ID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGR 179 (418)
T ss_pred Ee-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeech
Confidence 55 699999999999999999999999999999988 8999888877543
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.1e-06 Score=79.93 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=26.0
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++|..++|+||+||||||++++|++.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4889999999999999999999999874
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.5e-06 Score=72.01 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCccCccEEEE
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLF 130 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i 130 (273)
|++++|+||||||||||++.|++.+...|.+.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~ 33 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHF 33 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEE
Confidence 578999999999999999999998773365554
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.4e-06 Score=86.31 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=44.2
Q ss_pred ccCCHHHHHHH----H-----h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEE
Q 024032 181 SWMSEGVHHNQ----R-----C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKA 237 (273)
Q Consensus 181 ~~LSgGqkq~~----r-----~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~v 237 (273)
..|||||+++. | + +.+|+++||||||++||+. ..+..+... +.+||+| ..||++++
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~-~~~iiiith~~~~~~~~d~~~~ 865 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRK-IPQVIIVSHDEELKDAADYVIR 865 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHhCCeEEE
Confidence 46999999843 1 1 4789999999999999998 234444443 6788888 55899999
Q ss_pred Ee
Q 024032 238 LK 239 (273)
Q Consensus 238 l~ 239 (273)
|.
T Consensus 866 l~ 867 (880)
T PRK03918 866 VS 867 (880)
T ss_pred EE
Confidence 97
|
|
| >PRK08472 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.8e-06 Score=81.86 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=43.9
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
+++++ +++.+|++++|+|+||+|||||+++|++... +.+.|...|+.-+
T Consensus 147 aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergr 196 (434)
T PRK08472 147 SIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGR 196 (434)
T ss_pred Hhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccch
Confidence 48999 9999999999999999999999999999887 8888887776543
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2e-06 Score=80.53 Aligned_cols=53 Identities=19% Similarity=0.150 Sum_probs=47.0
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCc-------EEEEEcCCCChHHHHHHHHhhC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVI-------TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge-------~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+..++++++++|+ ..... ++.++|+++.|+ .++|+|++|+|||||++.+.|-
T Consensus 16 ~g~~~~~~~~~~~~-~~~~~----~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 16 KGDTEALAAAVRED-ASTGS----TSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred CCccccccccccCC-CCccc----ccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 56788999999997 44445 999999999999 9999999999999999999874
|
|
| >PRK05922 type III secretion system ATPase; Validated | Back alignment and domain information |
|---|
Probab=98.09 E-value=4e-06 Score=80.77 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=40.6
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
++.+ |.+.+|+.++|+||||+|||||+++|+|..+ +.|.+..-|+.
T Consensus 148 ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGer 194 (434)
T PRK05922 148 IDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGER 194 (434)
T ss_pred ecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCC
Confidence 6665 9999999999999999999999999999988 88888665553
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.5e-05 Score=70.77 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=27.7
Q ss_pred cCCCCEEEEcCcCCC------CCHH------HHHHHHHhcCCcEEEEceeC
Q 024032 194 LRSDDCALMKNDAEI------DDLK------SSPKYVLRRVDFAMVVSNIA 232 (273)
Q Consensus 194 l~~p~iLlLDEPts~------LD~~------~~l~~l~~~~g~tiiiv~~a 232 (273)
..+|+++|+| |+++ +|+. +.+..++++.|.||+++.|.
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~ 158 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHV 158 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 4799999999 7764 5766 23455666669999999554
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.8e-06 Score=89.80 Aligned_cols=50 Identities=14% Similarity=0.321 Sum_probs=38.1
Q ss_pred cEEEEEcCCCChHHHHHHHH----hhCcc--CccEEEECCeeCCC---CCccEEEEecc
Q 024032 99 ITILLMGFSGSGKSSLVNLM----YSVLS--RSGLVLFAQTSSGN---SSHTITMYMEE 148 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll----~gl~~--~~G~I~i~g~~i~~---~~~~i~~v~q~ 148 (273)
.+++|+|||||||||++.+| .|..+ ..|.+++.+..+.. .+..|.++|++
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~~~~~a~V~l~F~~ 87 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQETDVRAQIRLQFRD 87 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCccHhhhheeEEEEEc
Confidence 49999999999999999999 58877 47998887765532 33455666643
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR03496 FliI_clade1 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.8e-06 Score=80.61 Aligned_cols=60 Identities=17% Similarity=0.065 Sum_probs=46.8
Q ss_pred EEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 69 ~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
-+.++..|..| ..+ ++.+ |.+.+|++++|+|+||+|||||+++|+++.. +.+.+...|+.
T Consensus 114 R~~~~~~~~tG-i~~----id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer 174 (411)
T TIGR03496 114 RAPIDEPLDVG-VRA----INGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGER 174 (411)
T ss_pred ccCcceEeeee-EEe----ecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecC
Confidence 33444455433 334 8888 9999999999999999999999999999988 77776655553
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.9e-06 Score=71.50 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
|++++|+||||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 68999999999999999999999765
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.7e-06 Score=71.07 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=28.3
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
++++.+++.+| +++|.||||+||||++.+|.-.+
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 77888888777 99999999999999999987654
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.6e-06 Score=87.06 Aligned_cols=59 Identities=15% Similarity=0.014 Sum_probs=45.0
Q ss_pred ccCCHHHHHHH---Hhc---------CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCE
Q 024032 181 SWMSEGVHHNQ---RCL---------RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEI 234 (273)
Q Consensus 181 ~~LSgGqkq~~---r~l---------~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~ 234 (273)
..|||||+++. +++ .+|++|||||||++||+. +.+..+.+. |+||+|| ++..+
T Consensus 948 ~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~-g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 948 RTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNAS-GKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred ccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEecHHHHHHhccce
Confidence 67999999876 222 279999999999999999 446667655 9999999 33456
Q ss_pred EEEEeC
Q 024032 235 YKALKA 240 (273)
Q Consensus 235 i~vl~~ 240 (273)
|.|-..
T Consensus 1027 i~V~k~ 1032 (1047)
T PRK10246 1027 IKVKKI 1032 (1047)
T ss_pred EEEEEC
Confidence 666654
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.2e-06 Score=71.52 Aligned_cols=32 Identities=19% Similarity=0.438 Sum_probs=28.9
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
|+++++..+++++ +|+|++|||||||++.+.+
T Consensus 10 ~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 10 LSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence 8888888888766 9999999999999999987
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >PRK05688 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.2e-06 Score=81.76 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=38.7
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C---ccEEEECCee
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTS 134 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~---~G~I~i~g~~ 134 (273)
+++.+ |.+.+|++++|+|+||+|||||+++|+|+.. + .|.|-..+.+
T Consensus 158 aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~e 208 (451)
T PRK05688 158 SINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGRE 208 (451)
T ss_pred eecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHh
Confidence 49999 9999999999999999999999999999876 4 2444444443
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.6e-06 Score=84.88 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=42.5
Q ss_pred ccCCHHHHHHHH---------h-cCCCCEEEEcCcCCCCCHHH------HHHHHHhcC-C-cEEEEc-------eeCCEE
Q 024032 181 SWMSEGVHHNQR---------C-LRSDDCALMKNDAEIDDLKS------SPKYVLRRV-D-FAMVVS-------NIAEIY 235 (273)
Q Consensus 181 ~~LSgGqkq~~r---------~-l~~p~iLlLDEPts~LD~~~------~l~~l~~~~-g-~tiiiv-------~~ad~i 235 (273)
..|||||+++.. + +.+|++++|||||++||+.. .+....+.. + .+||++ ..||++
T Consensus 800 ~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d~i 879 (895)
T PRK01156 800 DSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVADVA 879 (895)
T ss_pred ccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcCeE
Confidence 469999998641 2 47899999999999999993 223222222 3 377777 568999
Q ss_pred EEEe
Q 024032 236 KALK 239 (273)
Q Consensus 236 ~vl~ 239 (273)
+.+.
T Consensus 880 i~~~ 883 (895)
T PRK01156 880 YEVK 883 (895)
T ss_pred EEEE
Confidence 8886
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.2e-06 Score=78.59 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=36.4
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i 135 (273)
++|++++|+||||+||||++..|++.+. ..|+|.+.+.|.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 5789999999999999999999999998 778999877765
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.1e-06 Score=77.65 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=30.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc---CccEEEECCee
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTS 134 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~---~~G~I~i~g~~ 134 (273)
.++||.||||||||||+++|.+++. .+|.|.+-+.|
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D 101 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTD 101 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecc
Confidence 4999999999999999999999876 46777664444
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.9e-06 Score=81.06 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=39.9
Q ss_pred cceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECC
Q 024032 86 GGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQ 132 (273)
Q Consensus 86 ~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g 132 (273)
.+++++ |++.+|+.++|+|+||+|||||+++|+|+.+ +.|.|.+.|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liG 200 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG 200 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEEC
Confidence 348887 9999999999999999999999999999985 456777644
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.6e-06 Score=85.91 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=39.0
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc--EEEECCee
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG--LVLFAQTS 134 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G--~I~i~g~~ 134 (273)
+++.++.+++|+++++|||||+||||++..|++.+. ..| .|.+-..|
T Consensus 175 l~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D 224 (767)
T PRK14723 175 LRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD 224 (767)
T ss_pred ccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc
Confidence 677888888999999999999999999999999886 555 56554433
|
|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.7e-06 Score=88.27 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=40.6
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
+.+..|++.+| +++|+|+|||||||+|++|++++. ..|.+.+++.+
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~ 64 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcc
Confidence 66778888887 999999999999999999999987 88989888654
|
|
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.2e-06 Score=73.73 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=22.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++||.||||||||||++.|.+++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999875
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 5e-10
Identities = 38/281 (13%), Positives = 74/281 (26%), Gaps = 90/281 (32%)
Query: 8 GEVDEYDPSGLVYCWWRSAAKFDECVKLKLD----------LPNVSTLTPRLRVLREMER 57
EV + Y + S K E + + L N + + + V R
Sbjct: 84 EEVLRIN-----YKFLMSPIK-TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR---- 133
Query: 58 LALIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNL 117
+LR L R +L+ G GSGK+ +
Sbjct: 134 -----LQPYLKLRQALLELRPAKN-------------------VLIDGVLGSGKTWVAL- 168
Query: 118 MYSVLSRSGLVLFAQTSSGNSSHTITM--YMEEHNVMRSLQS-------GFCVYDSRGFN 168
V + Q + + V+ LQ + N
Sbjct: 169 --DVCLSYKV----QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 169 Y-NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFA-- 225
R+H EL + + + CL L+ + ++++ + +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPY--ENCL------LV-----LLNVQN--AKAWNAFNLSCK 267
Query: 226 -MVVSNIAEIYKALKAGDSKPL-----------DATKRLFS 254
++ + ++ L A + + D K L
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 3e-05
Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 14/124 (11%)
Query: 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYME 147
+ + +TIL+MG G GKSS VN S++ + S +
Sbjct: 29 LGNLKQEDVNSLTILVMGKGGVGKSSTVN---SIIGER---VV---SISPFQSEGPRPVM 79
Query: 148 EHNVMRSLQSGFCVYDSRGFNYNRVH--EGLEELSSWMS-EGVHHNQRCLRSDDCALMKN 204
+ D+ G L + S++ + + R D +
Sbjct: 80 VSRSRAGFT--LNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNL 137
Query: 205 DAEI 208
D +
Sbjct: 138 DKLV 141
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* Length = 274 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 3e-04
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 11/91 (12%)
Query: 86 GGIQKGGMDIPPVITILLMGFSGSGKSSLVNLM--YSVLSRSGLVLFAQTSSGNSSHTIT 143
G + G T++++G SG GKS+L+N + + S +
Sbjct: 1 GPLGSGF-----EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSK 55
Query: 144 MYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174
+ ++E V L + D+ GF +
Sbjct: 56 VLIKEGGVQLLL----TIVDTPGFGDAVDNS 82
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Length = 301 | Back alignment and structure |
|---|
Score = 39.8 bits (92), Expect = 5e-04
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYM---EEHNVMRSLQ 156
T++++G SG GKS+L+N ++ V+ + I EE V L
Sbjct: 20 TLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRL- 78
Query: 157 SGFCVYDSRGFNYN 170
V D+ G+
Sbjct: 79 ---TVVDTPGYGDA 89
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 273 | |||
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.98 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.96 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.96 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.94 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.94 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.93 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.93 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.92 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.92 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.92 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.91 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.9 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.86 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.85 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.85 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.83 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.82 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.82 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.82 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.82 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.81 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.8 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.79 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.79 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.78 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.77 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.75 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.75 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.74 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.74 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.73 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.73 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.72 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.71 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.71 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.7 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.68 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.67 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.67 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.66 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.65 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.65 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.65 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.63 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.62 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.62 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.61 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.61 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.59 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.58 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.58 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.57 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.55 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.54 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.5 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.47 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.47 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.46 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.45 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.43 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.4 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.4 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.4 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.37 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.37 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.36 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.36 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.32 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.31 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.31 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.3 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.29 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.28 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.25 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.24 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.22 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.2 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.18 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.18 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.18 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.16 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.14 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.14 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.13 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.11 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.08 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.05 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.99 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 98.99 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.99 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.98 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.97 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.97 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.96 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.96 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.93 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 98.9 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.88 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.84 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.84 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.81 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.79 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.72 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.72 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.71 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.68 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.67 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.64 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.63 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.62 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.61 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.6 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.59 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 98.59 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.58 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.58 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.52 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.48 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.48 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.46 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.42 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.42 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.41 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.4 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.37 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.36 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.31 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.3 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.28 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.27 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 98.25 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.25 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.23 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.22 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.22 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.2 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.19 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 98.13 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.11 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 98.11 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 98.09 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.07 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.05 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 98.04 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 98.03 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.91 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.87 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.87 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.86 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.85 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.84 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.82 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.8 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.79 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.79 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.78 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.77 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.75 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.74 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.74 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.68 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.67 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.61 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.61 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.57 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.56 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.55 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.52 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.52 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.51 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.5 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.5 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.46 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.46 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.45 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 97.43 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.4 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 97.39 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.34 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.33 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.33 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.31 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.31 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.29 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 97.26 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.24 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.24 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 97.22 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.2 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.19 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.16 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.15 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.14 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.14 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.13 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.12 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.1 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.1 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.1 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 97.07 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.06 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.06 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.04 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 97.04 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.04 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.01 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 97.01 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.96 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.96 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.95 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.94 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.93 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.9 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.9 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.89 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.87 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.86 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.85 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.84 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.84 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.83 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.83 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.83 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.82 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.81 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.81 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.81 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.8 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.79 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.79 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.79 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.78 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.78 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.78 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.78 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.77 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.77 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 96.77 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.77 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.77 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.76 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.76 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.76 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.75 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.75 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.74 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.74 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.74 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.74 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.73 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.7 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.7 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.7 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.7 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.7 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.69 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.69 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.67 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.66 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.66 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.66 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.65 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.65 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.64 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.64 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.63 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.63 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.62 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.61 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.61 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.6 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 96.6 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 96.59 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.59 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.59 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 96.59 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.58 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 96.58 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.58 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 96.57 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.55 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 96.54 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 96.54 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 96.54 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.53 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.53 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 96.53 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.52 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.52 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 96.52 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 96.52 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 96.52 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 96.52 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 96.52 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 96.51 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.51 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 96.5 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 96.49 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 96.48 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.48 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 96.48 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.48 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 96.47 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 96.47 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 96.47 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 96.46 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.44 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 96.44 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 96.44 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.44 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 96.42 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 96.41 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 96.41 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 96.4 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.39 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 96.38 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 96.38 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 96.38 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 96.37 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 96.37 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 96.37 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 96.36 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.36 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 96.36 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 96.36 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 96.35 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.35 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 96.34 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.34 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 96.34 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 96.33 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 96.33 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.33 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 96.33 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 96.33 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 96.32 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 96.32 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 96.32 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 96.32 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.32 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 96.3 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 96.3 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.29 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 96.28 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 96.27 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 96.26 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 96.24 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 96.23 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.23 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 96.23 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 96.23 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 96.22 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.21 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 96.2 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 96.2 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 96.19 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 96.19 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 96.17 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 96.17 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 96.17 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.17 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 96.16 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.15 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 96.15 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.14 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 96.14 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.13 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 96.13 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 96.12 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 96.11 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 96.09 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.05 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.04 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.04 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 96.03 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 96.03 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 96.03 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 96.03 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.02 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.02 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 95.97 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 95.97 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 95.96 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.95 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.95 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.94 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 95.92 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.91 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 95.91 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.91 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.91 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 95.89 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 95.88 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.87 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 95.82 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.82 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 95.82 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.82 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 95.79 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 95.74 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.72 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 95.66 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 95.65 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 95.61 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 95.6 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 95.55 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 95.49 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 95.48 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 95.42 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 95.42 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 95.42 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 95.42 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 94.37 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 95.36 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.29 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.28 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 95.28 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 95.26 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.25 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 95.25 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 95.22 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.2 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 95.11 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 95.07 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 95.07 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 95.06 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.95 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.92 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 94.9 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 94.77 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 94.74 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 94.74 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 94.74 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 94.74 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 94.74 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 94.74 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.73 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 94.71 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 94.7 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 94.68 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 94.67 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 94.65 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 94.63 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 94.61 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 94.52 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 94.5 |
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=325.72 Aligned_cols=195 Identities=15% Similarity=0.182 Sum_probs=165.4
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----C
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----S 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~ 138 (273)
.+++++|++++| +++++ |++|||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++.. .
T Consensus 10 ~~l~~~~l~~~~--~~~~v----L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 83 (266)
T 4g1u_C 10 ALLEASHLHYHV--QQQAL----INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKAL 83 (266)
T ss_dssp CEEEEEEEEEEE--TTEEE----EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHH
T ss_pred ceEEEEeEEEEe--CCeeE----EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHH
Confidence 479999999988 55777 999999999999999999999999999999999999 99999999999864 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC---------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC-
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF---------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LR- 195 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~---------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~- 195 (273)
++.+++++|++.+ .+.+||+||..+ ..+++.++++.++ .+||||||||. |+ +.
T Consensus 84 ~~~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~ 159 (266)
T 4g1u_C 84 ARTRAVMRQYSEL----AFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQL 159 (266)
T ss_dssp HHHEEEECSCCCC----CSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHT
T ss_pred hheEEEEecCCcc----CCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 4568999998875 456799998321 2456777888776 67999999987 44 56
Q ss_pred -----CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 196 -----SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 196 -----~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+|++|||||||+|||+. +.++++.++.++|||+| .+||++++|++|++++.|+++++++.+
T Consensus 160 ~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~ 239 (266)
T 4g1u_C 160 WQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNAE 239 (266)
T ss_dssp CCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCHH
T ss_pred cccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCcH
Confidence 99999999999999999 34566766546799888 568999999999999999999999888
Q ss_pred hhHHHhCCceEEE
Q 024032 257 GLRKCSKISFCIL 269 (273)
Q Consensus 257 ~l~~~~~~~~~~~ 269 (273)
.+.+.|+.+..+.
T Consensus 240 ~l~~~~~~~~~~~ 252 (266)
T 4g1u_C 240 TLTQWYQADLGVS 252 (266)
T ss_dssp HHHHHCCSCEEEE
T ss_pred HHHHHhCCCcEEe
Confidence 8999998876543
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=332.23 Aligned_cols=208 Identities=18% Similarity=0.155 Sum_probs=167.2
Q ss_pred cchhhhhhhhHHHHHHHhchhhh--------ccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCC
Q 024032 37 LDLPNVSTLTPRLRVLREMERLA--------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSG 108 (273)
Q Consensus 37 ~~~~~~~~~~~r~~~~~~~~~~~--------~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnG 108 (273)
.+++.+.++..|+.++++.++.. .....+.++++||+|+|+. +.++ |+++||+|++||++||+||||
T Consensus 16 ~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~-~~~v----L~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 16 PRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD-GRET----LQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp ---CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST-TCEE----EEEEEEEECTTCEEEEESSSC
T ss_pred hhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC-CCce----eeeeeEEEcCCCEEEEECCCC
Confidence 34577888999999998755421 1112346999999999963 4567 999999999999999999999
Q ss_pred ChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc-----CCHHHHHHHHH
Q 024032 109 SGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-----FNYNRVHEGLE 177 (273)
Q Consensus 109 sGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-----~~~~~~~~~l~ 177 (273)
||||||+++|+|+++ ++|+|.++|+++.. +++.+++++|++.+ |..||+||.. ...+++.++++
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~l-----f~~Tv~eNi~~~~~~~~~~~~~~~~~ 165 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVL-----FNDTIADNIRYGRVTAGNDEVEAAAQ 165 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCC-----CSEEHHHHHHTTSTTCCHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCcc-----CcccHHHHHHhhcccCCHHHHHHHHH
Confidence 999999999999999 99999999999875 46789999999874 4569999943 23555666655
Q ss_pred Hhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEE
Q 024032 178 ELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMV 227 (273)
Q Consensus 178 ~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tii 227 (273)
.++ .+||||||||. |+ +++|+||||||||++||+. +.++++.+ ++|+|
T Consensus 166 ~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi 243 (306)
T 3nh6_A 166 AAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTI 243 (306)
T ss_dssp HHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEE
T ss_pred HhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEE
Confidence 543 47999999987 44 7899999999999999999 33455544 78988
Q ss_pred Ec-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 228 VS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 228 iv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+| ..||+|++|++|+|++.|+++++++..
T Consensus 244 ~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~~ 279 (306)
T 3nh6_A 244 VVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRG 279 (306)
T ss_dssp EECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHHT
T ss_pred EEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhcC
Confidence 88 348999999999999999999998643
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=338.91 Aligned_cols=185 Identities=20% Similarity=0.265 Sum_probs=157.2
Q ss_pred CCceEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---
Q 024032 64 DGLNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN--- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~--- 137 (273)
..+++++|++++|..+. ..+ |++|||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~a----L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~ 97 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQA----LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSE 97 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEE----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCH
T ss_pred CceEEEEeEEEEeCCCCCCeEE----EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH
Confidence 45899999999997543 345 999999999999999999999999999999999999 99999999999864
Q ss_pred -----CCccEEEEeccchhhhccCCccccccccc-------CC----HHHHHHHHHHhc---------ccCCHHHHHHH-
Q 024032 138 -----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FN----YNRVHEGLEELS---------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 -----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~----~~~~~~~l~~~~---------~~LSgGqkq~~- 191 (273)
.++.++|+||++.+ ++.+||+||.. .+ .+++.++++.++ .+||||||||.
T Consensus 98 ~~~~~~r~~Ig~v~Q~~~l----~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVa 173 (366)
T 3tui_C 98 SELTKARRQIGMIFQHFNL----LSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVA 173 (366)
T ss_dssp HHHHHHHTTEEEECSSCCC----CTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHH
T ss_pred HHHHHHhCcEEEEeCCCcc----CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH
Confidence 25679999999876 45569999832 22 234667777776 78999999987
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|+ +.+|++|||||||++||+. +.+++++++.|+|||+| .+||||++|++|++++.|++++++.
T Consensus 174 IArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~ 253 (366)
T 3tui_C 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 253 (366)
T ss_dssp HHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHS
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 44 7899999999999999999 44667766669999999 5699999999999999999999987
Q ss_pred Ch
Q 024032 255 AP 256 (273)
Q Consensus 255 ~~ 256 (273)
++
T Consensus 254 ~p 255 (366)
T 3tui_C 254 HP 255 (366)
T ss_dssp SC
T ss_pred CC
Confidence 54
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-45 Score=330.48 Aligned_cols=191 Identities=14% Similarity=0.173 Sum_probs=157.7
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC-------
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG------- 136 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~------- 136 (273)
..++++|++++|+. +..+ |++|||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++.
T Consensus 6 ~~l~i~~ls~~y~~-~~~~----L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~ 80 (275)
T 3gfo_A 6 YILKVEELNYNYSD-GTHA----LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIM 80 (275)
T ss_dssp EEEEEEEEEEECTT-SCEE----EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHH
T ss_pred cEEEEEEEEEEECC-CCeE----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHH
Confidence 47999999999953 3446 999999999999999999999999999999999999 9999999999983
Q ss_pred CCCccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 137 NSSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 137 ~~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
..++.+++++|++.. .++..||+||.. .+. +++.++++.++ .+||||||||. |+
T Consensus 81 ~~~~~ig~v~Q~~~~---~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAra 157 (275)
T 3gfo_A 81 KLRESIGIVFQDPDN---QLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV 157 (275)
T ss_dssp HHHHSEEEECSSGGG---TCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred HHhCcEEEEEcCccc---ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHH
Confidence 135679999999753 145679999832 232 34666777766 78999999987 33
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHH-hcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVL-RRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~-~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+.+|++|||||||+|||+. +.++++. ++ |+|||+| .+||+|++|++|++++.|+++++++++.
T Consensus 158 L~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~ 236 (275)
T 3gfo_A 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE 236 (275)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCHH
Confidence 7899999999999999999 3456666 44 8999998 5689999999999999999999987766
Q ss_pred hHHHhCC
Q 024032 258 LRKCSKI 264 (273)
Q Consensus 258 l~~~~~~ 264 (273)
+.+.|++
T Consensus 237 ~~~~~~~ 243 (275)
T 3gfo_A 237 VIRKVNL 243 (275)
T ss_dssp HHHHHHH
T ss_pred HHHHcCC
Confidence 5555543
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-44 Score=333.84 Aligned_cols=182 Identities=17% Similarity=0.243 Sum_probs=154.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeC----CC---
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS----GN--- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i----~~--- 137 (273)
.++++|++++| ++..+ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++ ..
T Consensus 4 ~l~i~~ls~~y--~~~~~----L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~ 77 (359)
T 3fvq_A 4 ALHIGHLSKSF--QNTPV----LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77 (359)
T ss_dssp CEEEEEEEEEE--TTEEE----EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCG
T ss_pred EEEEEeEEEEE--CCEEE----EEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccch
Confidence 68999999999 55667 999999999999999999999999999999999999 999999999987 22
Q ss_pred CCccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-
Q 024032 138 SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 138 ~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~- 193 (273)
.++.++|++|++.+| +.+||+||..+ . .+++.++++.++ .+||||||||+ |+
T Consensus 78 ~~r~ig~vfQ~~~l~----p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL 153 (359)
T 3fvq_A 78 RERRLGYLVQEGVLF----PHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARAL 153 (359)
T ss_dssp GGSCCEEECTTCCCC----TTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred hhCCEEEEeCCCcCC----CCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 356799999998864 44599998422 1 345677788776 78999999987 44
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+.+|++|||||||++||+. ..++++.++.|+|+|+| .+||||++|++|+|++.|++++++..+.
T Consensus 154 ~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~ 231 (359)
T 3fvq_A 154 APDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPA 231 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcc
Confidence 7899999999999999999 22444555559999999 5689999999999999999999987654
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=333.69 Aligned_cols=181 Identities=18% Similarity=0.256 Sum_probs=154.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
.++++|++++| ++..+ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. .++.
T Consensus 3 ~l~~~~l~~~y--g~~~~----L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ 76 (381)
T 3rlf_A 3 SVQLQNVTKAW--GEVVV----SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG 76 (381)
T ss_dssp CEEEEEEEEEE--TTEEE----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSC
T ss_pred EEEEEeEEEEE--CCEEE----EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCC
Confidence 58999999999 55667 999999999999999999999999999999999999 99999999999864 3467
Q ss_pred EEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
+++++|++.++ +.+||+||.. .+. +++.++++.++ .+||||||||. |+ +.+|
T Consensus 77 ig~VfQ~~~l~----p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P 152 (381)
T 3rlf_A 77 VGMVFQSYALY----PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (381)
T ss_dssp EEEECTTCCCC----TTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred EEEEecCCcCC----CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCC
Confidence 99999999864 4459999843 232 34666777766 78999999987 44 7899
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
++|||||||++||+. ..++++.++.|+|+|+| .+||||++|++|++++.|++++++..|
T Consensus 153 ~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 999999999999999 34566665558999999 568999999999999999999998654
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=312.63 Aligned_cols=180 Identities=18% Similarity=0.225 Sum_probs=146.0
Q ss_pred ceEEEEEEEEeecCC--eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC----
Q 024032 66 LNELRHKFLSYRSGD--FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS---- 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~--~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~---- 138 (273)
+++++|++++|+.+. .++ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++...
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~----L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~ 76 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYA----LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDE 76 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEE----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHH
T ss_pred CEEEEEEEEEeCCCCcceee----EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHH
Confidence 378999999997543 346 999999999999999999999999999999999999 999999999998642
Q ss_pred -----CccEEEEeccchhhhccCCccccccccc----------CCH----HHHHHHHHHhc----------ccCCHHHHH
Q 024032 139 -----SHTITMYMEEHNVMRSLQSGFCVYDSRG----------FNY----NRVHEGLEELS----------SWMSEGVHH 189 (273)
Q Consensus 139 -----~~~i~~v~q~~~~~~~~~~~~tv~en~~----------~~~----~~~~~~l~~~~----------~~LSgGqkq 189 (273)
++.+++++|++.+ +..+||+||.. ... +++.++++.++ .+|||||||
T Consensus 77 ~~~~~~~~i~~v~Q~~~l----~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~Q 152 (235)
T 3tif_A 77 LTKIRRDKIGFVFQQFNL----IPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQ 152 (235)
T ss_dssp HHHHHHHHEEEECTTCCC----CTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHH
T ss_pred HHHHhhccEEEEecCCcc----CCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHH
Confidence 2359999999875 44559999831 222 33455666654 679999999
Q ss_pred HH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhh
Q 024032 190 NQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 190 ~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
|. |+ +.+|++|||||||+|||+. +.+++++++.|+|||+| .+||+|++|++|++++.++++++
T Consensus 153 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 87 33 8999999999999999999 34566655448999999 56899999999999999887765
Q ss_pred c
Q 024032 253 F 253 (273)
Q Consensus 253 ~ 253 (273)
.
T Consensus 233 ~ 233 (235)
T 3tif_A 233 D 233 (235)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-43 Score=313.08 Aligned_cols=186 Identities=16% Similarity=0.185 Sum_probs=153.2
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS------ 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~------ 138 (273)
+++++|++++| +++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...
T Consensus 7 ~l~i~~l~~~y--~~~~v----l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (257)
T 1g6h_A 7 ILRTENIVKYF--GEFKA----LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY 80 (257)
T ss_dssp EEEEEEEEEEE--TTEEE----EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred EEEEeeeEEEE--CCEee----EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 68999999999 45667 999999999999999999999999999999999999 999999999998542
Q ss_pred CccEEEEeccchhhhccCCccccccccc--------------------CC----HHHHHHHHHHhc---------ccCCH
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRG--------------------FN----YNRVHEGLEELS---------SWMSE 185 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~--------------------~~----~~~~~~~l~~~~---------~~LSg 185 (273)
++.+++++|++.+++ .+||+||.. .. .+++.++++.++ .+|||
T Consensus 81 ~~~i~~v~q~~~l~~----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 81 HYGIVRTFQTPQPLK----EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSG 156 (257)
T ss_dssp HHTEEECCCCCGGGG----GSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCH
T ss_pred hCCEEEEccCCccCC----CCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCH
Confidence 356999999987643 348888721 11 134566777766 68999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeec
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLD 247 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g 247 (273)
|||||. |+ +.+|++|||||||+|||+. +.++++.++ |+|||++ .+||++++|++|++++.|
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEEe
Confidence 999987 33 7999999999999999999 345666665 8999998 568999999999999999
Q ss_pred Chhh----hccChhhHHHh
Q 024032 248 ATKR----LFSAPGLRKCS 262 (273)
Q Consensus 248 ~~~~----l~~~~~l~~~~ 262 (273)
++++ +++++.+.+.|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~ 254 (257)
T 1g6h_A 236 RGEEEIKNVLSDPKVVEIY 254 (257)
T ss_dssp ESHHHHHHHHHCHHHHHTT
T ss_pred CHHHhhhhhhcCHHHHHHh
Confidence 9999 76655554443
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=308.36 Aligned_cols=187 Identities=14% Similarity=0.195 Sum_probs=153.3
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC-----
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS----- 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~----- 138 (273)
.+++++|++++| +++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...
T Consensus 5 ~~l~~~~l~~~y--~~~~v----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 78 (240)
T 1ji0_A 5 IVLEVQSLHVYY--GAIHA----IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78 (240)
T ss_dssp EEEEEEEEEEEE--TTEEE----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred ceEEEEeEEEEE--CCeeE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHH
Confidence 368999999999 44667 999999999999999999999999999999999999 999999999998542
Q ss_pred -CccEEEEeccchhhhccCCcccccccccC------C----HHHHHHHHHHh-c---------ccCCHHHHHHH---Hh-
Q 024032 139 -SHTITMYMEEHNVMRSLQSGFCVYDSRGF------N----YNRVHEGLEEL-S---------SWMSEGVHHNQ---RC- 193 (273)
Q Consensus 139 -~~~i~~v~q~~~~~~~~~~~~tv~en~~~------~----~~~~~~~l~~~-~---------~~LSgGqkq~~---r~- 193 (273)
++.++|++|++.+ +..+||+||..+ . .+.+.+.++.+ + .+||||||||. |+
T Consensus 79 ~~~~i~~v~q~~~l----~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL 154 (240)
T 1ji0_A 79 NRMGIALVPEGRRI----FPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp HHTTEEEECSSCCC----CTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred HhCCEEEEecCCcc----CCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHH
Confidence 3459999999875 345589888321 1 23345555555 2 68999999987 33
Q ss_pred cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhH
Q 024032 194 LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLR 259 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~ 259 (273)
+.+|++|||||||+|||+. +.++++.++ |+|||++ .+||++++|++|+++..|+++++++.+.+.
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 233 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE-GTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMVR 233 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCHHHH
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcCHHHH
Confidence 8999999999999999999 345666554 8999998 468999999999999999999998776665
Q ss_pred HHh
Q 024032 260 KCS 262 (273)
Q Consensus 260 ~~~ 262 (273)
+.|
T Consensus 234 ~~~ 236 (240)
T 1ji0_A 234 KAY 236 (240)
T ss_dssp HHH
T ss_pred HHh
Confidence 555
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-43 Score=314.15 Aligned_cols=181 Identities=17% Similarity=0.232 Sum_probs=151.9
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC--C----
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG--N---- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~--~---- 137 (273)
.+++++|++++| +++++ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++. .
T Consensus 23 ~~l~i~~l~~~y--~~~~v----L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 96 (263)
T 2olj_A 23 QMIDVHQLKKSF--GSLEV----LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96 (263)
T ss_dssp CSEEEEEEEEEE--TTEEE----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHH
T ss_pred heEEEEeEEEEE--CCEEE----EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHH
Confidence 369999999999 45667 999999999999999999999999999999999999 9999999999874 1
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc---------ccCCHHHHHHH---H
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS---------SWMSEGVHHNQ---R 192 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r 192 (273)
.++.++|++|++.+ +..+||+||..+ . .+++.++++.++ .+||||||||. |
T Consensus 97 ~~~~~i~~v~Q~~~l----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAr 172 (263)
T 2olj_A 97 KVREEVGMVFQRFNL----FPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIAR 172 (263)
T ss_dssp HHHHHEEEECSSCCC----CTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred HHhCcEEEEeCCCcC----CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHH
Confidence 24569999999775 445589888321 2 234566777776 68999999987 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+ +.+|++|||||||++||+. +.++++.++ |+|||++ .+||++++|++|++++.|++++++..+
T Consensus 173 aL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 173 ALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 3 8999999999999999999 345666666 8999999 468999999999999999999997654
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=315.01 Aligned_cols=196 Identities=18% Similarity=0.157 Sum_probs=160.5
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC--C----
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG--N---- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~--~---- 137 (273)
.+++++|++++| +++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++. .
T Consensus 20 ~~l~~~~l~~~y--~~~~v----L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 93 (279)
T 2ihy_A 20 MLIQLDQIGRMK--QGKTI----LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAE 93 (279)
T ss_dssp EEEEEEEEEEEE--TTEEE----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHH
T ss_pred ceEEEEeEEEEE--CCEEE----EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHH
Confidence 369999999999 45667 999999999999999999999999999999999999 9999999999875 2
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccC------------C---HHHHHHHHHHhc---------ccCCHHHHHHH-
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGF------------N---YNRVHEGLEELS---------SWMSEGVHHNQ- 191 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~------------~---~~~~~~~l~~~~---------~~LSgGqkq~~- 191 (273)
.++.+++++|++..+ +...+||+||..+ . .+++.++++.++ .+||||||||.
T Consensus 94 ~~~~~i~~v~Q~~~~~--~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~ 171 (279)
T 2ihy_A 94 TVRQHIGFVSHSLLEK--FQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVM 171 (279)
T ss_dssp HHHTTEEEECHHHHTT--SCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred HHcCcEEEEEcCcccc--cCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH
Confidence 356799999987642 1223589888422 1 134566677766 68999999987
Q ss_pred --Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEE--EEc--------eeCCEEEEEeCCeEeeecChhhh
Q 024032 192 --RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAM--VVS--------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 192 --r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~ti--iiv--------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
|+ +.+|++|||||||+|||+. +.++++.++ |+|| |++ .+||++++|++|++++.|+++++
T Consensus 172 lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 33 7999999999999999999 345666666 8888 888 46899999999999999999999
Q ss_pred ccChhhHHHhCCceEEE
Q 024032 253 FSAPGLRKCSKISFCIL 269 (273)
Q Consensus 253 ~~~~~l~~~~~~~~~~~ 269 (273)
++.+.+...|+.+..+.
T Consensus 251 ~~~~~~~~~~~~~~~~~ 267 (279)
T 2ihy_A 251 LTSENMSRFFQKNVAVQ 267 (279)
T ss_dssp CSHHHHHHHHTSCEEEE
T ss_pred hccHHHHHHhCCcceee
Confidence 88777888888765543
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=309.11 Aligned_cols=189 Identities=15% Similarity=0.145 Sum_probs=155.8
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----C
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----S 138 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~ 138 (273)
.+.++++|++++| +++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. .
T Consensus 13 ~~~l~i~~l~~~y--~~~~v----l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~ 86 (256)
T 1vpl_A 13 MGAVVVKDLRKRI--GKKEI----LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEV 86 (256)
T ss_dssp -CCEEEEEEEEEE--TTEEE----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHH
T ss_pred CCeEEEEEEEEEE--CCEEE----EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHH
Confidence 3579999999999 45667 999999999999999999999999999999999999 99999999998753 3
Q ss_pred CccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-c
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l 194 (273)
++.++|++|++.+ +..+||+||.. ... +++.++++.++ .+||||||||. |+ +
T Consensus 87 ~~~i~~v~q~~~l----~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~ 162 (256)
T 1vpl_A 87 RKLISYLPEEAGA----YRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALM 162 (256)
T ss_dssp HTTEEEECTTCCC----CTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred hhcEEEEcCCCCC----CCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 4679999999875 44569999832 122 34667777776 67999999987 33 8
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc---Chh
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS---APG 257 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~---~~~ 257 (273)
.+|++|||||||+|||+. +.++++.++ |+|||++ .+||++++|++|+++..|+++++.+ ...
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 241 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQE-GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 241 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTCSS
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHhcchhh
Confidence 999999999999999999 345666554 8999998 4689999999999999999999863 334
Q ss_pred hHHHhC
Q 024032 258 LRKCSK 263 (273)
Q Consensus 258 l~~~~~ 263 (273)
+.+.|.
T Consensus 242 l~~~~~ 247 (256)
T 1vpl_A 242 IEEVFE 247 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 566554
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=323.98 Aligned_cols=189 Identities=14% Similarity=0.216 Sum_probs=157.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
.++++|++++| +++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. .++.
T Consensus 3 ~l~~~~l~~~y--~~~~v----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ 76 (359)
T 2yyz_A 3 SIRVVNLKKYF--GKVKA----VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYRE 76 (359)
T ss_dssp CEEEEEEEEEE--TTEEE----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTT
T ss_pred EEEEEEEEEEE--CCEEE----EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCc
Confidence 58999999999 45667 999999999999999999999999999999999999 99999999999864 3467
Q ss_pred EEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
++|++|++.+++ .+||+||..+ + .+++.++++.++ .+||||||||. |+ +.+|
T Consensus 77 ig~v~Q~~~l~~----~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P 152 (359)
T 2yyz_A 77 VGMVFQNYALYP----HMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQP 152 (359)
T ss_dssp EEEECSSCCCCT----TSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEecCcccCC----CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999999988644 4599998422 1 235677788776 68999999987 34 8999
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh---hHH
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG---LRK 260 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~---l~~ 260 (273)
++|||||||++||+. +.++++.++.|.|+|++ .+||+|++|++|++++.|++++++..+. ...
T Consensus 153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~ 232 (359)
T 2yyz_A 153 KVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVAS 232 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHHHH
Confidence 999999999999999 33556655458999999 4689999999999999999999987653 334
Q ss_pred HhCC
Q 024032 261 CSKI 264 (273)
Q Consensus 261 ~~~~ 264 (273)
.++.
T Consensus 233 ~~g~ 236 (359)
T 2yyz_A 233 FIGN 236 (359)
T ss_dssp HSSS
T ss_pred HhCC
Confidence 4554
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=312.23 Aligned_cols=180 Identities=17% Similarity=0.204 Sum_probs=150.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
+++++|++++| +++++ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 6 ~l~i~~l~~~y--~~~~v----l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 79 (262)
T 1b0u_A 6 KLHVIDLHKRY--GGHEV----LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 79 (262)
T ss_dssp CEEEEEEEEEE--TTEEE----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSS
T ss_pred eEEEeeEEEEE--CCEEE----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccc
Confidence 69999999999 45667 999999999999999999999999999999999999 99999999998751
Q ss_pred -----------CCccEEEEeccchhhhccCCcccccccccC--------C----HHHHHHHHHHhc----------ccCC
Q 024032 138 -----------SSHTITMYMEEHNVMRSLQSGFCVYDSRGF--------N----YNRVHEGLEELS----------SWMS 184 (273)
Q Consensus 138 -----------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--------~----~~~~~~~l~~~~----------~~LS 184 (273)
.++.+++++|++.+ +..+||+||..+ . .+++.++++.++ .+||
T Consensus 80 ~~~~~~~~~~~~~~~i~~v~Q~~~l----~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS 155 (262)
T 1b0u_A 80 LKVADKNQLRLLRTRLTMVFQHFNL----WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLS 155 (262)
T ss_dssp EEESCHHHHHHHHHHEEEECSSCCC----CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSC
T ss_pred ccccChhhHHHHhcceEEEecCccc----CCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCC
Confidence 24569999999765 445589888321 2 234556666654 5799
Q ss_pred HHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
||||||. |+ +.+|++|||||||+|||+. +.++++.++ |+|||++ .+||++++|++|++++.
T Consensus 156 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (262)
T 1b0u_A 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 234 (262)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999987 33 7999999999999999999 345666665 8999998 46899999999999999
Q ss_pred cChhhhccCh
Q 024032 247 DATKRLFSAP 256 (273)
Q Consensus 247 g~~~~l~~~~ 256 (273)
|+++++++++
T Consensus 235 g~~~~~~~~~ 244 (262)
T 1b0u_A 235 GDPEQVFGNP 244 (262)
T ss_dssp ECHHHHHHSC
T ss_pred CCHHHHHhCc
Confidence 9999998654
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-43 Score=325.14 Aligned_cols=185 Identities=18% Similarity=0.246 Sum_probs=154.8
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CC
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SS 139 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~ 139 (273)
...++++|++++|. +++++ |+++||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++.. .+
T Consensus 12 ~~~l~~~~l~~~y~-g~~~v----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~ 86 (355)
T 1z47_A 12 SMTIEFVGVEKIYP-GGARS----VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK 86 (355)
T ss_dssp CEEEEEEEEEECCT-TSTTC----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGG
T ss_pred CceEEEEEEEEEEc-CCCEE----EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhh
Confidence 34799999999983 33445 999999999999999999999999999999999999 99999999999853 45
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~ 195 (273)
+.++|++|++.++ ..+||+||..+ + .+++.++++.++ .+||||||||. |+ +.
T Consensus 87 r~ig~v~Q~~~l~----~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~ 162 (355)
T 1z47_A 87 RNVGLVFQNYALF----QHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAP 162 (355)
T ss_dssp SSEEEECGGGCCC----TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred CcEEEEecCcccC----CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 6799999998764 44599998422 2 234667777776 68999999987 34 79
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+|++|||||||++||+. +.++++.++.|+|+|+| .+||+|++|++|++++.|++++++..+.
T Consensus 163 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 238 (355)
T 1z47_A 163 RPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPG 238 (355)
T ss_dssp CCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999 34556655558999998 5689999999999999999999987653
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=324.03 Aligned_cols=189 Identities=17% Similarity=0.269 Sum_probs=157.3
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
.++++|++++| +++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. .++.
T Consensus 3 ~l~~~~l~~~y--~~~~v----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ 76 (362)
T 2it1_A 3 EIKLENIVKKF--GNFTA----LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRN 76 (362)
T ss_dssp CEEEEEEEEES--SSSEE----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTT
T ss_pred EEEEEeEEEEE--CCEEE----EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCc
Confidence 58999999998 45567 999999999999999999999999999999999999 99999999999854 3467
Q ss_pred EEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
++|++|++.+| ..+||+||..+ . .+++.++++.++ .+||||||||. |+ +.+|
T Consensus 77 ig~v~Q~~~l~----~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 152 (362)
T 2it1_A 77 VGLVFQNWALY----PHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEP 152 (362)
T ss_dssp EEEECTTCCCC----TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEecCcccC----CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999998864 44599998422 2 234667777776 68999999987 34 7999
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh---hHH
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG---LRK 260 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~---l~~ 260 (273)
++|||||||++||+. +.++++.++.|+|+|+| .+||+|++|++|++++.|++++++..+. ...
T Consensus 153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~~~ 232 (362)
T 2it1_A 153 EVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGG 232 (362)
T ss_dssp SEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHHHH
Confidence 999999999999999 34566655458999999 5689999999999999999999987653 334
Q ss_pred HhCC
Q 024032 261 CSKI 264 (273)
Q Consensus 261 ~~~~ 264 (273)
.++.
T Consensus 233 ~~g~ 236 (362)
T 2it1_A 233 FLGN 236 (362)
T ss_dssp HSBT
T ss_pred HcCC
Confidence 4554
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-42 Score=301.76 Aligned_cols=172 Identities=13% Similarity=0.090 Sum_probs=144.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS------ 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~------ 138 (273)
+++++|++++| +++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...
T Consensus 4 ~l~~~~l~~~y--~~~~~----l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 77 (224)
T 2pcj_A 4 ILRAENIKKVI--RGYEI----LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELS 77 (224)
T ss_dssp EEEEEEEEEEE--TTEEE----EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHH
T ss_pred EEEEEeEEEEE--CCEee----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHH
Confidence 68999999999 44667 999999999999999999999999999999999999 999999999998542
Q ss_pred ---CccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---H
Q 024032 139 ---SHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---R 192 (273)
Q Consensus 139 ---~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r 192 (273)
++.++|++|++.+ +..+||+||..+ . .+++.++++.++ .+||||||||. |
T Consensus 78 ~~~~~~i~~v~q~~~l----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 78 LLRNRKLGFVFQFHYL----IPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp HHHHHHEEEECSSCCC----CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred HHHhCcEEEEecCccc----CCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHH
Confidence 2569999999875 445699998321 1 234566777776 68999999987 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecC
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDA 248 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~ 248 (273)
+ +.+|++|||||||++||+. +.++++.++ |.|||++ .+||++++|++|++++.|+
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 154 ALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 3 7899999999999999999 345666666 8999999 4689999999999998875
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=322.71 Aligned_cols=181 Identities=14% Similarity=0.253 Sum_probs=154.2
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
+++++|++++|. ++ + |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. .++.
T Consensus 1 ml~~~~l~~~y~--~~-~----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ 73 (348)
T 3d31_A 1 MIEIESLSRKWK--NF-S----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHD 73 (348)
T ss_dssp CEEEEEEEEECS--SC-E----EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHT
T ss_pred CEEEEEEEEEEC--CE-E----EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCc
Confidence 378999999993 44 7 999999999999999999999999999999999999 99999999999864 3467
Q ss_pred EEEEeccchhhhccCCcccccccccC--------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF--------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~--------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
++|++|++.+|+ .+||+||..+ ..+++.++++.++ .+||||||||. |+ +.+|++|
T Consensus 74 ig~v~Q~~~l~~----~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lL 149 (348)
T 3d31_A 74 IAFVYQNYSLFP----HMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKIL 149 (348)
T ss_dssp CEEECTTCCCCT----TSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred EEEEecCcccCC----CCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999988644 4599998432 1256777888876 68999999987 44 7899999
Q ss_pred EEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 201 LMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 201 lLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
||||||++||+. +.++++.++.|+|+|++ .+||+|++|++|++++.|++++++..+.
T Consensus 150 LLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~ 220 (348)
T 3d31_A 150 LLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPV 220 (348)
T ss_dssp EEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCC
T ss_pred EEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcc
Confidence 999999999999 34566665558999999 5689999999999999999999987654
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=323.51 Aligned_cols=189 Identities=18% Similarity=0.279 Sum_probs=153.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
.++++|++++| +++++ |+++||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++.. .++.
T Consensus 11 ~l~~~~l~~~y--~~~~v----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ 84 (372)
T 1v43_A 11 EVKLENLTKRF--GNFTA----VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN 84 (372)
T ss_dssp CEEEEEEEEEE--TTEEE----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGT
T ss_pred eEEEEEEEEEE--CCEEE----EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCc
Confidence 59999999999 45667 999999999999999999999999999999999999 99999999999864 3467
Q ss_pred EEEEeccchhhhccCCcccccccccC-------CH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF-------NY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~-------~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
++|++|++.+|+ .+||+||..+ .. +++.++++.++ .+||||||||. |+ +.+|
T Consensus 85 ig~v~Q~~~l~~----~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 160 (372)
T 1v43_A 85 ISMVFQSYAVWP----HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEP 160 (372)
T ss_dssp EEEEEC----------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCC
T ss_pred EEEEecCcccCC----CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999988654 4599998432 22 34667777776 68999999987 34 7999
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh---hHH
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG---LRK 260 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~---l~~ 260 (273)
++|||||||++||+. +.++++.++.|.|+|++ .+||+|++|++|++++.|++++++..+. ...
T Consensus 161 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~a~ 240 (372)
T 1v43_A 161 DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVAT 240 (372)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHHH
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHHHH
Confidence 999999999999999 34556655558999999 5689999999999999999999987653 333
Q ss_pred HhCC
Q 024032 261 CSKI 264 (273)
Q Consensus 261 ~~~~ 264 (273)
.++.
T Consensus 241 ~~g~ 244 (372)
T 1v43_A 241 FIGA 244 (372)
T ss_dssp HSSS
T ss_pred HhCC
Confidence 4454
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-42 Score=304.37 Aligned_cols=179 Identities=16% Similarity=0.207 Sum_probs=149.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
.++++|++++|..+++.+ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++.. .+
T Consensus 7 ~~~~~~l~~~y~~~~~~v----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 82 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVI----LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 82 (247)
T ss_dssp EEEEEEEEEESSTTSCEE----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred ceeEEEEEEEeCCCCcce----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHH
Confidence 689999999995334567 999999999999999999999999999999999999 99999999999864 34
Q ss_pred ccEEEEeccchhhhccCCcccccccccC-----CHHHHHHHHHHhc--------------------ccCCHHHHHHH---
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHEGLEELS--------------------SWMSEGVHHNQ--- 191 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~~l~~~~--------------------~~LSgGqkq~~--- 191 (273)
+.++|++|++.++ ..||+||..+ ..+++.++++.++ .+||||||||.
T Consensus 83 ~~i~~v~Q~~~l~-----~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iA 157 (247)
T 2ff7_A 83 RQVGVVLQDNVLL-----NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIA 157 (247)
T ss_dssp HHEEEECSSCCCT-----TSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHH
T ss_pred hcEEEEeCCCccc-----cccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHH
Confidence 5799999998743 3499998432 3455555555543 47999999987
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|+ +++|++|||||||++||+. +.++++. + |+|||++ ..||++++|++|++++.|++++++..
T Consensus 158 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 158 RALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-K-GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp HHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T-TSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTS
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 33 8999999999999999999 3355553 4 8999998 34899999999999999999999865
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=322.86 Aligned_cols=182 Identities=16% Similarity=0.229 Sum_probs=153.0
Q ss_pred ceEEEEEEEEeecCCee--eeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----
Q 024032 66 LNELRHKFLSYRSGDFW--IPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~--v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----- 137 (273)
+++++|++++|. +++ + |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 3 ~l~i~~l~~~y~--~~~~~v----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~ 76 (353)
T 1oxx_K 3 RIIVKNVSKVFK--KGKVVA----LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76 (353)
T ss_dssp CEEEEEEEEEEG--GGTEEE----EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEES
T ss_pred EEEEEeEEEEEC--CEeeee----EeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECccccccc
Confidence 589999999994 344 6 999999999999999999999999999999999999 99999999988632
Q ss_pred ---CCccEEEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---
Q 024032 138 ---SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ--- 191 (273)
Q Consensus 138 ---~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~--- 191 (273)
.++.++|++|++.+++ .+||+||..+ + .+++.++++.++ .+||||||||.
T Consensus 77 ~~~~~r~ig~v~Q~~~l~~----~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 77 VPPEDRKIGMVFQTWALYP----NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp SCGGGSCEEEEETTSCCCT----TSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred CChhhCCEEEEeCCCccCC----CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 3567999999988644 4599998322 2 235667777776 68999999987
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
|+ +.+|++|||||||++||+. +.++++.++.|+|+|+| .+||+|++|++|++++.|++++++..+
T Consensus 153 raL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 232 (353)
T 1oxx_K 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232 (353)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 34 7999999999999999999 34556655458999999 468999999999999999999998765
Q ss_pred h
Q 024032 257 G 257 (273)
Q Consensus 257 ~ 257 (273)
.
T Consensus 233 ~ 233 (353)
T 1oxx_K 233 V 233 (353)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-42 Score=322.38 Aligned_cols=182 Identities=17% Similarity=0.283 Sum_probs=153.5
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
.++++|++++| +++++ |+++||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y--~~~~v----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~ 76 (372)
T 1g29_1 3 GVRLVDVWKVF--GEVTA----VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76 (372)
T ss_dssp EEEEEEEEEEE--TTEEE----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEEC
T ss_pred EEEEEeEEEEE--CCEEE----EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccC
Confidence 58999999999 45667 999999999999999999999999999999999999 99999999988643
Q ss_pred --CCccEEEEeccchhhhccCCccccccccc-------CCH----HHHHHHHHHhc---------ccCCHHHHHHH---H
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FNY----NRVHEGLEELS---------SWMSEGVHHNQ---R 192 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r 192 (273)
.++.++|++|++.+|+ .+||+||.. ... +++.++++.++ .+||||||||. |
T Consensus 77 ~~~~r~ig~v~Q~~~l~~----~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr 152 (372)
T 1g29_1 77 PPKDRDIAMVFQSYALYP----HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGR 152 (372)
T ss_dssp CGGGSSEEEECSCCCCCT----TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred CHhHCCEEEEeCCCccCC----CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHH
Confidence 3467999999988644 459999842 222 34667777776 68999999987 3
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+ +.+|++|||||||++||+. +.++++.++.|.|+|+| .+||+|++|++|++++.|++++++..+.
T Consensus 153 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 232 (372)
T 1g29_1 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPA 232 (372)
T ss_dssp HHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcc
Confidence 3 7999999999999999999 33556655458999999 4689999999999999999999987653
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-42 Score=337.75 Aligned_cols=224 Identities=16% Similarity=0.174 Sum_probs=179.4
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchhhhc--------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcE
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMERLAL--------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVIT 100 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~ 100 (273)
+..+...-..++++..+.+|+.++++.++... ....+.++++|++|+|+.++.++ |+|+||++++||+
T Consensus 294 l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~----l~~isl~i~~G~~ 369 (578)
T 4a82_A 294 LRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPI----LKDINLSIEKGET 369 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSCCS----EEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCCCcc----eeeeEEEECCCCE
Confidence 34455556677889999999999988654311 11235699999999997655566 9999999999999
Q ss_pred EEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc-----CCH
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-----FNY 169 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-----~~~ 169 (273)
+||+||||||||||+++|+|+++ ++|+|.++|+++.+ +++++++++|++.+ +..||+||.. ...
T Consensus 370 ~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l-----~~~tv~eni~~~~~~~~~ 444 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNIL-----FSDTVKENILLGRPTATD 444 (578)
T ss_dssp EEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCC-----CSSBHHHHHGGGCSSCCH
T ss_pred EEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCcc-----CcccHHHHHhcCCCCCCH
Confidence 99999999999999999999999 99999999999864 45789999999874 4459999942 345
Q ss_pred HHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHH
Q 024032 170 NRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVL 219 (273)
Q Consensus 170 ~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~ 219 (273)
+++.++++.++ .+||||||||. |+ +++|++|||||||++||+. +.++++.
T Consensus 445 ~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 524 (578)
T 4a82_A 445 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS 524 (578)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc
Confidence 66666666553 47999999987 44 7899999999999999999 2234443
Q ss_pred hcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh-hhHHHhC
Q 024032 220 RRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP-GLRKCSK 263 (273)
Q Consensus 220 ~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~-~l~~~~~ 263 (273)
+ ++|+|+| ..||+|++|++|++++.|+++++++.+ .+.+.|.
T Consensus 525 ~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~ 574 (578)
T 4a82_A 525 K--DRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYS 574 (578)
T ss_dssp T--TSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHT
T ss_pred C--CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 3 7898888 458999999999999999999998654 3555553
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-42 Score=337.84 Aligned_cols=221 Identities=14% Similarity=0.124 Sum_probs=176.1
Q ss_pred hhhhhccchhhhhhhhHHHHHHHhchhhh--------ccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEE
Q 024032 31 ECVKLKLDLPNVSTLTPRLRVLREMERLA--------LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITIL 102 (273)
Q Consensus 31 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~a 102 (273)
.+...-..++++..+.+|+.++++.++.. .....+.++++|++|+|+.+++++ |+|+||++++||++|
T Consensus 298 ~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~----l~~isl~i~~Ge~~~ 373 (587)
T 3qf4_A 298 MIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPV----LSGVNFSVKPGSLVA 373 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSSCCS----EEEEEEEECTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCCCcc----eeceEEEEcCCCEEE
Confidence 34444456778899999999998765321 111245799999999997655666 999999999999999
Q ss_pred EEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc-----CCHHH
Q 024032 103 LMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-----FNYNR 171 (273)
Q Consensus 103 ivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-----~~~~~ 171 (273)
|+||||||||||+++|+|+++ ++|+|.++|+++.+ +++++++++|++.+ +..||+||.. .+.++
T Consensus 374 ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-----f~~tv~eni~~~~~~~~~~~ 448 (587)
T 3qf4_A 374 VLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVL-----FSGTIKENLKWGREDATDDE 448 (587)
T ss_dssp EECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCC-----CSEEHHHHHTTTCSSCCHHH
T ss_pred EECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcC-----cCccHHHHHhccCCCCCHHH
Confidence 999999999999999999999 99999999999864 46789999999874 4559999943 34556
Q ss_pred HHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhc
Q 024032 172 VHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRR 221 (273)
Q Consensus 172 ~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~ 221 (273)
+.++++.++ .+||||||||. |+ +++|++|||||||++||+. +.++++. +
T Consensus 449 ~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~ 527 (587)
T 3qf4_A 449 IVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-K 527 (587)
T ss_dssp HHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-C
Confidence 666555432 57999999987 44 8999999999999999999 2234443 3
Q ss_pred CCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh-hhHHHh
Q 024032 222 VDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP-GLRKCS 262 (273)
Q Consensus 222 ~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~-~l~~~~ 262 (273)
|+|+|+| ..||+|++|++|++++.|+++++++.. .+.+.|
T Consensus 528 -~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 575 (587)
T 3qf4_A 528 -GCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIY 575 (587)
T ss_dssp -TCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred -CCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHH
Confidence 8999998 568999999999999999999998643 344433
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-41 Score=300.47 Aligned_cols=186 Identities=16% Similarity=0.208 Sum_probs=154.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
+++++|++++|.. ++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|. .++.++|
T Consensus 4 ~l~i~~l~~~y~~-~~~v----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~--------~~~~i~~ 70 (253)
T 2nq2_C 4 ALSVENLGFYYQA-ENFL----FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE--------VYQSIGF 70 (253)
T ss_dssp EEEEEEEEEEETT-TTEE----EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE--------ECSCEEE
T ss_pred eEEEeeEEEEeCC-CCeE----EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE--------EeccEEE
Confidence 5899999999941 4567 999999999999999999999999999999999999 999998 2467999
Q ss_pred EeccchhhhccCCcccccccccC------------C---HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCC
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGF------------N---YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~------------~---~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~ 196 (273)
++|++.+ ++.+||+||..+ . .+++.++++.++ .+||||||||. |+ +.+
T Consensus 71 v~q~~~~----~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 146 (253)
T 2nq2_C 71 VPQFFSS----PFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASE 146 (253)
T ss_dssp ECSCCCC----SSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTT
T ss_pred EcCCCcc----CCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999875 345688887311 1 234667777776 68999999987 33 799
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHHHh
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRKCS 262 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~~~ 262 (273)
|++|||||||+|||+. +.++++.++.|.|||++ .+||++++|++|+ ++.|++++++..+.+.+.|
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~~~~~~~~~ 225 (253)
T 2nq2_C 147 CKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILTSENLTALF 225 (253)
T ss_dssp CSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCCHHHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhCcHHHHHHh
Confidence 9999999999999999 34556655448999998 4689999999999 9999999998777788889
Q ss_pred CCceEEE
Q 024032 263 KISFCIL 269 (273)
Q Consensus 263 ~~~~~~~ 269 (273)
+.++.+.
T Consensus 226 ~~~~~~~ 232 (253)
T 2nq2_C 226 HLPMFEQ 232 (253)
T ss_dssp TSCEEEE
T ss_pred CCCceEE
Confidence 8876543
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=332.84 Aligned_cols=219 Identities=14% Similarity=0.210 Sum_probs=176.4
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEE
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
.+..+...-..++++..+.+|+.++++.++... ....+.++++|++|+|+.+++++ |+|+||++++||++
T Consensus 297 pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~----l~~i~l~i~~G~~~ 372 (582)
T 3b5x_A 297 PLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPA----LSHVSFSIPQGKTV 372 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEEEEEEEcCCCCccc----cccceEEECCCCEE
Confidence 344555666777889999999999987654211 11135799999999996433556 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc------CCH
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG------FNY 169 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~------~~~ 169 (273)
||+||||||||||+|+|+|+++ ++|+|.++|+++.+ +++++++++|++.+| ..|++||.. .+.
T Consensus 373 ~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~-----~~tv~eni~~~~~~~~~~ 447 (582)
T 3b5x_A 373 ALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLF-----NDTIANNIAYAAEGEYTR 447 (582)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccc-----cccHHHHHhccCCCCCCH
Confidence 9999999999999999999999 99999999998853 467899999998753 359999842 345
Q ss_pred HHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHH
Q 024032 170 NRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVL 219 (273)
Q Consensus 170 ~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~ 219 (273)
++++++++.++ .+||||||||. |+ +++|++|||||||++||+. +.++++.
T Consensus 448 ~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 527 (582)
T 3b5x_A 448 EQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ 527 (582)
T ss_pred HHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc
Confidence 66777776654 47999999987 44 8999999999999999999 2344443
Q ss_pred hcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 220 RRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 220 ~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+ |+|+|++ ..||+|++|++|++++.|+++++++.+.
T Consensus 528 -~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 570 (582)
T 3b5x_A 528 -K-NKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDG 570 (582)
T ss_pred -C-CCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCc
Confidence 3 8899988 4589999999999999999999986543
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=301.43 Aligned_cols=187 Identities=15% Similarity=0.168 Sum_probs=153.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
+++++|++++|. +++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. .+
T Consensus 1 ml~~~~l~~~y~-~~~~v----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T 1mv5_A 1 MLSARHVDFAYD-DSEQI----LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWR 75 (243)
T ss_dssp CEEEEEEEECSS-SSSCS----EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCT
T ss_pred CEEEEEEEEEeC-CCCce----EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHH
Confidence 378999999984 34556 999999999999999999999999999999999999 99999999998753 45
Q ss_pred ccEEEEeccchhhhccCCcccccccccC------CHHHHHHHHHHhc--------------------ccCCHHHHHHH--
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF------NYNRVHEGLEELS--------------------SWMSEGVHHNQ-- 191 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~------~~~~~~~~l~~~~--------------------~~LSgGqkq~~-- 191 (273)
+.+++++|++.+ +..||+||..+ ..+++.++++.++ .+||||||||.
T Consensus 76 ~~i~~v~q~~~l-----~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~l 150 (243)
T 1mv5_A 76 SQIGFVSQDSAI-----MAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAI 150 (243)
T ss_dssp TTCCEECCSSCC-----CCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHH
T ss_pred hhEEEEcCCCcc-----ccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHH
Confidence 679999999864 33599998432 3456677777654 37999999987
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
|+ +++|++|||||||++||+. +.++++. + |+|||++ ..||++++|++|++++.|++++++...
T Consensus 151 Aral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 228 (243)
T 1mv5_A 151 ARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH 228 (243)
T ss_dssp HHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHC
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhcc
Confidence 33 7899999999999999999 4456665 4 8999999 348999999999999999999987543
Q ss_pred -hhHHHhCC
Q 024032 257 -GLRKCSKI 264 (273)
Q Consensus 257 -~l~~~~~~ 264 (273)
.+...|+.
T Consensus 229 ~~~~~~~~~ 237 (243)
T 1mv5_A 229 PLYAKYVSE 237 (243)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 34555543
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-42 Score=302.41 Aligned_cols=178 Identities=19% Similarity=0.234 Sum_probs=147.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
+++++|++++|. + + |+++||+|++ |++||+||||||||||+|+|+|+++ ++|+|.++|+++.. .++.
T Consensus 1 ml~~~~l~~~y~--~--~----l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 71 (240)
T 2onk_A 1 MFLKVRAEKRLG--N--F----RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRG 71 (240)
T ss_dssp CCEEEEEEEEET--T--E----EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSC
T ss_pred CEEEEEEEEEeC--C--E----EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCc
Confidence 378999999993 2 4 9999999999 9999999999999999999999999 99999999998753 4567
Q ss_pred EEEEeccchhhhccCCcccccccccC---------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCE
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRGF---------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDC 199 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~~---------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~i 199 (273)
++|++|++.+ +..+||+||..+ ..+++.++++.++ .+||||||||. |+ +.+|++
T Consensus 72 i~~v~q~~~l----~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 147 (240)
T 2onk_A 72 IGFVPQDYAL----FPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRL 147 (240)
T ss_dssp CBCCCSSCCC----CTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS
T ss_pred EEEEcCCCcc----CCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 9999999875 445599998422 1234666777766 68999999987 33 899999
Q ss_pred EEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 200 ALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 200 LlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
|||||||+|||+. +.++++.++.|+|||++ .+||++++|++|++++.|+++++++.+
T Consensus 148 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 148 LLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp BEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 9999999999999 34556654348899998 468999999999999999999987554
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-41 Score=302.07 Aligned_cols=182 Identities=15% Similarity=0.144 Sum_probs=150.0
Q ss_pred ceEEEEEEEEeecCC---eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--CC
Q 024032 66 LNELRHKFLSYRSGD---FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN--SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~---~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~--~~ 139 (273)
+++++|++++|..++ +++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. .+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~v----l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~ 77 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKA----LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIR 77 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEE----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHG
T ss_pred EEEEEEEEEEecCCCccccce----eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhh
Confidence 488999999995223 567 999999999999999999999999999999999999 99999999998753 45
Q ss_pred ccEEEEeccchhhhccCCcccccccccC----------CHHHHHHHHHHhc-----------ccCCHHHHHHH---Hh-c
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF----------NYNRVHEGLEELS-----------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~----------~~~~~~~~l~~~~-----------~~LSgGqkq~~---r~-l 194 (273)
+.++|++|++.. .++.+||+||..+ ..+++.++++.++ .+||||||||. |+ +
T Consensus 78 ~~i~~v~q~~~~---~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~ 154 (266)
T 2yz2_A 78 RNIGIAFQYPED---QFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIV 154 (266)
T ss_dssp GGEEEECSSGGG---GCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred hhEEEEeccchh---hcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHH
Confidence 679999998632 1455688887321 1345666777654 46999999987 33 8
Q ss_pred CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 195 RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
.+|++|||||||+|||+. +.++++.++ |.|||++ .+||++++|++|+++..|++++++..
T Consensus 155 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 155 HEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999 345666655 8999998 46899999999999999999988754
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=332.73 Aligned_cols=217 Identities=15% Similarity=0.191 Sum_probs=175.5
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEE
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
.+..+...-..++++..+.+|+.++++.++... ....+.++++|++|+|+.+++++ |+|+||++++||++
T Consensus 297 pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~----l~~v~~~i~~G~~~ 372 (582)
T 3b60_A 297 PLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPA----LRNINLKIPAGKTV 372 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEEEEEEECSSSSSCCS----EEEEEEEECTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCcEEEEEEEEEcCCCCCcc----ccceeEEEcCCCEE
Confidence 344555666777889999999999988654311 11235799999999996433556 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc------CCH
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG------FNY 169 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~------~~~ 169 (273)
||+||||||||||+++|+|+++ ++|+|.++|+++.+ +++++++++|++.+ +..||+||.. .+.
T Consensus 373 ~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l-----~~~tv~eni~~~~~~~~~~ 447 (582)
T 3b60_A 373 ALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHL-----FNDTVANNIAYARTEEYSR 447 (582)
T ss_dssp EEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCC-----CSSBHHHHHHTTTTSCCCH
T ss_pred EEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcC-----CCCCHHHHHhccCCCCCCH
Confidence 9999999999999999999999 99999999999864 45679999999874 3459999832 345
Q ss_pred HHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHH
Q 024032 170 NRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVL 219 (273)
Q Consensus 170 ~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~ 219 (273)
++++++++.++ .+||||||||. |+ +++|++|||||||++||+. +.++++.
T Consensus 448 ~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 527 (582)
T 3b60_A 448 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ 527 (582)
T ss_dssp HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh
Confidence 66777766553 47999999987 44 7999999999999999999 3345554
Q ss_pred hcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 220 RRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 220 ~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
+ |+|+|++ ..||+|++|++|++++.|+++++++.
T Consensus 528 ~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 528 K--NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp T--TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred C--CCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHc
Confidence 3 8899888 45899999999999999999999754
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-42 Score=362.88 Aligned_cols=217 Identities=15% Similarity=0.162 Sum_probs=177.6
Q ss_pred hhhhccchhhhhhhhHHHHHHHhchhhh--------ccCCCCceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcEEE
Q 024032 32 CVKLKLDLPNVSTLTPRLRVLREMERLA--------LIAPDGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITIL 102 (273)
Q Consensus 32 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------~~~~~~~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~~a 102 (273)
+......+..+..+.+|+.++++.++.. ..+..+.|+++||+|+|+.+ +.+| |+|+||+|++||.+|
T Consensus 1034 ~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~V----L~~isl~I~~Ge~va 1109 (1321)
T 4f4c_A 1034 ATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEI----LKGLSFSVEPGQTLA 1109 (1321)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCS----EEEEEEEECTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCcc----ccceeEEECCCCEEE
Confidence 3334455677888899999998755321 11224579999999999753 3456 999999999999999
Q ss_pred EEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-------cCCH
Q 024032 103 LMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-------GFNY 169 (273)
Q Consensus 103 ivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-------~~~~ 169 (273)
||||||||||||+++|.|+++ ++|+|.+||.|+++ +|+++++|+|++.+ |..|++||. ..++
T Consensus 1110 IVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~L-----F~gTIreNI~~gld~~~~sd 1184 (1321)
T 4f4c_A 1110 LVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTL-----FDCSIAENIIYGLDPSSVTM 1184 (1321)
T ss_dssp EECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCC-----CSEEHHHHHSSSSCTTTSCH
T ss_pred EECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEe-----eCccHHHHHhccCCCCCCCH
Confidence 999999999999999999999 99999999999975 67899999999984 566999993 2467
Q ss_pred HHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH--HHHHH-HHh-c
Q 024032 170 NRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK--SSPKY-VLR-R 221 (273)
Q Consensus 170 ~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~--~~l~~-l~~-~ 221 (273)
+++.++++.++ .+||||||||. |+ +++|+|||||||||+||+. ..+.+ +.+ .
T Consensus 1185 ~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~ 1264 (1321)
T 4f4c_A 1185 AQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR 1264 (1321)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc
Confidence 88888888776 57999999986 55 8999999999999999999 33333 322 1
Q ss_pred CCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 222 VDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 222 ~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
.|+|+|+| ..||+|+||++|+|++.|+|++|++++.
T Consensus 1265 ~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g 1307 (1321)
T 4f4c_A 1265 EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKG 1307 (1321)
T ss_dssp SSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC-
T ss_pred CCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCc
Confidence 28899998 4589999999999999999999997653
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=320.47 Aligned_cols=185 Identities=15% Similarity=0.211 Sum_probs=153.9
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----C
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----S 138 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~ 138 (273)
...++++|++++|..++..+ |+++||+|++||+++|+||||||||||+|+|+|+++++|+|.++|+++.. .
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~----L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~ 92 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAI----LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQW 92 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCS----EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHH
T ss_pred CCeEEEEEEEEEecCCCeEE----eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHH
Confidence 45799999999997555666 99999999999999999999999999999999998888999999999864 3
Q ss_pred CccEEEEeccchhhhccCCccccccccc----CCHHHHHHHHHHhc---------cc-----------CCHHHHHHH---
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRG----FNYNRVHEGLEELS---------SW-----------MSEGVHHNQ--- 191 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~----~~~~~~~~~l~~~~---------~~-----------LSgGqkq~~--- 191 (273)
++.+++++|++.+| .+||++|.. ...+++.++++.++ .+ ||||||||.
T Consensus 93 rr~ig~v~Q~~~lf-----~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalA 167 (390)
T 3gd7_A 93 RKAFGVIPQKVFIF-----SGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLA 167 (390)
T ss_dssp HHTEEEESCCCCCC-----SEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHH
T ss_pred hCCEEEEcCCcccC-----ccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHH
Confidence 47899999998753 459999853 34667778888776 34 999999987
Q ss_pred Hh-cCCCCEEEEcCcCCCCCHH--HHH-HHHHh-cCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 192 RC-LRSDDCALMKNDAEIDDLK--SSP-KYVLR-RVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 192 r~-l~~p~iLlLDEPts~LD~~--~~l-~~l~~-~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
|+ +.+|++|||||||++||+. ..+ ..+.+ ..+.|+|++ ..||||++|++|+|++.|++++++..|.
T Consensus 168 RAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~ 245 (390)
T 3gd7_A 168 RSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPA 245 (390)
T ss_dssp HHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCS
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 44 7999999999999999999 222 22222 127888888 4589999999999999999999987653
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-41 Score=303.09 Aligned_cols=183 Identities=16% Similarity=0.202 Sum_probs=146.0
Q ss_pred CCceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----
Q 024032 64 DGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---- 137 (273)
...++++|++++|..+ ++++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~v----l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~ 89 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQV----LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHH 89 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCC----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHH
T ss_pred CceEEEEEEEEEeCCCCCcee----eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHH
Confidence 3579999999999531 2456 999999999999999999999999999999999999 99999999998853
Q ss_pred -CCccEEEEeccchhhhccCCcccccccccC-----CH-HHH---------HHHHHHh--c---------ccCCHHHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRGF-----NY-NRV---------HEGLEEL--S---------SWMSEGVHHN 190 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~-~~~---------~~~l~~~--~---------~~LSgGqkq~ 190 (273)
.++.++|++|++.++ ..||+||..+ .. +.+ .+.++.+ + .+||||||||
T Consensus 90 ~~~~~i~~v~Q~~~l~-----~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QR 164 (271)
T 2ixe_A 90 YLHTQVAAVGQEPLLF-----GRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQA 164 (271)
T ss_dssp HHHHHEEEECSSCCCC-----SSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHH
T ss_pred HHhccEEEEecCCccc-----cccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHH
Confidence 345799999998642 3499998422 11 222 2334444 1 6799999998
Q ss_pred H---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 191 Q---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 191 ~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
. |+ +.+|++|||||||++||+. +.++++.++.|+|||++ ..||++++|++|++++.|++++++
T Consensus 165 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 244 (271)
T 2ixe_A 165 VALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLM 244 (271)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 7 34 8999999999999999999 22344433348899998 348999999999999999999987
Q ss_pred cC
Q 024032 254 SA 255 (273)
Q Consensus 254 ~~ 255 (273)
..
T Consensus 245 ~~ 246 (271)
T 2ixe_A 245 ER 246 (271)
T ss_dssp HH
T ss_pred hC
Confidence 54
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=336.07 Aligned_cols=217 Identities=15% Similarity=0.193 Sum_probs=174.3
Q ss_pred hhhhhhhhccchhhhhhhhHHHHHHHhchhhhc-------cCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcE
Q 024032 28 KFDECVKLKLDLPNVSTLTPRLRVLREMERLAL-------IAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVIT 100 (273)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-------~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~ 100 (273)
.+..+...-..++.+..+.+|+.++++.++... ....+.++++|++|+|+. ++++ |+|+||++++||+
T Consensus 309 ~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~-~~~~----l~~isl~i~~G~~ 383 (598)
T 3qf4_B 309 PLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDK-KKPV----LKDITFHIKPGQK 383 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSSCCCCCSCCCCEEEEEEECCSSS-SSCS----CCSEEEECCTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCeEEEEEEEEECCC-CCcc----ccceEEEEcCCCE
Confidence 344556666777889999999999988654311 112356999999999953 3456 9999999999999
Q ss_pred EEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc-----CCH
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-----FNY 169 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-----~~~ 169 (273)
+||+||||||||||+|+|+|+++ ++|+|.++|+++.+ +++++++++|++.+ +..||+||.. .+.
T Consensus 384 ~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~l-----f~~tv~eni~~~~~~~~~ 458 (598)
T 3qf4_B 384 VALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTIL-----FSTTVKENLKYGNPGATD 458 (598)
T ss_dssp EEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCC-----CSSBHHHHHHSSSTTCCT
T ss_pred EEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcc-----ccccHHHHHhcCCCCCCH
Confidence 99999999999999999999999 99999999999864 46789999999874 4569999842 334
Q ss_pred HHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHH
Q 024032 170 NRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVL 219 (273)
Q Consensus 170 ~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~ 219 (273)
+++.++++.++ .+||||||||. |+ +++|++|||||||++||+. +.++++.
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 538 (598)
T 3qf4_B 459 EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM 538 (598)
T ss_dssp THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc
Confidence 45555544332 47999999987 44 8999999999999999998 3345554
Q ss_pred hcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 220 RRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 220 ~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+ |+|+|+| ..||+|++|++|++++.|+++++++..
T Consensus 539 ~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 580 (598)
T 3qf4_B 539 E--GKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKR 580 (598)
T ss_dssp T--TSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTT
T ss_pred C--CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCC
Confidence 3 8999998 448999999999999999999998653
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-41 Score=298.70 Aligned_cols=187 Identities=16% Similarity=0.135 Sum_probs=155.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
+++++|++++ ++ |+++||+|++||+++|+||||||||||+|+|+|+++ + |+|.++|+++.. .+
T Consensus 4 ~l~~~~l~~~------~v----l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~ 72 (249)
T 2qi9_C 4 VMQLQDVAES------TR----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLA 72 (249)
T ss_dssp EEEEEEEEET------TT----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHH
T ss_pred EEEEEceEEE------EE----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHh
Confidence 5889999885 35 999999999999999999999999999999999999 9 999999998753 34
Q ss_pred ccEEEEeccchhhhccCCcccccccccC------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC--
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGF------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD-- 198 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~-- 198 (273)
+.++|++|++.+ ++.+||+||..+ ..+++.++++.++ .+||||||||. |+ +.+|+
T Consensus 73 ~~i~~v~q~~~~----~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~ 148 (249)
T 2qi9_C 73 LHRAYLSQQQTP----PFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQA 148 (249)
T ss_dssp HHEEEECSCCCC----CTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTT
T ss_pred ceEEEECCCCcc----CCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcC
Confidence 679999999875 445699998432 2566778888876 67999999987 33 78999
Q ss_pred -----EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc-Chhh
Q 024032 199 -----CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS-APGL 258 (273)
Q Consensus 199 -----iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~-~~~l 258 (273)
+|||||||+|||+. +.++++.++ |+|||++ .+||++++|++|++++.|+++++++ ...
T Consensus 149 ~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~- 226 (249)
T 2qi9_C 149 NPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNL- 226 (249)
T ss_dssp CTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSCHHHH-
T ss_pred CCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcChhH-
Confidence 99999999999999 345666655 8999999 4689999999999999999999986 344
Q ss_pred HHHhCCceEEE
Q 024032 259 RKCSKISFCIL 269 (273)
Q Consensus 259 ~~~~~~~~~~~ 269 (273)
.+.|+.+..+.
T Consensus 227 ~~~~~~~~~~~ 237 (249)
T 2qi9_C 227 AQAYGMNFRRL 237 (249)
T ss_dssp HHHHSSCEEEE
T ss_pred HHHhCCceeEe
Confidence 77788765543
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=352.74 Aligned_cols=216 Identities=13% Similarity=0.168 Sum_probs=180.3
Q ss_pred hhhhhhccchhhhhhhhHHHHHHHhchhhh---------ccCCCCceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCc
Q 024032 30 DECVKLKLDLPNVSTLTPRLRVLREMERLA---------LIAPDGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVI 99 (273)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~---------~~~~~~~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge 99 (273)
..+......++++.++.+|+.++++.++.. .....+.|+++||+|+|+.. +.++ |+|+||+|++|+
T Consensus 370 ~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~v----L~~isl~i~~G~ 445 (1321)
T 4f4c_A 370 GLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPI----LRGMNLRVNAGQ 445 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCS----EEEEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCce----eeceEEeecCCc
Confidence 344455566788999999999998765421 11123579999999999753 4566 999999999999
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFN 168 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~ 168 (273)
.+|||||||||||||+++|.|+++ ++|+|.++|.++++ +|+++++|+|++. +|+.||+||. ..+
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~-----Lf~~TI~eNI~~g~~~~~ 520 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPA-----LFNCTIEENISLGKEGIT 520 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC-----CCSEEHHHHHHTTCTTCC
T ss_pred EEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcce-----eeCCchhHHHhhhcccch
Confidence 999999999999999999999999 99999999999975 5678999999998 4566999993 346
Q ss_pred HHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHH
Q 024032 169 YNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYV 218 (273)
Q Consensus 169 ~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l 218 (273)
++++.++++.++ ..||||||||. |+ +++|+|||||||||+||+. +.+.++
T Consensus 521 ~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~ 600 (1321)
T 4f4c_A 521 REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKA 600 (1321)
T ss_dssp HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHH
Confidence 788888887764 57999999987 55 8999999999999999998 334555
Q ss_pred HhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 219 LRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 219 ~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
.+ |+|+|+| ..||+|+||++|+|++.|+|+|+++..
T Consensus 601 ~~--~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~ 643 (1321)
T 4f4c_A 601 AK--GRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQ 643 (1321)
T ss_dssp HT--TSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTT
T ss_pred hC--CCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhh
Confidence 54 8898888 568999999999999999999998654
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=296.79 Aligned_cols=180 Identities=17% Similarity=0.208 Sum_probs=146.4
Q ss_pred CceEEEEEEEEeecCC-eeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----C
Q 024032 65 GLNELRHKFLSYRSGD-FWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----S 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~-~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~ 138 (273)
..++++|++++|.... +++ |+++||+|++|++++|+||||||||||+|+|+|+++.+|+|.++|+++.. .
T Consensus 16 ~~l~i~~l~~~y~~~~~~~v----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~ 91 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRT----LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSI 91 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCS----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHH
T ss_pred CeEEEEEEEEEeCCCCcCce----eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHH
Confidence 4699999999995321 345 99999999999999999999999999999999998878999999998853 3
Q ss_pred CccEEEEeccchhhhccCCcccccccccC-----CHHHHHHHHHHhc--------------------ccCCHHHHHHH--
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGF-----NYNRVHEGLEELS--------------------SWMSEGVHHNQ-- 191 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~-----~~~~~~~~l~~~~--------------------~~LSgGqkq~~-- 191 (273)
++.++|++|++.+ +..||+||..+ ..+++.++++.++ .+||||||||.
T Consensus 92 ~~~i~~v~Q~~~l-----~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~l 166 (260)
T 2ghi_A 92 RSIIGIVPQDTIL-----FNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAI 166 (260)
T ss_dssp HTTEEEECSSCCC-----CSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHH
T ss_pred hccEEEEcCCCcc-----cccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHH
Confidence 5679999999874 34599998422 3445555554432 47999999987
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|+ +++|++|||||||++||+. +.++++. + ++|||++ ..||++++|++|++++.|++++++..
T Consensus 167 AraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 167 ARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp HHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 33 7899999999999999999 3345553 3 7899988 34899999999999999999998753
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=296.76 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=141.5
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC--cc-CccEEEECCeeCCCC--
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV--LS-RSGLVLFAQTSSGNS-- 138 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl--~~-~~G~I~i~g~~i~~~-- 138 (273)
..+++++|++++| +++++ |+++||+|++||+++|+||||||||||+|+|+|+ ++ ++|+|.++|+++...
T Consensus 18 ~~~l~~~~l~~~y--~~~~v----l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 18 SHMLSIKDLHVSV--EDKAI----LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91 (267)
T ss_dssp --CEEEEEEEEEE--TTEEE----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCH
T ss_pred CceEEEEeEEEEE--CCEEE----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCH
Confidence 3479999999999 45667 9999999999999999999999999999999999 45 899999999987532
Q ss_pred ----CccEEEEeccchhhhccCCccccccccc--------------CC----HHHHHHHHHHhc----------c-cCCH
Q 024032 139 ----SHTITMYMEEHNVMRSLQSGFCVYDSRG--------------FN----YNRVHEGLEELS----------S-WMSE 185 (273)
Q Consensus 139 ----~~~i~~v~q~~~~~~~~~~~~tv~en~~--------------~~----~~~~~~~l~~~~----------~-~LSg 185 (273)
++.+++++|++.++ ..+|+.+|.. .+ .+++.++++.++ . +|||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~----~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSg 167 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEI----PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG 167 (267)
T ss_dssp HHHHHHTEEEECSSCCCC----TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCH
T ss_pred HHHhhCCEEEEccCcccc----ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCH
Confidence 23489999998754 3346666521 11 124556666665 2 4999
Q ss_pred HHHHHH---Hh-cCCCCEEEEcCcCCCCCHHH------HHHHHHhcCCcEEEEc--------ee-CCEEEEEeCCeEeee
Q 024032 186 GVHHNQ---RC-LRSDDCALMKNDAEIDDLKS------SPKYVLRRVDFAMVVS--------NI-AEIYKALKAGDSKPL 246 (273)
Q Consensus 186 Gqkq~~---r~-l~~p~iLlLDEPts~LD~~~------~l~~l~~~~g~tiiiv--------~~-ad~i~vl~~G~i~~~ 246 (273)
|||||. |+ +.+|++|||||||+|||+.. .++++.++ |+|||++ .+ ||++++|++|++++.
T Consensus 168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG-KRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCS-SCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 999987 33 78999999999999999992 23334333 8999998 33 899999999999999
Q ss_pred cChhhhc
Q 024032 247 DATKRLF 253 (273)
Q Consensus 247 g~~~~l~ 253 (273)
|+++++.
T Consensus 247 g~~~~~~ 253 (267)
T 2zu0_C 247 GDFTLVK 253 (267)
T ss_dssp ECTTHHH
T ss_pred cCHHHHh
Confidence 9988764
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-40 Score=293.39 Aligned_cols=174 Identities=16% Similarity=0.199 Sum_probs=136.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC--cc-CccEEEECCeeCCCC----
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV--LS-RSGLVLFAQTSSGNS---- 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl--~~-~~G~I~i~g~~i~~~---- 138 (273)
+++++|++++| +++++ |+++||+|++||+++|+||||||||||+|+|+|+ ++ ++|+|.++|+++...
T Consensus 3 ~l~~~~l~~~y--~~~~v----l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~ 76 (250)
T 2d2e_A 3 QLEIRDLWASI--DGETI----LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE 76 (250)
T ss_dssp EEEEEEEEEEE--TTEEE----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHH
T ss_pred eEEEEeEEEEE--CCEEE----EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHH
Confidence 58999999999 45667 9999999999999999999999999999999998 67 999999999998642
Q ss_pred --CccEEEEeccchhhhccCCcccccccccC----------C----HHHHHHHHHHhc----------cc-CCHHHHHHH
Q 024032 139 --SHTITMYMEEHNVMRSLQSGFCVYDSRGF----------N----YNRVHEGLEELS----------SW-MSEGVHHNQ 191 (273)
Q Consensus 139 --~~~i~~v~q~~~~~~~~~~~~tv~en~~~----------~----~~~~~~~l~~~~----------~~-LSgGqkq~~ 191 (273)
+..+++++|++.++ ..+||++|..+ . .+++.++++.++ .+ ||||||||.
T Consensus 77 ~~~~~i~~v~q~~~~~----~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv 152 (250)
T 2d2e_A 77 RARKGLFLAFQYPVEV----PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRN 152 (250)
T ss_dssp HHHTTBCCCCCCCC-C----CSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHH
T ss_pred HHhCcEEEeccCCccc----cCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence 23478899988753 44588887321 1 234556666654 45 999999987
Q ss_pred ---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------ee-CCEEEEEeCCeEeeecChh
Q 024032 192 ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NI-AEIYKALKAGDSKPLDATK 250 (273)
Q Consensus 192 ---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~-ad~i~vl~~G~i~~~g~~~ 250 (273)
|+ +.+|++|||||||+|||+. +.++++.++ |+|||++ .+ ||++++|++|++++.|+++
T Consensus 153 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGP-NFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCST-TCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 33 7899999999999999999 334555443 8999998 34 5999999999999999987
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=284.81 Aligned_cols=175 Identities=14% Similarity=0.103 Sum_probs=139.8
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccE
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i 142 (273)
...++++|++++|..+++++ |+++||+|++|++++|+||||||||||+|+|+|+++ ++|+|.++| ++
T Consensus 4 ~~~l~~~~l~~~y~~~~~~i----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--------~i 71 (229)
T 2pze_A 4 TTEVVMENVTAFWEEGGTPV----LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------RI 71 (229)
T ss_dssp CEEEEEEEEEECSSTTSCCS----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--------CE
T ss_pred cceEEEEEEEEEeCCCCcee----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--------EE
Confidence 45799999999996545566 999999999999999999999999999999999999 999999998 48
Q ss_pred EEEeccchhhhccCCcccccccccC----CHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-c
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF----NYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-L 194 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~----~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l 194 (273)
+|++|++.+ +..||+||..+ ......+.++.++ .+||||||||. |+ +
T Consensus 72 ~~v~q~~~~-----~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~ 146 (229)
T 2pze_A 72 SFCSQFSWI-----MPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY 146 (229)
T ss_dssp EEECSSCCC-----CSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHH
T ss_pred EEEecCCcc-----cCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHh
Confidence 999999864 23499998432 2222222222211 48999999987 33 7
Q ss_pred CCCCEEEEcCcCCCCCHH--HHHHHH-Hh--cCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 195 RSDDCALMKNDAEIDDLK--SSPKYV-LR--RVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~--~~l~~l-~~--~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
++|++|||||||++||+. ..+.++ .+ ..|+|||++ ..||++++|++|++++.|++++++..
T Consensus 147 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 147 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp SCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999 334332 11 127899988 34899999999999999999998764
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=286.33 Aligned_cols=173 Identities=14% Similarity=0.178 Sum_probs=137.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
.++++|++++|..+++++ |+++||+|++|++++|+||||||||||+|+|+|+++ ++|+|.++| .++|
T Consensus 3 ~l~~~~l~~~y~~~~~~v----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--------~i~~ 70 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPT----LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--------SVAY 70 (237)
T ss_dssp CEEEEEEEEESCTTSCCS----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--------CEEE
T ss_pred eEEEEEEEEEeCCCCCce----eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--------EEEE
Confidence 589999999995434556 999999999999999999999999999999999999 999999998 3899
Q ss_pred EeccchhhhccCCcccccccccC----CHHHHHHHHH------Hh--------------cccCCHHHHHHH---Hh-cCC
Q 024032 145 YMEEHNVMRSLQSGFCVYDSRGF----NYNRVHEGLE------EL--------------SSWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~~~----~~~~~~~~l~------~~--------------~~~LSgGqkq~~---r~-l~~ 196 (273)
++|++. ++.+||+||..+ ..+...++++ .+ ..+||||||||. |+ +.+
T Consensus 71 v~Q~~~-----~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 145 (237)
T 2cbz_A 71 VPQQAW-----IQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN 145 (237)
T ss_dssp ECSSCC-----CCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EcCCCc-----CCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999875 346699998432 1122222222 11 157999999987 33 789
Q ss_pred CCEEEEcCcCCCCCHHH--HH-HHHH---h-cCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 197 DDCALMKNDAEIDDLKS--SP-KYVL---R-RVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 197 p~iLlLDEPts~LD~~~--~l-~~l~---~-~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|++|||||||++||+.. .+ ..+. + ..|+|||++ ..||++++|++|++++.|+++++++.
T Consensus 146 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 146 ADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR 218 (237)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc
Confidence 99999999999999982 23 3331 1 238899988 45899999999999999999998753
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=283.83 Aligned_cols=178 Identities=14% Similarity=0.137 Sum_probs=144.4
Q ss_pred ceEEEEEEEEeecC--CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC--CCcc
Q 024032 66 LNELRHKFLSYRSG--DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN--SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g--~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~--~~~~ 141 (273)
+++++|++++|..+ .+++ |+++||+|+ |++++|+||||||||||+|+|+|+++++|+|.++|+++.. .++.
T Consensus 1 ml~~~~l~~~y~~~~~~~~i----l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~ 75 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFS----LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIR 75 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEE----EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTT
T ss_pred CEEEEEEEEEeCCCCcccee----EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhh
Confidence 37899999999531 1556 999999999 9999999999999999999999988779999999988742 2567
Q ss_pred EE-EEeccchhhhccCCccccccccc-------CCHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCCE
Q 024032 142 IT-MYMEEHNVMRSLQSGFCVYDSRG-------FNYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDDC 199 (273)
Q Consensus 142 i~-~v~q~~~~~~~~~~~~tv~en~~-------~~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~i 199 (273)
++ |++|++.+ .+|++||.. ...+++.++++.++ .+||||||||. |+ +.+|++
T Consensus 76 i~~~v~Q~~~l------~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l 149 (263)
T 2pjz_A 76 YSTNLPEAYEI------GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEI 149 (263)
T ss_dssp EEECCGGGSCT------TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSE
T ss_pred eEEEeCCCCcc------CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 99 99998763 558998842 23556777777765 56999999987 33 799999
Q ss_pred EEEcCcCCCCCHH--HHH-HHHHhcCCcEEEEc--------eeCC-EEEEEeCCeEeeecChhhhccC
Q 024032 200 ALMKNDAEIDDLK--SSP-KYVLRRVDFAMVVS--------NIAE-IYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 200 LlLDEPts~LD~~--~~l-~~l~~~~g~tiiiv--------~~ad-~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|||||||++||+. ..+ +.+.+-.. |||++ .+|| ++++|++|++++.|+++++++.
T Consensus 150 llLDEPts~LD~~~~~~l~~~L~~~~~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 150 VGLDEPFENVDAARRHVISRYIKEYGK-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHSCS-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred EEEECCccccCHHHHHHHHHHHHHhcC-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 9999999999999 223 33333223 88888 5689 9999999999999999998754
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=276.34 Aligned_cols=167 Identities=18% Similarity=0.212 Sum_probs=134.1
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccE
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTI 142 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i 142 (273)
...++++|++++| ++ ++ |+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++...++.+
T Consensus 8 ~~~l~~~~ls~~y--~~-~i----l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i 80 (214)
T 1sgw_A 8 GSKLEIRDLSVGY--DK-PV----LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI 80 (214)
T ss_dssp -CEEEEEEEEEES--SS-EE----EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGE
T ss_pred CceEEEEEEEEEe--CC-eE----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcE
Confidence 3579999999998 44 67 999999999999999999999999999999999999 9999999999875456779
Q ss_pred EEEeccchhhhccCCccccccccc---------CCHHHHHHHHHHhc--------ccCCHHHHHHH---Hh-cCCCCEEE
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRG---------FNYNRVHEGLEELS--------SWMSEGVHHNQ---RC-LRSDDCAL 201 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~---------~~~~~~~~~l~~~~--------~~LSgGqkq~~---r~-l~~p~iLl 201 (273)
+|++|++.+ +..+||+||.. ...+++.++++.++ .+||||||||. |+ +.+|++||
T Consensus 81 ~~v~q~~~~----~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lll 156 (214)
T 1sgw_A 81 FFLPEEIIV----PRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYV 156 (214)
T ss_dssp EEECSSCCC----CTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred EEEeCCCcC----CCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 999999875 34458988832 12456777888775 47999999987 33 78999999
Q ss_pred EcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 202 MKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 202 LDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
|||||++||+. +.++++.++ |.|||++ .+||+++++ .|+|
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 157 LDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 99999999999 345566555 8899998 345665543 4444
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=334.44 Aligned_cols=215 Identities=15% Similarity=0.174 Sum_probs=171.8
Q ss_pred hhhhhccchhhhhhhhHHHHHHHhchhhh---------ccCCCCceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcE
Q 024032 31 ECVKLKLDLPNVSTLTPRLRVLREMERLA---------LIAPDGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVIT 100 (273)
Q Consensus 31 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~---------~~~~~~~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~ 100 (273)
.+...-..++.+..+..|+.++++.++.. .....+.++++|++|+|+.+ +.++ |+|+||+|++||+
T Consensus 343 ~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~v----L~~isl~i~~G~~ 418 (1284)
T 3g5u_A 343 QASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI----LKGLNLKVKSGQT 418 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCS----EEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcc----eecceEEEcCCCE
Confidence 33344456678888999999988754321 11123579999999999753 3456 9999999999999
Q ss_pred EEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCcccccccc-----cCCH
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSR-----GFNY 169 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~-----~~~~ 169 (273)
+||+||||||||||+++|+|+++ ++|+|.++|.++.. +++++++++|++.+ +..||+||. ..+.
T Consensus 419 ~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-----~~~ti~eNi~~g~~~~~~ 493 (1284)
T 3g5u_A 419 VALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVL-----FATTIAENIRYGREDVTM 493 (1284)
T ss_dssp EEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCC-----CSSCHHHHHHHHCSSCCH
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCcc-----CCccHHHHHhcCCCCCCH
Confidence 99999999999999999999999 99999999999864 46789999999974 445999993 2456
Q ss_pred HHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHH
Q 024032 170 NRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVL 219 (273)
Q Consensus 170 ~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~ 219 (273)
+++.++++.++ .+||||||||. |+ +++|+|||||||||+||+. +.++.+.
T Consensus 494 ~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~ 573 (1284)
T 3g5u_A 494 DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR 573 (1284)
T ss_dssp HHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc
Confidence 66666665543 47999999987 44 7899999999999999999 2233333
Q ss_pred hcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 220 RRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 220 ~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+ |+|+|+| ..||+|++|++|+|++.|+++++++..
T Consensus 574 -~-~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~ 615 (1284)
T 3g5u_A 574 -E-GRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREK 615 (1284)
T ss_dssp -T-TSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTT
T ss_pred -C-CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCC
Confidence 3 8999998 448999999999999999999998654
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=330.73 Aligned_cols=215 Identities=15% Similarity=0.204 Sum_probs=172.5
Q ss_pred hhhhccchhhhhhhhHHHHHHHhchhhhc---------cCCCCceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcEE
Q 024032 32 CVKLKLDLPNVSTLTPRLRVLREMERLAL---------IAPDGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITI 101 (273)
Q Consensus 32 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---------~~~~~~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~~ 101 (273)
+......++.+..+..|+.++++.++... ....+.++++|++|+|+.+ +.++ |+|+||+|++||++
T Consensus 987 ~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~----l~~vsl~i~~Ge~v 1062 (1284)
T 3g5u_A 987 VSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPV----LQGLSLEVKKGQTL 1062 (1284)
T ss_dssp HTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCS----BSSCCEEECSSSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCee----ecceeEEEcCCCEE
Confidence 33344566788889999999987653211 1123579999999999643 2345 99999999999999
Q ss_pred EEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccccc-------CC
Q 024032 102 LLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDSRG-------FN 168 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en~~-------~~ 168 (273)
||+||||||||||+++|+|+++ ++|+|.++|+++.. +|+++++++|++. ++..||+||.. .+
T Consensus 1063 ~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-----l~~~ti~eNi~~~~~~~~~~ 1137 (1284)
T 3g5u_A 1063 ALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPI-----LFDCSIAENIAYGDNSRVVS 1137 (1284)
T ss_dssp EEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCC-----CCSSBHHHHHTCCCSSCCCC
T ss_pred EEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCc-----cccccHHHHHhccCCCCCCC
Confidence 9999999999999999999999 99999999999874 5678999999986 44569999842 34
Q ss_pred HHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHH
Q 024032 169 YNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYV 218 (273)
Q Consensus 169 ~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l 218 (273)
.+++.++++.++ .+||||||||. |+ +++|++|||||||++||+. +.++++
T Consensus 1138 ~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~ 1217 (1284)
T 3g5u_A 1138 YEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA 1217 (1284)
T ss_dssp HHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 566777766654 47999999987 44 7899999999999999999 223333
Q ss_pred HhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 219 LRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 219 ~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
. + |+|+|+| ..||||++|++|+|++.|++++++++..
T Consensus 1218 ~-~-~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g 1261 (1284)
T 3g5u_A 1218 R-E-GRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKG 1261 (1284)
T ss_dssp S-S-SSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSCS
T ss_pred C-C-CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 2 3 8899888 4589999999999999999999986543
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=280.28 Aligned_cols=197 Identities=14% Similarity=0.101 Sum_probs=136.2
Q ss_pred cchhhhhhhhH-HHHHHHhchhhh-----ccCCCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCCh
Q 024032 37 LDLPNVSTLTP-RLRVLREMERLA-----LIAPDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSG 110 (273)
Q Consensus 37 ~~~~~~~~~~~-r~~~~~~~~~~~-----~~~~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsG 110 (273)
..++.+..+.. ++.++++.+... .......++++|+++.+ +++ |+++||+|++|++++|+||||||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----~~v----l~~isl~i~~Ge~~~i~G~NGsG 76 (290)
T 2bbs_A 5 VVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLG----TPV----LKDINFKIERGQLLAVAGSTGAG 76 (290)
T ss_dssp EEEEEEEECSSHHHHHHHHHCC-----------------------C----CCS----EEEEEEEECTTCEEEEEESTTSS
T ss_pred EeHHhhHHHHHHHHHHHhcccccccccccccCCCceEEEEEEEEcC----ceE----EEeeEEEEcCCCEEEEECCCCCc
Confidence 34444555555 777776644321 11123468999999853 345 99999999999999999999999
Q ss_pred HHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc---CCHHHHHHHHHHhc------
Q 024032 111 KSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG---FNYNRVHEGLEELS------ 180 (273)
Q Consensus 111 KSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~---~~~~~~~~~l~~~~------ 180 (273)
||||+|+|+|+++ ++|+|.++| +++|++|++.+ +..||+||.. .....+.+.++.++
T Consensus 77 KSTLlk~l~Gl~~p~~G~I~~~g--------~i~~v~Q~~~l-----~~~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~ 143 (290)
T 2bbs_A 77 KTSLLMMIMGELEPSEGKIKHSG--------RISFCSQNSWI-----MPGTIKENIIGVSYDEYRYRSVIKACQLEEDIS 143 (290)
T ss_dssp HHHHHHHHTTSSCEEEEEEECCS--------CEEEECSSCCC-----CSSBHHHHHHTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcCCCCCCcEEEECC--------EEEEEeCCCcc-----CcccHHHHhhCcccchHHHHHHHHHhChHHHHH
Confidence 9999999999999 999999988 48999998764 2348998852 12222222222211
Q ss_pred --------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHHH--HHHHH-Hh--cCCcEEEEc-------e
Q 024032 181 --------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLKS--SPKYV-LR--RVDFAMVVS-------N 230 (273)
Q Consensus 181 --------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~~--~l~~l-~~--~~g~tiiiv-------~ 230 (273)
.+||||||||. |+ +.+|++|||||||+|||+.. .+.++ .+ ..|+|||++ .
T Consensus 144 ~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~ 223 (290)
T 2bbs_A 144 KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 223 (290)
T ss_dssp TSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH
T ss_pred hccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH
Confidence 48999999987 33 79999999999999999993 33332 11 127899998 3
Q ss_pred eCCEEEEEeCCeEeeecChhhhcc
Q 024032 231 IAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 231 ~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
.||++++|++|+++..|++++++.
T Consensus 224 ~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 224 KADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HSSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCEEEEEECCeEEEeCCHHHHhh
Confidence 489999999999999999999864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=275.64 Aligned_cols=172 Identities=16% Similarity=0.160 Sum_probs=140.0
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
..+++++++++|. + .. |+.+||+|++||++||+||||||||||+|+|+|+++ ++|+|.+ ...++
T Consensus 356 ~~l~~~~l~~~~~--~-~~----l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--------~~~i~ 420 (607)
T 3bk7_A 356 TLVEYPRLVKDYG--S-FK----LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--------DLTVA 420 (607)
T ss_dssp EEEEECCEEEECS--S-CE----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC--------CCCEE
T ss_pred eEEEEeceEEEec--c-eE----EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE--------eeEEE
Confidence 3688999999883 3 24 999999999999999999999999999999999999 9999986 24689
Q ss_pred EEeccchhhhccCCcccccccccC-------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEc
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRGF-------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMK 203 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~~-------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLD 203 (273)
|++|++.. .+.+||.++... ..+.+.++++.++ .+||||||||+ |+ +.+|++||||
T Consensus 421 ~v~Q~~~~----~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLD 496 (607)
T 3bk7_A 421 YKPQYIKA----EYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 496 (607)
T ss_dssp EECSSCCC----CCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred EEecCccC----CCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 99998764 355688776321 2334566777776 68999999987 33 7899999999
Q ss_pred CcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC--CeEeeecChhhhccC
Q 024032 204 NDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKA--GDSKPLDATKRLFSA 255 (273)
Q Consensus 204 EPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~--G~i~~~g~~~~l~~~ 255 (273)
|||++||+. +.++++.++.|.|||+| .+|||+++|++ |++...|+++++++.
T Consensus 497 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 497 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 999999999 34556654458999998 56899999986 888889999998753
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.9e-33 Score=271.71 Aligned_cols=172 Identities=15% Similarity=0.153 Sum_probs=137.6
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
..++++++++.|. + .. |+.+||+|++||++||+||||||||||+|+|+|+++ ++|+|.+ ...++
T Consensus 286 ~~l~~~~l~~~~~--~-~~----l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~--------~~~i~ 350 (538)
T 1yqt_A 286 TLVTYPRLVKDYG--S-FR----LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--------DLTVA 350 (538)
T ss_dssp EEEEECCEEEEET--T-EE----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC--------CCCEE
T ss_pred eEEEEeeEEEEEC--C-EE----EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE--------CceEE
Confidence 3689999998883 3 24 999999999999999999999999999999999999 9999986 24689
Q ss_pred EEeccchhhhccCCcccccccccC-------CHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEc
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRGF-------NYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMK 203 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~~-------~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLD 203 (273)
|++|++.. .+.+||.++... ..+.+.++++.++ .+||||||||. |+ +.+|++||||
T Consensus 351 ~v~Q~~~~----~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLD 426 (538)
T 1yqt_A 351 YKPQYIKA----DYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD 426 (538)
T ss_dssp EECSSCCC----CCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred EEecCCcC----CCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 99998764 355688776321 1233455555554 68999999987 33 7899999999
Q ss_pred CcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC--CeEeeecChhhhccC
Q 024032 204 NDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKA--GDSKPLDATKRLFSA 255 (273)
Q Consensus 204 EPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~--G~i~~~g~~~~l~~~ 255 (273)
|||+|||+. +.++++.++.|.|||+| .+||||++|++ |+++..|+++++++.
T Consensus 427 EPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 427 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 999999999 34555554348999998 56899999986 788889999988753
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-31 Score=262.89 Aligned_cols=171 Identities=13% Similarity=0.066 Sum_probs=133.2
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
..++++++++.|. + .. |..+||+|++||++||+||||||||||+|+|+|+++ ++|+|.+++. .++
T Consensus 268 ~~l~~~~l~~~~~--~-~~----l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------~i~ 333 (538)
T 3ozx_A 268 TKMKWTKIIKKLG--D-FQ----LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ-------ILS 333 (538)
T ss_dssp EEEEECCEEEEET--T-EE----EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC-------CEE
T ss_pred ceEEEcceEEEEC--C-EE----EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe-------eeE
Confidence 3688999999884 3 33 888899999999999999999999999999999999 9999997653 478
Q ss_pred EEeccchhhhccCCccccccccc--------CCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEE
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSRG--------FNYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALM 202 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~~--------~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlL 202 (273)
+++|+... .+..||.+|.. .....+.++++.++ .+||||||||+ |+ +.+|++|||
T Consensus 334 ~~~q~~~~----~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlL 409 (538)
T 3ozx_A 334 YKPQRIFP----NYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVL 409 (538)
T ss_dssp EECSSCCC----CCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred eechhccc----ccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 88887553 34567877621 11233455555554 78999999987 33 799999999
Q ss_pred cCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC--CeEeeecChhhhc
Q 024032 203 KNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKA--GDSKPLDATKRLF 253 (273)
Q Consensus 203 DEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~--G~i~~~g~~~~l~ 253 (273)
||||+|||+. +.++++.++.|.|||+| .+||||++|++ |.+...+++.++.
T Consensus 410 DEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 410 DQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999 34566765558999888 56899999986 5555666665543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-31 Score=272.98 Aligned_cols=174 Identities=17% Similarity=0.160 Sum_probs=126.0
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
.+++++|++++|+.+++++ |+++||+|++|+++||+||||||||||+|+|+|+++ ++|+|+++|. .+++
T Consensus 670 ~mL~v~nLs~~Y~g~~~~i----L~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~------~~I~ 739 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTSKPQ----ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN------CRIA 739 (986)
T ss_dssp EEEEEEEEEECCTTCSSCS----EEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT------CCEE
T ss_pred ceEEEEeeEEEeCCCCcee----eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc------cceE
Confidence 3699999999985333556 999999999999999999999999999999999999 9999999863 1356
Q ss_pred EEeccchhh-h-c-------------------------------------------------------------------
Q 024032 144 MYMEEHNVM-R-S------------------------------------------------------------------- 154 (273)
Q Consensus 144 ~v~q~~~~~-~-~------------------------------------------------------------------- 154 (273)
|++|++... . .
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 666543210 0 0
Q ss_pred -------------cCCccccccccc------------------------------CCHHHHHHHHHHhc-----------
Q 024032 155 -------------LQSGFCVYDSRG------------------------------FNYNRVHEGLEELS----------- 180 (273)
Q Consensus 155 -------------~~~~~tv~en~~------------------------------~~~~~~~~~l~~~~----------- 180 (273)
.+..+|+.+|.. ...+++.+.++.++
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~ 899 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI 899 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCc
Confidence 000112222210 11334555665544
Q ss_pred ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHHH--HHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 181 SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLKS--SPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 181 ~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~~--~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
.+||||||||. |+ +.+|++|||||||+|||+.. .+.++.++.+.|||+| .+||++++|++|+++..
T Consensus 900 ~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~ 979 (986)
T 2iw3_A 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPS 979 (986)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC-
T ss_pred cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 57999999987 33 78999999999999999993 3333334457899888 56899999999999877
Q ss_pred cC
Q 024032 247 DA 248 (273)
Q Consensus 247 g~ 248 (273)
|+
T Consensus 980 G~ 981 (986)
T 2iw3_A 980 GH 981 (986)
T ss_dssp --
T ss_pred CC
Confidence 64
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-31 Score=259.49 Aligned_cols=169 Identities=14% Similarity=0.105 Sum_probs=132.7
Q ss_pred EEEEEEeecCCeeeeccceeeeeeEEcCC-----cEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEE
Q 024032 70 RHKFLSYRSGDFWIPIGGIQKGGMDIPPV-----ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTIT 143 (273)
Q Consensus 70 ~~v~~~y~~g~~~v~~~~L~~is~~i~~G-----e~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~ 143 (273)
++++++|+. ...+ ++++||++.+| |++||+||||||||||+++|+|+++ ++|+. + .+..++
T Consensus 350 ~~~~~~y~~-~~~~----l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~--~~~~i~ 416 (608)
T 3j16_B 350 ASRAFSYPS-LKKT----QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------I--PKLNVS 416 (608)
T ss_dssp SSSCCEECC-EEEE----CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------C--CSCCEE
T ss_pred cceeEEecC-cccc----cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------c--cCCcEE
Confidence 456677742 2334 99999999999 7899999999999999999999999 99963 1 134689
Q ss_pred EEeccchhhhccCCcccccccc-------cCCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEc
Q 024032 144 MYMEEHNVMRSLQSGFCVYDSR-------GFNYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMK 203 (273)
Q Consensus 144 ~v~q~~~~~~~~~~~~tv~en~-------~~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLD 203 (273)
+++|+... .+..||.++. ......+.++++.++ .+||||||||+ |+ +.+|++||||
T Consensus 417 ~~~q~~~~----~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD 492 (608)
T 3j16_B 417 MKPQKIAP----KFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID 492 (608)
T ss_dssp EECSSCCC----CCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred Eecccccc----cCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99997653 3445777652 123445666777776 68999999987 33 7899999999
Q ss_pred CcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeC--CeEeeecChhhhccC
Q 024032 204 NDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKA--GDSKPLDATKRLFSA 255 (273)
Q Consensus 204 EPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~--G~i~~~g~~~~l~~~ 255 (273)
|||+|||+. +.++++.++.|.|||+| .+||||++|++ |+++..|+|+++++.
T Consensus 493 EPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 493 EPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 999999998 34566654448999999 56899999986 999999999999875
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-31 Score=260.35 Aligned_cols=167 Identities=12% Similarity=0.110 Sum_probs=128.1
Q ss_pred ceEE--------EEEEEEeecCCe-eeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEE-------
Q 024032 66 LNEL--------RHKFLSYRSGDF-WIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV------- 128 (273)
Q Consensus 66 ~i~~--------~~v~~~y~~g~~-~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I------- 128 (273)
.|++ +|++++|. +. .+ |+++| +|++||++||+||||||||||+|+|+|+++ ++|++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg--~~~~~----l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~ 155 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYG--VNAFV----LYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNV 155 (607)
T ss_dssp CCEEEEECTTGGGSEEEECS--TTCCE----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHH
T ss_pred eEEEecCCccccCCeEEEEC--CCCee----eCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchh
Confidence 5777 78888884 33 35 99999 999999999999999999999999999998 99996
Q ss_pred --EECCeeCCC-------CCccEEEEeccchhhhccCCccccccccc--CCHHHHHHHHHHhc---------ccCCHHHH
Q 024032 129 --LFAQTSSGN-------SSHTITMYMEEHNVMRSLQSGFCVYDSRG--FNYNRVHEGLEELS---------SWMSEGVH 188 (273)
Q Consensus 129 --~i~g~~i~~-------~~~~i~~v~q~~~~~~~~~~~~tv~en~~--~~~~~~~~~l~~~~---------~~LSgGqk 188 (273)
.++|.++.. .+..+++++|....++.. +..|+.+|.. ...+++.++++.++ .+||||||
T Consensus 156 ~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGek 234 (607)
T 3bk7_A 156 IRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKA-VKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGEL 234 (607)
T ss_dssp HHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGT-CCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHH
T ss_pred hheeCCEehhhhhhhhhhhhcceEEeechhhhchhh-ccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHH
Confidence 456655421 124577888876554432 2237777632 12235667777776 68999999
Q ss_pred HHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCC
Q 024032 189 HNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAG 241 (273)
Q Consensus 189 q~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G 241 (273)
||. |+ +.+|++|||||||++||+. +.++++.++ |.|||+| .+||+|++|+++
T Consensus 235 QRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 235 QRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEecChHHHHhhCCEEEEECCC
Confidence 987 33 7999999999999999999 346666655 8999999 458999999865
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-31 Score=257.98 Aligned_cols=163 Identities=12% Similarity=0.118 Sum_probs=124.1
Q ss_pred EEEEEEeecCCe-eeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEE---------EECCeeCCC-
Q 024032 70 RHKFLSYRSGDF-WIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV---------LFAQTSSGN- 137 (273)
Q Consensus 70 ~~v~~~y~~g~~-~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I---------~i~g~~i~~- 137 (273)
+|++++|. +. .+ |+++| +|++||++||+||||||||||+|+|+|+++ ++|++ .++|.++..
T Consensus 25 ~~ls~~yg--~~~~~----l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 25 EDCVHRYG--VNAFV----LYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp CCEEEECS--TTCCE----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred cCcEEEEC--Ccccc----ccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 58889884 33 35 99999 999999999999999999999999999998 99995 356654421
Q ss_pred ------CCccEEEEeccchhhhccCCccccccccc--CCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCC
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRG--FNYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~--~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~ 196 (273)
.+..+++++|....++... ..++.++.. ...+++.++++.++ .+||||||||+ ++ +.+
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~-~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~ 176 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAV-KGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRN 176 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGC-CSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhh-hccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 2245778888765544322 236666531 11234667788776 68999999987 33 799
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCC
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAG 241 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G 241 (273)
|++|||||||++||+. +.++++.++ |.|||+| .+||+|++|++|
T Consensus 177 P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 177 ATFYFFDEPSSYLDIRQRLNAARAIRRLSEE-GKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999 345666654 8999999 468999999864
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-30 Score=259.08 Aligned_cols=169 Identities=16% Similarity=0.182 Sum_probs=107.7
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHH---------------------HHHhhCcc-C-------ccEEEECCeeCCC
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLV---------------------NLMYSVLS-R-------SGLVLFAQTSSGN 137 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl---------------------~ll~gl~~-~-------~G~I~i~g~~i~~ 137 (273)
+|++|||+|++||++||+||||||||||+ +++.|+.. + .|.|.++|.+...
T Consensus 33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~ 112 (670)
T 3ux8_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSR 112 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC---
T ss_pred ceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhc
Confidence 49999999999999999999999999998 88888876 6 4556666655432
Q ss_pred -CCccEEEEeccchhhhc---------------cCCcccccccccCC------H--HH-----H------HHHHHHhc--
Q 024032 138 -SSHTITMYMEEHNVMRS---------------LQSGFCVYDSRGFN------Y--NR-----V------HEGLEELS-- 180 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~---------------~~~~~tv~en~~~~------~--~~-----~------~~~l~~~~-- 180 (273)
.++.+++++|....+.. .+..+||+||..+. . .. + .+.++.++
T Consensus 113 ~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 192 (670)
T 3ux8_A 113 NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLD 192 (670)
T ss_dssp --CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTCT
T ss_pred cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCc
Confidence 23344444443332110 12345788874321 0 00 0 11244432
Q ss_pred --------ccCCHHHHHHH---Hh-cCCCC--EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCC
Q 024032 181 --------SWMSEGVHHNQ---RC-LRSDD--CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAE 233 (273)
Q Consensus 181 --------~~LSgGqkq~~---r~-l~~p~--iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad 233 (273)
.+||||||||. |+ +.+|+ +|||||||+|||+. +.++++.++ |.|||+| ..||
T Consensus 193 ~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~d 271 (670)
T 3ux8_A 193 YLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL-GNTLIVVEHDEDTMLAAD 271 (670)
T ss_dssp TCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT-TCEEEEECCCHHHHHHCS
T ss_pred hhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHhhCC
Confidence 67999999987 44 67887 99999999999999 445667655 9999999 4489
Q ss_pred EEEEE------eCCeEeeecChhhhccCh
Q 024032 234 IYKAL------KAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 234 ~i~vl------~~G~i~~~g~~~~l~~~~ 256 (273)
++++| ++|++++.|+++++.+++
T Consensus 272 ~ii~l~~g~~~~~G~i~~~g~~~~~~~~~ 300 (670)
T 3ux8_A 272 YLIDIGPGAGIHGGEVVAAGTPEEVMNDP 300 (670)
T ss_dssp EEEEECSSSGGGCCSEEEEECHHHHHTCT
T ss_pred EEEEecccccccCCEEEEecCHHHHhcCc
Confidence 99999 899999999999998754
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=259.95 Aligned_cols=171 Identities=17% Similarity=0.133 Sum_probs=128.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMY 145 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v 145 (273)
.+...|++++| +++.+ |+++||+|++|++++|+||||||||||+|+|+| |+| +|.+.... .+++++
T Consensus 435 ~L~~~~ls~~y--g~~~i----L~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----G~i--~g~~~~~~-~~~~~v 500 (986)
T 2iw3_A 435 DLCNCEFSLAY--GAKIL----LNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----GQV--DGFPTQEE-CRTVYV 500 (986)
T ss_dssp EEEEEEEEEEE--TTEEE----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----TCS--TTCCCTTT-SCEEET
T ss_pred eeEEeeEEEEE--CCEEe----EecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----CCc--CCCccccc-eeEEEE
Confidence 34455666665 66777 999999999999999999999999999999996 444 44443221 235676
Q ss_pred eccchhhhccCCcccccccccC----CHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCC
Q 024032 146 MEEHNVMRSLQSGFCVYDSRGF----NYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRSDDCALMKNDAE 207 (273)
Q Consensus 146 ~q~~~~~~~~~~~~tv~en~~~----~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~p~iLlLDEPts 207 (273)
+|+... ++..+|+.+|... ..+++.+.++.++ .+||||||||. |+ +.+|++|||||||+
T Consensus 501 ~q~~~~---~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs 577 (986)
T 2iw3_A 501 EHDIDG---THSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTN 577 (986)
T ss_dssp TCCCCC---CCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTT
T ss_pred cccccc---cccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 665421 1345588776421 1566777777766 58999999987 33 79999999999999
Q ss_pred CCCHHH--H-HHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEe-eecChhhhcc
Q 024032 208 IDDLKS--S-PKYVLRRVDFAMVVS--------NIAEIYKALKAGDSK-PLDATKRLFS 254 (273)
Q Consensus 208 ~LD~~~--~-l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~-~~g~~~~l~~ 254 (273)
+||+.. . ...+.+ .|.|||++ .+||++++|++|+++ ..|++++++.
T Consensus 578 ~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 578 HLDTVNVAWLVNYLNT-CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999992 2 333444 48999999 568999999999997 5899988763
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.1e-29 Score=248.25 Aligned_cols=168 Identities=17% Similarity=0.203 Sum_probs=114.6
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHh----------------------hCccCccEEEECCeeCCCCCc----
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMY----------------------SVLSRSGLVLFAQTSSGNSSH---- 140 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~----------------------gl~~~~G~I~i~g~~i~~~~~---- 140 (273)
+|++|||+|++||++||+||||||||||+++|. |+....|.|.+++.++.....
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~~~ 416 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 416 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCCHH
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcchh
Confidence 499999999999999999999999999998764 333345678888877642110
Q ss_pred ------------------------------------------cEEEEeccchhhhcc-----------------------
Q 024032 141 ------------------------------------------TITMYMEEHNVMRSL----------------------- 155 (273)
Q Consensus 141 ------------------------------------------~i~~v~q~~~~~~~~----------------------- 155 (273)
..++++++..+++..
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (670)
T 3ux8_A 417 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 496 (670)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTT
T ss_pred hhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheeecC
Confidence 012222222211110
Q ss_pred -----CCcccccccccC-----CHHHHHHHHHHhc----------ccCCHHHHHHH---Hh-cCC---CCEEEEcCcCCC
Q 024032 156 -----QSGFCVYDSRGF-----NYNRVHEGLEELS----------SWMSEGVHHNQ---RC-LRS---DDCALMKNDAEI 208 (273)
Q Consensus 156 -----~~~~tv~en~~~-----~~~~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~---p~iLlLDEPts~ 208 (273)
...+||.+|..+ ..++..+.++.++ .+||||||||+ |+ +.+ |++|||||||+|
T Consensus 497 ~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~ 576 (670)
T 3ux8_A 497 KNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTG 576 (670)
T ss_dssp BCHHHHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTT
T ss_pred CCHHHHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCC
Confidence 012355555221 1123444555543 68999999987 44 455 469999999999
Q ss_pred CCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE------eCCeEeeecChhhhccC
Q 024032 209 DDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL------KAGDSKPLDATKRLFSA 255 (273)
Q Consensus 209 LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl------~~G~i~~~g~~~~l~~~ 255 (273)
||+. +.++++.++ |.|||+| ..||+|++| ++|+|++.|+++++.+.
T Consensus 577 LD~~~~~~i~~~l~~l~~~-g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~ 641 (670)
T 3ux8_A 577 LHVDDIARLLDVLHRLVDN-GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 641 (670)
T ss_dssp CCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence 9999 346667655 9999999 458999999 89999999999999754
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-27 Score=234.22 Aligned_cols=162 Identities=14% Similarity=0.142 Sum_probs=113.2
Q ss_pred EEEEEeecCCeeeeccceeeeeeE-EcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEE-----------EECCeeCCC
Q 024032 71 HKFLSYRSGDFWIPIGGIQKGGMD-IPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV-----------LFAQTSSGN 137 (273)
Q Consensus 71 ~v~~~y~~g~~~v~~~~L~~is~~-i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I-----------~i~g~~i~~ 137 (273)
+...+|..++ ++-..+. +++||++||+||||||||||+|+|+|+++ ++|+| .+.|.++..
T Consensus 4 ~~~~~~~~~~-------f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~ 76 (538)
T 3ozx_A 4 EVIHRYKVNG-------FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYN 76 (538)
T ss_dssp CEEEESSTTS-------CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHH
T ss_pred CCceecCCCc-------eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHH
Confidence 3456665444 4444454 45999999999999999999999999998 99998 567766531
Q ss_pred -------CCccEEEEeccchhhhccCCccccccccc--CCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC
Q 024032 138 -------SSHTITMYMEEHNVMRSLQSGFCVYDSRG--FNYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LR 195 (273)
Q Consensus 138 -------~~~~i~~v~q~~~~~~~~~~~~tv~en~~--~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~ 195 (273)
....+...+|.....+. .+..++.++.. ...+.+.++++.++ .+||||||||+ ++ +.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~ 155 (538)
T 3ozx_A 77 YFKELYSNELKIVHKIQYVEYASK-FLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLR 155 (538)
T ss_dssp HHHHHHTTCCCEEEECSCTTGGGT-TCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhhcccchhhccchhhhhhh-hccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 11234445554433322 22335554321 11234556677666 78999999987 33 78
Q ss_pred CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCe
Q 024032 196 SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGD 242 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~ 242 (273)
+|++|||||||++||+. +.++++. + |+|||+| .+||+|++|++|.
T Consensus 156 ~p~illlDEPts~LD~~~~~~l~~~l~~l~-~-g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 156 EADVYIFDQPSSYLDVRERMNMAKAIRELL-K-NKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHC-T-TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 99999999999999998 3345554 3 8999999 5689999998754
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-27 Score=233.60 Aligned_cols=166 Identities=14% Similarity=0.095 Sum_probs=111.2
Q ss_pred EEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEE-----------ECCeeCCC-
Q 024032 71 HKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL-----------FAQTSSGN- 137 (273)
Q Consensus 71 ~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~-----------i~g~~i~~- 137 (273)
+++++|..+ ... |++++ .+++||++||+||||||||||+|+|+|+++ ++|+|. +.|..+..
T Consensus 82 ~~~~~Y~~~-~~~----l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~ 155 (608)
T 3j16_B 82 HVTHRYSAN-SFK----LHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNY 155 (608)
T ss_dssp TEEEECSTT-SCE----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHH
T ss_pred CeEEEECCC-cee----ecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhh
Confidence 456666432 223 67766 689999999999999999999999999999 999982 33332211
Q ss_pred ----CCccE--EEEeccchhhhccCC--cccccccc----cCCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 138 ----SSHTI--TMYMEEHNVMRSLQS--GFCVYDSR----GFNYNRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 138 ----~~~~i--~~v~q~~~~~~~~~~--~~tv~en~----~~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
....+ .+.+|....++.... ..++.++. ....+.+.++++.++ .+||||||||. ++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAra 235 (608)
T 3j16_B 156 FTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMS 235 (608)
T ss_dssp HHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHH
T ss_pred hhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHH
Confidence 00111 122222111111000 01222221 123467788888887 78999999987 33
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeE
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDS 243 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i 243 (273)
+.+|++|||||||++||+. +.++++.++ |.|||+| .+||+|++|++|..
T Consensus 236 L~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 236 CVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP-TKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTT-TCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 7899999999999999998 334555554 8999999 46899999988654
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-26 Score=232.45 Aligned_cols=181 Identities=18% Similarity=0.164 Sum_probs=123.7
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHH-HhhCcc-------------------
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNL-MYSVLS------------------- 123 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~l-l~gl~~------------------- 123 (273)
...++++++++. . |++|||+|++|+++||+|+||||||||+++ |+|++.
T Consensus 500 ~~~L~v~~l~~~-------~----L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~ 568 (842)
T 2vf7_A 500 AGWLELNGVTRN-------N----LDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPAD 568 (842)
T ss_dssp SCEEEEEEEEET-------T----EEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC--------------
T ss_pred CceEEEEeeeec-------c----cccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccc
Confidence 346899998751 2 999999999999999999999999999996 776541
Q ss_pred -------Ccc-------EEEECCeeCCCCCc------------------------cEEEEec------------------
Q 024032 124 -------RSG-------LVLFAQTSSGNSSH------------------------TITMYME------------------ 147 (273)
Q Consensus 124 -------~~G-------~I~i~g~~i~~~~~------------------------~i~~v~q------------------ 147 (273)
.+| .|.++|.++....+ .+++..+
T Consensus 569 ~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G 648 (842)
T 2vf7_A 569 HTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEG 648 (842)
T ss_dssp ---CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCS
T ss_pred cccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCC
Confidence 256 67888877642111 0011100
Q ss_pred ----cchhhhc--------------------cCCcccccccccCC-------------HHHHHHHHHHhc----------
Q 024032 148 ----EHNVMRS--------------------LQSGFCVYDSRGFN-------------YNRVHEGLEELS---------- 180 (273)
Q Consensus 148 ----~~~~~~~--------------------~~~~~tv~en~~~~-------------~~~~~~~l~~~~---------- 180 (273)
+...++. .+...++.|+..+. .+++.+.++.++
T Consensus 649 ~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~ 728 (842)
T 2vf7_A 649 WVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPA 728 (842)
T ss_dssp EEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTSBTTCCG
T ss_pred ccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcccccCCc
Confidence 0000000 00112222221111 123455666655
Q ss_pred ccCCHHHHHHHH---h-cCC---CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE--
Q 024032 181 SWMSEGVHHNQR---C-LRS---DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL-- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r---~-l~~---p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl-- 238 (273)
.+||||||||+. + +++ |++|||||||+|||+. +.++++.++ |.|||+| ..||+|++|
T Consensus 729 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~tVIvisHdl~~i~~aDrii~L~p 807 (842)
T 2vf7_A 729 TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GNTVIAVEHKMQVVAASDWVLDIGP 807 (842)
T ss_dssp GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHTTCSEEEEECS
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHhCCEEEEECC
Confidence 689999999873 3 454 7999999999999999 345566655 9999999 558999999
Q ss_pred ----eCCeEeeecChhhhccCh
Q 024032 239 ----KAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 239 ----~~G~i~~~g~~~~l~~~~ 256 (273)
++|+|++.|+++++++.+
T Consensus 808 ~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 808 GAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp SSGGGCCSEEEEECHHHHTTCT
T ss_pred CCCCCCCEEEEEcCHHHHHhCc
Confidence 799999999999998654
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-26 Score=235.53 Aligned_cols=86 Identities=12% Similarity=0.113 Sum_probs=68.8
Q ss_pred HHHHHHHHhc----------ccCCHHHHHHH---Hh-cCC---CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEE
Q 024032 171 RVHEGLEELS----------SWMSEGVHHNQ---RC-LRS---DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMV 227 (273)
Q Consensus 171 ~~~~~l~~~~----------~~LSgGqkq~~---r~-l~~---p~iLlLDEPts~LD~~------~~l~~l~~~~g~tii 227 (273)
++.+.++.++ .+|||||+||+ |+ +++ |++|||||||+|||+. +.++++.++ |.|||
T Consensus 784 ~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~-G~TVI 862 (916)
T 3pih_A 784 RTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-GNTVI 862 (916)
T ss_dssp HHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEE
T ss_pred HHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEE
Confidence 3445666655 67999999987 33 444 5799999999999999 345566655 99999
Q ss_pred Ec-------eeCCEEEEE------eCCeEeeecChhhhccChh
Q 024032 228 VS-------NIAEIYKAL------KAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 228 iv-------~~ad~i~vl------~~G~i~~~g~~~~l~~~~~ 257 (273)
+| ..||+|++| ++|+|++.|+++++++.+.
T Consensus 863 vI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~ 905 (916)
T 3pih_A 863 VIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPH 905 (916)
T ss_dssp EECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTT
T ss_pred EEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCc
Confidence 99 448999999 8999999999999987653
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-28 Score=223.17 Aligned_cols=188 Identities=12% Similarity=0.065 Sum_probs=136.5
Q ss_pred hhhhhhhccchhhhhhhhHHHHHHHhchhhhccCC------CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEE
Q 024032 29 FDECVKLKLDLPNVSTLTPRLRVLREMERLALIAP------DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITIL 102 (273)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~------~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~a 102 (273)
+..|...-..++++..+..|+.++++.++...... .+.++++||+|+|. .++ |+++||+|++|++++
T Consensus 58 v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~---~~v----L~~vsl~i~~Ge~va 130 (305)
T 2v9p_A 58 VKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF---INA----LKLWLKGIPKKNCLA 130 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHH---HHH----HHHHHHTCTTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcC---hhh----hccceEEecCCCEEE
Confidence 44555666777888999999999988654321111 12488999999985 345 999999999999999
Q ss_pred EEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccc-cccCC---HHHHHHHHHH
Q 024032 103 LMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYD-SRGFN---YNRVHEGLEE 178 (273)
Q Consensus 103 ivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~e-n~~~~---~~~~~~~l~~ 178 (273)
|+||||||||||+++|+|++ +|+|. ++++|++.++ ..|+++ |..+. .+.+.+.++.
T Consensus 131 IvGpsGsGKSTLl~lL~gl~--~G~I~-------------~~v~q~~~lf-----~~ti~~~ni~~~~~~~~~~~~~i~~ 190 (305)
T 2v9p_A 131 FIGPPNTGKSMLCNSLIHFL--GGSVL-------------SFANHKSHFW-----LASLADTRAALVDDATHACWRYFDT 190 (305)
T ss_dssp EECSSSSSHHHHHHHHHHHH--TCEEE-------------CGGGTTSGGG-----GGGGTTCSCEEEEEECHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHhhhc--CceEE-------------EEecCccccc-----cccHHHHhhccCccccHHHHHHHHH
Confidence 99999999999999999998 89884 2345665543 236665 53221 1244455555
Q ss_pred -h-----cccCCHHHHHHHHh-cCCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEceeCCEEEEEeCCeEeeecCh
Q 024032 179 -L-----SSWMSEGVHHNQRC-LRSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVSNIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 179 -~-----~~~LSgGqkq~~r~-l~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv~~ad~i~vl~~G~i~~~g~~ 249 (273)
+ +..||||||||.|+ +++|+||| |++||+. ..+..+.. .... +..||+| +|++|++++.|++
T Consensus 191 ~L~~gldg~~LSgGqkQRARAll~~p~iLl----Ts~LD~~~~~~i~~ltH--~~~~--~~~aD~i-vl~~G~iv~~g~~ 261 (305)
T 2v9p_A 191 YLRNALDGYPVSIDRKHKAAVQIKAPPLLV----TSNIDVQAEDRYLYLHS--RVQT--FRFEQPC-TDESGEQPFNITD 261 (305)
T ss_dssp TTTGGGGTCCEECCCSSCCCCEECCCCEEE----EESSCSTTCGGGGGGTT--TEEE--EECCCCC-CCC---CCCCCCH
T ss_pred HhHccCCccCcCHHHHHHHHHHhCCCCEEE----ECCCCHHHHHHHHHHhC--CHHH--HHhCCEE-EEeCCEEEEeCCH
Confidence 2 36899999998555 89999999 9999998 34444432 2332 3789999 9999999999999
Q ss_pred hhh
Q 024032 250 KRL 252 (273)
Q Consensus 250 ~~l 252 (273)
+++
T Consensus 262 ~el 264 (305)
T 2v9p_A 262 ADW 264 (305)
T ss_dssp HHH
T ss_pred HHH
Confidence 988
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-28 Score=232.80 Aligned_cols=169 Identities=8% Similarity=-0.022 Sum_probs=123.9
Q ss_pred eeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc-E-EEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-L-VLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 89 ~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G-~-I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
.++||++++|++++|+||||||||||+|+|+|++. ++| + |+++|. .++.+++++|+..+++. ...+|+.+|.
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~----~~~~i~~vpq~~~l~~~-~~~~tv~eni 203 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD----PQQPIFTVPGCISATPI-SDILDAQLPT 203 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC----TTSCSSSCSSCCEEEEC-CSCCCTTCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC----ccCCeeeeccchhhccc-ccccchhhhh
Confidence 36899999999999999999999999999999999 999 9 999982 35668888888754321 2234555542
Q ss_pred cC---------CHHHHHHHHHHh-------cccCCHHHHHHH----H--hcCCCCE----EEEcC-cCCCCCHH-HHHHH
Q 024032 166 GF---------NYNRVHEGLEEL-------SSWMSEGVHHNQ----R--CLRSDDC----ALMKN-DAEIDDLK-SSPKY 217 (273)
Q Consensus 166 ~~---------~~~~~~~~l~~~-------~~~LSgGqkq~~----r--~l~~p~i----LlLDE-Pts~LD~~-~~l~~ 217 (273)
+ ..+.+.++++.+ ..+||||||||. . ++.+|++ ||||| ||++||+. ..+.+
T Consensus 204 -~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~ 282 (460)
T 2npi_A 204 -WGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHH 282 (460)
T ss_dssp -CSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHH
T ss_pred -cccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHH
Confidence 1 001111122222 357999999976 2 4689999 99999 99999997 55666
Q ss_pred HHhcCCcEEEEc----e----------eCCE-----EEEEe-CCeEeeecChhhhcc--ChhhHHHh-CC
Q 024032 218 VLRRVDFAMVVS----N----------IAEI-----YKALK-AGDSKPLDATKRLFS--APGLRKCS-KI 264 (273)
Q Consensus 218 l~~~~g~tiiiv----~----------~ad~-----i~vl~-~G~i~~~g~~~~l~~--~~~l~~~~-~~ 264 (273)
+.++.+.|+++| . +||+ |++|+ +|+++ .|+++++.+ ...+.++| +.
T Consensus 283 l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~~i~~~f~g~ 351 (460)
T 2npi_A 283 IIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRTSIREYFYGS 351 (460)
T ss_dssp HHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHHHHHHHhCCC
Confidence 666668888887 3 3577 99999 99999 999988742 23455554 53
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-25 Score=227.20 Aligned_cols=180 Identities=17% Similarity=0.185 Sum_probs=120.9
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHh-hCc--------cCc-------c--
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMY-SVL--------SRS-------G-- 126 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~-gl~--------~~~-------G-- 126 (273)
..+++++++. .. |++|||+|++|+++||+|+||||||||+++|+ |.+ ... |
T Consensus 628 ~~L~v~~l~~-------~~----Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~ 696 (972)
T 2r6f_A 628 RWLEVVGARE-------HN----LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE 696 (972)
T ss_dssp CEEEEEEECS-------SS----CCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGG
T ss_pred eEEEEecCcc-------cc----cccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeecccc
Confidence 4688888752 13 99999999999999999999999999999854 322 112 3
Q ss_pred ----EEEECCeeCCCC-C-----------------------ccEEEEeccchhhh----------------ccCC-----
Q 024032 127 ----LVLFAQTSSGNS-S-----------------------HTITMYMEEHNVMR----------------SLQS----- 157 (273)
Q Consensus 127 ----~I~i~g~~i~~~-~-----------------------~~i~~v~q~~~~~~----------------~~~~----- 157 (273)
.|.++|.++... + +.++|++|...... .+.|
T Consensus 697 ~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~ 776 (972)
T 2r6f_A 697 HLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVY 776 (972)
T ss_dssp GCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEE
T ss_pred ccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccc
Confidence 477888776321 1 12234433221100 0000
Q ss_pred -----------------------------cccccccccC----C-HHHHHHHHHHhc----------ccCCHHHHHHH--
Q 024032 158 -----------------------------GFCVYDSRGF----N-YNRVHEGLEELS----------SWMSEGVHHNQ-- 191 (273)
Q Consensus 158 -----------------------------~~tv~en~~~----~-~~~~~~~l~~~~----------~~LSgGqkq~~-- 191 (273)
.+|+.++..+ . ..+..+.++.++ .+||||||||+
T Consensus 777 ~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~L 856 (972)
T 2r6f_A 777 VPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKL 856 (972)
T ss_dssp EECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHH
T ss_pred ccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHH
Confidence 1122222110 0 122345566655 67999999987
Q ss_pred -Hh-cCC---CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE------eCCeEeeec
Q 024032 192 -RC-LRS---DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL------KAGDSKPLD 247 (273)
Q Consensus 192 -r~-l~~---p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl------~~G~i~~~g 247 (273)
++ +++ |++|||||||+|||+. +.++++.++ |.|||+| ..||+|++| ++|+|+..|
T Consensus 857 AraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g 935 (972)
T 2r6f_A 857 AAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVG 935 (972)
T ss_dssp HHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEEE
T ss_pred HHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEec
Confidence 33 444 5999999999999999 345566555 9999999 458999999 789999999
Q ss_pred ChhhhccCh
Q 024032 248 ATKRLFSAP 256 (273)
Q Consensus 248 ~~~~l~~~~ 256 (273)
++++++..+
T Consensus 936 ~~~el~~~~ 944 (972)
T 2r6f_A 936 TPEEVAEVK 944 (972)
T ss_dssp SHHHHHTCT
T ss_pred CHHHHHhCc
Confidence 999998654
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-24 Score=201.30 Aligned_cols=62 Identities=8% Similarity=-0.071 Sum_probs=51.4
Q ss_pred CCHHHHHHHHh----cCCC--CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE----e
Q 024032 183 MSEGVHHNQRC----LRSD--DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL----K 239 (273)
Q Consensus 183 LSgGqkq~~r~----l~~p--~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl----~ 239 (273)
||||||||..+ +.+| ++|||||||++||+. +.++++. + |.|||+| ..||++++| +
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~~~~~~~~d~i~~l~k~~~ 373 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLAQIAARAHHHYKVEKQVE 373 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCHHHHTTCSEEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHHhhcCeEEEEEEecc
Confidence 89999998722 6789 999999999999999 3345554 3 8899988 558999999 9
Q ss_pred CCeEeee
Q 024032 240 AGDSKPL 246 (273)
Q Consensus 240 ~G~i~~~ 246 (273)
+|+++..
T Consensus 374 ~G~~~~~ 380 (415)
T 4aby_A 374 DGRTVSH 380 (415)
T ss_dssp TTEEEEE
T ss_pred CCceEEE
Confidence 9998765
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.8e-24 Score=184.40 Aligned_cols=147 Identities=7% Similarity=0.062 Sum_probs=96.7
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC------CCccEEEEeccchhhhccC----
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN------SSHTITMYMEEHNVMRSLQ---- 156 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~------~~~~i~~v~q~~~~~~~~~---- 156 (273)
.|++|||+|++|++++|+||||||||||+++|+|+++ |.|.+ |.++.. .++.+++++|++..|+.+.
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 88 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNED 88 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHST--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTC
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccc
Confidence 3999999999999999999999999999999999984 99999 776532 2456889999988765431
Q ss_pred --Cccccccc-ccCCHHHHHHHHHHhc-----ccCCHHHHHHHHh---------cCCCCEEEEcCcCCCCCHH--H----
Q 024032 157 --SGFCVYDS-RGFNYNRVHEGLEELS-----SWMSEGVHHNQRC---------LRSDDCALMKNDAEIDDLK--S---- 213 (273)
Q Consensus 157 --~~~tv~en-~~~~~~~~~~~l~~~~-----~~LSgGqkq~~r~---------l~~p~iLlLDEPts~LD~~--~---- 213 (273)
+..++.+| .+.+...+.++++... ..|||||+||..+ +..|++++|||||+++|.. .
T Consensus 89 ~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~ 168 (218)
T 1z6g_A 89 FLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQK 168 (218)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHH
T ss_pred hhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHH
Confidence 11233333 2334556666666543 5679999987522 4578999999999999976 2
Q ss_pred HHHHHHhcCCcEEEEc--eeCCEEEEEeC
Q 024032 214 SPKYVLRRVDFAMVVS--NIAEIYKALKA 240 (273)
Q Consensus 214 ~l~~l~~~~g~tiiiv--~~ad~i~vl~~ 240 (273)
.+..+.+ +.| ++ ..+|.|+++++
T Consensus 169 ~l~~~~~--~~~--~~h~~~~d~iiv~~~ 193 (218)
T 1z6g_A 169 RMEQLNI--ELH--EANLLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHH--HHH--HHTTSCCSEEEECSS
T ss_pred HHHHHHH--HHH--hhcccCCCEEEECCC
Confidence 2333323 334 22 56899888764
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.8e-24 Score=184.37 Aligned_cols=142 Identities=13% Similarity=0.054 Sum_probs=83.3
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECC--eeCCCCCccEEEEeccchhhhcc-CCcccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ--TSSGNSSHTITMYMEEHNVMRSL-QSGFCVYD 163 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g--~~i~~~~~~i~~v~q~~~~~~~~-~~~~tv~e 163 (273)
|+++ ++|++++|+||||||||||+++|+|+ + ++|+|.... .+....++.+++++|++. ..+ .+..++++
T Consensus 16 l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~--enl~~~~~~~~~ 88 (208)
T 3b85_A 16 VDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLN--EKIDPYLRPLHD 88 (208)
T ss_dssp HHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--------CTTTHHHHH
T ss_pred HHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHH--HHHHHHHHHHHH
Confidence 8885 89999999999999999999999999 9 999994311 111234567899999761 111 11111111
Q ss_pred cc-c-CCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHHHHHHHHHh-cCCcEEEEc----eeC
Q 024032 164 SR-G-FNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLKSSPKYVLR-RVDFAMVVS----NIA 232 (273)
Q Consensus 164 n~-~-~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~~~l~~l~~-~~g~tiiiv----~~a 232 (273)
.. . ...+.+.+.++. +.|||||. |+ +.+|++|||||||++ -.......+.+ +.|.||| + ..+
T Consensus 89 ~~~~~~~~~~~~~~l~~-----glGq~qrv~lAraL~~~p~lllLDEPts~-~~~~l~~~l~~l~~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 89 ALRDMVEPEVIPKLMEA-----GIVEVAPLAYMRGRTLNDAFVILDEAQNT-TPAQMKMFLTRLGFGSKMV-VTGDITQV 161 (208)
T ss_dssp HHTTTSCTTHHHHHHHT-----TSEEEEEGGGGTTCCBCSEEEEECSGGGC-CHHHHHHHHTTBCTTCEEE-EEEC----
T ss_pred HHHHhccHHHHHHHHHh-----CCchHHHHHHHHHHhcCCCEEEEeCCccc-cHHHHHHHHHHhcCCCEEE-EECCHHHH
Confidence 10 1 123345556654 23999976 33 789999999999999 33332222221 2388999 7 334
Q ss_pred CEEEEEeCCeE
Q 024032 233 EIYKALKAGDS 243 (273)
Q Consensus 233 d~i~vl~~G~i 243 (273)
++....++|..
T Consensus 162 ~~~~~~~~G~~ 172 (208)
T 3b85_A 162 DLPGGQKSGLR 172 (208)
T ss_dssp --------CCH
T ss_pred hCcCCCCCcHH
Confidence 55555566654
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-21 Score=179.69 Aligned_cols=64 Identities=14% Similarity=-0.002 Sum_probs=51.6
Q ss_pred ccCCHHHHHHHH---h-c------CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEE
Q 024032 181 SWMSEGVHHNQR---C-L------RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKA 237 (273)
Q Consensus 181 ~~LSgGqkq~~r---~-l------~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~v 237 (273)
.+|||||+||.. + + .+|++|||||||++||+. +.++.+.++ |.|||+| ..||++++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~-g~tvi~itH~~~~~~~~d~~~~ 356 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL-NKVIVFITHDREFSEAFDRKLR 356 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGS-SSEEEEEESCHHHHTTCSCEEE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEecchHHHHhCCEEEE
Confidence 469999999862 2 2 699999999999999999 234455444 8999998 45899999
Q ss_pred EeCCeEee
Q 024032 238 LKAGDSKP 245 (273)
Q Consensus 238 l~~G~i~~ 245 (273)
|++|+++.
T Consensus 357 l~~G~i~~ 364 (365)
T 3qf7_A 357 ITGGVVVN 364 (365)
T ss_dssp EETTEEC-
T ss_pred EECCEEEe
Confidence 99999874
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.8e-23 Score=194.42 Aligned_cols=116 Identities=14% Similarity=0.111 Sum_probs=91.6
Q ss_pred eeeeeeEEcCCc--------------------EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEe
Q 024032 88 IQKGGMDIPPVI--------------------TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYM 146 (273)
Q Consensus 88 L~~is~~i~~Ge--------------------~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~ 146 (273)
|++|||+|++|+ ++||+||||||||||+|+|+|+++ ++|+|.++|.++.. .++++
T Consensus 39 l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~----~~~v~ 114 (413)
T 1tq4_A 39 LNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM----ERHPY 114 (413)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C----CCEEE
T ss_pred hhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce----eEEec
Confidence 999999999999 999999999999999999999999 99999999987641 26677
Q ss_pred ccchhhhccCCcccccccccCC--HHHHHHHHHHhc-------ccCCHH--HHHHH---Hh-cC----------CCCEEE
Q 024032 147 EEHNVMRSLQSGFCVYDSRGFN--YNRVHEGLEELS-------SWMSEG--VHHNQ---RC-LR----------SDDCAL 201 (273)
Q Consensus 147 q~~~~~~~~~~~~tv~en~~~~--~~~~~~~l~~~~-------~~LSgG--qkq~~---r~-l~----------~p~iLl 201 (273)
|++. +..+|++||.++. ...+.+.++.++ ..||+| |+|+. ++ ++ +|++++
T Consensus 115 q~~~-----~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlll 189 (413)
T 1tq4_A 115 KHPN-----IPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDI 189 (413)
T ss_dssp ECSS-----CTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHH
T ss_pred cccc-----cCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccc
Confidence 7642 3456889986643 234667777665 238999 98875 22 34 899999
Q ss_pred EcCcCCCCCHH
Q 024032 202 MKNDAEIDDLK 212 (273)
Q Consensus 202 LDEPts~LD~~ 212 (273)
|||||+|||+.
T Consensus 190 LDEPtsgLD~~ 200 (413)
T 1tq4_A 190 TNEADGEPQTF 200 (413)
T ss_dssp HHHHTTCCTTC
T ss_pred cCcccccCCHH
Confidence 99999999998
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-22 Score=166.20 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=74.5
Q ss_pred eeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccCCH
Q 024032 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNY 169 (273)
Q Consensus 90 ~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~ 169 (273)
++||++++||+++|+||||||||||+|++.+-.. .+.+..+ .++++|++... .+..++++.. .
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~-----~~~~d~~------~g~~~~~~~~~---~~~~~~~~~~---~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE-----VISSDFC------RGLMSDDENDQ---TVTGAAFDVL---H 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG-----EEEHHHH------HHHHCSSTTCG---GGHHHHHHHH---H
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe-----EEccHHH------HHHhcCcccch---hhHHHHHHHH---H
Confidence 5899999999999999999999999998653211 1111000 13344443210 1111111110 0
Q ss_pred HHHHHHHHHhc--------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------------------HHH----
Q 024032 170 NRVHEGLEELS--------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------------------SSP---- 215 (273)
Q Consensus 170 ~~~~~~l~~~~--------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~------------------~~l---- 215 (273)
......+ ..+ ...|+|||||. ++ +.+|++|+|||||++||+. ..+
T Consensus 64 ~~~~~~~-~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l 142 (171)
T 4gp7_A 64 YIVSKRL-QLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSI 142 (171)
T ss_dssp HHHHHHH-HTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHH-hCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhh
Confidence 0111111 122 45689999986 33 6899999999999999988 222
Q ss_pred HHHHhcCCcEEEEcee
Q 024032 216 KYVLRRVDFAMVVSNI 231 (273)
Q Consensus 216 ~~l~~~~g~tiiiv~~ 231 (273)
+.+.++ |.|+|++.|
T Consensus 143 ~~l~~~-g~tvi~vtH 157 (171)
T 4gp7_A 143 KGLQRE-GFRYVYILN 157 (171)
T ss_dssp TTHHHH-TCSEEEEEC
T ss_pred hhHHhc-CCcEEEEeC
Confidence 234555 999999843
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-20 Score=173.28 Aligned_cols=62 Identities=15% Similarity=0.060 Sum_probs=47.2
Q ss_pred ccCCHHHHHHH---Hhc-----CCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEE--EE
Q 024032 181 SWMSEGVHHNQ---RCL-----RSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIY--KA 237 (273)
Q Consensus 181 ~~LSgGqkq~~---r~l-----~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i--~v 237 (273)
..||+||||+. +++ .+|++|||||||++||+. +.++++. + +.|+|++ ..||++ ++
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~tH~~~~~~~~d~~~~v~ 295 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-K-HTQFIVITHNKIVMEAADLLHGVT 295 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-T-TSEEEEECCCTTGGGGCSEEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEECCHHHHhhCceEEEEE
Confidence 57999999986 322 678999999999999999 2344443 3 7888888 458986 77
Q ss_pred EeCCeEe
Q 024032 238 LKAGDSK 244 (273)
Q Consensus 238 l~~G~i~ 244 (273)
|.+|...
T Consensus 296 ~~~g~s~ 302 (322)
T 1e69_A 296 MVNGVSA 302 (322)
T ss_dssp ESSSCEE
T ss_pred EeCCEEE
Confidence 8887653
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-21 Score=172.34 Aligned_cols=124 Identities=17% Similarity=0.143 Sum_probs=79.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--CCccEEEEeccchhhhccCCcccccccccCC--------
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN--SSHTITMYMEEHNVMRSLQSGFCVYDSRGFN-------- 168 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~--~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~-------- 168 (273)
.+||+||||||||||+|+|+|+.. ++|+|.++|+++.. .++.+++++|+..+ ...+||.||.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~----~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGV----KMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC--------CCEEEEECCCC--CCSBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCC----cCCceEEechhhhhhcccHHH
Confidence 579999999999999999999999 99999999988753 45679999998775 4456999985431
Q ss_pred HHHHHHH-----HHHhcccCCHHHHHHHHh-cCCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEc
Q 024032 169 YNRVHEG-----LEELSSWMSEGVHHNQRC-LRSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 169 ~~~~~~~-----l~~~~~~LSgGqkq~~r~-l~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv 229 (273)
.+.+.+. .+....+|||||+||... -..+.+++||||+++||+. +.++.+.+. .++|++
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~--~~vI~V 146 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV--VNIIPV 146 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT--SEEEEE
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc--CcEEEE
Confidence 1222222 223337899999887633 1245599999999999999 556777654 666666
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-21 Score=178.75 Aligned_cols=149 Identities=9% Similarity=0.051 Sum_probs=106.5
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC-----------CccEEEEeccch-hhhc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS-----------SHTITMYMEEHN-VMRS 154 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~-----------~~~i~~v~q~~~-~~~~ 154 (273)
+.++||++++|++++|+||||||||||++.|+|+++ ++|+|.+.|.++... +..+++++|++. .++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~- 168 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA- 168 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH-
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH-
Confidence 467899999999999999999999999999999999 999999999887531 235899999876 433
Q ss_pred cCCcccccccccCCHHH-H-HHHHHHh---------cccCCHHHHHHH---Hh-cCCCC--EEEEcCcCCCCCHHHHHHH
Q 024032 155 LQSGFCVYDSRGFNYNR-V-HEGLEEL---------SSWMSEGVHHNQ---RC-LRSDD--CALMKNDAEIDDLKSSPKY 217 (273)
Q Consensus 155 ~~~~~tv~en~~~~~~~-~-~~~l~~~---------~~~LSgGqkq~~---r~-l~~p~--iLlLDEPts~LD~~~~l~~ 217 (273)
..++++|....... . ...++.+ ..+|| +||. |+ +.+|+ +|+|| ||+|||+..+++.
T Consensus 169 ---~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~ 241 (302)
T 3b9q_A 169 ---ATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQARE 241 (302)
T ss_dssp ---HHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHH
Confidence 23666652210000 0 0001111 14577 4554 23 57899 99999 9999999988888
Q ss_pred HHhcCCcEEEEcee-----------------CCEEEEEeCCeEe
Q 024032 218 VLRRVDFAMVVSNI-----------------AEIYKALKAGDSK 244 (273)
Q Consensus 218 l~~~~g~tiiiv~~-----------------ad~i~vl~~G~i~ 244 (273)
+.++.|.|+|++++ ...|.++..|+.+
T Consensus 242 ~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 242 FNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp HHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred HHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 87666899888832 3577888888753
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-22 Score=171.90 Aligned_cols=146 Identities=11% Similarity=-0.025 Sum_probs=90.5
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC-CCCccEEEEeccchhhhccCCccccccc-
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG-NSSHTITMYMEEHNVMRSLQSGFCVYDS- 164 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~-~~~~~i~~v~q~~~~~~~~~~~~tv~en- 164 (273)
++| .+|++|++++|+||||||||||+|+|+|+++ ..+.+.+.+.+.. ..++.+++++|++..++.+ ++.++
T Consensus 12 ~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~----~~~~~l 85 (207)
T 1znw_A 12 ARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQL----IDQGEL 85 (207)
T ss_dssp ---------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHH----HHTTCE
T ss_pred CCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHH----HhcCCc
Confidence 888 7999999999999999999999999999986 3333222222211 2345688999998776543 33332
Q ss_pred ------------ccCCHHHHHHHHHHhc-----ccCCHHHHHHHH------h-cCCCCEEEEcCcCCCC----CHH----
Q 024032 165 ------------RGFNYNRVHEGLEELS-----SWMSEGVHHNQR------C-LRSDDCALMKNDAEID----DLK---- 212 (273)
Q Consensus 165 ------------~~~~~~~~~~~l~~~~-----~~LSgGqkq~~r------~-l~~p~iLlLDEPts~L----D~~---- 212 (273)
.+.+...+.+.++... ..+.|.+.++.+ + +.+|++++|||||+++ |+.
T Consensus 86 ~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~ 165 (207)
T 1znw_A 86 LEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRR 165 (207)
T ss_dssp EEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHH
T ss_pred eeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHH
Confidence 1234455555555531 234555544332 1 5699999999999998 443
Q ss_pred --HHHHHHHhcCCcEEEEc--------eeCCEEEEEe
Q 024032 213 --SSPKYVLRRVDFAMVVS--------NIAEIYKALK 239 (273)
Q Consensus 213 --~~l~~l~~~~g~tiiiv--------~~ad~i~vl~ 239 (273)
+.++++.++.|.|++++ .+||+|++|.
T Consensus 166 l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 166 LDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 33456654458899988 4578888874
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-22 Score=192.27 Aligned_cols=174 Identities=8% Similarity=-0.063 Sum_probs=124.1
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCe---eCCC---
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT---SSGN--- 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~---~i~~--- 137 (273)
..++++++++.|.. +..+ |+++ |+|.+|++++|+||||||||||+++|+|+.+ +.|.|.+.|+ ++.+
T Consensus 130 ~~l~~~~v~~~~~t-g~~v----ld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~ 203 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT-GVRA----INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIE 203 (438)
T ss_dssp CTTTSCCCCSBCCC-SCHH----HHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHH
T ss_pred CceEEeccceecCC-CceE----Eeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHH
Confidence 57889999998853 3345 9999 9999999999999999999999999999999 9999999998 4432
Q ss_pred -------CCccEEEEecc-chhhhccCCcccccccccCCHHHHHHHHHHh------cccCCHHHHHHHH-hcCCCCEEEE
Q 024032 138 -------SSHTITMYMEE-HNVMRSLQSGFCVYDSRGFNYNRVHEGLEEL------SSWMSEGVHHNQR-CLRSDDCALM 202 (273)
Q Consensus 138 -------~~~~i~~v~q~-~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~------~~~LSgGqkq~~r-~l~~p~iLlL 202 (273)
+++.+++++|+ ...++ .+++.+|.....+.....-+.+ ...||+|| ||.. ++.+|++
T Consensus 204 ~~~~~~~l~r~i~~v~q~~~~~~~----~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslAl~~p~~--- 275 (438)
T 2dpy_A 204 NILGPDGRARSVVIAAPADVSPLL----RMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALAIGEPPA--- 275 (438)
T ss_dssp TTTHHHHHHTEEEEEECTTSCHHH----HHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHHTTCCCC---
T ss_pred hhccccccCceEEEEECCCCCHHH----HHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHHhCCCcc---
Confidence 34678999985 33333 3366665322111110000000 15689999 5553 3788888
Q ss_pred cCcCCCCCHH--HHHHHH----Hh---cCCc-----EEEEc------eeCCEEEEEeCCeEeeecChhhhccC
Q 024032 203 KNDAEIDDLK--SSPKYV----LR---RVDF-----AMVVS------NIAEIYKALKAGDSKPLDATKRLFSA 255 (273)
Q Consensus 203 DEPts~LD~~--~~l~~l----~~---~~g~-----tiiiv------~~ad~i~vl~~G~i~~~g~~~~l~~~ 255 (273)
|+|||+. ..+.++ .+ +.|. ||+++ .+||++++|.+|+|+..+++.++...
T Consensus 276 ---t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~~~iad~v~~l~dG~Ivl~~~~~~~~~~ 345 (438)
T 2dpy_A 276 ---TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHY 345 (438)
T ss_dssp ---SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSCCHHHHHHHHHSSEEEEECHHHHHTTCS
T ss_pred ---cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCccchhhceEEEEeCcEEEEeCCHHHccCC
Confidence 9999999 233332 22 1253 77777 33689999999999999998887653
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-20 Score=176.47 Aligned_cols=147 Identities=10% Similarity=0.075 Sum_probs=106.4
Q ss_pred eeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC-----------CccEEEEeccch-hhhcc
Q 024032 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS-----------SHTITMYMEEHN-VMRSL 155 (273)
Q Consensus 89 ~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~-----------~~~i~~v~q~~~-~~~~~ 155 (273)
..+||++++|++++|+||||||||||++.|+|+++ ++|+|.+.|.++... +..+++++|++. .++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p-- 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA-- 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH--
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh--
Confidence 56899999999999999999999999999999999 999999999887431 246899999876 433
Q ss_pred CCcccccccccCCHHH-H-HHHHH---------HhcccCCHHHHHHH---Hh-cCCCC--EEEEcCcCCCCCHHHHHHHH
Q 024032 156 QSGFCVYDSRGFNYNR-V-HEGLE---------ELSSWMSEGVHHNQ---RC-LRSDD--CALMKNDAEIDDLKSSPKYV 218 (273)
Q Consensus 156 ~~~~tv~en~~~~~~~-~-~~~l~---------~~~~~LSgGqkq~~---r~-l~~p~--iLlLDEPts~LD~~~~l~~l 218 (273)
..++++|....... . ...++ ....+|| +||. |+ +.+|+ +|+|| ||+|||+...++.+
T Consensus 226 --~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~ 299 (359)
T 2og2_A 226 --ATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREF 299 (359)
T ss_dssp --HHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHH
T ss_pred --hhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHH
Confidence 23555552110000 0 00011 1114567 4554 33 68999 99999 99999999888888
Q ss_pred HhcCCcEEEEcee-----------------CCEEEEEeCCeE
Q 024032 219 LRRVDFAMVVSNI-----------------AEIYKALKAGDS 243 (273)
Q Consensus 219 ~~~~g~tiiiv~~-----------------ad~i~vl~~G~i 243 (273)
.++.|.|+|++++ ...|.++..|+.
T Consensus 300 ~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 300 NEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 7666899888833 357888888864
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-20 Score=158.39 Aligned_cols=118 Identities=11% Similarity=0.097 Sum_probs=75.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhCccCccEEEECCee---CC--CCCccEEEEeccchhhhccCCcccccccccCCHHHHHH
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTS---SG--NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHE 174 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~---i~--~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~ 174 (273)
+++|+||||||||||+++|+|++. |.++|.+ .. ..++++++++|+......+ ........+ .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~------~~~~~~~~~---~ 68 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI------FSSKFFTSK---K 68 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG----GGEEEEEEEEEC------CCEEEEEETTCCEEE------EEETTCCCS---S
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CcCCCEEhhhhccccccceeEEEeecCcHHHHH------HHhhcCCcc---c
Confidence 689999999999999999999986 2233332 22 3456789998875211111 000011000 0
Q ss_pred HHHHhcccCCHHHHHHH---H------hcCCCCEEEEcC--cCCCCCHH--HHHHHHHhcCCcEEEEce
Q 024032 175 GLEELSSWMSEGVHHNQ---R------CLRSDDCALMKN--DAEIDDLK--SSPKYVLRRVDFAMVVSN 230 (273)
Q Consensus 175 ~l~~~~~~LSgGqkq~~---r------~l~~p~iLlLDE--Pts~LD~~--~~l~~l~~~~g~tiiiv~ 230 (273)
.+......||||||||. + ++.+|++||||| ||++||+. +.+.++.++.+.|+|++.
T Consensus 69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~ 137 (178)
T 1ye8_A 69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATI 137 (178)
T ss_dssp EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEEC
T ss_pred cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEE
Confidence 11222367999999975 4 368999999999 99999998 445555445577677773
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-21 Score=176.86 Aligned_cols=124 Identities=11% Similarity=0.052 Sum_probs=95.9
Q ss_pred CCCceEEEEEEEEeecCCeeeeccceeeeeeE-----------------------EcCCcEEEEEcCCCChHHHHHHHHh
Q 024032 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMD-----------------------IPPVITILLMGFSGSGKSSLVNLMY 119 (273)
Q Consensus 63 ~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~-----------------------i~~Ge~~aivGpnGsGKSTLl~ll~ 119 (273)
....|++++|++.|. ++ +++++|. +++|+++||+||||||||||+++|+
T Consensus 40 ~~~~i~~~~v~~~y~----p~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL----PL----ARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp TTCCCCHHHHHHTHH----HH----HHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh----hH----HHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHH
Confidence 355789999999984 33 6666654 8999999999999999999999999
Q ss_pred hCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc----------CCHHHHHHHHHHhc--------
Q 024032 120 SVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG----------FNYNRVHEGLEELS-------- 180 (273)
Q Consensus 120 gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~----------~~~~~~~~~l~~~~-------- 180 (273)
|+++ ..|. +.+++++|+..+++ . |+.+|.. .+.+.+.+.++.++
T Consensus 112 gll~~~~G~------------~~v~~v~qd~~~~~----~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~ 174 (312)
T 3aez_A 112 ALLARWDHH------------PRVDLVTTDGFLYP----N-AELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACA 174 (312)
T ss_dssp HHHHTSTTC------------CCEEEEEGGGGBCC----H-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSCEEE
T ss_pred hhccccCCC------------CeEEEEecCccCCc----c-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcccCCc
Confidence 9998 6563 45889999877432 2 6666522 23456667777665
Q ss_pred ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCH
Q 024032 181 SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDL 211 (273)
Q Consensus 181 ~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~ 211 (273)
..|||||+||. ++ +.+|+|||||||++.+|+
T Consensus 175 ~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 175 PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 56999998875 23 789999999999999985
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.2e-20 Score=179.23 Aligned_cols=144 Identities=8% Similarity=0.002 Sum_probs=103.0
Q ss_pred ceeeeee-EEcCCcEEEEEcCCCChHHHHHHH--HhhCcc-CccEEEECCeeCCC----CCccEEEEeccchhhhccCCc
Q 024032 87 GIQKGGM-DIPPVITILLMGFSGSGKSSLVNL--MYSVLS-RSGLVLFAQTSSGN----SSHTITMYMEEHNVMRSLQSG 158 (273)
Q Consensus 87 ~L~~is~-~i~~Ge~~aivGpnGsGKSTLl~l--l~gl~~-~~G~I~i~g~~i~~----~~~~i~~v~q~~~~~~~~~~~ 158 (273)
+|++++| .|++|++++|+||||||||||+++ ++|+++ .+|.|+++|++... .++.+++++|++..... ++.
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~-l~~ 105 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK-LFI 105 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS-EEE
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc-EEE
Confidence 3999999 999999999999999999999999 789999 99999999987431 34567889887653211 111
Q ss_pred ccccccc----cCCHHHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCC-----CCHH------HHHHHHHhcCC
Q 024032 159 FCVYDSR----GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEI-----DDLK------SSPKYVLRRVD 223 (273)
Q Consensus 159 ~tv~en~----~~~~~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~-----LD~~------~~l~~l~~~~g 223 (273)
.++.+.. .+..-.+.+.++.....||+|| |++++|||||+. ||+. ++++.++++ |
T Consensus 106 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~---------~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~-g 175 (525)
T 1tf7_A 106 LDASPDPEGQEVVGGFDLSALIERINYAIQKYR---------ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQI-G 175 (525)
T ss_dssp EECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHT---------CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHH-T
T ss_pred EecCcccchhhhhcccCHHHHHHHHHHHHHHcC---------CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHC-C
Confidence 1221110 0111223344555556677775 789999999985 5776 345566655 9
Q ss_pred cEEEEc-----ee------------CCEEEEEeCC
Q 024032 224 FAMVVS-----NI------------AEIYKALKAG 241 (273)
Q Consensus 224 ~tiiiv-----~~------------ad~i~vl~~G 241 (273)
+|||++ .. ||+|++|++|
T Consensus 176 ~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 176 ATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp CEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred CEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 999999 22 8999999984
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-19 Score=184.60 Aligned_cols=154 Identities=13% Similarity=0.052 Sum_probs=97.5
Q ss_pred CceEEEE-----EEEEeecCCeeeeccceeeeeeEEcC-------CcEEEEEcCCCChHHHHHHHHhhCccCccEEEECC
Q 024032 65 GLNELRH-----KFLSYRSGDFWIPIGGIQKGGMDIPP-------VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQ 132 (273)
Q Consensus 65 ~~i~~~~-----v~~~y~~g~~~v~~~~L~~is~~i~~-------Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g 132 (273)
..+++++ +++.|. ++..+ +++++|++++ |++++|+||||||||||||+| |++..
T Consensus 749 ~~l~i~~~rHP~l~~~~~-~~~~v----~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFF-GDDFI----PNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-------- 814 (1022)
T ss_dssp CCEEEEEECCCC-------CCCCC----CEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------
T ss_pred ceEEEEeccccEEEEEec-CCceE----eeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------
Confidence 4689999 988884 34456 9999999987 999999999999999999999 98651
Q ss_pred eeCCCCCccEE-EEeccchhhhccCCcccccccc----cCCHHHHHHHHHHhcccCCHHHHHHH--H-hcCCCCEEEEcC
Q 024032 133 TSSGNSSHTIT-MYMEEHNVMRSLQSGFCVYDSR----GFNYNRVHEGLEELSSWMSEGVHHNQ--R-CLRSDDCALMKN 204 (273)
Q Consensus 133 ~~i~~~~~~i~-~v~q~~~~~~~~~~~~tv~en~----~~~~~~~~~~l~~~~~~LSgGqkq~~--r-~l~~p~iLlLDE 204 (273)
..++| +|+|+... +++.|+. +... .+..-.+++|+++++.. + .+.+|+++||||
T Consensus 815 ------~aqiG~~Vpq~~~~-------l~v~d~I~~rig~~d-----~~~~~~stf~~em~~~a~al~la~~~sLlLLDE 876 (1022)
T 2o8b_B 815 ------MAQMGCYVPAEVCR-------LTPIDRVFTRLGASD-----RIMSGESTFFVELSETASILMHATAHSLVLVDE 876 (1022)
T ss_dssp ------HHTTTCCEESSEEE-------ECCCSBEEEECC--------------CHHHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred ------HhheeEEeccCcCC-------CCHHHHHHHHcCCHH-----HHhhchhhhHHHHHHHHHHHHhCCCCcEEEEEC
Confidence 12234 67776532 2455542 2111 11111256778876633 2 278999999999
Q ss_pred cCCCCCHHH-------HHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEe--eecChhh
Q 024032 205 DAEIDDLKS-------SPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSK--PLDATKR 251 (273)
Q Consensus 205 Pts~LD~~~-------~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~--~~g~~~~ 251 (273)
|++|+|+.. .++.+.++.|.++|++ ..+|++.++ +|++. ..|.+++
T Consensus 877 p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 877 LGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-------
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCccc
Confidence 999999883 3455665448888888 346888776 58877 4454443
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-20 Score=169.96 Aligned_cols=117 Identities=9% Similarity=0.131 Sum_probs=88.4
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccEEEEeccchhhhccCCcccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTITMYMEEHNVMRSLQSGFCVYD 163 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i~~v~q~~~~~~~~~~~~tv~e 163 (273)
+++++|.+++|++++|+||||||||||+++|+|+++ ++|.|.++|.+... .++.++++.
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~----------------- 223 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFF----------------- 223 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEEC-----------------
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEe-----------------
Confidence 899999999999999999999999999999999999 99999999865211 112222111
Q ss_pred cccCCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHHHHHHHHHhcCCcEEEEc-------eeC
Q 024032 164 SRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS-------NIA 232 (273)
Q Consensus 164 n~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~~~l~~l~~~~g~tiiiv-------~~a 232 (273)
+ |||+|+. ++ ..+|++|||||||+. ...+.++.+... +.|++++ ..+
T Consensus 224 ----------------g----gg~~~r~~la~aL~~~p~ilildE~~~~-e~~~~l~~~~~g-~~tvi~t~H~~~~~~~~ 281 (330)
T 2pt7_A 224 ----------------G----GNITSADCLKSCLRMRPDRIILGELRSS-EAYDFYNVLCSG-HKGTLTTLHAGSSEEAF 281 (330)
T ss_dssp ----------------B----TTBCHHHHHHHHTTSCCSEEEECCCCST-HHHHHHHHHHTT-CCCEEEEEECSSHHHHH
T ss_pred ----------------C----CChhHHHHHHHHhhhCCCEEEEcCCChH-HHHHHHHHHhcC-CCEEEEEEcccHHHHHh
Confidence 0 7888875 33 679999999999983 233566666542 3467777 346
Q ss_pred CEEEEEeCCeE
Q 024032 233 EIYKALKAGDS 243 (273)
Q Consensus 233 d~i~vl~~G~i 243 (273)
||+++|.+|..
T Consensus 282 dri~~l~~g~~ 292 (330)
T 2pt7_A 282 IRLANMSSSNS 292 (330)
T ss_dssp HHHHHHHHTSG
T ss_pred hhheehhcCCc
Confidence 89999988864
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.5e-19 Score=154.58 Aligned_cols=129 Identities=12% Similarity=0.117 Sum_probs=80.9
Q ss_pred CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCc
Q 024032 79 GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158 (273)
Q Consensus 79 g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~ 158 (273)
+++++ |+++||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.+++++|+. .+ ..
T Consensus 10 ~~~~~----l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l---G~~~~~-----~~~~~i~~v~~d~-~~----~~ 72 (245)
T 2jeo_A 10 GVDLG----TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL---GQNEVE-----QRQRKVVILSQDR-FY----KV 72 (245)
T ss_dssp -----------------CCSEEEEEECSTTSSHHHHHHHHHHHH---TGGGSC-----GGGCSEEEEEGGG-GB----CC
T ss_pred CCcee----ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh---chhccc-----ccCCceEEEeCCc-Cc----cc
Confidence 45556 99999999999999999999999999999999976 444343 2456788999884 32 23
Q ss_pred cccccc------------c-cCCHHHHHHHHHHhc-------ccCCHHHHHHH--Hh-cCCCCEEEEcCcCCCCCHHHHH
Q 024032 159 FCVYDS------------R-GFNYNRVHEGLEELS-------SWMSEGVHHNQ--RC-LRSDDCALMKNDAEIDDLKSSP 215 (273)
Q Consensus 159 ~tv~en------------~-~~~~~~~~~~l~~~~-------~~LSgGqkq~~--r~-l~~p~iLlLDEPts~LD~~~~l 215 (273)
+|+.++ . ..+.+.+.+.++.+. ..||+||+||. ++ +.+|+++|||||....+.. +
T Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~--l 150 (245)
T 2jeo_A 73 LTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQE--I 150 (245)
T ss_dssp CCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHH--H
T ss_pred cCHhHhhhhhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCceEEecCCCEEEEeCccccccHH--H
Confidence 344433 1 123444556666543 57999998765 22 6789999999998877754 2
Q ss_pred HHHHhcCCcEEEEc
Q 024032 216 KYVLRRVDFAMVVS 229 (273)
Q Consensus 216 ~~l~~~~g~tiiiv 229 (273)
. +..+.+|+++
T Consensus 151 ~---~~~~~~i~v~ 161 (245)
T 2jeo_A 151 R---DMFHLRLFVD 161 (245)
T ss_dssp H---TTCSEEEEEE
T ss_pred H---HhcCeEEEEE
Confidence 2 2237788887
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.7e-21 Score=175.95 Aligned_cols=170 Identities=10% Similarity=-0.034 Sum_probs=112.2
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC------
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------ 137 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------ 137 (273)
..++.+++++.|..+ ..+ |+++ |+|.+|++++|+||||||||||+++|+|+.. +.|.|.+.|++..+
T Consensus 44 ~~i~~~~l~~~~~tg-~~a----ld~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~ 117 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRA----IDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLA 117 (347)
T ss_dssp CSTTCCCCCSEECCS-CHH----HHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHT
T ss_pred CCeeecccceecCCC-CEE----EEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHH
Confidence 468889999988533 334 9999 9999999999999999999999999999999 99999998875321
Q ss_pred ------CCccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHh----------cccCCHHHHHHH-HhcCCCCEE
Q 024032 138 ------SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEEL----------SSWMSEGVHHNQ-RCLRSDDCA 200 (273)
Q Consensus 138 ------~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~----------~~~LSgGqkq~~-r~l~~p~iL 200 (273)
..+.+.++.|..... ....++..+ .-.+.+..... ...||+|| |+. .++.+|++
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~---~~r~~~~~~----~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~lal~~p~~- 188 (347)
T 2obl_A 118 LLPQSTLSKCVLVVTTSDRPA---LERMKAAFT----ATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLASGEPDV- 188 (347)
T ss_dssp TSCHHHHTTEEEEEECTTSCH---HHHHHHHHH----HHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHHTTCCCC-
T ss_pred hhhhhhhhceEEEEECCCCCH---HHHHHHHHH----HHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHHcCCCCc-
Confidence 122344444321100 000000000 00001111100 15689999 555 33778877
Q ss_pred EEcCcCCCCCHH--HHHHH----HHh-cCCc-----EEEEc------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 201 LMKNDAEIDDLK--SSPKY----VLR-RVDF-----AMVVS------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 201 lLDEPts~LD~~--~~l~~----l~~-~~g~-----tiiiv------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|+||||. ..+.+ +.+ +.|. ||+++ .+||++++|.+|+|+..++++++..
T Consensus 189 -----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~~i~d~v~~i~dG~Ivl~~~l~~~~~ 255 (347)
T 2obl_A 189 -----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIVLTRELAEENH 255 (347)
T ss_dssp -----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCCHHHHHHHHHCSEEEEBCHHHHTTTC
T ss_pred -----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCChhhhheEEeeCcEEEEeCCHHHcCC
Confidence 9999999 22333 322 2365 67766 3579999999999999998888754
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-17 Score=151.22 Aligned_cols=71 Identities=17% Similarity=0.087 Sum_probs=56.0
Q ss_pred cCCHHHHHHHH---h-c---------CCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEce----eCCEEEEEeCCe
Q 024032 182 WMSEGVHHNQR---C-L---------RSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVSN----IAEIYKALKAGD 242 (273)
Q Consensus 182 ~LSgGqkq~~r---~-l---------~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv~----~ad~i~vl~~G~ 242 (273)
.||+||||+.. + + .+|++|||||||++||+. ..+.++..+.+.|+|++. .+|++++|++|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~~~~~~~i~~l~~G~ 344 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTELAPGAALTLRAQAGR 344 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSCCTTCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEeccccCCEEEEEECCE
Confidence 69999999762 2 4 699999999999999999 333333333346777774 589999999999
Q ss_pred EeeecChhhh
Q 024032 243 SKPLDATKRL 252 (273)
Q Consensus 243 i~~~g~~~~l 252 (273)
++..|+++++
T Consensus 345 i~~~g~~~~~ 354 (359)
T 2o5v_A 345 FTPVADEEMQ 354 (359)
T ss_dssp EEECCCTTTS
T ss_pred EEecCCHHHH
Confidence 9999999886
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-18 Score=175.90 Aligned_cols=156 Identities=10% Similarity=0.098 Sum_probs=94.0
Q ss_pred ceEEEEEEEEeec---CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCCCCc
Q 024032 66 LNELRHKFLSYRS---GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSH 140 (273)
Q Consensus 66 ~i~~~~v~~~y~~---g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~~~~ 140 (273)
.+++++...-+-. ++..+ +++++|++++|++++|+||||||||||||++++..- ..|... .....
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v----~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~v------pa~~~ 700 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFI----PNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV------PCESA 700 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCC----CEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCB------SEEEE
T ss_pred ceEeecCccchhhhcCCceee----cccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcc------ccccc
Confidence 4666655443311 12344 999999999999999999999999999999944321 223110 00000
Q ss_pred cEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHH---HHHh---cCCCCEEEEcCcCCCCCHHH-
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHH---NQRC---LRSDDCALMKNDAEIDDLKS- 213 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq---~~r~---l~~p~iLlLDEPts~LD~~~- 213 (273)
.++. +. .+....+.. +.+...+|+|+++ ..++ +.+|+++||||||+|+|+..
T Consensus 701 ~~~~-------~d------~i~~~ig~~--------d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~ 759 (934)
T 3thx_A 701 EVSI-------VD------CILARVGAG--------DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDG 759 (934)
T ss_dssp EEEC-------CS------EEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHH
T ss_pred cchH-------HH------HHHHhcCch--------hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHH
Confidence 0000 00 011111111 1122335555544 3322 68999999999999999982
Q ss_pred ------HHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhh
Q 024032 214 ------SPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 214 ------~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
.++.+.++.|.|+|++ .+||++..+.+|++...++.+++
T Consensus 760 ~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 760 FGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 2345555458899888 45788888999999887776665
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-18 Score=158.11 Aligned_cols=143 Identities=17% Similarity=0.118 Sum_probs=68.4
Q ss_pred EEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC-cc-CccEEEECCeeCCC--CCccEEEE
Q 024032 70 RHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV-LS-RSGLVLFAQTSSGN--SSHTITMY 145 (273)
Q Consensus 70 ~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl-~~-~~G~I~i~g~~i~~--~~~~i~~v 145 (273)
.|+++.| +++.+ +++++|+| +|+||||||||||+++|+|. +. ++| |.++|.++.. ..+.++++
T Consensus 2 ~~l~~~~--~~~~~----l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQV--HRKSV----KKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVE 68 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEE
T ss_pred CCCcceE--CCEEE----EcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEE
Confidence 3566776 45566 99999998 99999999999999999997 66 888 8888876542 23456778
Q ss_pred eccchhhhccCCcccccccccCCH-----HH-------HHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCC-CCHH
Q 024032 146 MEEHNVMRSLQSGFCVYDSRGFNY-----NR-------VHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEI-DDLK 212 (273)
Q Consensus 146 ~q~~~~~~~~~~~~tv~en~~~~~-----~~-------~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~-LD~~ 212 (273)
+|.... ...++++|+.++.. +. +.+..+.....+||||||+....+---++++||||++ ||+.
T Consensus 69 ~q~~~~----~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~ 144 (301)
T 2qnr_A 69 IEERGV----KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPL 144 (301)
T ss_dssp EC---C----CEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHH
T ss_pred ecCCCc----ccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHH
Confidence 876654 34558888866511 11 1122223447899999765321111129999999985 9998
Q ss_pred --HHHHHHHhcCCcEEEEc
Q 024032 213 --SSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 213 --~~l~~l~~~~g~tiiiv 229 (273)
+.++.+.++.+.++++.
T Consensus 145 ~~~~l~~l~~~~~iilV~~ 163 (301)
T 2qnr_A 145 DVAFMKAIHNKVNIVPVIA 163 (301)
T ss_dssp HHHHHHHHTTTSCEEEEEC
T ss_pred HHHHHHHHHhcCCEEEEEE
Confidence 44556654334455544
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-18 Score=156.08 Aligned_cols=148 Identities=16% Similarity=0.106 Sum_probs=90.2
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc-EEEECCeeCCC--CCccEEEEeccchhhhccCCcccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVLFAQTSSGN--SSHTITMYMEEHNVMRSLQSGFCVYD 163 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G-~I~i~g~~i~~--~~~~i~~v~q~~~~~~~~~~~~tv~e 163 (273)
|+++++.+++|++++|+||||||||||++.|+|.+. .+| .|.+.+..... .++++..+.++... ++.+
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~--------~~~~ 96 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRL--------RQSD 96 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCG--------GGCH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCCh--------hhcc
Confidence 999999999999999999999999999999999988 777 67554333221 11222222222111 1111
Q ss_pred c---ccCCHHHHHHHHHHh----c-------ccCCHHHH-HHHHh---cCCCCEEEEcCcCC---C---CCH-H------
Q 024032 164 S---RGFNYNRVHEGLEEL----S-------SWMSEGVH-HNQRC---LRSDDCALMKNDAE---I---DDL-K------ 212 (273)
Q Consensus 164 n---~~~~~~~~~~~l~~~----~-------~~LSgGqk-q~~r~---l~~p~iLlLDEPts---~---LD~-~------ 212 (273)
+ ...+.++..++++.+ . ..+|.++. |+.++ ..+|++||+||||+ + +|. .
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~ 176 (296)
T 1cr0_A 97 SLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLM 176 (296)
T ss_dssp HHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHH
Confidence 1 011111222222222 1 34788874 44432 67999999999999 5 454 2
Q ss_pred HHHHHHHhcCCcEEEEc---e---------------------------eCCEEEEEeCCeE
Q 024032 213 SSPKYVLRRVDFAMVVS---N---------------------------IAEIYKALKAGDS 243 (273)
Q Consensus 213 ~~l~~l~~~~g~tiiiv---~---------------------------~ad~i~vl~~G~i 243 (273)
..++.++++.|+|||++ . .||+|++|++|+.
T Consensus 177 ~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 177 TKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 33556666568999988 1 3689999998875
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.7e-18 Score=144.65 Aligned_cols=131 Identities=14% Similarity=0.100 Sum_probs=81.8
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCcc---Ccc-----EEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSG-----LVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~---~~G-----~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
-|++|++++|+||||||||||+++|+|++. .+| .+++++.+... .+++++++|...+++ .++.+|.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~-~~~i~~~~~~~~~~~-----~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-PERIREIAQNRGLDP-----DEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC-HHHHHHHHHHTTSCH-----HHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC-HHHHHHHHHHcCCCH-----HHHhhcE
Confidence 689999999999999999999999999543 233 66776654211 123344444443221 1445542
Q ss_pred cCCHHHHHHHHHHhcccCCHHHHHH----H-----Hh---cCCCCEEEEcCcCCCCCHH------------------HHH
Q 024032 166 GFNYNRVHEGLEELSSWMSEGVHHN----Q-----RC---LRSDDCALMKNDAEIDDLK------------------SSP 215 (273)
Q Consensus 166 ~~~~~~~~~~l~~~~~~LSgGqkq~----~-----r~---l~~p~iLlLDEPts~LD~~------------------~~l 215 (273)
.+. ..++.++++. . ++ ..+|++++||||++++|+. ..+
T Consensus 95 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l 162 (231)
T 4a74_A 95 YVA------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADL 162 (231)
T ss_dssp EEE------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHH
T ss_pred EEE------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHH
Confidence 110 1112221110 0 11 3589999999999999982 223
Q ss_pred HHHHhcCCcEEEEcee------------CCEEEEEeCCe
Q 024032 216 KYVLRRVDFAMVVSNI------------AEIYKALKAGD 242 (273)
Q Consensus 216 ~~l~~~~g~tiiiv~~------------ad~i~vl~~G~ 242 (273)
..+.++.|.|||++.| ||++++|++|+
T Consensus 163 ~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 163 HRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 4455555999999944 68888888753
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-19 Score=152.53 Aligned_cols=141 Identities=13% Similarity=0.073 Sum_probs=93.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCC---CCCccEEEEeccchhhhccCCcccccccccCCHHH--H
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSG---NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNR--V 172 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~---~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~--~ 172 (273)
|++++|+||||||||||+++|+|+++++| |.++|.+.. ..++++++++|+..-.. +...+..+.... .
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g~~------~~l~~~~~~~~~~~~ 73 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGFYTEEVRQGGRRIGFDVVTLSGTR------GPLSRVGLEPPPGKR 73 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEEECCEEETTSSEEEEEEEETTSCE------EEEEECCCCCCSSSC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcccCC-EEEcCEecchhHhhhceEEEEEEecccce------ehhhcccccCCcccc
Confidence 78999999999999999999999988778 999887664 35678899998752100 111111110000 0
Q ss_pred HHHHHHhcccCCHHHHHHH----H----hcCCCCEEEEcC--cCCCCCHH--HHHHHHHhcCCcEEEE--c--ee-----
Q 024032 173 HEGLEELSSWMSEGVHHNQ----R----CLRSDDCALMKN--DAEIDDLK--SSPKYVLRRVDFAMVV--S--NI----- 231 (273)
Q Consensus 173 ~~~l~~~~~~LSgGqkq~~----r----~l~~p~iLlLDE--Pts~LD~~--~~l~~l~~~~g~tiii--v--~~----- 231 (273)
...+...+..+|+|||++. + .+.+|++||||| |+..+|+. +.+.++.+. ..++|+ + .|
T Consensus 74 ~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~-~~~~ilgti~vsh~~~~~ 152 (189)
T 2i3b_A 74 ECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST-PGTIILGTIPVPKGKPLA 152 (189)
T ss_dssp CEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC-SSCCEEEECCCCCSSCCT
T ss_pred ccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC-CCcEEEEEeecCCCCchH
Confidence 0011122356889997654 2 257899999999 89888877 566666655 445553 2 12
Q ss_pred -CCEEEEEeCCeEeee
Q 024032 232 -AEIYKALKAGDSKPL 246 (273)
Q Consensus 232 -ad~i~vl~~G~i~~~ 246 (273)
.|+|..+++|+|+.-
T Consensus 153 ~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 153 LVEEIRNRKDVKVFNV 168 (189)
T ss_dssp THHHHHTTCCSEEEEC
T ss_pred HHHHHeecCCcEEEEe
Confidence 367888889998764
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-17 Score=168.43 Aligned_cols=152 Identities=9% Similarity=-0.002 Sum_probs=90.1
Q ss_pred CceEEEEEEEEeec---CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCCCC
Q 024032 65 GLNELRHKFLSYRS---GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSS 139 (273)
Q Consensus 65 ~~i~~~~v~~~y~~---g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~~~ 139 (273)
..+++++...-.-. ++..+ +++++|+ ++|++++|+||||||||||||+|+|+.. ..|. .+....
T Consensus 576 ~~i~i~~~rHP~le~~~~~~~v----lndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa~~ 644 (800)
T 1wb9_A 576 PGIRITEGRHPVVEQVLNEPFI----ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPAQK 644 (800)
T ss_dssp SCEEEEEECCTTHHHHCSSCCC----CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSSSE
T ss_pred CCEEEEeccccEEEccCCCcee----eeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccchhc
Confidence 34666655332211 33445 9999999 9999999999999999999999999754 4442 111112
Q ss_pred ccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHHH---hcCCCCEEEEcCcCCCCCHH----
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQR---CLRSDDCALMKNDAEIDDLK---- 212 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~r---~l~~p~iLlLDEPts~LD~~---- 212 (273)
..++++.| + +..+++.+|... -.+.+|+++++... .+.+|+++|||||++|+|+.
T Consensus 645 ~~i~~~~~---i----~~~~~~~d~l~~-----------~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~ 706 (800)
T 1wb9_A 645 VEIGPIDR---I----FTRVGAADDLAS-----------GRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLS 706 (800)
T ss_dssp EEECCCCE---E----EEEEC----------------------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHH
T ss_pred ccceeHHH---H----HhhCCHHHHHHh-----------hhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHH
Confidence 23333322 1 222344443211 11346777765432 27899999999999998886
Q ss_pred ---HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEee
Q 024032 213 ---SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKP 245 (273)
Q Consensus 213 ---~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~ 245 (273)
..++.+.++.|.++|++ .+||++..+.+|++..
T Consensus 707 i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~ 749 (800)
T 1wb9_A 707 LAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDA 749 (800)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEE
T ss_pred HHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEE
Confidence 23455655348888888 2345544455555443
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.5e-17 Score=166.87 Aligned_cols=118 Identities=13% Similarity=0.123 Sum_probs=75.6
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
+++++|++++|++++|+||||||||||||+++++.. ..|.. +......++.+ ..+ +..+.+.+
T Consensus 663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~------vpa~~~~i~~~---d~i----~~~ig~~d-- 727 (918)
T 3thx_B 663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY------VPAEEATIGIV---DGI----FTRMGAAD-- 727 (918)
T ss_dssp CEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC------BSSSEEEEECC---SEE----EEEC------
T ss_pred cccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc------ccchhhhhhHH---HHH----HHhCChHH--
Confidence 999999999999999999999999999999987643 22321 10000111110 011 11111121
Q ss_pred cCCHHHHHHHHHHhcccCCHHHHHHHHh---cCCCCEEEEcCcCCCCCHHH-------HHHHHHhcCCcEEEEc
Q 024032 166 GFNYNRVHEGLEELSSWMSEGVHHNQRC---LRSDDCALMKNDAEIDDLKS-------SPKYVLRRVDFAMVVS 229 (273)
Q Consensus 166 ~~~~~~~~~~l~~~~~~LSgGqkq~~r~---l~~p~iLlLDEPts~LD~~~-------~l~~l~~~~g~tiiiv 229 (273)
.+..-.+.+|+||+|+..+ +.+|+++||||||+|||+.. .++.+.++.|.|+|++
T Consensus 728 ---------~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~v 792 (918)
T 3thx_B 728 ---------NIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFV 792 (918)
T ss_dssp ---------------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ---------HHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 1222236789999886533 78999999999999999982 2344554458999998
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-18 Score=169.64 Aligned_cols=167 Identities=14% Similarity=0.060 Sum_probs=95.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeee----------eeEEcCCcEEEEEcCCCChHHHHHHHHhhCc-c-CccEEEECCe
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKG----------GMDIPPVITILLMGFSGSGKSSLVNLMYSVL-S-RSGLVLFAQT 133 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~i----------s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~-~-~~G~I~i~g~ 133 (273)
.++++++++.|....+++ |+.+ +|+++. +||+||||||||||+++|+|++ + ++|.|+++|.
T Consensus 10 ~i~~~~l~~~~~~~~r~l----l~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~ 82 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPC----IDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPL 82 (608)
T ss_dssp ----------CHHHHHHH----HHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCE
T ss_pred hhhhhhhhHHHHHHHHHH----HHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCE
Confidence 577888998886432333 4333 366665 9999999999999999999997 4 6999999998
Q ss_pred eCC--------CCCccEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhc---ccCCHHHHHHHHh----cCCCC
Q 024032 134 SSG--------NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELS---SWMSEGVHHNQRC----LRSDD 198 (273)
Q Consensus 134 ~i~--------~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~---~~LSgGqkq~~r~----l~~p~ 198 (273)
++. .+++.+++++|+..+ +...||.+|... ....++ ..+|. +..++ ...|+
T Consensus 83 ~i~~~~~~~~~~~~~~i~~v~Q~~~l----~~~~tv~e~i~~-------~~~~~~~~~~~~s~---~~i~l~i~~~~~p~ 148 (608)
T 3szr_A 83 VLKLKKLVNEDKWRGKVSYQDYEIEI----SDASEVEKEINK-------AQNAIAGEGMGISH---ELITLEISSRDVPD 148 (608)
T ss_dssp EEEEEECSSSSCCEEEESCC---CCC----CCHHHHHTTHHH-------HHHHHHCSSSCCCS---CCEEEEEEESSSCC
T ss_pred EEEEecCCccccceeEEeeecccccC----CCHHHHHHHHHH-------HHHHhcCCccccch---HHHHHHhcCCCCCc
Confidence 852 356778899998765 344578776432 222222 22221 11111 46899
Q ss_pred EEEEcCc------CCCCCHH------HHHHHHHh-cCCcEEEEce--------------------eCCEEEEEeCCeEee
Q 024032 199 CALMKND------AEIDDLK------SSPKYVLR-RVDFAMVVSN--------------------IAEIYKALKAGDSKP 245 (273)
Q Consensus 199 iLlLDEP------ts~LD~~------~~l~~l~~-~~g~tiiiv~--------------------~ad~i~vl~~G~i~~ 245 (273)
++|+||| |++||+. ++++.+.+ ..+.+++++. ....|+|+.++.++.
T Consensus 149 LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 149 LTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVD 228 (608)
T ss_dssp EEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSS
T ss_pred eeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcC
Confidence 9999999 9999998 23444332 2244455541 124688999999888
Q ss_pred ecChhhhc
Q 024032 246 LDATKRLF 253 (273)
Q Consensus 246 ~g~~~~l~ 253 (273)
.|+.+++.
T Consensus 229 ~g~~~~~~ 236 (608)
T 3szr_A 229 KGTEDKVV 236 (608)
T ss_dssp SSSTTCCC
T ss_pred cccHHHHH
Confidence 88765443
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-17 Score=153.49 Aligned_cols=152 Identities=16% Similarity=0.079 Sum_probs=98.4
Q ss_pred eeee-eeEEcCCcEEEEEcCCCChHHHHHHHHhhCc--c-Cc----cE-EEECCeeCCCCCccEEEEeccchhhhccCCc
Q 024032 88 IQKG-GMDIPPVITILLMGFSGSGKSSLVNLMYSVL--S-RS----GL-VLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158 (273)
Q Consensus 88 L~~i-s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~--~-~~----G~-I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~ 158 (273)
|+.+ ++.|++|++++|+||||||||||++.+++.. + ++ |. |++++.+.. .++++++++|...++ .
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~-----~ 193 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLD-----P 193 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTTCC-----H
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCC-----H
Confidence 7766 7899999999999999999999999999987 4 44 67 899887642 234556666665432 1
Q ss_pred ccccccccC----CHHHHH---HHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHH---------------H---
Q 024032 159 FCVYDSRGF----NYNRVH---EGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK---------------S--- 213 (273)
Q Consensus 159 ~tv~en~~~----~~~~~~---~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~---------------~--- 213 (273)
.++.+|..+ ...... +.+..+...||+|| .+|++||+||||+++|+. .
T Consensus 194 ~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~-------~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~ 266 (349)
T 1pzn_A 194 DEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTD-------RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLA 266 (349)
T ss_dssp HHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSS-------SCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHH
T ss_pred HHHhhCEEEEecCChHHHHHHHHHHHHHHHHhcccc-------CCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHH
Confidence 256665321 222222 22333336678877 789999999999999884 1
Q ss_pred HHHHHHhcCCcEEEEceeC--------CEEEEEeCCeEeeecChhhh
Q 024032 214 SPKYVLRRVDFAMVVSNIA--------EIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 214 ~l~~l~~~~g~tiiiv~~a--------d~i~vl~~G~i~~~g~~~~l 252 (273)
.++.+.++.|.|||++++. +...+...|++++++....+
T Consensus 267 ~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL 313 (349)
T 1pzn_A 267 DLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRV 313 (349)
T ss_dssp HHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEE
T ss_pred HHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEE
Confidence 1344555568999999332 12345567777766654444
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-17 Score=155.85 Aligned_cols=152 Identities=13% Similarity=0.097 Sum_probs=87.6
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc--EEEECCeeCCCCCc
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG--LVLFAQTSSGNSSH 140 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G--~I~i~g~~i~~~~~ 140 (273)
.+.+++++++++| +++.+ +++++|+| +|+||||||||||+++|+|+.. ..| .+.+++.. .....
T Consensus 9 ~~~l~~~~l~~~y--~~~~v----l~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~-t~~~~ 75 (418)
T 2qag_C 9 EGYVGFANLPNQV--YRKSV----KRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK-TVQVE 75 (418)
T ss_dssp ------CCCCCCT--TTTTC----C-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC------CCEEE
T ss_pred cCcEEEEecceeE--CCEEE----ecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc-ceeee
Confidence 3568899999888 44556 99999998 9999999999999999999876 554 22221111 11224
Q ss_pred cEEEEeccchhhhccCCcccccccccCCHH-----HHHHHHHHhcccCCHHHHHHH---Hh-cCCCC---EEEEcCcC-C
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYN-----RVHEGLEELSSWMSEGVHHNQ---RC-LRSDD---CALMKNDA-E 207 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~~~~-----~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~---iLlLDEPt-s 207 (273)
.+++++|.... ...+|++||.++... ....+.+.+...++.+++|+. |+ +.+|+ +|++|||| .
T Consensus 76 ~i~~v~q~~~~----~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~ 151 (418)
T 2qag_C 76 QSKVLIKEGGV----QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH 151 (418)
T ss_dssp EEECC----------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CC
T ss_pred eEEEEEecCCc----ccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCccc
Confidence 56777776654 345699999765321 112233333345566665543 33 67999 99999999 6
Q ss_pred CCCHHH--HHHHHHhcCCcEEEEc-eeCCE
Q 024032 208 IDDLKS--SPKYVLRRVDFAMVVS-NIAEI 234 (273)
Q Consensus 208 ~LD~~~--~l~~l~~~~g~tiiiv-~~ad~ 234 (273)
+||+.. .++.+.. +.++|+| +.+|.
T Consensus 152 ~L~~~d~~~lk~L~~--~v~iIlVinK~Dl 179 (418)
T 2qag_C 152 GLKPLDIEFMKRLHE--KVNIIPLIAKADT 179 (418)
T ss_dssp SCCHHHHHHHHHHTT--TSEEEEEEESTTS
T ss_pred CCCHHHHHHHHHHhc--cCcEEEEEEcccC
Confidence 999984 5666654 6776666 55553
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-16 Score=161.49 Aligned_cols=132 Identities=9% Similarity=0.018 Sum_probs=87.0
Q ss_pred CCceEEEEEEEEeec-CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCeeCCCCCc
Q 024032 64 DGLNELRHKFLSYRS-GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTSSGNSSH 140 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~-g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~i~~~~~ 140 (273)
.+.+++++...-+-. ++..+ ++|+||+ |++++|+||||||||||+|+|+|+.. ..|.+. ...+.
T Consensus 548 ~~~i~i~~~rHP~le~~~~~v----l~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------pa~~~ 614 (765)
T 1ewq_A 548 GDRLQIRAGRHPVVERRTEFV----PNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------PAEEA 614 (765)
T ss_dssp SSSEEEEEECCTTGGGTSCCC----CEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------SSSEE
T ss_pred CCcEEEEEeECceEccCCceE----eeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------ehhcc
Confidence 445777776332211 33455 9999999 99999999999999999999999864 777652 11223
Q ss_pred cEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHH---Hh---cCCCCEEEEcCc---CCCCCH
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ---RC---LRSDDCALMKND---AEIDDL 211 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~---r~---l~~p~iLlLDEP---ts~LD~ 211 (273)
.+++++| + +..+++.||.. ..+|+|++++. ++ +.+|+++||||| |++||+
T Consensus 615 ~i~~v~~---i----~~~~~~~d~l~--------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~ 673 (765)
T 1ewq_A 615 HLPLFDG---I----YTRIGASDDLA--------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDG 673 (765)
T ss_dssp EECCCSE---E----EEECCC--------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHH
T ss_pred ceeeHHH---h----hccCCHHHHHH--------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCH
Confidence 4554443 2 22335555422 24788887754 22 689999999999 999998
Q ss_pred HH----HHHHHHhcCCcEEEEce
Q 024032 212 KS----SPKYVLRRVDFAMVVSN 230 (273)
Q Consensus 212 ~~----~l~~l~~~~g~tiiiv~ 230 (273)
.. .+..+.+ .|.|+|++.
T Consensus 674 ~~~~~~i~~~L~~-~g~~vl~~T 695 (765)
T 1ewq_A 674 VAIATAVAEALHE-RRAYTLFAT 695 (765)
T ss_dssp HHHHHHHHHHHHH-HTCEEEEEC
T ss_pred HHHHHHHHHHHHh-CCCEEEEEe
Confidence 62 3344544 388998883
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=140.86 Aligned_cols=58 Identities=9% Similarity=0.064 Sum_probs=44.7
Q ss_pred ccCCHHHHHHH---------Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEE
Q 024032 181 SWMSEGVHHNQ---------RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKA 237 (273)
Q Consensus 181 ~~LSgGqkq~~---------r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~v 237 (273)
..|||||||+. ++ +.+|++|||||||++||+. +.++.+.++ |.|||++ ..||++++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCGGGGGGCSEEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChHHHHHhCCEEEE
Confidence 45999999953 12 5799999999999999998 234444444 7899888 56899988
Q ss_pred Ee
Q 024032 238 LK 239 (273)
Q Consensus 238 l~ 239 (273)
|+
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 84
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-16 Score=154.40 Aligned_cols=128 Identities=15% Similarity=0.091 Sum_probs=85.3
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccCCHHH
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNR 171 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~ 171 (273)
+..+++|++++|+||||||||||++.++|+...+|. +.+.+.+|++..- +.. . ....+.+.++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~------------~vi~~~~ee~~~~---l~~-~-~~~~g~~~~~ 337 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKE------------RAILFAYEESRAQ---LLR-N-AYSWGMDFEE 337 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC------------CEEEEESSSCHHH---HHH-H-HHTTSCCHHH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCC------------CEEEEEEeCCHHH---HHH-H-HHHcCCCHHH
Confidence 558999999999999999999999999998773354 0122334433210 000 0 0011222222
Q ss_pred HHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH-----H------HHHHHHhcCCcEEE
Q 024032 172 VHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK-----S------SPKYVLRRVDFAMV 227 (273)
Q Consensus 172 ~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~-----~------~l~~l~~~~g~tii 227 (273)
+...+ ..||+||+|+. ++ ..+|++||+| ||++||+. . +++.+++. |.|+|
T Consensus 338 ----~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~-g~tvi 411 (525)
T 1tf7_A 338 ----MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQE-EITGL 411 (525)
T ss_dssp ----HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHT-TCEEE
T ss_pred ----HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhC-CCEEE
Confidence 11221 56999999976 23 6899999999 99999986 1 23445444 99999
Q ss_pred Ec---e---------------eCCEEEEEeCCe
Q 024032 228 VS---N---------------IAEIYKALKAGD 242 (273)
Q Consensus 228 iv---~---------------~ad~i~vl~~G~ 242 (273)
++ . +||+|++|++|+
T Consensus 412 lvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 412 FTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 88 2 369999999886
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-16 Score=141.23 Aligned_cols=107 Identities=14% Similarity=0.142 Sum_probs=72.4
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-ccEEEECCeeCCCC-CccEEEEeccchhhhccCCccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQTSSGNS-SHTITMYMEEHNVMRSLQSGFCVYDS 164 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-~G~I~i~g~~i~~~-~~~i~~v~q~~~~~~~~~~~~tv~en 164 (273)
|+++| +++|++++|+||||||||||+++|+|+++ + +|+|.++|.++... +..++++.|...
T Consensus 17 l~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~-------------- 80 (261)
T 2eyu_A 17 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREV-------------- 80 (261)
T ss_dssp HHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEB--------------
T ss_pred HHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHh--------------
Confidence 99999 89999999999999999999999999998 7 99999998876421 111222222110
Q ss_pred ccCCHHHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHHHH---HHHHHhcCCcEEEEc
Q 024032 165 RGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSS---PKYVLRRVDFAMVVS 229 (273)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~~~---l~~l~~~~g~tiiiv 229 (273)
+... ..|+..- +..+..+|++|+||||| |+... ++. ... |.+|+++
T Consensus 81 -gl~~-----------~~l~~~l--a~aL~~~p~illlDEp~---D~~~~~~~l~~-~~~-g~~vl~t 129 (261)
T 2eyu_A 81 -GEDT-----------KSFADAL--RAALREDPDVIFVGEMR---DLETVETALRA-AET-GHLVFGT 129 (261)
T ss_dssp -TTTB-----------SCHHHHH--HHHHHHCCSEEEESCCC---SHHHHHHHHHH-HHT-TCEEEEE
T ss_pred -CCCH-----------HHHHHHH--HHHHhhCCCEEEeCCCC---CHHHHHHHHHH-Hcc-CCEEEEE
Confidence 0000 0111111 11224699999999999 88843 333 333 8999887
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-17 Score=139.20 Aligned_cols=56 Identities=20% Similarity=0.160 Sum_probs=36.2
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc-----c-CccEEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL-----S-RSGLVLF 130 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~-----~-~~G~I~i 130 (273)
.++++|++|.|. ..+ +++ |++++|..++|+|+||||||||+|.|+|.. . +.|.+.+
T Consensus 3 ~l~~~~~~~~~~---~~~----l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 3 NLNYQQTHFVMS---APD----IRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp --------CEEE---ESS----GGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred chhhhhhhheee---cCC----HhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 478999999995 234 887 999999999999999999999999999987 5 6677654
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=147.32 Aligned_cols=57 Identities=7% Similarity=-0.088 Sum_probs=46.6
Q ss_pred C-CHHHHHHHH---h-cCCC--CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCC
Q 024032 183 M-SEGVHHNQR---C-LRSD--DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAG 241 (273)
Q Consensus 183 L-SgGqkq~~r---~-l~~p--~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G 241 (273)
| ||||+||.. + +.+| ++|||||||+|||+. +.++.+.+ |.|||+| ..||++++|+++
T Consensus 397 l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 397 VASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHhCCEEEEEecc
Confidence 5 999999873 2 6789 999999999999998 34566654 7899998 448999999554
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-16 Score=135.46 Aligned_cols=145 Identities=13% Similarity=0.045 Sum_probs=90.1
Q ss_pred ceeeeee-EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC--CC---ccEEEEeccchhhhccCCcc
Q 024032 87 GIQKGGM-DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN--SS---HTITMYMEEHNVMRSLQSGF 159 (273)
Q Consensus 87 ~L~~is~-~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~--~~---~~i~~v~q~~~~~~~~~~~~ 159 (273)
.|+++.+ .+++|++++|+||||||||||++.|++... ..|.+.+.+.+... .. ..+++.+++... ..+
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 85 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIE-----KKL 85 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBT-----TTE
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhh-----CCE
Confidence 3888888 899999999999999999999999999877 77888775544321 00 111222221110 011
Q ss_pred cccccccCCHHHHHHHHHHhcccCCHHHHHHH--Hh--cCCCC--EEEEcCcCCCC--CHH------HHHHHHHhcCCcE
Q 024032 160 CVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQ--RC--LRSDD--CALMKNDAEID--DLK------SSPKYVLRRVDFA 225 (273)
Q Consensus 160 tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~--r~--l~~p~--iLlLDEPts~L--D~~------~~l~~l~~~~g~t 225 (273)
.+.+..... .. -.......|.++.++. ++ ..+|+ ++++||||+.+ |+. ..++.+.++.|.|
T Consensus 86 ~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~ 160 (235)
T 2w0m_A 86 IIIDALMKE---KE--DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFT 160 (235)
T ss_dssp EEEECCC---------CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEE
T ss_pred EEEeccccc---cC--ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCe
Confidence 222211100 00 0011133477776533 22 35899 99999999887 885 3355565556899
Q ss_pred EEEc---e-------------eCCEEEEEeCC
Q 024032 226 MVVS---N-------------IAEIYKALKAG 241 (273)
Q Consensus 226 iiiv---~-------------~ad~i~vl~~G 241 (273)
||++ . +||++++|+..
T Consensus 161 vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 161 IYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp EEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred EEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9988 2 27899999754
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-15 Score=132.72 Aligned_cols=137 Identities=10% Similarity=0.065 Sum_probs=85.6
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccCCHHHHH
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVH 173 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~ 173 (273)
.+++|++++|+||||||||||++.+++... .|.++ .|..... ...+.|+..+..... +.....-. ...+......
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~-~g~~~~~-~~~v~~~~~e~~~~~-~~~r~~~~-g~~~~~~~~~ 100 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-GGPDL-LEVGELP-TGPVIYLPAEDPPTA-IHHRLHAL-GAHLSAEERQ 100 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCT-TCCCCCC-CCCEEEEESSSCHHH-HHHHHHHH-HTTSCHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCc-CCCccCC-CccEEEEECCCCHHH-HHHHHHHH-HhhcChhhhh
Confidence 478999999999999999999999998543 45553 3544321 234556554433210 00000000 0112333444
Q ss_pred HHHHHhc---------ccCCHHHHHHHHh-cCCCCEEEEcCcCC--CCCHH---------HHHHHHHhcCCcEEEEceeC
Q 024032 174 EGLEELS---------SWMSEGVHHNQRC-LRSDDCALMKNDAE--IDDLK---------SSPKYVLRRVDFAMVVSNIA 232 (273)
Q Consensus 174 ~~l~~~~---------~~LSgGqkq~~r~-l~~p~iLlLDEPts--~LD~~---------~~l~~l~~~~g~tiiiv~~a 232 (273)
+.++.+. ..||+|+.|+.++ +.+|+++|+||||+ ++|+. ..++.+.++.|+|||++.|.
T Consensus 101 ~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~ 180 (279)
T 1nlf_A 101 AVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 180 (279)
T ss_dssp HHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred hccCceEEeecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 4555543 5689999887755 67999999999999 99873 23455554459999999665
Q ss_pred CEE
Q 024032 233 EIY 235 (273)
Q Consensus 233 d~i 235 (273)
.+.
T Consensus 181 ~~~ 183 (279)
T 1nlf_A 181 SKG 183 (279)
T ss_dssp ---
T ss_pred CCc
Confidence 443
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-16 Score=144.61 Aligned_cols=132 Identities=12% Similarity=0.104 Sum_probs=88.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC-----------CccEEEEeccchhhhccCCccccccc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS-----------SHTITMYMEEHNVMRSLQSGFCVYDS 164 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~-----------~~~i~~v~q~~~~~~~~~~~~tv~en 164 (273)
+|++++|+||||||||||+++|+|+++ ++|+|.+.|.++... +..+++++|++..++. .++++|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~----~~v~~~ 176 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSA----ALAYDA 176 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHH----HHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHH----HHHHHH
Confidence 689999999999999999999999999 999999999987431 2458899998765433 355554
Q ss_pred ccCCHHH-HH-HHHHHhc------ccCCHHHHHHH---Hh-cCCCC--EEEEcCcCCCCCHHHHHHHHHhcCCcEEEEce
Q 024032 165 RGFNYNR-VH-EGLEELS------SWMSEGVHHNQ---RC-LRSDD--CALMKNDAEIDDLKSSPKYVLRRVDFAMVVSN 230 (273)
Q Consensus 165 ~~~~~~~-~~-~~l~~~~------~~LSgGqkq~~---r~-l~~p~--iLlLDEPts~LD~~~~l~~l~~~~g~tiiiv~ 230 (273)
....... .. ..++.++ ..++...+|+. |+ ..+|+ ++.|| |+++.+..++++.+.++.|.|+|+++
T Consensus 177 v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~~~~~~~~~~~~t~iivT 255 (304)
T 1rj9_A 177 VQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLEQAKKFHEAVGLTGVIVT 255 (304)
T ss_dssp HHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 2110000 00 0000011 11222334443 34 67898 77888 78888888888888765588999886
Q ss_pred eCC
Q 024032 231 IAE 233 (273)
Q Consensus 231 ~ad 233 (273)
+.|
T Consensus 256 h~d 258 (304)
T 1rj9_A 256 KLD 258 (304)
T ss_dssp CTT
T ss_pred CCc
Confidence 554
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-17 Score=138.25 Aligned_cols=73 Identities=14% Similarity=0.070 Sum_probs=58.5
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
++++||++++|++++|+||||||||||+|+|+|+++++|+|.++|.++........+++|+..+ + .+|+.+|.
T Consensus 23 l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i~~~~~~~~~~~q~~~l----~-~ltv~e~l 95 (158)
T 1htw_A 23 EILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDL----Y-RLADPEEL 95 (158)
T ss_dssp HHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEEEEETTEEEEEEEC----T-TCSCTTHH
T ss_pred HhccccccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEeeeeeccCCCcceecccc----c-cCCcHHHH
Confidence 9999999999999999999999999999999998888899999998774211100157777654 3 56887753
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-16 Score=136.41 Aligned_cols=117 Identities=13% Similarity=0.070 Sum_probs=77.1
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccc--------cc
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS--------RG 166 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en--------~~ 166 (273)
.++|+++||+||||||||||+++|+|++.. .+++++|+...++ ...+++.++ ..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------~i~~v~~d~~~~~--~~~~~~~~~~~~~~~~~~~ 64 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------RVALLPMDHYYKD--LGHLPLEERLRVNYDHPDA 64 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------GEEEEEGGGCBCC--CTTSCHHHHHHSCTTSGGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------CeEEEecCccccC--cccccHHHhcCCCCCChhh
Confidence 578999999999999999999999997642 4677888765431 122344443 12
Q ss_pred CCHHHHHHHHHHhc---------ccCCHHHHHH--H-----Hh-cCCCCEEEEcCcCCC-------CCHH--HH----HH
Q 024032 167 FNYNRVHEGLEELS---------SWMSEGVHHN--Q-----RC-LRSDDCALMKNDAEI-------DDLK--SS----PK 216 (273)
Q Consensus 167 ~~~~~~~~~l~~~~---------~~LSgGqkq~--~-----r~-l~~p~iLlLDEPts~-------LD~~--~~----l~ 216 (273)
.+.+.+.+.++.++ ..+|+|+++. + ++ +.+|+++++||||++ ||+. .. ++
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~ 144 (211)
T 3asz_A 65 FDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLK 144 (211)
T ss_dssp BCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHH
Confidence 34566777777665 5689997531 1 12 568888888999999 7875 22 22
Q ss_pred HHHhcCCcEEEEc
Q 024032 217 YVLRRVDFAMVVS 229 (273)
Q Consensus 217 ~l~~~~g~tiiiv 229 (273)
+..++.|.|++.+
T Consensus 145 r~~~~~g~t~~~~ 157 (211)
T 3asz_A 145 RDVLERGRSLEGV 157 (211)
T ss_dssp HHHHHSCCCHHHH
T ss_pred HHHHHhCCCHHHH
Confidence 2222238887765
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-15 Score=140.80 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=75.8
Q ss_pred EEEEEeecCCeeeeccceeeeee-------EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-ccEEEECCeeCCC-CCc
Q 024032 71 HKFLSYRSGDFWIPIGGIQKGGM-------DIPPVITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQTSSGN-SSH 140 (273)
Q Consensus 71 ~v~~~y~~g~~~v~~~~L~~is~-------~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-~G~I~i~g~~i~~-~~~ 140 (273)
.++++|.....+. |+++.+ .+.+|++++|+||||||||||+++|+|+++ + .|.|...+.++.. ...
T Consensus 93 ~~~iR~~~~~~~~----l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~ 168 (356)
T 3jvv_A 93 GAVFRTIPSKVLT----MEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHES 168 (356)
T ss_dssp EEEEEEECCSCCC----TTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCC
T ss_pred EEEEEECCCCCCC----HHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhc
Confidence 4455554333222 666666 678899999999999999999999999998 5 5777554433321 222
Q ss_pred cEEEEeccchhhhccCCcccccccccCCHHHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHH--HHHHHH
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK--SSPKYV 218 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~--~~l~~l 218 (273)
..+++.|..... + ...... ++ +..+..+|++|++|||+ |+. +.+.++
T Consensus 169 ~~~~v~q~~~~~----------~--~~~~~~---~L-------------a~aL~~~PdvillDEp~---d~e~~~~~~~~ 217 (356)
T 3jvv_A 169 KKCLVNQREVHR----------D--TLGFSE---AL-------------RSALREDPDIILVGEMR---DLETIRLALTA 217 (356)
T ss_dssp SSSEEEEEEBTT----------T--BSCHHH---HH-------------HHHTTSCCSEEEESCCC---SHHHHHHHHHH
T ss_pred cccceeeeeecc----------c--cCCHHH---HH-------------HHHhhhCcCEEecCCCC---CHHHHHHHHHH
Confidence 223344332210 0 001111 11 22336899999999999 666 344455
Q ss_pred HhcCCcEEEEc
Q 024032 219 LRRVDFAMVVS 229 (273)
Q Consensus 219 ~~~~g~tiiiv 229 (273)
... |+||+++
T Consensus 218 ~~~-G~~vl~t 227 (356)
T 3jvv_A 218 AET-GHLVFGT 227 (356)
T ss_dssp HHT-TCEEEEE
T ss_pred Hhc-CCEEEEE
Confidence 544 9999888
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.8e-15 Score=127.09 Aligned_cols=134 Identities=10% Similarity=0.095 Sum_probs=86.7
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc---CccEEEECCeeCCC-CCccEEEEeccchhhhccCCcccc----cc
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSSGN-SSHTITMYMEEHNVMRSLQSGFCV----YD 163 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~---~~G~I~i~g~~i~~-~~~~i~~v~q~~~~~~~~~~~~tv----~e 163 (273)
.-..++|++++|+||||||||||+++|+|+++ ..|.|.+.+.+... .+..++|++|++..|+.+ ++ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~----~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEM----ISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHH----HHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHH----HhcCHHHH
Confidence 44679999999999999999999999999986 47889888876543 345688999988776543 44 44
Q ss_pred cccCCHHHHHHHHHHhcccCCHHHHHHH-HhcCCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEcee-----CCEE
Q 024032 164 SRGFNYNRVHEGLEELSSWMSEGVHHNQ-RCLRSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVSNI-----AEIY 235 (273)
Q Consensus 164 n~~~~~~~~~~~l~~~~~~LSgGqkq~~-r~l~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv~~-----ad~i 235 (273)
|..+. + .+.|-.++.. .++..++++||| ||+. ..+.++..+ +.||+++.+ ..|+
T Consensus 86 ~~~~~-----------~-~~yg~~~~~v~~~l~~G~illLD-----LD~~~~~~i~~~l~~-~~tI~i~th~~~~l~~Rl 147 (219)
T 1s96_A 86 HAEVF-----------G-NYYGTSREAIEQVLATGVDVFLD-----IDWQGAQQIRQKMPH-ARSIFILPPSKIELDRRL 147 (219)
T ss_dssp EEEET-----------T-EEEEEEHHHHHHHHTTTCEEEEE-----CCHHHHHHHHHHCTT-CEEEEEECSSHHHHHHHH
T ss_pred HHHHH-----------h-ccCCCCHHHHHHHHhcCCeEEEE-----ECHHHHHHHHHHccC-CEEEEEECCCHHHHHHHH
Confidence 42211 0 0101011122 346678999999 9999 344444443 889988822 2343
Q ss_pred EEEeCCeEeeecChhhhc
Q 024032 236 KALKAGDSKPLDATKRLF 253 (273)
Q Consensus 236 ~vl~~G~i~~~g~~~~l~ 253 (273)
+..| .++++++.
T Consensus 148 --~~rG----~~~~e~i~ 159 (219)
T 1s96_A 148 --RGRG----QDSEEVIA 159 (219)
T ss_dssp --HTTS----CSCHHHHH
T ss_pred --HHcC----CCCHHHHH
Confidence 6666 46777764
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-16 Score=147.76 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=91.0
Q ss_pred eeeeeeEEcC--CcEEEEEcCCCChHHHHHHHHhhCcc-Cc----cEEEEC----CeeCC----CCCccEEEEeccchhh
Q 024032 88 IQKGGMDIPP--VITILLMGFSGSGKSSLVNLMYSVLS-RS----GLVLFA----QTSSG----NSSHTITMYMEEHNVM 152 (273)
Q Consensus 88 L~~is~~i~~--Ge~~aivGpnGsGKSTLl~ll~gl~~-~~----G~I~i~----g~~i~----~~~~~i~~v~q~~~~~ 152 (273)
.+.|+++|++ |+.++|+||||||||||+++|+|+++ ++ |+|+++ |.++. +. +.+++++|+...
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~- 235 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYID- 235 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHH-
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHH-
Confidence 5679999999 99999999999999999999999999 88 998863 43331 12 335665555442
Q ss_pred hccCCcccccccccC-CHHHHHHHHHHhcccCCHHHHHHH---Hh--cCCCCEEEEcC---cC------CCCCHH-----
Q 024032 153 RSLQSGFCVYDSRGF-NYNRVHEGLEELSSWMSEGVHHNQ---RC--LRSDDCALMKN---DA------EIDDLK----- 212 (273)
Q Consensus 153 ~~~~~~~tv~en~~~-~~~~~~~~l~~~~~~LSgGqkq~~---r~--l~~p~iLlLDE---Pt------s~LD~~----- 212 (273)
+..++.+|..+ ......... ..+|+|++|+. ++ ..+|++++||| |+ .++|+.
T Consensus 236 ----~~~t~~~nl~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l 307 (365)
T 1lw7_A 236 ----YAVRHSHKIAFIDTDFITTQA----FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQF 307 (365)
T ss_dssp ----HHHHHCSSEEEESSCHHHHHH----HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHH
T ss_pred ----HHHhccCCEEEEeCCchHHHH----HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHH
Confidence 33477777432 111111111 12333443322 22 36899999999 65 578877
Q ss_pred -HHHHHHHhcCCcEEEEce-------eCCEEEEEeCCeEeeecChhhh
Q 024032 213 -SSPKYVLRRVDFAMVVSN-------IAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 213 -~~l~~l~~~~g~tiiiv~-------~ad~i~vl~~G~i~~~g~~~~l 252 (273)
..++++.++.+.+++++. +++++.++++ ++..++++++
T Consensus 308 ~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~ 353 (365)
T 1lw7_A 308 QQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISEL 353 (365)
T ss_dssp HHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSC
T ss_pred HHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHh
Confidence 223343444478888872 3445555543 3444555554
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.3e-14 Score=138.21 Aligned_cols=131 Identities=13% Similarity=0.156 Sum_probs=89.2
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----------CCccEEEEeccchhhhcc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----------SSHTITMYMEEHNVMRSL 155 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----------~~~~i~~v~q~~~~~~~~ 155 (273)
-+++||++++|++++|+||||||||||+++|+|+++ .+|+|.+.|.++.. .++.+++++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~--- 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD--- 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC---
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC---
Confidence 468999999999999999999999999999999999 99999998776532 145688999876543
Q ss_pred CCcccccccccCCHH---------------HHHHHHHHhcccCCHHHHHHHHh-----cCCC-CEEEEcCcCCCCCHHHH
Q 024032 156 QSGFCVYDSRGFNYN---------------RVHEGLEELSSWMSEGVHHNQRC-----LRSD-DCALMKNDAEIDDLKSS 214 (273)
Q Consensus 156 ~~~~tv~en~~~~~~---------------~~~~~l~~~~~~LSgGqkq~~r~-----l~~p-~iLlLDEPts~LD~~~~ 214 (273)
+..++++|..+... .-...+. +|+ |+.++ ...| ++||..+|++|.|...+
T Consensus 360 -p~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~----EL~----kiv~iar~l~~~~P~evLLvLDattGq~al~~ 430 (503)
T 2yhs_A 360 -SASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLME----ELK----KIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ 430 (503)
T ss_dssp -HHHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHH----HHH----HHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHH----HHH----HHHHHHHHhccCCCCeeEEEecCcccHHHHHH
Confidence 23355554211000 0000111 111 22222 2346 45655669999988888
Q ss_pred HHHHHhcCCcEEEEce
Q 024032 215 PKYVLRRVDFAMVVSN 230 (273)
Q Consensus 215 l~~l~~~~g~tiiiv~ 230 (273)
++.+.+..+.|.+|++
T Consensus 431 ak~f~~~~~itgvIlT 446 (503)
T 2yhs_A 431 AKLFHEAVGLTGITLT 446 (503)
T ss_dssp HHHHHHHTCCSEEEEE
T ss_pred HHHHHhhcCCCEEEEE
Confidence 8888876688877773
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-14 Score=149.02 Aligned_cols=138 Identities=11% Similarity=-0.009 Sum_probs=87.8
Q ss_pred HHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccC--CH---HHHHHHHHHhc-------
Q 024032 114 LVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGF--NY---NRVHEGLEELS------- 180 (273)
Q Consensus 114 Ll~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~--~~---~~~~~~l~~~~------- 180 (273)
...|..+.+. ..|+|.++|+++.+.... .+.+....+.. ..++..+.... .. .+..+.+..++
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~~~~~--~v~~~l~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~l~ 459 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHEFTEL--SISEELEFLKN--LNLTEREREIVGELLKEIEKRLEFLVDVGLEYLTLS 459 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHHHHHS--BHHHHHHHHHS--CCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCBTT
T ss_pred chhcccccCChHhcCcEECCccHHHhhhC--CHHHHHHHHHh--ccCcHHHHHHHHhhHHHHHHHHHHHHHcCCcccccc
Confidence 3445555666 889999999987532110 00111111111 11232222110 01 12223444444
Q ss_pred ---ccCCHHHHHHHH---h-cCCCC--EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE
Q 024032 181 ---SWMSEGVHHNQR---C-LRSDD--CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL 238 (273)
Q Consensus 181 ---~~LSgGqkq~~r---~-l~~p~--iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl 238 (273)
.+|||||+||++ + +++|+ +|||||||+|||+. +.++++.++ |.|||+| ..||+|++|
T Consensus 460 r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~-G~TvivVtHd~~~~~~aD~ii~l 538 (916)
T 3pih_A 460 RSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL-GNTVIVVEHDEEVIRNADHIIDI 538 (916)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT-TCEEEEECCCHHHHHTCSEEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhCCEEEEE
Confidence 689999999873 3 56666 99999999999999 335556544 9999999 348999999
Q ss_pred ------eCCeEeeecChhhhccCh
Q 024032 239 ------KAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 239 ------~~G~i~~~g~~~~l~~~~ 256 (273)
++|++++.|+++++++.+
T Consensus 539 gpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 539 GPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp ESSSGGGCSEEEEEECHHHHHHSC
T ss_pred cCCcccCCCEEEEeechhhhhcCc
Confidence 899999999999997643
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-14 Score=135.69 Aligned_cols=144 Identities=15% Similarity=0.123 Sum_probs=87.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcE--EEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVIT--ILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSG-----NS 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~--~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~-----~~ 138 (273)
.+++++ +++| ++. . |+++||++++|++ +||+||||||||||+|+|+|+. ++|.++. ..
T Consensus 16 ~l~~~~-~~~y--~~~----~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~-------l~g~~~~~~~~~~~ 80 (427)
T 2qag_B 16 TVPLAG-HVGF--DSL----P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK-------FEGEPATHTQPGVQ 80 (427)
T ss_dssp -CCCCC-CC-C--C------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC-------C-------CCSSCE
T ss_pred eEEEee-EEEE--CCe----e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc-------ccCCcCCCCCccce
Confidence 455666 5666 331 2 8999999999999 9999999999999999999984 2222221 23
Q ss_pred CccEEEEeccchhhhccCCcccccccccCCH----------------HHHHHHHHHh-c--c------------------
Q 024032 139 SHTITMYMEEHNVMRSLQSGFCVYDSRGFNY----------------NRVHEGLEEL-S--S------------------ 181 (273)
Q Consensus 139 ~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~----------------~~~~~~l~~~-~--~------------------ 181 (273)
++.+++++|+..++ ..+||.||.++.. ..+.+.+... + .
T Consensus 81 ~~~i~~v~Q~~~l~----~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~ 156 (427)
T 2qag_B 81 LQSNTYDLQESNVR----LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIA 156 (427)
T ss_dssp EEEEEEEEEC--CE----EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEEC
T ss_pred EeeEEEEeecCccc----cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEe
Confidence 45688999987753 3458888865421 1222233332 1 0
Q ss_pred ----cCCHHHHHHHHhc-CCCCEEEEcCcCCCCCHHHH------HHH-HHhcCCcEEEEc
Q 024032 182 ----WMSEGVHHNQRCL-RSDDCALMKNDAEIDDLKSS------PKY-VLRRVDFAMVVS 229 (273)
Q Consensus 182 ----~LSgGqkq~~r~l-~~p~iLlLDEPts~LD~~~~------l~~-l~~~~g~tiiiv 229 (273)
.|+.....-.+++ .+++++++|+|+..|.+.+. ++. +. ..|.+|+.+
T Consensus 157 d~~~~l~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~-~~gi~I~~i 215 (427)
T 2qag_B 157 PTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV-SNGVQIYQF 215 (427)
T ss_dssp CCC---CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB-TTBCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH-HcCCcEEec
Confidence 2333332222333 57899999999999998732 333 43 348888877
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-14 Score=135.49 Aligned_cols=126 Identities=10% Similarity=0.035 Sum_probs=79.6
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC---CCCccEEEEe-ccchhhhccCCccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG---NSSHTITMYM-EEHNVMRSLQSGFCVY 162 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~---~~~~~i~~v~-q~~~~~~~~~~~~tv~ 162 (273)
++++||.+++|++++|+||||||||||+++|+|+++ ++|.|.++|..-. ..++.+++++ |+...- .++..|++
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~--~~~~~t~~ 242 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEE--ENAPVTAA 242 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC------------CCHH
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccc--cccccCHH
Confidence 399999999999999999999999999999999999 9999999875321 2456677777 543310 00111221
Q ss_pred ccccCCHHHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHHHHHHHHHhcCCcEEEEc-------eeCCEE
Q 024032 163 DSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS-------NIAEIY 235 (273)
Q Consensus 163 en~~~~~~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~~~l~~l~~~~g~tiiiv-------~~ad~i 235 (273)
+ .+. .....+|+.+++||+... ...+.++.+... ..|++.+ ..++|+
T Consensus 243 ~-----------~i~-------------~~l~~~pd~~l~~e~r~~-~~~~~l~~l~~g-~~~~l~t~H~~~~~~~~~Rl 296 (361)
T 2gza_A 243 T-----------LLR-------------SCLRMKPTRILLAELRGG-EAYDFINVAASG-HGGSITSCHAGSCELTFERL 296 (361)
T ss_dssp H-----------HHH-------------HHTTSCCSEEEESCCCST-HHHHHHHHHHTT-CCSCEEEEECSSHHHHHHHH
T ss_pred H-----------HHH-------------HHHhcCCCEEEEcCchHH-HHHHHHHHHhcC-CCeEEEEECCCCHHHHHHHH
Confidence 1 111 111358999999999752 233556666542 2344444 223555
Q ss_pred EEEeCC
Q 024032 236 KALKAG 241 (273)
Q Consensus 236 ~vl~~G 241 (273)
..+..|
T Consensus 297 ~~l~~~ 302 (361)
T 2gza_A 297 ALMVLQ 302 (361)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 555554
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-13 Score=127.67 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=69.7
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-ccEEEECCeeCCC-CCccEEEEeccchhhhccCCcccccccccCCHHH
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQTSSGN-SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNR 171 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-~G~I~i~g~~i~~-~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~ 171 (273)
+++|++++|+||||||||||+++|+|+++ + +|.|.+.+.++.. .+..+++++|...- . +
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g-------~---~-------- 194 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVG-------E---D-------- 194 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBT-------T---T--------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecC-------C---C--------
Confidence 78999999999999999999999999998 6 8999776665532 34456666663210 0 0
Q ss_pred HHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHHHH---HHHHHhcCCcEEEEc
Q 024032 172 VHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSS---PKYVLRRVDFAMVVS 229 (273)
Q Consensus 172 ~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~~~---l~~l~~~~g~tiiiv 229 (273)
...|++.- +..+..+|+++++|||+ |+... ++. . ..|.+++.+
T Consensus 195 --------~~~~~~~l--~~~L~~~pd~illdE~~---d~e~~~~~l~~-~-~~g~~vi~t 240 (372)
T 2ewv_A 195 --------TKSFADAL--RAALREDPDVIFVGEMR---DLETVETALRA-A-ETGHLVFGT 240 (372)
T ss_dssp --------BSCSHHHH--HHHTTSCCSEEEESCCC---SHHHHHHHHHH-H-TTTCEEEEC
T ss_pred --------HHHHHHHH--HHHhhhCcCEEEECCCC---CHHHHHHHHHH-H-hcCCEEEEE
Confidence 01122222 12224699999999999 77633 333 2 338888877
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-13 Score=126.36 Aligned_cols=143 Identities=12% Similarity=0.100 Sum_probs=91.8
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC---------Cc--cEEEEeccchhhhccCCcccc
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS---------SH--TITMYMEEHNVMRSLQSGFCV 161 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~---------~~--~i~~v~q~~~~~~~~~~~~tv 161 (273)
..++|++++|+||||||||||++.|+|+++ .+|+|.+.|.++... ++ .+.+++|.....+ ..++
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p----~~~v 200 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADP----AAVA 200 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCH----HHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCH----HHHH
Confidence 347899999999999999999999999999 999999999987531 22 2447777766533 3366
Q ss_pred cccccCCHHHHHHHHHHhcccCCHHHH-------H---HHHh-cCCCCEEEEcCcCCCCCHHHHHHHHHhcCCcEEEEce
Q 024032 162 YDSRGFNYNRVHEGLEELSSWMSEGVH-------H---NQRC-LRSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSN 230 (273)
Q Consensus 162 ~en~~~~~~~~~~~l~~~~~~LSgGqk-------q---~~r~-l~~p~iLlLDEPts~LD~~~~l~~l~~~~g~tiiiv~ 230 (273)
++|....... ..+.+.-.-+|..+ + ..++ ..++++++||. +++.|..++++.+.++.+.|+++++
T Consensus 201 ~e~l~~~~~~---~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa-~t~~~~~~~~~~~~~~~~it~iilT 276 (328)
T 3e70_C 201 YDAIQHAKAR---GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDA-LAGNAIVEQARQFNEAVKIDGIILT 276 (328)
T ss_dssp HHHHHHHHHH---TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEG-GGTTHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHhc---cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEec-HHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6653211000 00000000011100 0 1133 45778899995 4567888888888876688888883
Q ss_pred eC-----------------CEEEEEeCCeEe
Q 024032 231 IA-----------------EIYKALKAGDSK 244 (273)
Q Consensus 231 ~a-----------------d~i~vl~~G~i~ 244 (273)
.. -.|.++..|+-+
T Consensus 277 KlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 277 KLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp CGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred CcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 32 256777777654
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=111.78 Aligned_cols=132 Identities=11% Similarity=0.034 Sum_probs=81.5
Q ss_pred eeeeee-EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccc
Q 024032 88 IQKGGM-DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSR 165 (273)
Q Consensus 88 L~~is~-~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~ 165 (273)
|+.+.. .+++|++++|+||||||||||++.+++ . ..+.++++...-.. ...+. ...+..
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~~~-----------~~~~~------~~~~~~ 69 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGGFS-----------PERLV------QMAETR 69 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCCCC-----------HHHHH------HHHHTT
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCCCC-----------HHHHH------HHHHhc
Confidence 666665 689999999999999999999999999 5 55555554332000 00000 001111
Q ss_pred cCCHHHHHHHHHHhc-ccCCHHHHHHH-----Hh-cC-CCCEEEEcCcCCCCCHH-----------HH---HHHHHhcCC
Q 024032 166 GFNYNRVHEGLEELS-SWMSEGVHHNQ-----RC-LR-SDDCALMKNDAEIDDLK-----------SS---PKYVLRRVD 223 (273)
Q Consensus 166 ~~~~~~~~~~l~~~~-~~LSgGqkq~~-----r~-l~-~p~iLlLDEPts~LD~~-----------~~---l~~l~~~~g 223 (273)
+.+.+. .++.+. ..++++++|++ ++ +. +|+++++|||++.+|+. +. ++.+.++.|
T Consensus 70 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~ 146 (220)
T 2cvh_A 70 GLNPEE---ALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHN 146 (220)
T ss_dssp TCCHHH---HHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHT
T ss_pred CCChHH---HhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcC
Confidence 222222 233322 45566654322 22 44 49999999999999873 12 455655558
Q ss_pred cEEEEc----e-----------------eCCEEEEEeCC
Q 024032 224 FAMVVS----N-----------------IAEIYKALKAG 241 (273)
Q Consensus 224 ~tiiiv----~-----------------~ad~i~vl~~G 241 (273)
.|+|++ . .||.+++|+..
T Consensus 147 ~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 147 IPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 898888 1 37899998754
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=134.39 Aligned_cols=74 Identities=9% Similarity=0.074 Sum_probs=62.4
Q ss_pred ccCCHHHHHHHHh----cCC--CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE---
Q 024032 181 SWMSEGVHHNQRC----LRS--DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL--- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r~----l~~--p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl--- 238 (273)
.+|||||+||+++ ..+ |++|||||||++|||. +.++++.+ .|.|||+| ..||+|++|
T Consensus 503 ~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl~~i~~ADrIi~Lgpg 581 (972)
T 2r6f_A 503 GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDEDTMLAADYLIDIGPG 581 (972)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCCHHHHHSCSEEEEECSS
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhCCEEEEeCCC
Confidence 6899999998744 455 5999999999999998 34566754 49999999 558999999
Q ss_pred ---eCCeEeeecChhhhccC
Q 024032 239 ---KAGDSKPLDATKRLFSA 255 (273)
Q Consensus 239 ---~~G~i~~~g~~~~l~~~ 255 (273)
++|++++.|++++++..
T Consensus 582 aG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 582 AGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp SGGGCCSEEEEECTTTTTTC
T ss_pred ccCCCCEEEEecCHHHHHhh
Confidence 79999999999998764
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.6e-13 Score=115.69 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=34.2
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhh--Ccc------CccEEEECCee
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYS--VLS------RSGLVLFAQTS 134 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~g--l~~------~~G~I~i~g~~ 134 (273)
-+++|++++|+||||||||||++.|++ +.+ ..|.+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 488999999999999999999999999 443 35677777665
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=106.59 Aligned_cols=62 Identities=11% Similarity=0.114 Sum_probs=48.2
Q ss_pred ccCCHHHHHHH---------Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEE
Q 024032 181 SWMSEGVHHNQ---------RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKA 237 (273)
Q Consensus 181 ~~LSgGqkq~~---------r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~v 237 (273)
.+||||||||. |+ +.+|+++||||||++||+. +.+..+.++ |.|||++ ..||++++
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~~d~ii~ 134 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEELKDAADHVIR 134 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCGGGGGGCSEEEE
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChHHHHHhCCEEEE
Confidence 67999999986 23 4789999999999999999 223444444 7899888 56899999
Q ss_pred E--eCCeE
Q 024032 238 L--KAGDS 243 (273)
Q Consensus 238 l--~~G~i 243 (273)
| ++|..
T Consensus 135 l~~~~g~s 142 (148)
T 1f2t_B 135 ISLENGSS 142 (148)
T ss_dssp EEEETTEE
T ss_pred EEcCCCeE
Confidence 9 45643
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=9.9e-14 Score=126.85 Aligned_cols=123 Identities=16% Similarity=0.221 Sum_probs=78.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCc--------c-CccEEEECCeeCCCCC--------------------ccEEEE---
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVL--------S-RSGLVLFAQTSSGNSS--------------------HTITMY--- 145 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~--------~-~~G~I~i~g~~i~~~~--------------------~~i~~v--- 145 (273)
-++++|+|+||||||||+|.|.|+. . +.|+|.++|.++.... +.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3589999999999999999999986 6 8999999998875321 123333
Q ss_pred eccchhhhccCCcccccccccCCH-HHHHHHH------HH---hc---------------ccCCHHHHHHHHh----cCC
Q 024032 146 MEEHNVMRSLQSGFCVYDSRGFNY-NRVHEGL------EE---LS---------------SWMSEGVHHNQRC----LRS 196 (273)
Q Consensus 146 ~q~~~~~~~~~~~~tv~en~~~~~-~~~~~~l------~~---~~---------------~~LSgGqkq~~r~----l~~ 196 (273)
+|+.. ..+..++.||.++.. ..+...+ .. +. .+||+||+|+..+ +.+
T Consensus 84 ~q~~~----~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k 159 (318)
T 1nij_A 84 LDKGN----IQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTK 159 (318)
T ss_dssp HHHTS----CCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEEC
T ss_pred HhcCC----CCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEEC
Confidence 23332 134668888866531 2211111 11 00 3689999888733 467
Q ss_pred CCEEEEcCcCCCCCHHHHHHHHHhcCCcEEEEcee
Q 024032 197 DDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVSNI 231 (273)
Q Consensus 197 p~iLlLDEPts~LD~~~~l~~l~~~~g~tiiiv~~ 231 (273)
|+++ ||| -...+.++.+. . +.||+++.+
T Consensus 160 ~dl~--de~---~~l~~~l~~l~-~-~~~ii~~sh 187 (318)
T 1nij_A 160 TDVA--GEA---EKLHERLARIN-A-RAPVYTVTH 187 (318)
T ss_dssp TTTC--SCT---HHHHHHHHHHC-S-SSCEEECCS
T ss_pred cccC--CHH---HHHHHHHHHhC-C-CCeEEEecc
Confidence 7766 887 11114455554 2 788888843
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.1e-12 Score=128.98 Aligned_cols=74 Identities=14% Similarity=0.040 Sum_probs=62.6
Q ss_pred ccCCHHHHHHHHh----cCCC--CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE---
Q 024032 181 SWMSEGVHHNQRC----LRSD--DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL--- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r~----l~~p--~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl--- 238 (273)
.+|||||+||+++ ..+| ++|||||||++||+. +.++.+.+. |.|||+| ..||+|++|
T Consensus 378 ~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~-G~TVIvVeHdl~~l~~aD~ii~lgpg 456 (842)
T 2vf7_A 378 PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG-GNSLFVVEHDLDVIRRADWLVDVGPE 456 (842)
T ss_dssp GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT-TCEEEEECCCHHHHTTCSEEEEECSS
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEcCCHHHHHhCCEEEEeCCC
Confidence 6899999998743 5677 599999999999999 345667654 9999999 558999999
Q ss_pred ---eCCeEeeecChhhhccC
Q 024032 239 ---KAGDSKPLDATKRLFSA 255 (273)
Q Consensus 239 ---~~G~i~~~g~~~~l~~~ 255 (273)
++|++++.|+++++...
T Consensus 457 aG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 457 AGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp SGGGCCSEEEEECGGGGGGC
T ss_pred cccCCCEEEEecCHHHHHhc
Confidence 79999999999998764
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-12 Score=107.70 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=30.9
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG 126 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G 126 (273)
+|++++|+.++|+||||+|||||+++|++.+. .+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 46678899999999999999999999999876 555
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.9e-14 Score=121.62 Aligned_cols=130 Identities=16% Similarity=0.161 Sum_probs=72.1
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc--------------CccEEEECCeeCCCCCccEEEEeccchhhhc------c
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS--------------RSGLVLFAQTSSGNSSHTITMYMEEHNVMRS------L 155 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~--------------~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~------~ 155 (273)
++|++++|+||||||||||+++|+|+++ ..|. ++|.+ +.++....+.. +
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~---------~~~~~~~~~~~~i~~~~~ 70 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKD---------YYFVTREMMQRDIAAGDF 70 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTT---------BEECCHHHHHHHHHHTCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCce---------EEEccHHHHHHHHHcCCC
Confidence 5799999999999999999999999874 2333 23332 22222221111 1
Q ss_pred CCccccccc-ccCCHHHHHHHHHHhc---ccC-CHHHHHHH------H-h-cCCCCEEEEcCcCCCCCHH--HH----HH
Q 024032 156 QSGFCVYDS-RGFNYNRVHEGLEELS---SWM-SEGVHHNQ------R-C-LRSDDCALMKNDAEIDDLK--SS----PK 216 (273)
Q Consensus 156 ~~~~tv~en-~~~~~~~~~~~l~~~~---~~L-SgGqkq~~------r-~-l~~p~iLlLDEPts~LD~~--~~----l~ 216 (273)
.+..++.+| .+.+.+.+.++++... ..+ -.|-++.. + + +.+|++++|||+|+++|.. +. +.
T Consensus 71 l~~~~~~~n~~g~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~ 150 (198)
T 1lvg_A 71 IEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLA 150 (198)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHH
T ss_pred EeeeeecCccCCCCHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 233345555 2445667777776422 111 12332211 2 2 5677788889999988875 22 22
Q ss_pred HHHhcCCcEEEEc---eeCCEEEEEeC
Q 024032 217 YVLRRVDFAMVVS---NIAEIYKALKA 240 (273)
Q Consensus 217 ~l~~~~g~tiiiv---~~ad~i~vl~~ 240 (273)
...+ + +.+. ..+|+|+++++
T Consensus 151 ~~~~--~--~~~a~~~~~~D~iivnd~ 173 (198)
T 1lvg_A 151 AART--D--MESSKEPGLFDLVIINDD 173 (198)
T ss_dssp HHHH--H--TTGGGSTTTCSEEEECSS
T ss_pred HHHH--H--HHHhhccCCceEEEECCC
Confidence 2222 1 1222 56899888764
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-12 Score=107.23 Aligned_cols=107 Identities=11% Similarity=0.163 Sum_probs=66.4
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccccc--
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVYDS-- 164 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~en-- 164 (273)
|+++++|++++|+||||||||||+++|+|+++ .+.+.+..+.. .+..+++++|++..++.+ ++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAM----VKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHH----HHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCchhHhcCceEEeccHHHHHHH----HhcCcEE
Confidence 57889999999999999999999999999875 46666655432 344578899988766543 33322
Q ss_pred ---------ccCCHHHHHHHHHHhc---ccCC-HHHHHHHHhcCCCCEEEEcCc
Q 024032 165 ---------RGFNYNRVHEGLEELS---SWMS-EGVHHNQRCLRSDDCALMKND 205 (273)
Q Consensus 165 ---------~~~~~~~~~~~l~~~~---~~LS-gGqkq~~r~l~~p~iLlLDEP 205 (273)
.+...+.+.+.++.-. ..++ .|..+......++.+++++.|
T Consensus 74 ~~~~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~ 127 (205)
T 3tr0_A 74 EHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPP 127 (205)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECS
T ss_pred eeeeeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECc
Confidence 1234456666665532 1122 133333333556777777776
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-14 Score=124.77 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=34.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHh---hCcc-CccEEEECCee
Q 024032 97 PVITILLMGFSGSGKSSLVNLMY---SVLS-RSGLVLFAQTS 134 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~---gl~~-~~G~I~i~g~~ 134 (273)
++++++|+||||||||||+++|+ |+.. +.|+|.++|.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~ 67 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK 67 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence 47899999999999999999999 9988 89999877654
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-12 Score=117.84 Aligned_cols=101 Identities=15% Similarity=-0.015 Sum_probs=68.6
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccc-----------
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS----------- 164 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en----------- 164 (273)
+++.++||+||+|||||||.+.|.+++...|. . ++.+.+|.|+...++ .++++|
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~------~----~~~~~iv~~D~f~~~-----~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYG------G----EKSIGYASIDDFYLT-----HEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHG------G----GSCEEEEEGGGGBCC-----HHHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCC------C----CceEEEeccccccCC-----hHHHHHHhccccccchh
Confidence 35669999999999999999999999873230 1 233444477776432 123222
Q ss_pred -----c-cCCHHHHHHHHHHhc-----------------ccCCHHHHHHH-----HhcCCCCEEEEcCcCCCCCHH
Q 024032 165 -----R-GFNYNRVHEGLEELS-----------------SWMSEGVHHNQ-----RCLRSDDCALMKNDAEIDDLK 212 (273)
Q Consensus 165 -----~-~~~~~~~~~~l~~~~-----------------~~LSgGqkq~~-----r~l~~p~iLlLDEPts~LD~~ 212 (273)
+ ..+.+.+.+.++.+. ..+||||+||. +++ +|+|||+|||++++|+.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCcc
Confidence 1 123455555555542 46899998864 236 99999999999999984
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.8e-12 Score=121.39 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=46.3
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
|+++||+|++ ++++|+||||||||||+++|+|+++ ++|+|.++|+++.
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 9999999999 9999999999999999999999999 9999999998774
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-11 Score=101.08 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=30.4
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCcc
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSG 126 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G 126 (273)
+|+++ +|+.++|+||||+|||||+++|++.+..+|
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g 64 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEAG 64 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTTT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 36666 899999999999999999999999876445
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.5e-13 Score=113.06 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=56.1
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc-C---ccEEEECCeeCCC--------CC-ccEE----EEeccchhhhccCCcccc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTSSGN--------SS-HTIT----MYMEEHNVMRSLQSGFCV 161 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~-~---~G~I~i~g~~i~~--------~~-~~i~----~v~q~~~~~~~~~~~~tv 161 (273)
++++|+|+||||||||+++|+|+++ . .|.|.++|.++.+ ++ +.++ ++.|+...| +
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--------i 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--------I 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE--------E
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE--------E
Confidence 5899999999999999999999998 7 8999999987432 22 2455 566665542 1
Q ss_pred cccccCCHH--HHHHHHHH-hc-------ccCCHHHHHHH---Hh-cCCCCE
Q 024032 162 YDSRGFNYN--RVHEGLEE-LS-------SWMSEGVHHNQ---RC-LRSDDC 199 (273)
Q Consensus 162 ~en~~~~~~--~~~~~l~~-~~-------~~LSgGqkq~~---r~-l~~p~i 199 (273)
.+ ..... .+.+.++. +. ..|||||+||. |+ +.+|++
T Consensus 75 ~~--~~~~~~a~l~~~i~~~l~g~dt~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 75 RR--VSEEEGNDLDWIYERYLSDYDLVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp EE--CCHHHHTCHHHHHHHHTTTCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred ec--CChhhhhCHHHHHHhhCCCCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence 21 00111 33444444 31 55999999875 33 556654
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.2e-13 Score=127.36 Aligned_cols=41 Identities=27% Similarity=0.274 Sum_probs=38.1
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
++|++++|+||||||||||+++|+|+++ ++|.|.+.+.++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE 206 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccch
Confidence 7899999999999999999999999998 8999999887763
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.6e-11 Score=114.93 Aligned_cols=126 Identities=16% Similarity=0.155 Sum_probs=79.6
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc-
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG- 166 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~- 166 (273)
-++++|+++.|+.++|||+||||||||+++|+|..+ .+.+.+...+...++++.++.. ..++++|+++
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-----~i~~~~ftTl~p~~G~V~~~~~------~~~~l~DtpGl 215 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-----KIAPYPFTTLSPNLGVVEVSEE------ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC-----EECCCTTCSSCCEEEEEECSSS------CEEEEEECCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc-----cccCcccceecceeeEEEecCc------ceEEEEecccc
Confidence 578999999999999999999999999999999743 3344444444455666655431 0113333322
Q ss_pred ---------CCHHHHHHHHHHh-------------cccCCHHHHHHHHh----cCCCCEEEEcCcCCCCCHH-----HHH
Q 024032 167 ---------FNYNRVHEGLEEL-------------SSWMSEGVHHNQRC----LRSDDCALMKNDAEIDDLK-----SSP 215 (273)
Q Consensus 167 ---------~~~~~~~~~l~~~-------------~~~LSgGqkq~~r~----l~~p~iLlLDEPts~LD~~-----~~l 215 (273)
+..... +.++.+ ..+||+|++|+... +..|.+|+| +.+|+. ..+
T Consensus 216 i~~a~~~~~L~~~fl-~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l 290 (416)
T 1udx_A 216 IEGASEGKGLGLEFL-RHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKAL 290 (416)
T ss_dssp CCCGGGSCCSCHHHH-HHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHH
T ss_pred ccchhhhhhhhHHHH-HHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHH
Confidence 211111 111111 14589999887632 579999999 889886 223
Q ss_pred HHHHhcCCcEEEEc
Q 024032 216 KYVLRRVDFAMVVS 229 (273)
Q Consensus 216 ~~l~~~~g~tiiiv 229 (273)
....++.+.+++++
T Consensus 291 ~~~l~~~g~~vi~i 304 (416)
T 1udx_A 291 ADALAREGLAVLPV 304 (416)
T ss_dssp HHHHHTTTSCEEEC
T ss_pred HHHHHhcCCeEEEE
Confidence 33333447788777
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-11 Score=112.46 Aligned_cols=87 Identities=20% Similarity=0.109 Sum_probs=56.2
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEE---CCeeCCCC-----CccEEEEeccchhh-----------
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF---AQTSSGNS-----SHTITMYMEEHNVM----------- 152 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i---~g~~i~~~-----~~~i~~v~q~~~~~----------- 152 (273)
|++.+|++++|+||||||||||+|+|+|+.+ ++|+|.+ +|+++... .+.+++++|.+...
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 5677899999999999999999999999999 9999999 88887532 13578999987531
Q ss_pred -hccCCcccccccccC--------CHHHHHHHHHHhc
Q 024032 153 -RSLQSGFCVYDSRGF--------NYNRVHEGLEELS 180 (273)
Q Consensus 153 -~~~~~~~tv~en~~~--------~~~~~~~~l~~~~ 180 (273)
..++..+|+ +|..+ ...++.++++.++
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~ 279 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGE 279 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTS
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCC
Confidence 123455677 76432 2345677777765
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4e-11 Score=113.13 Aligned_cols=117 Identities=11% Similarity=0.090 Sum_probs=68.1
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHH--HhhCcc-Ccc-----EEEECCeeCCC------CCccEEEEeccchhhhccCCcc
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNL--MYSVLS-RSG-----LVLFAQTSSGN------SSHTITMYMEEHNVMRSLQSGF 159 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~l--l~gl~~-~~G-----~I~i~g~~i~~------~~~~i~~v~q~~~~~~~~~~~~ 159 (273)
-|++|++++|+||||||||||++. +.++.+ +.| .+++++..... ..+++++.++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~------------ 241 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD------------ 241 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH------------
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH------------
Confidence 589999999999999999999994 456665 544 77887765311 1111221111
Q ss_pred cccccc----cCCHHHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHH------------------HHHHH
Q 024032 160 CVYDSR----GFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK------------------SSPKY 217 (273)
Q Consensus 160 tv~en~----~~~~~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~------------------~~l~~ 217 (273)
++.+|. ....+...+.++.+. +...-.+|+++++|||++.+|+. ..++.
T Consensus 242 ~vleni~~~~~~~~~~~~~~l~~~~---------~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~ 312 (400)
T 3lda_A 242 DALNNVAYARAYNADHQLRLLDAAA---------QMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQR 312 (400)
T ss_dssp HHHHTEEEEECCSHHHHHHHHHHHH---------HHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHH
T ss_pred hHhhcEEEeccCChHHHHHHHHHHH---------HHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHH
Confidence 122221 111111111111110 00013589999999999999852 22456
Q ss_pred HHhcCCcEEEEcee
Q 024032 218 VLRRVDFAMVVSNI 231 (273)
Q Consensus 218 l~~~~g~tiiiv~~ 231 (273)
++++.|.|||++.|
T Consensus 313 lake~gitVIlv~H 326 (400)
T 3lda_A 313 LADQFGVAVVVTNQ 326 (400)
T ss_dssp HHHHHCCEEEEEEE
T ss_pred HHHHcCCEEEEEEe
Confidence 66666999999933
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-11 Score=113.41 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=63.0
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEEC-CeeCC-CCCccEEEEeccchhhhccCCcccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFA-QTSSG-NSSHTITMYMEEHNVMRSLQSGFCVYD 163 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~-g~~i~-~~~~~i~~v~q~~~~~~~~~~~~tv~e 163 (273)
++++++. .+|++++|+||||||||||+|+|+|+.. .+|.|.+. |.... .....+++++|+..++ ...++++
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~----dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVI----DSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEE----ECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEec----CcccHHH
Confidence 6777775 4899999999999999999999999875 78999987 65542 3445678888876543 3346766
Q ss_pred cc--cCCHHHHH----HHHHHhc---------ccCCHHHHHHHHh
Q 024032 164 SR--GFNYNRVH----EGLEELS---------SWMSEGVHHNQRC 193 (273)
Q Consensus 164 n~--~~~~~~~~----~~l~~~~---------~~LSgGqkq~~r~ 193 (273)
+. ..+.+++. +.++.++ ..|| ||+|+..+
T Consensus 281 ~~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~al 324 (358)
T 2rcn_A 281 FGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAV 324 (358)
T ss_dssp CCCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHH
Confidence 52 23333333 3334333 5799 99887754
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.5e-13 Score=113.83 Aligned_cols=140 Identities=9% Similarity=-0.105 Sum_probs=71.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc-----------
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG----------- 166 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~----------- 166 (273)
|++++|+||||||||||+++|++ +.+|.+.++|.++.... ..++++|..... ...+++++..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~--~~~g~~~i~~d~~~~~~-~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 74 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA--QLDNSAYIEGDIINHMV-VGGYRPPWESDE----LLALTWKNITDLTVNFLLAQN 74 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--HSSSEEEEEHHHHHTTC-CTTCCCGGGCHH----HHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhc--ccCCeEEEcccchhhhh-ccccccCccchh----HHHHHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999986 46788999887654322 223444433211 1113333210
Q ss_pred -------CCHHHHHHHHHHhcccCCHHHHHHH----------HhcCCCCEEEEcCcCCCCCHHHH--HHHHH--hcCCcE
Q 024032 167 -------FNYNRVHEGLEELSSWMSEGVHHNQ----------RCLRSDDCALMKNDAEIDDLKSS--PKYVL--RRVDFA 225 (273)
Q Consensus 167 -------~~~~~~~~~l~~~~~~LSgGqkq~~----------r~l~~p~iLlLDEPts~LD~~~~--l~~l~--~~~g~t 225 (273)
..........+.+ . |+|++|+. .++.+|+...+|+ ++|+... ...+. .+.+.+
T Consensus 75 ~~ild~~~~~~~~~~~~~~~-~--s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~~~~~~~~~~~~~~ 148 (189)
T 2bdt_A 75 DVVLDYIAFPDEAEALAQTV-Q--AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLELVEEFESKGIDERY 148 (189)
T ss_dssp EEEEESCCCHHHHHHHHHHH-H--HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHHHHHHHHTTCCTTS
T ss_pred cEEEeeccCHHHHHHHHHHH-H--hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHHHHHHhhcCCCccE
Confidence 0111111111110 0 66665432 1134455556673 7888621 22222 223678
Q ss_pred EEEce---------eCCEEEEEeCCeEeeecChhhh
Q 024032 226 MVVSN---------IAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 226 iiiv~---------~ad~i~vl~~G~i~~~g~~~~l 252 (273)
+|.+. .||+|+ ++|+++..|+++-+
T Consensus 149 ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 149 FYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp EEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred EEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 88762 256777 99999999987654
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.9e-12 Score=117.31 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=65.9
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
.++++++++.|. ...+ |+++||++++|++++|+||||||||||+++|+|++. ++|+|.+.|.++..
T Consensus 29 ~ie~~~~~~~~~--~~~~----l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~ 102 (337)
T 2qm8_A 29 LAESRRADHRAA--VRDL----IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSI 102 (337)
T ss_dssp HHTCSSHHHHHH--HHHH----HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCS
T ss_pred HHeeCCcccccC--hHHH----HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccch
Confidence 355666766663 3345 999999999999999999999999999999999999 99999999987632
Q ss_pred --CCccEEEEeccchhh
Q 024032 138 --SSHTITMYMEEHNVM 152 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~ 152 (273)
.+.++++++|++..+
T Consensus 103 ~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 103 LGDKTRMARLAIDRNAF 119 (337)
T ss_dssp SCCGGGSTTGGGCTTEE
T ss_pred HHHhhhheeeccCcccc
Confidence 345677888877654
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-13 Score=122.09 Aligned_cols=112 Identities=14% Similarity=0.098 Sum_probs=75.2
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVY 162 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~ 162 (273)
+++++|++++| ++|+||||||||||+++|+|.+.. |.|.++|.++.. ..+.+++++|+... .....++.
T Consensus 36 l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~---~~p~i~~~ 109 (274)
T 2x8a_A 36 FKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-NFISVKGPELLNMYVGESERAVRQVFQRAKN---SAPCVIFF 109 (274)
T ss_dssp HHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-EEEEEETTTTCSSTTHHHHHHHHHHHHHHHH---TCSEEEEE
T ss_pred HHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHh---cCCCeEee
Confidence 89999999999 999999999999999999997653 689999887643 12345666665421 12233555
Q ss_pred ccccC--C---H---HHHHHHHHHhcccCCHHHHHHHH---h-cCCCCEEEEcCcCC
Q 024032 163 DSRGF--N---Y---NRVHEGLEELSSWMSEGVHHNQR---C-LRSDDCALMKNDAE 207 (273)
Q Consensus 163 en~~~--~---~---~~~~~~l~~~~~~LSgGqkq~~r---~-l~~p~iLlLDEPts 207 (273)
|+... . . ......+..+..+|||||+|+.. + ..+|++| |||+.
T Consensus 110 Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 110 DEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp ETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred ehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 55321 0 0 11122344555789999987652 2 5678864 88864
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-10 Score=105.43 Aligned_cols=115 Identities=10% Similarity=0.118 Sum_probs=59.4
Q ss_pred EEEEcCCCChHHHHHHHHhh-Ccc-CccEEEECCeeCCC---CCccEEEEeccchhhhccCCcccccccccCCHHHHHHH
Q 024032 101 ILLMGFSGSGKSSLVNLMYS-VLS-RSGLVLFAQTSSGN---SSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEG 175 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~g-l~~-~~G~I~i~g~~i~~---~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~ 175 (273)
+.|.||||+|||||+++|++ ++. ..|.+.++|.+... .+..++++++...+. . ...+........+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~ 112 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLE----I--TPSDMGNNDRIVIQEL 112 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEE----E--CCC----CCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEE----e--cHhhcCCcchHHHHHH
Confidence 79999999999999999999 677 89999999876542 233455555544321 0 1111111122234555
Q ss_pred HHHhccc--------CCHHHHHHHHhcCCCCEEEEcCcCCCCCHH--HHHHH-HHh-cCCcEEEEc
Q 024032 176 LEELSSW--------MSEGVHHNQRCLRSDDCALMKNDAEIDDLK--SSPKY-VLR-RVDFAMVVS 229 (273)
Q Consensus 176 l~~~~~~--------LSgGqkq~~r~l~~p~iLlLDEPts~LD~~--~~l~~-l~~-~~g~tiiiv 229 (273)
++.+... ||| ...+|+++|+|||++ ||+. +.+.+ +.+ ..+.++|++
T Consensus 113 i~~~~~~~~~~~~~~ls~-------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~ 170 (354)
T 1sxj_E 113 LKEVAQMEQVDFQDSKDG-------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMV 170 (354)
T ss_dssp HHHHTTTTC-------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred HHHHHHhccccccccccc-------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEE
Confidence 5554421 133 256899999999999 9998 33333 322 125666666
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.2e-11 Score=100.12 Aligned_cols=40 Identities=33% Similarity=0.380 Sum_probs=33.4
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhhCcc-C---ccEEEECCee
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTS 134 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~---~G~I~i~g~~ 134 (273)
.++|++++|+||||||||||+++|+|+++ . .|.|.++|..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 47899999999999999999999999987 4 4556555544
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.5e-12 Score=121.03 Aligned_cols=140 Identities=10% Similarity=0.073 Sum_probs=85.4
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhh------------Ccc-CccEEEECCeeCC------CCCccE---EEEeccchh
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYS------------VLS-RSGLVLFAQTSSG------NSSHTI---TMYMEEHNV 151 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~g------------l~~-~~G~I~i~g~~i~------~~~~~i---~~v~q~~~~ 151 (273)
++++|..++|||+||||||||+|+|+| .+. +.|.+.+.|..+. ..++.+ ..+++.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 445 7899999875432 112222 234444443
Q ss_pred hhccCCcccccccccCCHHHHHHHHHHhc--------------ccCCHHHHHHHHhcCCC--CEEEEcCcCCCCCHHHH-
Q 024032 152 MRSLQSGFCVYDSRGFNYNRVHEGLEELS--------------SWMSEGVHHNQRCLRSD--DCALMKNDAEIDDLKSS- 214 (273)
Q Consensus 152 ~~~~~~~~tv~en~~~~~~~~~~~l~~~~--------------~~LSgGqkq~~r~l~~p--~iLlLDEPts~LD~~~~- 214 (273)
....+..++.+ . .....+..+. ..++++ .+| +++++|||+.++|+...
T Consensus 96 ----~~~~s~~e~L~--~-~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~--------~dP~~di~ildeel~~~D~~~~~ 160 (392)
T 1ni3_A 96 ----TKGASTGVGLG--N-AFLSHVRAVDAIYQVVRAFDDAEIIHVEGD--------VDPIRDLSIIVDELLIKDAEFVE 160 (392)
T ss_dssp ----CCCCCSSSSSC--H-HHHHHHTTCSEEEEEEECCCTTCSSCCSSS--------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----ccCCcHHHHHH--H-HHHHHHHHHHHHHHHHhccccceeeeeccc--------cCcchhhhhchhhhHHHHHHHHH
Confidence 22233333221 1 1111122111 112222 288 99999999999999833
Q ss_pred -----HHHHHhcCCcEEEEc-------eeCCEEE-EEeCC-eEeeecCh
Q 024032 215 -----PKYVLRRVDFAMVVS-------NIAEIYK-ALKAG-DSKPLDAT 249 (273)
Q Consensus 215 -----l~~l~~~~g~tiiiv-------~~ad~i~-vl~~G-~i~~~g~~ 249 (273)
+..+..+.|.|++ . .+|+++. +|++| +++..++.
T Consensus 161 k~~~~l~~~~~~~g~ti~-sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 161 KHLEGLRKITSRGANTLE-MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHTTCCSSCSSS-HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHHHHHhcCCccc-cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 2233022256643 4 5678888 89999 88876654
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=98.99 E-value=7.8e-10 Score=92.80 Aligned_cols=61 Identities=16% Similarity=0.062 Sum_probs=43.9
Q ss_pred ccCCHHHHHHHH---h-----cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE-
Q 024032 181 SWMSEGVHHNQR---C-----LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL- 238 (273)
Q Consensus 181 ~~LSgGqkq~~r---~-----l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl- 238 (273)
..|||||||+.. + +++|+++||||||++||+. +.++++.+ +.++|++ ..||+++.+
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHHHHHhCCEEEEEE
Confidence 569999999862 2 2567999999999999998 33445543 4455555 678999754
Q ss_pred -eCCeE
Q 024032 239 -KAGDS 243 (273)
Q Consensus 239 -~~G~i 243 (273)
.+|..
T Consensus 141 ~~~g~s 146 (173)
T 3kta_B 141 MRDGVS 146 (173)
T ss_dssp EETTEE
T ss_pred ecCCEE
Confidence 56654
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=8.1e-12 Score=113.55 Aligned_cols=64 Identities=17% Similarity=0.048 Sum_probs=55.7
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEE-------------------cCCcEEEEEcCCCChHHHHHHHHhhCcc-
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDI-------------------PPVITILLMGFSGSGKSSLVNLMYSVLS- 123 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i-------------------~~Ge~~aivGpnGsGKSTLl~ll~gl~~- 123 (273)
...+++++|++.|. ++ +++++|.+ ++|+++||+||||||||||+++|+|++.
T Consensus 35 ~~~i~~~~v~~~y~----~~----~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~ 106 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL----PL----SRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR 106 (308)
T ss_dssp CTTCCHHHHHHTHH----HH----HHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred ccccchHhHHHHHH----HH----HHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34688999999883 34 99999988 9999999999999999999999999864
Q ss_pred --CccEEEE---CCeeC
Q 024032 124 --RSGLVLF---AQTSS 135 (273)
Q Consensus 124 --~~G~I~i---~g~~i 135 (273)
++|+|.+ +|...
T Consensus 107 ~~~~G~i~vi~~d~~~~ 123 (308)
T 1sq5_A 107 WPEHRRVELITTDGFLH 123 (308)
T ss_dssp STTCCCEEEEEGGGGBC
T ss_pred CCCCCeEEEEecCCccC
Confidence 6899999 87664
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-10 Score=100.69 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=22.9
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHh-hCcc
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMY-SVLS 123 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~-gl~~ 123 (273)
..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 389999999999999999999999999999999 9874
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.97 E-value=9e-10 Score=100.35 Aligned_cols=90 Identities=14% Similarity=0.216 Sum_probs=62.8
Q ss_pred eeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccCC
Q 024032 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFN 168 (273)
Q Consensus 90 ~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~ 168 (273)
.++|+.++|++++|+|||||||||+++.|++++. ..|+|.+.+.+.... ..
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~-----------~a----------------- 147 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA-----------AA----------------- 147 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH-----------HH-----------------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH-----------HH-----------------
Confidence 3566678999999999999999999999999998 888998877664210 00
Q ss_pred HHHHHHHHHHhc----ccCCHHHHHHH------Hh-cCCCCEEEEcCcCC
Q 024032 169 YNRVHEGLEELS----SWMSEGVHHNQ------RC-LRSDDCALMKNDAE 207 (273)
Q Consensus 169 ~~~~~~~l~~~~----~~LSgGqkq~~------r~-l~~p~iLlLDEPts 207 (273)
.+.+...++.++ ..+|+|+.++. ++ ..+|+++|+|||..
T Consensus 148 ~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 148 IEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 011222233333 34567776543 22 57999999999975
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-10 Score=104.21 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=43.4
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEE---CCeeCCCC----C-ccEEEEeccchh
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF---AQTSSGNS----S-HTITMYMEEHNV 151 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i---~g~~i~~~----~-~~i~~v~q~~~~ 151 (273)
|++.+|++++|+||||||||||+|+|+ +++ .+|+|.+ +|++++.. + +.+++++|.+..
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~ 226 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGF 226 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCC
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCc
Confidence 456789999999999999999999999 888 9999999 89877532 1 357999998753
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-10 Score=106.71 Aligned_cols=59 Identities=22% Similarity=0.211 Sum_probs=36.5
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEE---CCeeCCCCC---c-cEEEEeccchh
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF---AQTSSGNSS---H-TITMYMEEHNV 151 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i---~g~~i~~~~---~-~i~~v~q~~~~ 151 (273)
+++.+|++++|+||||||||||+|+|+|+.. .+|+|.+ .|+.++... + .+++++|.+.+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~ 234 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGF 234 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCc
Confidence 7788999999999999999999999999998 9999998 787765321 1 26888988764
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.96 E-value=3.3e-11 Score=105.49 Aligned_cols=56 Identities=21% Similarity=0.301 Sum_probs=39.9
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------------CCccEEEEecc
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-------------SSHTITMYMEE 148 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-------------~~~~i~~v~q~ 148 (273)
+|++.+ ++++|+||||||||||+++|+|++. ++|.|.++|.++.. .+..+++++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 8999999999999999999999998 99999999987621 24567888874
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.93 E-value=8.4e-10 Score=95.09 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=34.6
Q ss_pred eeee-eeEEcCCcEEEEEcCCCChHHHHHH-HHhhCcc-CccEEEECCe
Q 024032 88 IQKG-GMDIPPVITILLMGFSGSGKSSLVN-LMYSVLS-RSGLVLFAQT 133 (273)
Q Consensus 88 L~~i-s~~i~~Ge~~aivGpnGsGKSTLl~-ll~gl~~-~~G~I~i~g~ 133 (273)
|+.+ .--+++|++++|+||||||||||+. ++.+..+ ..+.+++...
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 6666 5678999999999999999999955 5455555 4555666554
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.90 E-value=7.3e-10 Score=92.32 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=36.7
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeC
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSS 135 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i 135 (273)
.+++|++++|+||||||||||+++|+|. ...|.|.++|.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-PGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-SSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-cCCCeEEEcccch
Confidence 4789999999999999999999999997 5789999998765
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.88 E-value=5.8e-12 Score=112.19 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=71.3
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVY 162 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~ 162 (273)
+++++|++++| ++|+||||+|||||+++|++... .|.|.+++.++.. ..+.+..++|+... .....++.
T Consensus 65 l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~i~~i 138 (278)
T 1iy2_A 65 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFETAKR---HAPCIVFI 138 (278)
T ss_dssp HHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHT---SCSEEEEE
T ss_pred HHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHh---cCCcEEeh
Confidence 89999999999 89999999999999999999765 7889888766431 12234445554331 12233555
Q ss_pred ccccC-----------CHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCc
Q 024032 163 DSRGF-----------NYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKND 205 (273)
Q Consensus 163 en~~~-----------~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEP 205 (273)
|+... ..+...+.+..+...|||||+|+. ++ ..+|++ ||++
T Consensus 139 Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 139 DEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp ETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred hhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh--CCHh
Confidence 54210 112334555666678999997754 22 455654 5554
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=8.6e-09 Score=93.20 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=41.8
Q ss_pred eeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 89 ~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
++++|+ +|++++|+|+||+||||++..|++++. ..|+|.+.+.++.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence 677888 999999999999999999999999999 8999999887754
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-11 Score=108.67 Aligned_cols=112 Identities=14% Similarity=0.120 Sum_probs=71.0
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCC-----CCccEEEEeccchhhhccCCccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGN-----SSHTITMYMEEHNVMRSLQSGFCVY 162 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~-----~~~~i~~v~q~~~~~~~~~~~~tv~ 162 (273)
++++++++++| ++|+||||+|||||+++|++... .|.+.+++.++.. .++.+..++|+... .....++.
T Consensus 41 ~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~i~~~ 114 (254)
T 1ixz_A 41 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFETAKR---HAPCIVFI 114 (254)
T ss_dssp HHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTT---SSSEEEEE
T ss_pred HHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHh---cCCeEEEe
Confidence 89999999999 99999999999999999999765 7888888765421 12233344544321 12233455
Q ss_pred cccc-----------CCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCC
Q 024032 163 DSRG-----------FNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAE 207 (273)
Q Consensus 163 en~~-----------~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts 207 (273)
|+.. ...+...+.+..+...|||||+|+. ++ ..+|++ ||++..
T Consensus 115 Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 115 DEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDPALL 172 (254)
T ss_dssp ETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG--SCGGGG
T ss_pred hhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh--CCHHHc
Confidence 5421 0112334455566677899997754 22 355655 566543
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.3e-10 Score=100.38 Aligned_cols=52 Identities=23% Similarity=0.367 Sum_probs=34.5
Q ss_pred CceEEEEE-EEEeecCCeeeeccceeeeeeEEcC---CcEEEEEcCCCChHHHHHHHHhhC
Q 024032 65 GLNELRHK-FLSYRSGDFWIPIGGIQKGGMDIPP---VITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 65 ~~i~~~~v-~~~y~~g~~~v~~~~L~~is~~i~~---Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
..++++|+ +++|. ++.++ |+++||+|++ |++++|+|++||||||+.++|++.
T Consensus 16 ~~l~~~~~~~~~~~-~~~~~----l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 16 ALLETGSLLHSPFD-EEQQI----LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp -----------------CHH----HHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEcceeeEEec-Ccchh----hhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999 99982 33455 9999999999 999999999999999999999884
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.79 E-value=8.1e-10 Score=107.28 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=44.9
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
++++++|.+++|++++|+||||||||||+++|+|+++ ++|.|.+.|.+
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 4778899999999999999999999999999999999 99999998865
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.6e-09 Score=107.02 Aligned_cols=66 Identities=20% Similarity=0.181 Sum_probs=55.7
Q ss_pred CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Cc-cEEEECCeeCCCCCccEEEEecc
Q 024032 79 GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS-GLVLFAQTSSGNSSHTITMYMEE 148 (273)
Q Consensus 79 g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~-G~I~i~g~~i~~~~~~i~~v~q~ 148 (273)
|...+ ++.+++.+.+|+.+.|+||||+|||||+++|+++++ .. |.+.+.+.+.......+.++++.
T Consensus 45 G~~~~----l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g 112 (604)
T 3k1j_A 45 GQEHA----VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPAC 112 (604)
T ss_dssp SCHHH----HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETT
T ss_pred Cchhh----HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecc
Confidence 44455 899999999999999999999999999999999998 55 88888888776666667776654
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=7.2e-10 Score=93.83 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=43.6
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEE--EECCeeCC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLV--LFAQTSSG 136 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I--~i~g~~i~ 136 (273)
.+..++..++|++++|+||||||||||+++|++.+...|.+ +++|.++.
T Consensus 15 ~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 15 VDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR 65 (200)
T ss_dssp HHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh
Confidence 77888889999999999999999999999999988766887 88887664
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=1e-08 Score=85.78 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=31.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc------------CccEEEECCeeC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS------------RSGLVLFAQTSS 135 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~------------~~G~I~i~g~~i 135 (273)
.++|+|+||||||||++.++|... .+|.|.++|+++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 689999999999999999999753 268899998754
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.5e-09 Score=94.16 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=51.8
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHh---hCcc-CccEEE--------ECCeeCCC------CCccEEEEeccchhh-hccC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMY---SVLS-RSGLVL--------FAQTSSGN------SSHTITMYMEEHNVM-RSLQ 156 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~---gl~~-~~G~I~--------i~g~~i~~------~~~~i~~v~q~~~~~-~~~~ 156 (273)
++|++++|+|||||||||++++|+ |+.. ++|.++ .+|.++.. +++.+++++|..... ...+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 9988 999998 88887742 345678888754321 1113
Q ss_pred Cccccccc
Q 024032 157 SGFCVYDS 164 (273)
Q Consensus 157 ~~~tv~en 164 (273)
+..++.++
T Consensus 105 ~~~~v~~~ 112 (252)
T 4e22_A 105 EGEDVSNE 112 (252)
T ss_dssp TTEECTTG
T ss_pred CCeehhHH
Confidence 34455555
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-08 Score=83.91 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=44.3
Q ss_pred eeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCe--e-CC--------CCCccEEEEeccch
Q 024032 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT--S-SG--------NSSHTITMYMEEHN 150 (273)
Q Consensus 89 ~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~--~-i~--------~~~~~i~~v~q~~~ 150 (273)
++++|++.+| +++|+||||||||||+++|.+++. ..|.....+. + +. .....+.+++|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 7889999999 999999999999999999999876 5554322221 1 10 12346778888753
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.7e-08 Score=91.45 Aligned_cols=58 Identities=12% Similarity=0.210 Sum_probs=42.3
Q ss_pred cCCHHHHHHH---------Hh-cCC-CCEEEEcCcCCCCCHHH--HH-HHHHh-cCCcEEEEc-------eeCCEEEEEe
Q 024032 182 WMSEGVHHNQ---------RC-LRS-DDCALMKNDAEIDDLKS--SP-KYVLR-RVDFAMVVS-------NIAEIYKALK 239 (273)
Q Consensus 182 ~LSgGqkq~~---------r~-l~~-p~iLlLDEPts~LD~~~--~l-~~l~~-~~g~tiiiv-------~~ad~i~vl~ 239 (273)
.|||||+|+. ++ ..+ |++|||||||++||+.. .+ ..+.+ ..+.+||++ ..||++++|+
T Consensus 280 ~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l~ 359 (371)
T 3auy_A 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVK 359 (371)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEEE
Confidence 6999999975 12 467 99999999999999992 22 22322 114577777 4579999996
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-08 Score=86.03 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=40.2
Q ss_pred eeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCC----CccEEEEeccchh
Q 024032 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNS----SHTITMYMEEHNV 151 (273)
Q Consensus 90 ~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~----~~~i~~v~q~~~~ 151 (273)
+-.++.++|++++|+||||||||||+++|++.+ |.+.+++.++... +...++++|+...
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~ 83 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHSPENIATMQRGIPLTDEDR 83 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSCHHHHHHHHTTCCCCHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCeEEcccccccHHHHHHHhcCCCCCCccc
Confidence 334667899999999999999999999999976 8899988776421 1133556665443
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.4e-08 Score=85.82 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=24.6
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+++++||++++|++++|+||+||||||+.+.|++.+
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 399999999999999999999999999999999754
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.1e-08 Score=84.13 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=39.0
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc-EEEECCeeC-CCCCccEEEEeccchhhh
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVLFAQTSS-GNSSHTITMYMEEHNVMR 153 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G-~I~i~g~~i-~~~~~~i~~v~q~~~~~~ 153 (273)
+++++|++++|+||||||||||+++|++++. +.| .+....... ......++++++++..+.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFE 64 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHH
Confidence 4688999999999999999999999999985 555 221111110 011223567888765543
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-07 Score=85.47 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=33.1
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc-EEEECCee
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVLFAQTS 134 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G-~I~i~g~~ 134 (273)
.+|++++|+|||||||||+++.|++.+. .+| .|.+-+.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 5799999999999999999999999998 788 56554443
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.59 E-value=6.8e-08 Score=91.25 Aligned_cols=57 Identities=9% Similarity=0.104 Sum_probs=42.5
Q ss_pred cCCHHHHHHHHh----c----CCCCEEEEcCcCCCCCHHH------HHHHHHhcCCcEEEEc-------eeCCEEEEEe
Q 024032 182 WMSEGVHHNQRC----L----RSDDCALMKNDAEIDDLKS------SPKYVLRRVDFAMVVS-------NIAEIYKALK 239 (273)
Q Consensus 182 ~LSgGqkq~~r~----l----~~p~iLlLDEPts~LD~~~------~l~~l~~~~g~tiiiv-------~~ad~i~vl~ 239 (273)
.|||||||+..+ + .+|+++||||||++||+.. .++.+.++ +.++|++ ..||++++|.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP-DLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBT-TBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcC-CCEEEEEECCHHHHHhCCEEEEEE
Confidence 399999997622 2 5899999999999999992 23333322 6788887 5689998885
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=9.8e-09 Score=99.57 Aligned_cols=47 Identities=26% Similarity=0.255 Sum_probs=38.9
Q ss_pred eeeeEEcCCcEEEEEcCCCChHHHHHHHHhh--Ccc-CccEEEECCeeCC
Q 024032 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYS--VLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 90 ~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g--l~~-~~G~I~i~g~~i~ 136 (273)
.+.+++.++..+.|.|++||||||+++.|.. ++. +.|++.+.+.|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 4678889999999999999999999999875 455 7788887666654
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.9e-08 Score=94.60 Aligned_cols=147 Identities=11% Similarity=0.048 Sum_probs=89.8
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc-EEEECCeeCCC--CCccE-EEEeccchhhhccCCccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVLFAQTSSGN--SSHTI-TMYMEEHNVMRSLQSGFCVY 162 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G-~I~i~g~~i~~--~~~~i-~~v~q~~~~~~~~~~~~tv~ 162 (273)
|+++..-+++|+++.|.|++|+|||||+..+++... ..| .|.+.+..... +..++ +.... .. +. .+.
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-~~-~~------~l~ 264 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGN-IN-AQ------NLR 264 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHT-CC-HH------HHH
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcC-CC-HH------HHh
Confidence 888887899999999999999999999999998765 445 45543322211 11110 00000 00 00 010
Q ss_pred ccccCCH---HHHHHHHHHhc---------ccCCHHHHHHH-H-h--cCCCCEEEEcCcCCCCCHH--------------
Q 024032 163 DSRGFNY---NRVHEGLEELS---------SWMSEGVHHNQ-R-C--LRSDDCALMKNDAEIDDLK-------------- 212 (273)
Q Consensus 163 en~~~~~---~~~~~~l~~~~---------~~LSgGqkq~~-r-~--l~~p~iLlLDEPts~LD~~-------------- 212 (273)
+..+.. +++.++++.+. ..+|.++.+.. + + -.+|+++++|+++...+..
T Consensus 265 -~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~ 343 (454)
T 2r6a_A 265 -TGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEIS 343 (454)
T ss_dssp -TSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHH
T ss_pred -cCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHH
Confidence 011222 23444454443 35799887633 2 2 2589999999999877431
Q ss_pred HHHHHHHhcCCcEEEEce---------------------------eCCEEEEEeCCeE
Q 024032 213 SSPKYVLRRVDFAMVVSN---------------------------IAEIYKALKAGDS 243 (273)
Q Consensus 213 ~~l~~l~~~~g~tiiiv~---------------------------~ad~i~vl~~G~i 243 (273)
..++.++++.|.+||++. .||.|++|..++.
T Consensus 344 ~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 344 RSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 235667666789998882 2688999877654
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.52 E-value=6.1e-08 Score=82.60 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=26.4
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999876
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=5.6e-08 Score=80.88 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=29.5
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc--CccEEEE
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS--RSGLVLF 130 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i 130 (273)
.+|++++|+||||||||||+++|+++++ ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 3689999999999999999999999875 3566544
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3e-08 Score=85.85 Aligned_cols=43 Identities=19% Similarity=0.197 Sum_probs=37.0
Q ss_pred eeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeC
Q 024032 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSS 135 (273)
Q Consensus 90 ~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i 135 (273)
+-+.+.++|++++|+|+||||||||+++|+|+ .|.|.+.+++.
T Consensus 12 ~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~---~g~v~~~~~~~ 54 (230)
T 2vp4_A 12 TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY---KNDICLLTEPV 54 (230)
T ss_dssp CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG---TTTEEEECCTH
T ss_pred CccCCCCCceEEEEECCCCCCHHHHHHHHHhc---cCCeEEEecCH
Confidence 33456689999999999999999999999997 78898888764
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.46 E-value=2.1e-07 Score=86.08 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=29.1
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEE
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL 129 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~ 129 (273)
-+++|+++.|.||+|||||||+..++.... ..|.+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vl 93 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAA 93 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence 578999999999999999999888876554 444443
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.42 E-value=7.2e-08 Score=81.62 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=36.6
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeC
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i 135 (273)
..++|++++|+|+||||||||+++|+++++ ..|.|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 357889999999999999999999999998 888888766553
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.42 E-value=7.3e-08 Score=88.16 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=44.5
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
+++++|++++|++++|+||||+||||++..|++.+. ..|+|.+.+.|+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 478999999999999999999999999999999998 8999999887763
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1e-07 Score=95.28 Aligned_cols=118 Identities=17% Similarity=0.187 Sum_probs=67.3
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc---CccEEEECCeeCCCC-----CccEEEEeccchhhhccCCcccccc
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSSGNS-----SHTITMYMEEHNVMRSLQSGFCVYD 163 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~---~~G~I~i~g~~i~~~-----~~~i~~v~q~~~~~~~~~~~~tv~e 163 (273)
+++++++..++|+|++|+|||||++.|++... ..|+| .+|..+.+. ++.+.+..+...+... ....+++|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~nliD 80 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVFLLD 80 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEEEEe
Confidence 46778999999999999999999999997643 57888 566555432 2334444443332111 11224455
Q ss_pred cccCCH--HHHHHHHHHhcccCCHHHHHHHHhcCCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEc
Q 024032 164 SRGFNY--NRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 164 n~~~~~--~~~~~~l~~~~~~LSgGqkq~~r~l~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv 229 (273)
.++... ..+...+. ..++-++++| |+.++++. ..++.+.+ .+.+++++
T Consensus 81 TpG~~~f~~~~~~~l~----------------~ad~~ilVvD-~~~g~~~qt~~~~~~~~~-~~ip~ilv 132 (665)
T 2dy1_A 81 APGYGDFVGEIRGALE----------------AADAALVAVS-AEAGVQVGTERAWTVAER-LGLPRMVV 132 (665)
T ss_dssp CCCSGGGHHHHHHHHH----------------HCSEEEEEEE-TTTCSCHHHHHHHHHHHH-TTCCEEEE
T ss_pred CCCccchHHHHHHHHh----------------hcCcEEEEEc-CCcccchhHHHHHHHHHH-ccCCEEEE
Confidence 444321 11111111 3566788888 88888877 33444433 36666555
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.40 E-value=7.9e-09 Score=100.03 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=70.5
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCC-----CccEEEEeccchhhhccCCccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNS-----SHTITMYMEEHNVMRSLQSGFCVY 162 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~-----~~~i~~v~q~~~~~~~~~~~~tv~ 162 (273)
++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.++... .+++..++++... ......+.
T Consensus 56 ~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~---~~p~il~I 129 (499)
T 2dhr_A 56 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFVEMFVGVGAARVRDLFETAKR---HAPCIVFI 129 (499)
T ss_dssp TTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSS---SSSCEEEE
T ss_pred hhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHh---cCCCEEEE
Confidence 88889999999 89999999999999999999764 67888888765421 1223333443321 01122333
Q ss_pred cccc-----------CCHHHHHHHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCC
Q 024032 163 DSRG-----------FNYNRVHEGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAE 207 (273)
Q Consensus 163 en~~-----------~~~~~~~~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts 207 (273)
|+.. ...++..+.+..+...||||++|+. .+ ..+|++ |||+..
T Consensus 130 DEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 130 DEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp ECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred ehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhh--cCcccc
Confidence 3311 1123344556666677999986643 22 456666 788775
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-07 Score=77.46 Aligned_cols=38 Identities=26% Similarity=0.258 Sum_probs=32.6
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSG 136 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~ 136 (273)
.+|++++|+|||||||||++++|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---CcEEEeCcccc
Confidence 568999999999999999999999865 77888776653
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=8.4e-09 Score=94.38 Aligned_cols=77 Identities=23% Similarity=0.240 Sum_probs=56.0
Q ss_pred EEEEEEEeecCCeeeeccceeeeeeEEcCC-------cEEEEEcCCCChHHHHHHHHhhCc----c-CccEEEECCeeCC
Q 024032 69 LRHKFLSYRSGDFWIPIGGIQKGGMDIPPV-------ITILLMGFSGSGKSSLVNLMYSVL----S-RSGLVLFAQTSSG 136 (273)
Q Consensus 69 ~~~v~~~y~~g~~~v~~~~L~~is~~i~~G-------e~~aivGpnGsGKSTLl~ll~gl~----~-~~G~I~i~g~~i~ 136 (273)
.++++..| |+..+ ++++++.+++| +.++|+||||+|||||+++|+|.+ . .+|.+...+.++.
T Consensus 21 ~~~l~~~~--g~~~~----~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~ 94 (334)
T 1in4_A 21 PKSLDEFI--GQENV----KKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA 94 (334)
T ss_dssp CSSGGGCC--SCHHH----HHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHH
T ss_pred CccHHHcc--CcHHH----HHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHH
Confidence 33444433 44445 89999999876 899999999999999999999987 5 6787776665543
Q ss_pred C-----CCccEEEEeccchh
Q 024032 137 N-----SSHTITMYMEEHNV 151 (273)
Q Consensus 137 ~-----~~~~i~~v~q~~~~ 151 (273)
. .+..+.++.+...+
T Consensus 95 ~~~~~~~~~~v~~iDE~~~l 114 (334)
T 1in4_A 95 AILTSLERGDVLFIDEIHRL 114 (334)
T ss_dssp HHHHHCCTTCEEEEETGGGC
T ss_pred HHHHHccCCCEEEEcchhhc
Confidence 1 23567777775543
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-06 Score=80.01 Aligned_cols=113 Identities=14% Similarity=0.100 Sum_probs=64.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccCCHHHHHHHH
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGFNYNRVHEGL 176 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~~~~~~~~l 176 (273)
..-.++|+|++|+|||||++.++|... ...+.+.......++.+.++.. .+.+.|..+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-----~~~~~~~~t~~~~~~~~~~~~~-------~~~l~Dt~G~~~------- 226 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-----EIASYPFTTRGINVGQFEDGYF-------RYQIIDTPGLLD------- 226 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-----EEECCTTCSSCEEEEEEEETTE-------EEEEEECTTTSS-------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-----ccCCCCCeeeceeEEEEEecCc-------eEEEEeCCCccc-------
Confidence 344889999999999999999998543 1111111111112233322211 123455444321
Q ss_pred HHhcccCCHHHHHHHHh---cCCCCEEEEc-CcCCCCCHHHH---HHHHHhcC-CcEEEEc
Q 024032 177 EELSSWMSEGVHHNQRC---LRSDDCALMK-NDAEIDDLKSS---PKYVLRRV-DFAMVVS 229 (273)
Q Consensus 177 ~~~~~~LSgGqkq~~r~---l~~p~iLlLD-EPts~LD~~~~---l~~l~~~~-g~tiiiv 229 (273)
.....+|++++|+..+ ..++-++++| +|..++|.... +..+.... +..++++
T Consensus 227 -~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV 286 (357)
T 2e87_A 227 -RPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVV 286 (357)
T ss_dssp -SCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEE
T ss_pred -cchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1124578888776543 3566789999 99999988743 33443322 5666666
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.4e-07 Score=88.15 Aligned_cols=42 Identities=24% Similarity=0.218 Sum_probs=37.5
Q ss_pred ceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEE
Q 024032 87 GIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLF 130 (273)
Q Consensus 87 ~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i 130 (273)
+|+++++.+++|++++|+||||||||||+++|+|.+ .|.+..
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~--~g~~~~ 199 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC--GGKALN 199 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH--CCEEEC
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc--CCcEEE
Confidence 489999999999999999999999999999999864 566654
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-06 Score=81.01 Aligned_cols=41 Identities=29% Similarity=0.367 Sum_probs=32.0
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh--Ccc-CccEEEEC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS--VLS-RSGLVLFA 131 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g--l~~-~~G~I~i~ 131 (273)
|++++++++ .++|+|++|||||||++.|.| +++ .+|.+...
T Consensus 27 l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~ 70 (360)
T 3t34_A 27 LPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRR 70 (360)
T ss_dssp C----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCS
T ss_pred cccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCc
Confidence 999999998 999999999999999999999 566 67766533
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.27 E-value=2e-07 Score=91.19 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=37.1
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc-EEE-ECCeeC
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVL-FAQTSS 135 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G-~I~-i~g~~i 135 (273)
.+++|++++|+|+||||||||+++|++.+. .+| .+. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 578999999999999999999999999988 776 675 888664
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.25 E-value=3.6e-07 Score=86.30 Aligned_cols=33 Identities=30% Similarity=0.410 Sum_probs=28.4
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Cc
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RS 125 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~ 125 (273)
+++.+|++++|+||||||||||+++|+++.. .+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 4567899999999999999999999999876 44
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=7.9e-08 Score=82.01 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=40.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCc---c-CccEEEE--------CCeeCCC------CCccEEEEeccc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVL---S-RSGLVLF--------AQTSSGN------SSHTITMYMEEH 149 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~---~-~~G~I~i--------~g~~i~~------~~~~i~~v~q~~ 149 (273)
+.+++|+|||||||||+.++|++.+ . ++|.+.. .|.++.. +++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5689999999999999999999876 5 7888876 5665542 345567777754
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.6e-07 Score=86.08 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=35.5
Q ss_pred eeeeeeEEcCCc------EEEEEcCCCChHHHHHHHHhhCcc---CccEEEE
Q 024032 88 IQKGGMDIPPVI------TILLMGFSGSGKSSLVNLMYSVLS---RSGLVLF 130 (273)
Q Consensus 88 L~~is~~i~~Ge------~~aivGpnGsGKSTLl~ll~gl~~---~~G~I~i 130 (273)
|++++..+..+. ++||+||||||||||+++|.+++. ..|.+.+
T Consensus 76 l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 76 LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 777887777776 999999999999999999999876 3455443
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=7.5e-07 Score=74.42 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=30.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc-----------c-CccEEEECCeeC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL-----------S-RSGLVLFAQTSS 135 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~-----------~-~~G~I~i~g~~i 135 (273)
.++|+|+||||||||++.++|.. . ..|.|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 57999999999999999999973 1 257899998754
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.4e-06 Score=79.31 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=34.6
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEE-EECCee
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLV-LFAQTS 134 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I-~i~g~~ 134 (273)
-+++|+++.|.||+|||||||+..++.... ..|.+ ++++..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 478999999999999999999999999877 66765 555544
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.20 E-value=3.1e-07 Score=84.34 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=43.6
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i 135 (273)
++++++.+.+|.+++|+|++|+|||||++.|++.+. ..|.+.+-+.+.
T Consensus 46 ~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 46 LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 889999999999999999999999999999999988 888887766554
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.19 E-value=6.6e-07 Score=76.44 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=26.4
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+...+|++++|+||||||||||++.|.+.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4446899999999999999999999998764
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=98.13 E-value=8.8e-07 Score=72.22 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998653
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.6e-06 Score=76.85 Aligned_cols=120 Identities=12% Similarity=0.082 Sum_probs=71.5
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccccc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRG 166 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~ 166 (273)
|+.+.--+++|+++.|.|++|+|||||+.-++.... ..+.| .|+.-+...- .+...+ +....+
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~V--------------l~fSlEms~~-ql~~Rl-ls~~~~ 99 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGV--------------AVFSLEMSAE-QLALRA-LSDLTS 99 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEE--------------EEEESSSCHH-HHHHHH-HHHHHC
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE--------------EEEeCCCCHH-HHHHHH-HHHhhC
Confidence 777666799999999999999999999988876433 22222 2221111000 000000 000001
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHH-h---cCCCCEEEEcCcCCCCCHH-HHHHHHHhcC-CcEEEEc
Q 024032 167 FNYNRVHEGLEELSSWMSEGVHHNQR-C---LRSDDCALMKNDAEIDDLK-SSPKYVLRRV-DFAMVVS 229 (273)
Q Consensus 167 ~~~~~~~~~l~~~~~~LSgGqkq~~r-~---l~~p~iLlLDEPts~LD~~-~~l~~l~~~~-g~tiiiv 229 (273)
.+...+. ...||.++.++.. + +.+++++|.|+|...++-. ..++.+.++. |..+|||
T Consensus 100 v~~~~l~------~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 100 INMHDLE------SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp CCHHHHH------HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CCHHHHh------cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1111111 1579999988752 1 6788999999987655433 5567777776 7888888
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=98.11 E-value=2.4e-05 Score=70.42 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
++.+++|+|++|+|||||++.|.|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999986
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.7e-06 Score=70.15 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=26.1
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
+++..+++.+| +.+|+|||||||||++.+|.-
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 44555666655 999999999999999999974
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.6e-06 Score=73.15 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=28.3
Q ss_pred eeeEEcCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 91 GGMDIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 91 is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+--++++|.+++|+|++||||||+.++|++.+
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 33467889999999999999999999999875
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.05 E-value=5.8e-07 Score=84.36 Aligned_cols=55 Identities=9% Similarity=-0.045 Sum_probs=48.4
Q ss_pred CCceEEEEEEEEeecCCeeeecccee--------------eeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQ--------------KGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~--------------~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+.++|+|+++.|+.. +.+ |+ |+.+.+.+|+.++|+||+|+|||||++.|++...
T Consensus 131 ~~ri~Fe~ltp~yP~e-r~~----Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHANS-RLR----MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCCS-BCC----CCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC-ccc----cccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 4578899999999753 445 88 8999999999999999999999999999999865
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.8e-06 Score=79.60 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=34.8
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
+++.+++|+|++|||||||+|.|.|.+. ..|.|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 3467999999999999999999999888 8888888776553
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.8e-06 Score=71.12 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=32.2
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCccCcc--EEEECCeeC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSG--LVLFAQTSS 135 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G--~I~i~g~~i 135 (273)
++|++++|+|++||||||+.++|++.+...| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 4789999999999999999999999775445 666666554
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.2e-05 Score=81.60 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=24.8
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+..|+.+.|+||+||||||++.++.+...
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~ 134 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDE 134 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 56788999999999999999998876543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.87 E-value=2.5e-06 Score=83.14 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=40.1
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCe
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~ 133 (273)
++++++++ +|++++|+||||+|||||+++|++.+. ..|.|.+.|.
T Consensus 99 l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 99 VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 78888888 899999999999999999999999988 8888877663
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.87 E-value=5.9e-06 Score=71.63 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=27.3
Q ss_pred eeeeeeEEc---CCcEEEEEcCCCChHHHHHHHHhhCccC
Q 024032 88 IQKGGMDIP---PVITILLMGFSGSGKSSLVNLMYSVLSR 124 (273)
Q Consensus 88 L~~is~~i~---~Ge~~aivGpnGsGKSTLl~ll~gl~~~ 124 (273)
|.++||.+. +|.+++|.||+||||||+++.|+..+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 777777776 9999999999999999999999987654
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=4.8e-06 Score=70.64 Aligned_cols=43 Identities=26% Similarity=0.223 Sum_probs=37.1
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc--EEEECCeeC
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG--LVLFAQTSS 135 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G--~I~i~g~~i 135 (273)
+.+++|.+++|+|++||||||+.+.|++.+. ..| .+.+++..+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4567899999999999999999999999888 788 788876544
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=6.8e-05 Score=64.47 Aligned_cols=27 Identities=37% Similarity=0.508 Sum_probs=23.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-Ccc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSG 126 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G 126 (273)
.++|+|++|+|||||++.|+|... .++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 579999999999999999999765 544
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=9.1e-06 Score=69.09 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=25.8
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
+.+.++++.+| +.+|+|||||||||++.+|.-
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 44555666665 999999999999999999863
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.82 E-value=7.1e-06 Score=77.78 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=40.8
Q ss_pred eeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 89 ~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
++++|+ ++++++++|+|||||||++..|++.+. ..|.|.+.+.|+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 567777 899999999999999999999999998 8889998777654
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.80 E-value=1.1e-05 Score=66.79 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=31.6
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEE
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL 129 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~ 129 (273)
.+...+|.+++|+|++||||||+.+.|+..+. ..|.+.
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 34456899999999999999999999999887 666653
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.79 E-value=1.6e-05 Score=65.94 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=20.7
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
+++++++.++. .++|+|++|+|||||++.+.+
T Consensus 14 l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 14 LASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 88999998887 779999999999999999987
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.79 E-value=5.3e-06 Score=74.94 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=40.8
Q ss_pred ee-eeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCC
Q 024032 89 QK-GGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSG 136 (273)
Q Consensus 89 ~~-is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~ 136 (273)
++ ++|+.+ |++++++|+||+||||++..|++.+. ..|.|.+.+.+..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 45 788876 99999999999999999999999998 8889988776653
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=1.1e-05 Score=67.72 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
+++|+|||||||||+.++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999983
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=1.2e-05 Score=66.77 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=26.3
Q ss_pred eeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 90 KGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 90 ~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
++|++.++|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999864
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.75 E-value=1.1e-05 Score=68.07 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=25.4
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
...+|.+++|+||||||||||.+.|+..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999999998755
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.74 E-value=5.7e-05 Score=68.41 Aligned_cols=111 Identities=8% Similarity=0.048 Sum_probs=67.3
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCCCccEEEEeccchhhhccCCcccccccccC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDSRGF 167 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~ 167 (273)
|+.+.--+++|+++.|.|++|+|||||+.-++.-.-..| ..+.|+.-+.
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-------------~~vl~~slE~------------------ 106 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND-------------DVVNLHSLEM------------------ 106 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-------------CEEEEEESSS------------------
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-------------CeEEEEECCC------------------
Confidence 777776699999999999999999999888774322111 1223322111
Q ss_pred CHHHHHHHHHHh----------ccc--CCHHHHHHHH-h---cCCCCEEEEcCcCCCCCHH-HHHHHHHhcCCcE--EEE
Q 024032 168 NYNRVHEGLEEL----------SSW--MSEGVHHNQR-C---LRSDDCALMKNDAEIDDLK-SSPKYVLRRVDFA--MVV 228 (273)
Q Consensus 168 ~~~~~~~~l~~~----------~~~--LSgGqkq~~r-~---l~~p~iLlLDEPts~LD~~-~~l~~l~~~~g~t--iii 228 (273)
+.+++...+... ... ||.+++++.. + +.++++++.|+|...++-. ..++.+.++.+.. +|+
T Consensus 107 s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVV 186 (315)
T 3bh0_A 107 GKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVM 186 (315)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred CHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEE
Confidence 111111111110 122 7888877652 1 5578899999986443332 4466666665777 888
Q ss_pred c
Q 024032 229 S 229 (273)
Q Consensus 229 v 229 (273)
|
T Consensus 187 I 187 (315)
T 3bh0_A 187 I 187 (315)
T ss_dssp E
T ss_pred E
Confidence 8
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.74 E-value=1.2e-06 Score=81.26 Aligned_cols=57 Identities=18% Similarity=0.150 Sum_probs=34.0
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCe
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQT 133 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~ 133 (273)
+.+.+.++...|. ++.+ +++++|.| +|+|++|+|||||++.|.+... ..|.+...+.
T Consensus 16 ~~v~~~~l~~~~~--~k~~----~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~ 73 (361)
T 2qag_A 16 GYVGFANLPNQVH--RKSV----KKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAAE 73 (361)
T ss_dssp -----CCHHHHHH--THHH----HHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----------
T ss_pred ceEEeccchHHhC--Ceee----cCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCc
Confidence 4566777766553 3445 88888876 9999999999999999998765 5555544443
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.68 E-value=2e-05 Score=64.38 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.0
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367789999999999999999999853
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.67 E-value=2e-05 Score=65.96 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
+++|+|+|||||||+.+.|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999983
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=1.5e-05 Score=66.53 Aligned_cols=32 Identities=19% Similarity=0.443 Sum_probs=29.2
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
++++||..+++ .++|+|++|+|||||++.+.+
T Consensus 16 l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 16 LQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 88999998887 578999999999999999986
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.61 E-value=4.3e-05 Score=62.38 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=5.3e-05 Score=71.64 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=30.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc------------c-CccEEEECCeeC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL------------S-RSGLVLFAQTSS 135 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~------------~-~~G~I~i~g~~i 135 (273)
.++|+|+||+|||||+|.|+|.. . ..|.+.++|..+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 79999999999999999999974 1 468888888754
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00067 Score=61.58 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=22.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+.|.||+|+|||||++.+++...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 789999999999999999998776
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.55 E-value=5e-05 Score=63.28 Aligned_cols=36 Identities=25% Similarity=0.519 Sum_probs=28.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc-C---ccEEEECCee
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS-R---SGLVLFAQTS 134 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~-~---~G~I~i~g~~ 134 (273)
.+++|+|+||||||||++.|.+.+. . -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5889999999999999999998765 3 4677765543
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=4.5e-05 Score=61.51 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999998643
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.52 E-value=4.8e-06 Score=75.73 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=35.5
Q ss_pred eeeeeeEEcCCcE--EEEEcCCCChHHHHHHHHhhCcc-CccE
Q 024032 88 IQKGGMDIPPVIT--ILLMGFSGSGKSSLVNLMYSVLS-RSGL 127 (273)
Q Consensus 88 L~~is~~i~~Ge~--~aivGpnGsGKSTLl~ll~gl~~-~~G~ 127 (273)
++.++..++.|++ +.|.||+|+||||+++++++.+. ..+.
T Consensus 34 ~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 34 ITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 8888999999998 99999999999999999999865 5443
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=1.3e-05 Score=74.38 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=33.2
Q ss_pred ceeeeeeEEcCCcE--EEEEcCCCChHHHHHHHHhhCcc
Q 024032 87 GIQKGGMDIPPVIT--ILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 87 ~L~~is~~i~~Ge~--~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+++.+++.+++|++ ++|+||+||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 47888899999998 99999999999999999998653
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.50 E-value=3.6e-05 Score=64.46 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998754
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.50 E-value=6e-05 Score=69.70 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=27.3
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMY 119 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~ 119 (273)
+++..+++.+| +.+|+|||||||||++.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 66777787775 99999999999999999986
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.46 E-value=7.8e-05 Score=69.12 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=28.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc------------CccEEEECCeeC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS------------RSGLVLFAQTSS 135 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~------------~~G~I~i~g~~i 135 (273)
+++|+|++|||||||+|.|+|... ..|.|.++|.++
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 489999999999999999999653 247788877653
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.46 E-value=6.9e-05 Score=65.09 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=23.4
Q ss_pred eeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 89 QKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 89 ~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+++++.+++| +.|.||+|+|||||+++|++...
T Consensus 38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp -----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 3334444444 78999999999999999998654
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.45 E-value=5.6e-05 Score=62.03 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=22.2
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999984
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=97.43 E-value=9.8e-05 Score=68.45 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEEC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFA 131 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~ 131 (273)
.+..++|+||||||||||++.|.+... ..+.|.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 567899999999999999999998766 77777664
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.40 E-value=7.3e-05 Score=70.20 Aligned_cols=40 Identities=18% Similarity=0.333 Sum_probs=31.3
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhC-----------cc-CccEEEECCe
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSV-----------LS-RSGLVLFAQT 133 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl-----------~~-~~G~I~i~g~ 133 (273)
.+..|..++|||+||+|||||+|.|+|. +. ..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567788999999999999999999997 33 5677776653
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=8.9e-05 Score=63.84 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=23.8
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
+-++|.+++|+|++||||||+.+.|++
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999999999986
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.34 E-value=9.4e-05 Score=60.66 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999864
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0001 Score=59.34 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998653
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.33 E-value=8.1e-05 Score=64.98 Aligned_cols=41 Identities=27% Similarity=0.375 Sum_probs=31.9
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeC
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSS 135 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i 135 (273)
..+++.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-CCcEEEecHHH
Confidence 345677999999999999999999987543 34566777554
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00013 Score=59.37 Aligned_cols=25 Identities=44% Similarity=0.518 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998744
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00054 Score=64.82 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+..+.|.||+|+|||||+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999998653
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=6.2e-05 Score=65.73 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHh---hCcc-CccEE
Q 024032 98 VITILLMGFSGSGKSSLVNLMY---SVLS-RSGLV 128 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~---gl~~-~~G~I 128 (273)
.-+++|.||+||||||+.+.|+ |+.. +.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 3489999999999999999998 4444 56655
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=6.1e-05 Score=63.16 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+++|.|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998776
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00016 Score=59.48 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
+++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46779999999999999999999863
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00016 Score=59.11 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999987544
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00019 Score=60.68 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhh
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999987
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00017 Score=57.68 Aligned_cols=19 Identities=47% Similarity=0.868 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHH
Q 024032 100 TILLMGFSGSGKSSLVNLM 118 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll 118 (273)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00014 Score=69.07 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=34.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSS 135 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i 135 (273)
++.+++++||+||||||++..|++.+. ..+.|.+-+.++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 578999999999999999999999988 888888765554
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0002 Score=59.18 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999744
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0014 Score=61.90 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=30.1
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
|+.+.--+++|+++.|.|++|+|||||+.-++.-..
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 666555589999999999999999999988876443
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00015 Score=59.43 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=22.4
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
.++.++.|.|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4677899999999999999999984
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00021 Score=62.50 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+++|+||||||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998743
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00021 Score=60.16 Aligned_cols=21 Identities=38% Similarity=0.721 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHhhC
Q 024032 101 ILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl 121 (273)
+.|+||||||||||++.|..-
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999988653
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00027 Score=58.48 Aligned_cols=31 Identities=35% Similarity=0.434 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCccCccEEEECC
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQ 132 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g 132 (273)
..+++|+|++||||||+.+.|+.. |...++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC----CCEEEcc
Confidence 358999999999999999999974 5555543
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00031 Score=58.26 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998754
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00027 Score=57.87 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+..+.|+||+||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568899999999999999999854
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0002 Score=59.53 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+++|+|++|||||||++.|.+.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999998765
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00024 Score=57.92 Aligned_cols=23 Identities=43% Similarity=0.729 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998643
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00031 Score=56.89 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.1
Q ss_pred cEEEEEcCCCChHHHHHHHHhh
Q 024032 99 ITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~g 120 (273)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3789999999999999999986
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00035 Score=58.07 Aligned_cols=32 Identities=31% Similarity=0.342 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCccCccEE
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLV 128 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I 128 (273)
+|.+++|.|+.||||||+.+.|+..+...|.+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~ 34 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDV 34 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCE
Confidence 46789999999999999999999866533433
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00028 Score=61.97 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|++|||||||++.|.|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00034 Score=57.55 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++.+++|.|+.||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46779999999999999999999853
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00038 Score=58.11 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=24.0
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.+|.+++|.|+.||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998654
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00038 Score=58.15 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=24.6
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.++|-+++|.|+.||||||+.+.|+..+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999986543
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0019 Score=55.76 Aligned_cols=33 Identities=9% Similarity=0.143 Sum_probs=24.8
Q ss_pred CCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEc
Q 024032 195 RSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv 229 (273)
.+++++++||.- .|+.. +.+..+... |.+||++
T Consensus 88 ~~~dvViIDEaQ-~l~~~~ve~l~~L~~~-gi~Vil~ 122 (223)
T 2b8t_A 88 DETKVIGIDEVQ-FFDDRICEVANILAEN-GFVVIIS 122 (223)
T ss_dssp TTCCEEEECSGG-GSCTHHHHHHHHHHHT-TCEEEEE
T ss_pred CCCCEEEEecCc-cCcHHHHHHHHHHHhC-CCeEEEE
Confidence 358999999974 36554 467777665 8999998
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00045 Score=56.54 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhh
Q 024032 98 VITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999875
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00036 Score=62.34 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=27.1
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQ 132 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g 132 (273)
.++.++.|.|||||||||+.+.|+.-+ ..|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~-~~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET-QGNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT-TTCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh-CCCeEEEec
Confidence 346689999999999999999997532 234566654
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00042 Score=56.64 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++.|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987544
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00046 Score=56.41 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|++|+|||||++.+.+-.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999999853
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0002 Score=59.20 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=24.0
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++.+.+++|.|+.||||||+.+.|+..
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3456779999999999999999999864
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00041 Score=57.61 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7899999999999999999874
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0013 Score=59.87 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=28.9
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
+++..+++ .|.-++|.|+||+|||||...+.+
T Consensus 135 ~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 135 LHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 77877887 788999999999999999998886
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00041 Score=62.00 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=25.1
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35677789999999999999999999854
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00057 Score=54.03 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00041 Score=56.50 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=17.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999999854
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00059 Score=53.52 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00065 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998753
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00052 Score=54.38 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47999999999999999998743
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00065 Score=53.42 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999998863
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0012 Score=54.05 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|++|+|||||++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 679999999999999976655
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00068 Score=53.70 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 579999999999999999987
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00066 Score=54.16 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5799999999999999999874
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00062 Score=53.62 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999874
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00073 Score=57.17 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
+|-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999864
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00065 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998753
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00046 Score=59.27 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.0
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
.+..|+.+++.||+||||||++.++..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 346789999999999999999887754
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00087 Score=53.70 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3447899999999999999999873
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00069 Score=57.68 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=21.2
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
.++.+++|.|+.||||||+.+.|+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 3556899999999999999999985
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.001 Score=61.73 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhC-----------cc-CccEEEECC
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSV-----------LS-RSGLVLFAQ 132 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl-----------~~-~~G~I~i~g 132 (273)
|-.++|||.+|+|||||+|.|++- +. ..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 346899999999999999999982 22 457777655
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00063 Score=53.92 Aligned_cols=22 Identities=45% Similarity=0.543 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00067 Score=53.65 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00059 Score=55.71 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||++.+.+-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00066 Score=60.20 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|++|+|||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00034 Score=67.16 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=27.4
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
++++++.+++| +.|+||+|+|||||+++|++.
T Consensus 41 ~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 41 FNRIGARMPKG--ILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp HHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 56666777777 789999999999999999984
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00074 Score=53.65 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4799999999999999999864
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00074 Score=59.73 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=25.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc-CccEE
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGLV 128 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~-~~G~I 128 (273)
..+.|.||+|+||||++++|++.+. ..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5789999999999999999999876 55533
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00076 Score=54.03 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999874
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00076 Score=53.51 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00069 Score=53.49 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999863
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00072 Score=54.14 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00069 Score=55.33 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHhhC
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl 121 (273)
-.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00078 Score=53.94 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999875
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00071 Score=54.97 Aligned_cols=22 Identities=36% Similarity=0.603 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999875
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00065 Score=54.42 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00078 Score=56.60 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|.||+||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999964
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00081 Score=54.32 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999874
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00098 Score=55.48 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+-+++|+|+.||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4558999999999999999999864
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00073 Score=57.26 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+.++.|+||+||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999999854
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00097 Score=55.43 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhh
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
+..+++|.|+.||||||+.+.|+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999974
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00083 Score=53.07 Aligned_cols=22 Identities=41% Similarity=0.449 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999863
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00088 Score=54.79 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00092 Score=54.30 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999985
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00092 Score=54.54 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhh
Q 024032 98 VITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
..+++|.|+.||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999975
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0008 Score=54.23 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
+++|.|++||||||+.+.|+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999853
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00085 Score=54.34 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999874
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.001 Score=52.85 Aligned_cols=21 Identities=29% Similarity=0.700 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999976
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00095 Score=56.13 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|.||+||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999974
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.001 Score=53.83 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999873
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.001 Score=54.41 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00059 Score=55.07 Aligned_cols=23 Identities=26% Similarity=0.641 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhh
Q 024032 98 VITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999999874
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0011 Score=53.33 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999863
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00099 Score=52.61 Aligned_cols=21 Identities=24% Similarity=0.562 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999976
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0012 Score=52.96 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0011 Score=53.38 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhhC
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl 121 (273)
++++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 58899999999999999999853
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0011 Score=53.01 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999863
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0013 Score=55.26 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 567889999999999999999998655
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0016 Score=58.81 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=25.6
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
-+++|+++.|.||+|+|||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5889999999999999999999988864
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00084 Score=59.07 Aligned_cols=23 Identities=39% Similarity=0.652 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|++|+|||||+|.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998753
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0012 Score=57.71 Aligned_cols=27 Identities=33% Similarity=0.626 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 466899999999999999999987543
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0011 Score=53.72 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 579999999999999999998654
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0011 Score=59.68 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||+|.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0012 Score=53.10 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5799999999999999999863
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0012 Score=52.95 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5799999999999999999874
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0012 Score=52.66 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0012 Score=53.72 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++++|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.001 Score=54.45 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhhC
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999763
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0013 Score=55.00 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|++|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999998743
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0013 Score=52.72 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0012 Score=54.28 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0014 Score=56.70 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhh
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
++-+++|.||+||||||+.+.|+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999999999974
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0011 Score=61.56 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|||++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3699999999999999999985
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0014 Score=54.07 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999875
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0015 Score=54.18 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
..+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999998654
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0014 Score=59.94 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=25.7
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
-+++|+++.|.||+|+|||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999988874
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=59.21 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
+++|+|+.|+|||||+|.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999984
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=53.12 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=57.07 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|++|+|||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0012 Score=53.93 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 579999999999999999987
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00092 Score=64.00 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=30.9
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEE
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL 129 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~ 129 (273)
+.+-+|+..+|+||+|+|||||++.|++-.. ..+.|.
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 6678999999999999999999999988665 444443
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0013 Score=57.73 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|||||||++.+.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5799999999999999999986
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0013 Score=57.04 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHhhC
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl 121 (273)
-+++|.|++||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.00081 Score=56.32 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|+.|+|||||++.|.|-.
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998853
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0013 Score=53.59 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0015 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0012 Score=59.47 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=24.7
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
..+..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3466889999999999999999998765
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0014 Score=53.28 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0011 Score=55.06 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6799999999999999999764
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0015 Score=53.19 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0015 Score=52.99 Aligned_cols=24 Identities=17% Similarity=0.535 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhC
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
.-.++|+|+.|+|||||++.+.+-
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999863
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0014 Score=54.86 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|+.|+|||||++.|++-.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 67999999999999999998753
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0015 Score=53.56 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0016 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhhC
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl 121 (273)
-+++|.|+.||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999999853
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0016 Score=53.78 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|||++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0017 Score=52.29 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 579999999999999999985
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0016 Score=55.51 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
+++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0017 Score=52.36 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 579999999999999999984
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0016 Score=53.78 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 67999999999999999998743
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0018 Score=52.83 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999863
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0016 Score=53.57 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0018 Score=54.85 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
+|-++.|+|+.||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3557899999999999999999753
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0016 Score=57.81 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|+.|||||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999963
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0018 Score=53.04 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 5799999999999999999874
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0017 Score=57.30 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|..|||||||+|.+.|-
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0019 Score=52.83 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0018 Score=56.67 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||++.+.|-
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5799999999999999999985
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0022 Score=51.44 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999999863
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0018 Score=54.90 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||++.+.+-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.002 Score=56.78 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
++..+.|.||+|+|||||++.+++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45578999999999999999999753
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0015 Score=53.61 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999863
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0018 Score=53.50 Aligned_cols=22 Identities=41% Similarity=0.526 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0019 Score=52.53 Aligned_cols=21 Identities=14% Similarity=0.536 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 679999999999999999985
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0075 Score=57.13 Aligned_cols=33 Identities=9% Similarity=0.050 Sum_probs=27.2
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
|+.+---+++|+++.|.|++|+|||||+--++.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 454443589999999999999999999877765
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.002 Score=52.31 Aligned_cols=22 Identities=45% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.00094 Score=59.76 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=19.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
++-++||-||+||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998744
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0019 Score=55.26 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=24.9
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCccC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLSR 124 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~~ 124 (273)
.+|.+++|-|+.||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999876653
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0014 Score=53.45 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999998754
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.002 Score=52.69 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6799999999999999999874
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.002 Score=57.12 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhh
Q 024032 98 VITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0019 Score=53.49 Aligned_cols=22 Identities=45% Similarity=0.543 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6799999999999999999864
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0019 Score=53.04 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6799999999999999999874
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0018 Score=53.69 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5799999999999999999863
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0021 Score=52.53 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999863
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0018 Score=52.80 Aligned_cols=22 Identities=23% Similarity=0.597 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999999874
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.002 Score=53.89 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5799999999999999988764
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0019 Score=54.34 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0022 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6799999999999999999874
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0018 Score=52.50 Aligned_cols=22 Identities=14% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999999863
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0026 Score=51.05 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999987543
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0017 Score=52.11 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999873
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0022 Score=53.31 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0018 Score=56.01 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=22.3
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
..+|-+++|-|++||||||+.+.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999987654
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0024 Score=53.08 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999999864
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0026 Score=52.11 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6799999999999999988763
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0023 Score=56.48 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhh
Q 024032 99 ITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~g 120 (273)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0023 Score=53.50 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0025 Score=53.13 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0024 Score=55.75 Aligned_cols=22 Identities=45% Similarity=0.638 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.|.|-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5699999999999999999984
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0029 Score=54.07 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+..+.|+|+.||||||+.+.|+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4458899999999999999999854
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0026 Score=52.27 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6799999999999999999863
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0022 Score=56.36 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|..|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999853
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0025 Score=53.41 Aligned_cols=21 Identities=33% Similarity=0.613 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 579999999999999999986
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0024 Score=55.87 Aligned_cols=23 Identities=52% Similarity=0.609 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++++|++|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 56999999999999999999743
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0026 Score=52.35 Aligned_cols=23 Identities=43% Similarity=0.745 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|++|+|||||++.+.+-.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 67999999999999999988743
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0022 Score=53.92 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhC
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
+-+++|.|++||||||+.+.|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 347899999999999999999874
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0028 Score=55.86 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=22.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc-CccE
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS-RSGL 127 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~-~~G~ 127 (273)
-.++++|.+|+|||||+|.|.|-.. ..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 5789999999999999999998654 4443
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0032 Score=57.81 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
++.++.|+||+|||||||...|+.-+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999998643
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0017 Score=52.38 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=9.2
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 579999999999999999875
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0026 Score=58.43 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 378999999999999999998644
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0027 Score=52.46 Aligned_cols=22 Identities=18% Similarity=0.384 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999874
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0024 Score=57.18 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
..+.|.||+|+|||||++.|++.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH
Confidence 3568999999999999999998655
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0028 Score=53.28 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|+.|+|||||++.+++-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 67999999999999999988643
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0028 Score=59.42 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=24.0
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
+.-.+..++.|+|++||||||+.+.|+.
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3445678999999999999999999875
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.003 Score=54.96 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=24.6
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+|.+++|.|++||||||+++.|...+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987665
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.003 Score=51.59 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0026 Score=52.37 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhh
Q 024032 98 VITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
.-.++|+|+.|+|||||++.+.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999999875
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0034 Score=53.71 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCccCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSG 126 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G 126 (273)
+|.+++|-|++||||||+++.|...+...|
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 478999999999999999999998766333
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0036 Score=57.03 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+.+++|+||+|||||||...|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998543
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0047 Score=52.74 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=26.0
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
++..-+++ .|..+.|+||+|+|||||...|+.
T Consensus 25 lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 25 MHGVLVDI-YGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EESEEEEE-TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred eeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 55555554 678899999999999999998875
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0031 Score=54.21 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=24.8
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
+-.+++..++.|+||.||||+|..+.|+--
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344567789999999999999999999854
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0038 Score=53.62 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=26.7
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCccCccE
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSGL 127 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~ 127 (273)
.+|.+++|-|+.||||||+.+.|...+...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 46889999999999999999999876654333
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0014 Score=62.07 Aligned_cols=42 Identities=24% Similarity=0.397 Sum_probs=31.3
Q ss_pred eEEcCC--cEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 93 MDIPPV--ITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 93 ~~i~~G--e~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
|.+.++ .+++|+|++|+||||++..|++.+. ....+.+-.-+
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 444434 5999999999999999999999876 54456554333
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0037 Score=53.61 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
|.+++|-|+.||||||+.+.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999998654
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0035 Score=53.19 Aligned_cols=22 Identities=41% Similarity=0.714 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|||++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0037 Score=54.61 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.1
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++.-+.|.||+|+|||||++.++..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34556889999999999999999874
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0026 Score=60.20 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||+|.|.|-
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999873
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0016 Score=54.39 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999998853
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0038 Score=51.74 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5799999999999999999864
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0037 Score=52.65 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0045 Score=53.46 Aligned_cols=28 Identities=36% Similarity=0.551 Sum_probs=24.9
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+|.+++|-|++||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987654
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0034 Score=50.35 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+..+.|.||.|+|||||++.++..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 44668999999999999999987543
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0041 Score=51.57 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+.|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999987654
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.004 Score=51.71 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 679999999999999999875
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0045 Score=55.60 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=24.7
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
-+++|+++.|.||+|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988775
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0025 Score=51.84 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=19.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhh
Q 024032 99 ITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~g 120 (273)
=.++|+|+.|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999864
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.004 Score=56.80 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++.|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999998643
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0017 Score=53.35 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=4.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6799999999999999998864
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0029 Score=55.12 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+++-+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 567799999999999999999988654
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0047 Score=58.66 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEE
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF 130 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i 130 (273)
++.+++++|++|+||||++..|+..+. ..-.+.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 467999999999999999999998776 4334544
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0049 Score=51.73 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6799999999999999999864
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0054 Score=52.60 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.-+.|.||+|+|||||++.++..+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999998743
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0047 Score=51.19 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999863
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0057 Score=56.38 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=29.4
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhhCcc-C-ccEEEECC
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS-R-SGLVLFAQ 132 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~-~G~I~i~g 132 (273)
+++|+++.|.||+|+|||||...++.-.. . ...++++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 88999999999999999999988876544 3 23444544
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0014 Score=56.87 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.6
Q ss_pred EEEEcCCCChHHHHHHHHhhCc
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+.|.||+|+|||||++.|+...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6788999999999999999743
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0018 Score=58.12 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=27.5
Q ss_pred eeeeeeEEcCC--cEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 88 IQKGGMDIPPV--ITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 88 L~~is~~i~~G--e~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++.+.-.+..| ..+.|.||+|+|||||++.+++.+.
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44444445555 3489999999999999999998754
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0061 Score=55.38 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhC
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
..+++|+||+|||||||...|+.-
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 347899999999999999999854
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0083 Score=49.83 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=20.5
Q ss_pred CCcEEEEEcCCCChHHHHH-HHHhhC
Q 024032 97 PVITILLMGFSGSGKSSLV-NLMYSV 121 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl-~ll~gl 121 (273)
+|.++.+.||.||||||++ +++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999997 555443
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0066 Score=53.99 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+-.++|+|.+|+|||||+|.|.|-..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 34789999999999999999998653
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.008 Score=50.87 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=21.8
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHH
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLM 118 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll 118 (273)
+++|+++.|.|++|+|||||.--+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHH
Confidence 789999999999999999997544
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0066 Score=51.55 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
++.|+||.||||+|..+.|+.-+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998543
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.011 Score=49.41 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=24.4
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
++..-++ -.|.-+.|.|+||+|||||...+..
T Consensus 7 lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 7 WHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4443333 4678899999999999999887753
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0059 Score=57.42 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|||++|+|||||+|.|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0087 Score=54.74 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
-+++|+|+.|+|||||++.|++.+.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999987664
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0081 Score=56.43 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.+++|+||+|||||||.+.|+.-+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 378999999999999999988543
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0076 Score=53.94 Aligned_cols=23 Identities=52% Similarity=0.784 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHhhC
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl 121 (273)
-.++|+|+.|+|||||++.+.+-
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998764
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0071 Score=55.81 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++..++++|++|+|||||+|.|.|...
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~ 187 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEAT 187 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhcc
Confidence 466899999999999999999998743
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0056 Score=51.23 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHH-HhhC
Q 024032 100 TILLMGFSGSGKSSLVNL-MYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~l-l~gl 121 (273)
.++|+|+.|+|||||++. +.|-
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 579999999999999998 5553
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.0027 Score=52.45 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 679999999999999988874
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0079 Score=56.18 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|.+++|||||+|.|.|-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~ 23 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLV 23 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4799999999999999999875
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0073 Score=54.39 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=23.6
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
..+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455789999999999999999998654
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0093 Score=48.86 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHhhCc
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+.|.||.|+|||||++.++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998754
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.011 Score=50.14 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56889999999999999999987654
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0063 Score=58.03 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.5
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
+.|-.++|+|+.|+|||||+|.|.|-
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34556999999999999999999984
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.01 Score=46.90 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+.-+.|.||+|+|||++.+.|.....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 344578999999999999999987543
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.006 Score=55.68 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|..|+|||||++.|.|.
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTS
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999999985
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0079 Score=55.54 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
++..++++|.+|+|||||+|.|.|-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 56789999999999999999999864
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.012 Score=51.88 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++..+.|.||+|+|||||.+.++..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 344679999999999999999987654
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.01 Score=54.32 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=23.7
Q ss_pred eeeEEcCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 91 GGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 91 is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
+.++++---.++|+|.++||||||++.|++-
T Consensus 151 ~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 151 IVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred HhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 3444444446899999999999999998763
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.0098 Score=57.88 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|..|+|||||+|.|.|-
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999984
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.0095 Score=58.60 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
-+++|+|+.|+|||||+|.|.|-.
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCC
Confidence 478999999999999999999853
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.002 Score=53.20 Aligned_cols=21 Identities=43% Similarity=0.570 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 35 ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999998876
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.016 Score=52.26 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQ 132 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g 132 (273)
+|..+.|.||.|+|||||++.++..+. ....+.+.+
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 456899999999999999999998766 444444443
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.016 Score=53.53 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=24.9
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
-+++|+++.|.||+|+|||||...++.-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 47899999999999999999997776543
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.015 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+||+||.||||||+.+.|+.-
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHH
Confidence 6799999999999999999753
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.015 Score=53.98 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++++|+.|+|||||++.|.|..
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 67999999999999999999854
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.017 Score=56.54 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=27.8
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCccCcc---EEEECC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLSRSG---LVLFAQ 132 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G---~I~i~g 132 (273)
++|-++.|.|++||||||+.+.|...+...| .+.+++
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 3466899999999999999999987655333 344444
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.017 Score=51.22 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
..+.|.||.|+|||+|.+.|+..+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 356778999999999999999753
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.016 Score=50.69 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.-+.|.||+|+|||||++.++..+
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999754
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.018 Score=51.68 Aligned_cols=26 Identities=38% Similarity=0.360 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+.-+.|.||+|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987543
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.014 Score=53.17 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+..+.|.||+|+||||+.++|+..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999999754
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.016 Score=50.43 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+.|.||+|+|||||.+.++..
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5688999999999999999874
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.017 Score=51.96 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+..-+.|.||.|+|||||.+.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 33467899999999999999999754
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.018 Score=51.98 Aligned_cols=26 Identities=19% Similarity=0.574 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+..+.|.||.|+|||||++.++..+.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 34789999999999999999997653
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.15 Score=44.28 Aligned_cols=34 Identities=6% Similarity=-0.032 Sum_probs=26.1
Q ss_pred CCCCEEEEcCcCCCCCHHHHHHHHHhcCCcEEEEc
Q 024032 195 RSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~~~l~~l~~~~g~tiiiv 229 (273)
.+.+++++||.--..|..+.++.+.. .|+.||+.
T Consensus 89 ~~~dvViIDEaQF~~~v~el~~~l~~-~gi~VI~~ 122 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPDIVEFCEAMAN-AGKTVIVA 122 (234)
T ss_dssp TTCSEEEESSGGGCTTHHHHHHHHHH-TTCEEEEE
T ss_pred ccCCEEEEEchhhhhhHHHHHHHHHh-CCCEEEEE
Confidence 46799999998777775566666655 48999888
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.017 Score=57.78 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.2
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+++=.++|+|+.|+|||||+|.|.|--
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345578999999999999999999853
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.017 Score=54.32 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|||.+++|||||+|.+.|-
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~ 24 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKK 24 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.017 Score=54.20 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|.+|+|||||++.+.|-.
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999853
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.018 Score=56.94 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCccCcc--EEEECCe
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSG--LVLFAQT 133 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G--~I~i~g~ 133 (273)
+|.++.|.|.+||||||+.+.|+..+...| .+.+++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 567899999999999999999987653222 4445543
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.016 Score=55.89 Aligned_cols=28 Identities=14% Similarity=0.068 Sum_probs=25.2
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+.|-++.|+|.+||||||+-++|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 5778999999999999999999998765
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.022 Score=51.94 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=22.5
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+..-+.|.||+|+|||||++.|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999864
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.02 Score=52.30 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=24.2
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
-+++|.++.|.||.|+|||||...++.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 577888899999999999999999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 273 | ||||
| d1m8pa3 | 183 | c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d | 2e-04 | |
| d1knqa_ | 171 | c.37.1.17 (A:) Gluconate kinase {Escherichia coli | 0.001 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 0.003 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 0.003 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 0.004 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.004 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 0.004 |
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Score = 38.9 bits (89), Expect = 2e-04
Identities = 14/136 (10%), Positives = 38/136 (27%)
Query: 99 ITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSG 158
TI L G+ SGK ++ + L++ G + H ++ + R
Sbjct: 7 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQ 66
Query: 159 FCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPKYV 218
+ + ++ + ++ L+ ++ + S K
Sbjct: 67 RIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRG 126
Query: 219 LRRVDFAMVVSNIAEI 234
+ + +
Sbjct: 127 IYAAARRGEIKGFTGV 142
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Score = 36.5 bits (83), Expect = 0.001
Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 15/124 (12%)
Query: 101 ILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFC 160
+LMG SGSGKS++ + + L + L N+ +
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFLDGD-------------FLHPRRNIEKMASGEPL 55
Query: 161 VYDSRGFNYNRVHEGLEELSSWMSEGVHHN--QRCLRSDDCALMKNDAEIDDLKSSPKYV 218
D R +++ + + + D + LK +
Sbjct: 56 NDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVI 115
Query: 219 LRRV 222
R+
Sbjct: 116 ESRL 119
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 35.9 bits (82), Expect = 0.003
Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 10/121 (8%)
Query: 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYME 147
+ + +TIL+MG G GKSS VN S++ V+ + +
Sbjct: 22 LGNLKQEDVNSLTILVMGKGGVGKSSTVN---SIIGER--VVSISPFQSEGPRPVMVSRS 76
Query: 148 EHNVMRSLQSGFCVYDSRGFNYNRVHEGLEELSSWMSE-GVHHNQRCLRSDDCALMKNDA 206
++ + + N L + S++ + + R D + D
Sbjct: 77 RAGFTLNIIDTPGLIEGGYIN----DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDK 132
Query: 207 E 207
Sbjct: 133 L 133
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 35.4 bits (80), Expect = 0.003
Identities = 12/103 (11%), Positives = 30/103 (29%), Gaps = 1/103 (0%)
Query: 101 ILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGF 159
I++ G G GK++LV + L R+ + + + + + S
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 160 CVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALM 202
+ V+ E + + + ++
Sbjct: 63 FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIII 105
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 35.3 bits (81), Expect = 0.004
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLM 118
R+ Y+ I + I + I I ++G SGSGKS+L L+
Sbjct: 3 TFRNIRFRYKPDSPVI-LDNIN---LSIKQGEVIGIVGRSGSGKSTLTKLI 49
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 35.0 bits (79), Expect = 0.004
Identities = 16/150 (10%), Positives = 44/150 (29%), Gaps = 4/150 (2%)
Query: 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQ 156
P++ +SG+GK++L+ + L G+ + + ++ +R
Sbjct: 3 PLLAF--AAWSGTGKTTLLKKLIPALCARGIR-PGLIKHTHHDMDVDKPGKDSYELRKAG 59
Query: 157 SGFCVYDSRGFNYNRVHEGLEELSSWMSEGVHHNQRCLRSDDCALMKNDAEIDDLKSSPK 216
+ + S+ + E +E + EI +
Sbjct: 60 AAQTIVASQQRWA-LMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRD 118
Query: 217 YVLRRVDFAMVVSNIAEIYKALKAGDSKPL 246
R + ++ ++ + + L
Sbjct: 119 GAGHRPEELVIDRHVIAVASDVPLNLDVAL 148
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 35.5 bits (82), Expect = 0.004
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 68 ELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLM 118
++ H Y + I + I + I T+ +G SG GKS+L+NL+
Sbjct: 18 DIDHVSFQYNDNEAPI-LKDIN---LSIEKGETVAFVGMSGGGKSTLINLI 64
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 273 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.72 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.63 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.39 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.02 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.7 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.1 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.98 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.93 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.88 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.85 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.81 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.76 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.7 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.69 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.64 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.62 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.61 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.61 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.56 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.54 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.5 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.45 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.44 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.41 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.4 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.38 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.37 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.36 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.33 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.3 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 97.25 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.24 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 97.23 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 97.23 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 97.2 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 97.19 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.18 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.17 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 97.15 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.15 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 97.15 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.14 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 97.14 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 97.12 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 97.07 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 97.07 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.07 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.06 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 97.05 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 97.05 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 97.05 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.05 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 97.03 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.01 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.98 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.92 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.91 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.9 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.87 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.87 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.85 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.83 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.83 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.82 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.8 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.8 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.79 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.77 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.77 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.74 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.73 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.7 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.7 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.68 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.66 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.66 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.66 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.65 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.63 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.63 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.62 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.58 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.57 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.56 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.53 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.53 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.53 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 96.51 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 96.47 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.43 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.42 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.4 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.39 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.39 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.39 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 96.39 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.36 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.35 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.34 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 96.33 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.31 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.31 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.31 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 96.28 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.25 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 96.19 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 96.18 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.18 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 96.18 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.17 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 96.15 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.13 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 96.13 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.11 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 96.11 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.1 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 96.1 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 96.09 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 96.09 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.09 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.07 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.07 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.07 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.06 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.04 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.03 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.02 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 96.01 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 96.01 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 96.0 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 96.0 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 96.0 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.98 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.97 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 95.92 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.9 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.88 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.87 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 95.85 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.83 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.81 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.8 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 95.8 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 95.78 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 95.74 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.74 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 95.73 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.72 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.71 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.71 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.7 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.63 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 95.62 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 95.59 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 95.57 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 95.55 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 95.52 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 95.51 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.49 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 95.48 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 95.48 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.47 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 95.46 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.42 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.42 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 95.39 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 95.38 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 95.36 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 95.28 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.27 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.27 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.25 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 95.22 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.19 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 95.17 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 95.16 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.14 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.12 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 95.06 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.0 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.95 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.94 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.93 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.86 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.82 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.82 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.81 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.78 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 94.74 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.68 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.59 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.58 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 94.53 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.46 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.41 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 94.25 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 94.21 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 94.13 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 94.11 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 93.99 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.94 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.59 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 93.48 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.4 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 93.04 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.91 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 92.82 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 92.62 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 92.62 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 92.6 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 92.52 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.44 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.07 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.04 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 92.04 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 91.93 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 91.77 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 91.63 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 91.6 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 91.49 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 91.42 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 91.02 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 90.67 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 90.51 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 90.09 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 89.72 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 89.67 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 89.31 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 89.08 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 89.08 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 88.78 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 88.46 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 87.5 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 87.29 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 87.24 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 87.17 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 87.07 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 86.74 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.55 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 86.4 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 85.76 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 85.53 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 85.03 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 84.76 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 84.49 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 84.41 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 83.68 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 83.55 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 83.02 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 82.29 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 81.28 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-49 Score=348.12 Aligned_cols=181 Identities=18% Similarity=0.280 Sum_probs=137.6
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i 142 (273)
|+++|++++| ++.++ |+||||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++.. .++.+
T Consensus 1 Iev~nv~k~y--g~~~~----l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~i 74 (232)
T d2awna2 1 VQLQNVTKAW--GEVVV----SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 74 (232)
T ss_dssp EEEEEEEEEE--TTEEE----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCE
T ss_pred CEEEEEEEEE--CCEEE----EeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhcee
Confidence 6899999999 56777 999999999999999999999999999999999999 99999999999864 45679
Q ss_pred EEEeccchhhhccCCcccccccccC-------C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCC
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF-------N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDD 198 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~-------~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~ 198 (273)
+|+||++.++ ..+||+||..+ + .+++.++++.++ .+||||||||. |+ +.+|+
T Consensus 75 g~v~Q~~~l~----~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~ 150 (232)
T d2awna2 75 GMVFQSYALY----PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 150 (232)
T ss_dssp EEECSSCCC-------------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCS
T ss_pred eeeccccccc----cchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999864 45599999422 1 344666777766 78999999986 44 89999
Q ss_pred EEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 199 CALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 199 iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+|||||||+||||. +.++++.++.|+|||++ .+||||++|++|+|++.|++++++++|.
T Consensus 151 illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~ 223 (232)
T d2awna2 151 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 223 (232)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCC
Confidence 99999999999999 34667766679999999 5689999999999999999999997754
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.6e-49 Score=349.91 Aligned_cols=184 Identities=16% Similarity=0.237 Sum_probs=159.1
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
.|+++|++++|+.|+..+ |+||||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 3 ~i~v~nlsk~y~~g~~~a----L~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~ 78 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVA----LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78 (242)
T ss_dssp CEEEEEEEEEEGGGTEEE----EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSC
T ss_pred EEEEEeEEEEECCCCEEE----EeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcc
Confidence 589999999998776666 999999999999999999999999999999999999 99999999998742
Q ss_pred -CCccEEEEeccchhhhccCCcccccccc-------cCCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSR-------GFNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~-------~~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
.+++++++||++.+|+ .+||+||. +.+. +++.++++.++ .+||||||||. |+
T Consensus 79 ~~rr~ig~vfQ~~~L~p----~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARa 154 (242)
T d1oxxk2 79 PEDRKIGMVFQTWALYP----NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARA 154 (242)
T ss_dssp GGGSCEEEEETTSCCCT----TSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred hhhccceEEeccccccc----cccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhH
Confidence 3567999999998654 45999983 2333 44667777776 78999999987 44
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+.+|++|||||||++|||. +.++++.++.|+|||+| .+||||++|++|+|++.|++++++++|.
T Consensus 155 L~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~ 233 (242)
T d1oxxk2 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPV 233 (242)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 7999999999999999999 45677776669999999 5689999999999999999999997764
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.6e-49 Score=346.52 Aligned_cols=182 Identities=19% Similarity=0.293 Sum_probs=153.2
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
.|+++|++++| |+..+ |++|||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. .+++
T Consensus 6 ~I~v~nlsk~y--g~~~a----l~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ 79 (239)
T d1v43a3 6 EVKLENLTKRF--GNFTA----VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN 79 (239)
T ss_dssp CEEEEEEEEEE--TTEEE----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGT
T ss_pred eEEEEEEEEEE--CCEEE----EcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccce
Confidence 58999999999 56777 999999999999999999999999999999999999 99999999999864 4567
Q ss_pred EEEEeccchhhhccCCcccccccc-------cCCH----HHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCC
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSR-------GFNY----NRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSD 197 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~-------~~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p 197 (273)
++|+||++.+|+ .+||+||. +.+. +++.++++.++ .+||||||||. |+ +.+|
T Consensus 80 ig~v~Q~~~l~~----~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P 155 (239)
T d1v43a3 80 ISMVFQSYAVWP----HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEP 155 (239)
T ss_dssp EEEEEC----------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCC
T ss_pred EEEEeechhhcc----cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCC
Confidence 999999998654 45999983 3343 34556677776 78999999987 34 7999
Q ss_pred CEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 198 DCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 198 ~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
++|||||||+||||. +.+++++++.|+|+|+| .+||||++|++|+|++.|++++++++|.
T Consensus 156 ~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~ 229 (239)
T d1v43a3 156 DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 229 (239)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred CceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 999999999999999 44677776669999999 5689999999999999999999997764
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-49 Score=350.00 Aligned_cols=186 Identities=20% Similarity=0.262 Sum_probs=160.6
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
+|+++|++++|..++..+ .||+||||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 1 mi~v~nlsk~y~~~~~~~--~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~ 78 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTI--QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 78 (240)
T ss_dssp CEEEEEEEEEEECSSCEE--EEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHH
T ss_pred CEEEEeEEEEeCCCCeeE--EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhh
Confidence 489999999998776544 45999999999999999999999999999999999999 99999999999863
Q ss_pred -CCccEEEEeccchhhhccCCcccccccc-------cCC----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSR-------GFN----YNRVHEGLEELS---------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~-------~~~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~ 193 (273)
.|+++++|||++.+ ++.+||+||. +.+ .+++.++++.++ .+||||||||. |+
T Consensus 79 ~~rr~ig~VfQ~~~l----~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAra 154 (240)
T d3dhwc1 79 KARRQIGMIFQHFNL----LSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARA 154 (240)
T ss_dssp HHHHHEEECCSSCCC----CTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHH
T ss_pred hhhcccccccccccc----CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhh
Confidence 34679999999875 4556999983 222 356778888887 78999999987 34
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+.+|++|||||||++|||. +.+++++++.|+|||+| .+||||++|++|+|++.|++++++++|.
T Consensus 155 L~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~P~ 233 (240)
T d3dhwc1 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPK 233 (240)
T ss_dssp HHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCSSC
T ss_pred hccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 7999999999999999999 45677777669999999 5689999999999999999999998764
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=5.6e-49 Score=343.94 Aligned_cols=182 Identities=13% Similarity=0.222 Sum_probs=158.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCcc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHT 141 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~ 141 (273)
+|+++|++++|. + .+ |+||||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++.. .++.
T Consensus 1 mi~v~nlsk~y~--~-~a----L~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ 73 (229)
T d3d31a2 1 MIEIESLSRKWK--N-FS----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHD 73 (229)
T ss_dssp CEEEEEEEEECS--S-CE----EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHT
T ss_pred CEEEEEEEEEeC--C-EE----EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhc
Confidence 489999999994 3 35 999999999999999999999999999999999999 99999999999975 3467
Q ss_pred EEEEeccchhhhccCCccccccccc--------CCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 142 ITMYMEEHNVMRSLQSGFCVYDSRG--------FNYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 142 i~~v~q~~~~~~~~~~~~tv~en~~--------~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
++|+||++.+|+ .+||+||.. ...+++.++++.++ .+||||||||. |+ +++|++|
T Consensus 74 ig~v~Q~~~l~~----~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iL 149 (229)
T d3d31a2 74 IAFVYQNYSLFP----HMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKIL 149 (229)
T ss_dssp CEEECTTCCCCT----TSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred ceeeccccccCc----cccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCce
Confidence 999999998644 459999932 24567888888887 78999999987 44 7999999
Q ss_pred EEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 201 LMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 201 lLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
||||||+||||. +.++++.++.|.|||++ .+||||++|++|+|++.|++++++++|..
T Consensus 150 llDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~ 221 (229)
T d3d31a2 150 LLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVE 221 (229)
T ss_dssp EEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCT
T ss_pred eecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 999999999998 45677777779999999 56899999999999999999999987643
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1e-48 Score=344.61 Aligned_cols=182 Identities=17% Similarity=0.282 Sum_probs=156.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
.|+++|++++| |+.++ |+||||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 3 ~i~v~nl~k~y--g~~~a----l~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~ 76 (240)
T d1g2912 3 GVRLVDVWKVF--GEVTA----VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76 (240)
T ss_dssp EEEEEEEEEEE--TTEEE----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEEC
T ss_pred cEEEEeEEEEE--CCEEE----EcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhc
Confidence 58999999999 56667 999999999999999999999999999999999999 99999999998742
Q ss_pred --CCccEEEEeccchhhhccCCcccccccc-------cCCH----HHHHHHHHHhc---------ccCCHHHHHHH---H
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSR-------GFNY----NRVHEGLEELS---------SWMSEGVHHNQ---R 192 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~-------~~~~----~~~~~~l~~~~---------~~LSgGqkq~~---r 192 (273)
.++.+++++|++.++ ..+||+||. +.+. +++.++++.++ .+||||||||. |
T Consensus 77 ~~~~r~ig~v~Q~~~L~----~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAr 152 (240)
T d1g2912 77 PPKDRDIAMVFQSYALY----PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGR 152 (240)
T ss_dssp CGGGSSEEEECSCCCCC----TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred ccccccceecccchhhc----chhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHH
Confidence 256799999999864 445999993 2333 34667777776 78999999987 4
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPG 257 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~ 257 (273)
+ +.+|++|||||||+||||. +.++++.++.|+|||++ .+||||++|++|+|++.|++++++.+|.
T Consensus 153 aL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P~ 232 (240)
T d1g2912 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPA 232 (240)
T ss_dssp HHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 4 7999999999999999999 44667776669999999 5689999999999999999999997764
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.1e-48 Score=340.37 Aligned_cols=179 Identities=16% Similarity=0.213 Sum_probs=154.6
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CCc
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SSH 140 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~~ 140 (273)
|+|+||+|+|+.+++++ |+||||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++.. +|+
T Consensus 2 I~~~nvsf~Y~~~~~~v----L~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~ 77 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVI----LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRR 77 (241)
T ss_dssp EEEEEEEEESSTTSCEE----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred eEEEEEEEEeCCCCcce----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhc
Confidence 78999999998777778 999999999999999999999999999999999999 99999999999974 567
Q ss_pred cEEEEeccchhhhccCCccccccccc-----CCHHHHHHHHHHhc--------------------ccCCHHHHHHH---H
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSRG-----FNYNRVHEGLEELS--------------------SWMSEGVHHNQ---R 192 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~~-----~~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r 192 (273)
++++|+|++. +|..||+||.. .+.+++.++++..+ ..||||||||+ |
T Consensus 78 ~i~~v~Q~~~-----lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalAR 152 (241)
T d2pmka1 78 QVGVVLQDNV-----LLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 152 (241)
T ss_dssp HEEEECSSCC-----CTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHH
T ss_pred eEEEEecccc-----cCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhh
Confidence 8999999986 45569999943 45666666666544 57999999987 4
Q ss_pred h-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 193 C-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 193 ~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
+ +++|++||||||||+||+. +.++++.+ ++|+|+| +.||+|++|++|+|++.|+++++++++
T Consensus 153 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~ 228 (241)
T d2pmka1 153 ALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEP 228 (241)
T ss_dssp HHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHST
T ss_pred hhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC--CCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 4 8999999999999999999 33455544 8899999 568999999999999999999999764
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5e-48 Score=338.39 Aligned_cols=178 Identities=19% Similarity=0.217 Sum_probs=149.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS------ 138 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~------ 138 (273)
+|+++|++++|..++.++ .||+||||+|++||++||+||||||||||+++|+|+++ ++|+|+++|+++...
T Consensus 1 mI~i~nlsk~y~~~~~~~--~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~ 78 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEII--YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT 78 (230)
T ss_dssp CEEEEEEEEEEEETTEEE--EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred CEEEEeEEEEeCCCCeeE--EEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcc
Confidence 489999999998776654 45999999999999999999999999999999999999 999999999998642
Q ss_pred ---CccEEEEeccchhhhccCCccccccccc----------CCH----HHHHHHHHHhc----------ccCCHHHHHHH
Q 024032 139 ---SHTITMYMEEHNVMRSLQSGFCVYDSRG----------FNY----NRVHEGLEELS----------SWMSEGVHHNQ 191 (273)
Q Consensus 139 ---~~~i~~v~q~~~~~~~~~~~~tv~en~~----------~~~----~~~~~~l~~~~----------~~LSgGqkq~~ 191 (273)
++.++++||++.+ ++.+||+||.. .+. +++.+.++.++ .+||||||||+
T Consensus 79 ~~r~~~ig~v~Q~~~l----~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 79 KIRRDKIGFVFQQFNL----IPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHHHHEEEECTTCCC----CTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH
T ss_pred hhhcceEEEEecchhh----CcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHH
Confidence 3469999999876 44569999821 222 23445555544 57999999987
Q ss_pred ---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecCh
Q 024032 192 ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDAT 249 (273)
Q Consensus 192 ---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~ 249 (273)
|+ +.+|++|||||||++|||. +.++++.++.|+|||+| ++||||++|++|+|+++|++
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 44 7999999999999999999 45677877779999999 66899999999999998864
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=8.3e-48 Score=339.43 Aligned_cols=188 Identities=15% Similarity=0.209 Sum_probs=158.0
Q ss_pred CCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC----
Q 024032 64 DGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS---- 138 (273)
Q Consensus 64 ~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~---- 138 (273)
+-+++++|++++| |+..+ |+||||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++...
T Consensus 4 d~~Lev~~l~k~y--g~~~a----l~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~ 77 (240)
T d1ji0a_ 4 DIVLEVQSLHVYY--GAIHA----IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp SEEEEEEEEEEEE--TTEEE----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHH
T ss_pred ceEEEEeeEEEEE--CCEEE----EeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHH
Confidence 3478999999999 56777 999999999999999999999999999999999999 999999999998742
Q ss_pred --CccEEEEeccchhhhccCCcccccccccC------C----HHHHHHHHHHhc----------ccCCHHHHHHH---Hh
Q 024032 139 --SHTITMYMEEHNVMRSLQSGFCVYDSRGF------N----YNRVHEGLEELS----------SWMSEGVHHNQ---RC 193 (273)
Q Consensus 139 --~~~i~~v~q~~~~~~~~~~~~tv~en~~~------~----~~~~~~~l~~~~----------~~LSgGqkq~~---r~ 193 (273)
+..+++++|+..+|+ .+||+||..+ . .+.+.++++.+. .+||||||||. |+
T Consensus 78 ~~r~gi~~~~q~~~l~~----~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAra 153 (240)
T d1ji0a_ 78 INRMGIALVPEGRRIFP----ELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp HHHTTEEEECSSCCCCT----TSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHH
T ss_pred HHHhcccccCcccccCC----cccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHH
Confidence 234889999988644 4599998211 1 222333443321 68999999987 34
Q ss_pred -cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhh
Q 024032 194 -LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGL 258 (273)
Q Consensus 194 -l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l 258 (273)
+.+|++|||||||+||||. +.+++++++ |+|||++ .+||||++|++|+|++.|+++++++++.+
T Consensus 154 L~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~-g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~v 232 (240)
T d1ji0a_ 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE-GTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMV 232 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCHHH
T ss_pred HHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcCHHH
Confidence 8999999999999999999 557778776 9999999 66899999999999999999999999999
Q ss_pred HHHh
Q 024032 259 RKCS 262 (273)
Q Consensus 259 ~~~~ 262 (273)
.++|
T Consensus 233 ~~~y 236 (240)
T d1ji0a_ 233 RKAY 236 (240)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8887
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=7e-48 Score=340.29 Aligned_cols=185 Identities=15% Similarity=0.180 Sum_probs=154.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-----CC
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN-----SS 139 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~-----~~ 139 (273)
+++++||+|+|+. ++++ |+||||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++.. ++
T Consensus 1 mle~knvsf~Y~~-~~~v----L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r 75 (242)
T d1mv5a_ 1 MLSARHVDFAYDD-SEQI----LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWR 75 (242)
T ss_dssp CEEEEEEEECSSS-SSCS----EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCT
T ss_pred CEEEEEEEEECCC-CCce----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHH
Confidence 4899999999964 3456 999999999999999999999999999999999999 99999999998863 67
Q ss_pred ccEEEEeccchhhhccCCccccccccc------CCHHHHHHHHHHhc--------------------ccCCHHHHHHH--
Q 024032 140 HTITMYMEEHNVMRSLQSGFCVYDSRG------FNYNRVHEGLEELS--------------------SWMSEGVHHNQ-- 191 (273)
Q Consensus 140 ~~i~~v~q~~~~~~~~~~~~tv~en~~------~~~~~~~~~l~~~~--------------------~~LSgGqkq~~-- 191 (273)
+++++|+|++.+ |..|++||.. ...+.+.++++.+. ..||||||||+
T Consensus 76 ~~i~~v~Q~~~l-----f~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~i 150 (242)
T d1mv5a_ 76 SQIGFVSQDSAI-----MAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAI 150 (242)
T ss_dssp TTCCEECCSSCC-----CCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHH
T ss_pred hheEEEcccccc-----CCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHH
Confidence 889999999874 4559999842 24556666666554 35999999987
Q ss_pred -Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 192 -RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 192 -r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
|+ +++|+|||||||||+||+. +.++++.+ |+|+|+| ..||+|++|++|+|++.|+++++++..
T Consensus 151 ARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~ 228 (242)
T d1mv5a_ 151 ARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH 228 (242)
T ss_dssp HHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHC
T ss_pred HHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 44 7899999999999999999 44566654 8999999 458999999999999999999999654
Q ss_pred h-hHHHh
Q 024032 257 G-LRKCS 262 (273)
Q Consensus 257 ~-l~~~~ 262 (273)
. +.+.+
T Consensus 229 ~~y~~l~ 235 (242)
T d1mv5a_ 229 PLYAKYV 235 (242)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3 34443
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.8e-47 Score=339.26 Aligned_cols=181 Identities=18% Similarity=0.231 Sum_probs=154.4
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC-------
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN------- 137 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~------- 137 (273)
.|+++|++++| |+..+ |+||||+|++||++||+||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 2 ~Lev~nl~k~y--g~~~a----l~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~ 75 (258)
T d1b0ua_ 2 KLHVIDLHKRY--GGHEV----LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 75 (258)
T ss_dssp CEEEEEEEEEE--TTEEE----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSS
T ss_pred eEEEEEEEEEE--CCEEE----EcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchh
Confidence 58999999999 56667 999999999999999999999999999999999999 99999999999852
Q ss_pred -----------CCccEEEEeccchhhhccCCcccccccc--------cCC----HHHHHHHHHHhc----------ccCC
Q 024032 138 -----------SSHTITMYMEEHNVMRSLQSGFCVYDSR--------GFN----YNRVHEGLEELS----------SWMS 184 (273)
Q Consensus 138 -----------~~~~i~~v~q~~~~~~~~~~~~tv~en~--------~~~----~~~~~~~l~~~~----------~~LS 184 (273)
.+++++++||++.+ +..+||+||. +.+ .+++.++++.++ .+||
T Consensus 76 ~~~~~~~~~~~~r~~ig~vfQ~~~l----~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LS 151 (258)
T d1b0ua_ 76 LKVADKNQLRLLRTRLTMVFQHFNL----WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLS 151 (258)
T ss_dssp EEESCHHHHHHHHHHEEEECSSCCC----CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSC
T ss_pred cccccHhHHHHHhcceEEEEechhh----ccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCccccc
Confidence 34679999999876 4455999883 222 234556666665 7899
Q ss_pred HHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
|||+||. |+ +.+|++|||||||+|||+. +.+++++++ |+|||+| .+||||+||++|+|++.
T Consensus 152 GG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~-g~til~vtHdl~~~~~~adri~vm~~G~iv~~ 230 (258)
T d1b0ua_ 152 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 230 (258)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhccc-CCceEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999987 33 7899999999999999999 456777766 9999998 56999999999999999
Q ss_pred cChhhhccChh
Q 024032 247 DATKRLFSAPG 257 (273)
Q Consensus 247 g~~~~l~~~~~ 257 (273)
|++++++++|.
T Consensus 231 g~~~ev~~~P~ 241 (258)
T d1b0ua_ 231 GDPEQVFGNPQ 241 (258)
T ss_dssp ECHHHHHHSCC
T ss_pred cCHHHHHhCCC
Confidence 99999997654
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-47 Score=337.12 Aligned_cols=187 Identities=17% Similarity=0.233 Sum_probs=151.2
Q ss_pred CCCceEEEEEEEEeecC-CeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---
Q 024032 63 PDGLNELRHKFLSYRSG-DFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN--- 137 (273)
Q Consensus 63 ~~~~i~~~~v~~~y~~g-~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~--- 137 (273)
.++.|+++||+|+|+.. +..+ |+||||+|++||++|||||||||||||+++|+|+++ ++|+|+++|+++..
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~v----L~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~ 83 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLV----LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEH 83 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCS----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCH
T ss_pred ccceEEEEEEEEECCCCCCCEe----EeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhh
Confidence 35679999999999643 3345 999999999999999999999999999999999999 99999999999864
Q ss_pred --CCccEEEEeccchhhhccCCcccccccccC------CHHHHHHHHHHhc--------------------ccCCHHHHH
Q 024032 138 --SSHTITMYMEEHNVMRSLQSGFCVYDSRGF------NYNRVHEGLEELS--------------------SWMSEGVHH 189 (273)
Q Consensus 138 --~~~~i~~v~q~~~~~~~~~~~~tv~en~~~------~~~~~~~~l~~~~--------------------~~LSgGqkq 189 (273)
+++++++++|++.+ |..||++|..+ ....+.++.+... .+|||||||
T Consensus 84 ~~~r~~i~~v~Q~~~l-----f~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQ 158 (251)
T d1jj7a_ 84 RYLHRQVAAVGQEPQV-----FGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQ 158 (251)
T ss_dssp HHHHHHEEEECSSCCC-----CSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHH
T ss_pred HHHHHHhhhccccccc-----cCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHce
Confidence 56789999999874 45699998422 2233332222211 579999999
Q ss_pred HH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhh
Q 024032 190 NQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRL 252 (273)
Q Consensus 190 ~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l 252 (273)
|. |+ +++|++|||||||++||+. +.++++.++.++|+|+| ..||||++|++|+|++.|+++++
T Consensus 159 RvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eL 238 (251)
T d1jj7a_ 159 AVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQL 238 (251)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHH
T ss_pred EEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 87 44 8999999999999999998 22334444558899999 55899999999999999999999
Q ss_pred ccChhh
Q 024032 253 FSAPGL 258 (273)
Q Consensus 253 ~~~~~l 258 (273)
++++..
T Consensus 239 l~~~~~ 244 (251)
T d1jj7a_ 239 MEKKGC 244 (251)
T ss_dssp HHHTSH
T ss_pred HhCCcH
Confidence 865443
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.3e-47 Score=336.20 Aligned_cols=183 Identities=16% Similarity=0.229 Sum_probs=154.0
Q ss_pred CCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----
Q 024032 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 63 ~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---- 137 (273)
..+.|+++||+|+|+.+..++ |++|||+|++||++|||||||||||||+++|+|+++ ++|+|.++|+++..
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~----L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 85 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPA----LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLA 85 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCS----EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHH
T ss_pred CceEEEEEEEEEEeCCCCCce----eeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhh
Confidence 456799999999997665566 999999999999999999999999999999999999 99999999999874
Q ss_pred -CCccEEEEeccchhhhccCCcccccccc------cCCHHHHHHHHHHhc--------------------ccCCHHHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSR------GFNYNRVHEGLEELS--------------------SWMSEGVHHN 190 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~------~~~~~~~~~~l~~~~--------------------~~LSgGqkq~ 190 (273)
+++++++++|++.+ +..|+++|. ..+.+++.++++.++ .+||||||||
T Consensus 86 ~~r~~i~~v~Q~~~l-----~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQR 160 (253)
T d3b60a1 86 SLRNQVALVSQNVHL-----FNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQR 160 (253)
T ss_dssp HHHHTEEEECSSCCC-----CSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHH
T ss_pred hhhheEEEEeecccc-----CCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHH
Confidence 56789999999874 455788872 235566666554432 4699999998
Q ss_pred H---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhc
Q 024032 191 Q---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLF 253 (273)
Q Consensus 191 ~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~ 253 (273)
+ |+ +++|++||||||||+||+. +.++.+.+ ++|+|+| ..||+|++|++|+|++.|++++++
T Consensus 161 vaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl 238 (253)
T d3b60a1 161 IAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 238 (253)
T ss_dssp HHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 7 44 7899999999999999999 34555554 8899998 568999999999999999999998
Q ss_pred cCh
Q 024032 254 SAP 256 (273)
Q Consensus 254 ~~~ 256 (273)
++.
T Consensus 239 ~~~ 241 (253)
T d3b60a1 239 AQH 241 (253)
T ss_dssp HHT
T ss_pred hCC
Confidence 643
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=6.7e-47 Score=336.18 Aligned_cols=190 Identities=17% Similarity=0.227 Sum_probs=160.3
Q ss_pred CCCceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----
Q 024032 63 PDGLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---- 137 (273)
Q Consensus 63 ~~~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---- 137 (273)
..+.|+++||+|+|+.+..++ |+||||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.++..
T Consensus 13 ~~g~I~~~nvsf~Y~~~~~~v----L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 88 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNEAPI----LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG 88 (255)
T ss_dssp CSCCEEEEEEEECSCSSSCCS----EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHH
T ss_pred CCCEEEEEEEEEEeCCCCCcc----eeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHH
Confidence 356799999999998766667 999999999999999999999999999999999999 99999999999864
Q ss_pred -CCccEEEEeccchhhhccCCccccccccc-----CCHHHHHHHHHHhc--------------------ccCCHHHHHHH
Q 024032 138 -SSHTITMYMEEHNVMRSLQSGFCVYDSRG-----FNYNRVHEGLEELS--------------------SWMSEGVHHNQ 191 (273)
Q Consensus 138 -~~~~i~~v~q~~~~~~~~~~~~tv~en~~-----~~~~~~~~~l~~~~--------------------~~LSgGqkq~~ 191 (273)
+|+.++||+|++. +|..||+||.. ...+++.++++.++ ..||||||||.
T Consensus 89 ~lr~~i~~v~Q~~~-----lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi 163 (255)
T d2hyda1 89 SLRNQIGLVQQDNI-----LFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRL 163 (255)
T ss_dssp HHHHTEEEECSSCC-----CCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHH
T ss_pred Hhhheeeeeecccc-----CCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHH
Confidence 5688999999986 45669999942 35677777777654 46999999987
Q ss_pred ---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhcc
Q 024032 192 ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFS 254 (273)
Q Consensus 192 ---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~ 254 (273)
|+ +++|++||||||||+||+. +.++.+.+ ++|+|+| ..||+|++|++|+|++.|+++++++
T Consensus 164 ~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 164 SIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 44 7899999999999999999 23444443 7899888 5689999999999999999999997
Q ss_pred Chh-hHHHhC
Q 024032 255 APG-LRKCSK 263 (273)
Q Consensus 255 ~~~-l~~~~~ 263 (273)
.+. +.+.|.
T Consensus 242 ~~~~y~~l~~ 251 (255)
T d2hyda1 242 KQGAYEHLYS 251 (255)
T ss_dssp TTSHHHHHHT
T ss_pred CCcHHHHHHH
Confidence 654 445554
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.8e-46 Score=333.52 Aligned_cols=187 Identities=16% Similarity=0.185 Sum_probs=155.6
Q ss_pred CceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCC-----
Q 024032 65 GLNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNS----- 138 (273)
Q Consensus 65 ~~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~----- 138 (273)
.+++++|++++| |+..+ |+||||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++...
T Consensus 3 ~iL~v~nlsk~y--g~~~a----L~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~ 76 (254)
T d1g6ha_ 3 EILRTENIVKYF--GEFKA----LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 76 (254)
T ss_dssp EEEEEEEEEEEE--TTEEE----EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred ceEEEEEEEEEE--CCeEE----EcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHH
Confidence 378999999998 56777 999999999999999999999999999999999999 999999999998642
Q ss_pred -CccEEEEeccchhhhccCCcccccccccC---------------------C---HHHHHHHHHHhc---------ccCC
Q 024032 139 -SHTITMYMEEHNVMRSLQSGFCVYDSRGF---------------------N---YNRVHEGLEELS---------SWMS 184 (273)
Q Consensus 139 -~~~i~~v~q~~~~~~~~~~~~tv~en~~~---------------------~---~~~~~~~l~~~~---------~~LS 184 (273)
+..++++||++.+++. +||+||..+ . .+++.++++.++ .+||
T Consensus 77 ~~~gi~~v~Q~~~~~~~----ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 152 (254)
T d1g6ha_ 77 YHYGIVRTFQTPQPLKE----MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELS 152 (254)
T ss_dssp HHHTEEECCCCCGGGGG----SBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSC
T ss_pred HHhcCCccCCccccCCC----CeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCC
Confidence 2359999999987544 499988311 1 133455566554 7899
Q ss_pred HHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeee
Q 024032 185 EGVHHNQ---RC-LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPL 246 (273)
Q Consensus 185 gGqkq~~---r~-l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~ 246 (273)
||||||. |+ +.+|++|||||||+||||. +.+++++++ |+|||++ .+||||+||++|+|+++
T Consensus 153 gG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~-g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~ 231 (254)
T d1g6ha_ 153 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 231 (254)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred cHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEE
Confidence 9999987 44 7999999999999999998 446677665 9999999 67999999999999999
Q ss_pred cChhhh----ccChhhHHHh
Q 024032 247 DATKRL----FSAPGLRKCS 262 (273)
Q Consensus 247 g~~~~l----~~~~~l~~~~ 262 (273)
|+++|+ ++++.+.+.|
T Consensus 232 g~~~e~~~~~~~~~~v~~~y 251 (254)
T d1g6ha_ 232 GRGEEEIKNVLSDPKVVEIY 251 (254)
T ss_dssp EESHHHHHHHHHCHHHHHTT
T ss_pred ecHHHHhhcccCCHHHHHcc
Confidence 999985 4556666665
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=8.4e-46 Score=326.13 Aligned_cols=187 Identities=15% Similarity=0.149 Sum_probs=156.7
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC----CCc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN----SSH 140 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~----~~~ 140 (273)
.|+++|++++| |++++ |+|+||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++.. .++
T Consensus 2 aI~v~nl~k~y--g~~~v----l~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~ 75 (238)
T d1vpla_ 2 AVVVKDLRKRI--GKKEI----LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRK 75 (238)
T ss_dssp CEEEEEEEEEE--TTEEE----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHT
T ss_pred CEEEEeEEEEE--CCEEE----EccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHh
Confidence 58899999998 66778 999999999999999999999999999999999999 99999999999864 457
Q ss_pred cEEEEeccchhhhccCCcccccccc-------cCCHHH----HHHHHHHhc---------ccCCHHHHHHH---Hh-cCC
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSR-------GFNYNR----VHEGLEELS---------SWMSEGVHHNQ---RC-LRS 196 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~-------~~~~~~----~~~~l~~~~---------~~LSgGqkq~~---r~-l~~ 196 (273)
.+++++|+..++ ..+|+.||. +....+ ++++++.++ ..||||||||. |+ +++
T Consensus 76 ~i~~vpq~~~~~----~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~ 151 (238)
T d1vpla_ 76 LISYLPEEAGAY----RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVN 151 (238)
T ss_dssp TEEEECTTCCCC----TTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTC
T ss_pred hEeEeeeccccC----CCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcC
Confidence 899999998764 455999883 233333 444555544 78999999986 33 899
Q ss_pred CCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhcc---ChhhH
Q 024032 197 DDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFS---APGLR 259 (273)
Q Consensus 197 p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~---~~~l~ 259 (273)
|++|||||||+||||. +.++++.++ |+|||++ .+||||++|++|+|++.|+++++.. ...++
T Consensus 152 p~illLDEPt~gLD~~~~~~i~~~i~~~~~~-g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~~~~~~ 230 (238)
T d1vpla_ 152 PRLAILDEPTSGLDVLNAREVRKILKQASQE-GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIE 230 (238)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTCSSHH
T ss_pred CCEEEecCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhccCCchHH
Confidence 9999999999999999 446666666 9999999 5799999999999999999999964 34666
Q ss_pred HHhC
Q 024032 260 KCSK 263 (273)
Q Consensus 260 ~~~~ 263 (273)
++|.
T Consensus 231 ~~f~ 234 (238)
T d1vpla_ 231 EVFE 234 (238)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6663
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=5.3e-44 Score=313.97 Aligned_cols=176 Identities=20% Similarity=0.291 Sum_probs=145.8
Q ss_pred eEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCC---CCccE
Q 024032 67 NELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGN---SSHTI 142 (273)
Q Consensus 67 i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~---~~~~i 142 (273)
+++ ++.++| |+.. + ||||++. +|+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. .++++
T Consensus 3 l~v-~~~k~~--g~~~-----~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~i 72 (240)
T d2onka1 3 LKV-RAEKRL--GNFR-----L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGI 72 (240)
T ss_dssp EEE-EEEEEE--TTEE-----E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCC
T ss_pred EEE-EEEEEE--CCEE-----E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCc
Confidence 455 455666 4422 4 7999996 68999999999999999999999999 99999999999864 45789
Q ss_pred EEEeccchhhhccCCcccccccccC-----C----HHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cCCCCEE
Q 024032 143 TMYMEEHNVMRSLQSGFCVYDSRGF-----N----YNRVHEGLEELS---------SWMSEGVHHNQ---RC-LRSDDCA 200 (273)
Q Consensus 143 ~~v~q~~~~~~~~~~~~tv~en~~~-----~----~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~~p~iL 200 (273)
+|+||++.+++ .+||+||..+ + .+++.++++.++ .+||||||||+ |+ +++|++|
T Consensus 73 g~v~Q~~~l~~----~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~il 148 (240)
T d2onka1 73 GFVPQDYALFP----HLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLL 148 (240)
T ss_dssp BCCCSSCCCCT----TSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSB
T ss_pred eeeccchhhcc----cchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCce
Confidence 99999988654 4599999432 2 245667777776 78999999987 44 7899999
Q ss_pred EEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccCh
Q 024032 201 LMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAP 256 (273)
Q Consensus 201 lLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~ 256 (273)
||||||+||||. +.+++++++.|+|||++ .+||||++|++|++++.|+++++++.+
T Consensus 149 llDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~ 218 (240)
T d2onka1 149 LLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp EEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCC
Confidence 999999999999 44677776669999999 568999999999999999999998654
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-43 Score=310.43 Aligned_cols=184 Identities=16% Similarity=0.151 Sum_probs=152.0
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCccCccEEEECCeeCCCC-----Cc
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQTSSGNS-----SH 140 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g~~i~~~-----~~ 140 (273)
.++++|++++| . |++|||+|++||++||+||||||||||+++|+|+.+++|+|.++|+++..+ +.
T Consensus 3 il~~~dv~~~~------~----l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~ 72 (231)
T d1l7vc_ 3 VMQLQDVAEST------R----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLAL 72 (231)
T ss_dssp EEEEEEECCTT------T----SCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSCHHHHHH
T ss_pred EEEEECcccCc------e----ecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCceEEEECCEECCcCCHHHHHh
Confidence 57899997654 2 999999999999999999999999999999999877889999999988642 34
Q ss_pred cEEEEeccchhhhccCCcccccccc------cCCHHHHHHHHHHhc---------ccCCHHHHHHH---Hh-cC------
Q 024032 141 TITMYMEEHNVMRSLQSGFCVYDSR------GFNYNRVHEGLEELS---------SWMSEGVHHNQ---RC-LR------ 195 (273)
Q Consensus 141 ~i~~v~q~~~~~~~~~~~~tv~en~------~~~~~~~~~~l~~~~---------~~LSgGqkq~~---r~-l~------ 195 (273)
..++++|+... .+..+++++. ....+.+.++++.++ .+||||||||. |+ ++
T Consensus 73 ~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~ 148 (231)
T d1l7vc_ 73 HRAYLSQQQTP----PFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQAN 148 (231)
T ss_dssp HEEEECSCCCC----CSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTC
T ss_pred hceeeeccccC----CccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccC
Confidence 57888887653 4455676652 223555667777665 67999999987 33 33
Q ss_pred -CCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc--------eeCCEEEEEeCCeEeeecChhhhccChhhHH
Q 024032 196 -SDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS--------NIAEIYKALKAGDSKPLDATKRLFSAPGLRK 260 (273)
Q Consensus 196 -~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv--------~~ad~i~vl~~G~i~~~g~~~~l~~~~~l~~ 260 (273)
+|++|||||||+|||+. +.+++++++ |+|||++ .+|||+++|++|++++.|+++++++++.+.+
T Consensus 149 p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~-g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~~l~~ 227 (231)
T d1l7vc_ 149 PAGQLLLLDEPMNSLDVAQQSALDKILSALCQQ-GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQ 227 (231)
T ss_dssp TTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHT-TCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCChHHHH
Confidence 67999999999999999 446677666 9999999 6689999999999999999999999999999
Q ss_pred HhCC
Q 024032 261 CSKI 264 (273)
Q Consensus 261 ~~~~ 264 (273)
+||+
T Consensus 228 ~ygi 231 (231)
T d1l7vc_ 228 AYGM 231 (231)
T ss_dssp HHCC
T ss_pred hhCc
Confidence 9985
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.9e-40 Score=296.30 Aligned_cols=163 Identities=16% Similarity=0.158 Sum_probs=131.5
Q ss_pred CCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCC
Q 024032 79 GDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQS 157 (273)
Q Consensus 79 g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~ 157 (273)
.+++| |+||||+|++||++||+||||||||||+++|+|+++ ++|.|.++| +++|++|++.+ +
T Consensus 47 ~g~pv----L~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g--------~i~~v~Q~~~l-----~ 109 (281)
T d1r0wa_ 47 VGNPV----LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG--------RVSFCSQFSWI-----M 109 (281)
T ss_dssp TTCEE----EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS--------CEEEECSSCCC-----C
T ss_pred CCCeE----EeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC--------EEEEEeccccc-----c
Confidence 45678 999999999999999999999999999999999999 999999988 47999998874 4
Q ss_pred cccccccccC----CHHHHHHHHHHhc--------------------ccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCC
Q 024032 158 GFCVYDSRGF----NYNRVHEGLEELS--------------------SWMSEGVHHNQ---RC-LRSDDCALMKNDAEID 209 (273)
Q Consensus 158 ~~tv~en~~~----~~~~~~~~l~~~~--------------------~~LSgGqkq~~---r~-l~~p~iLlLDEPts~L 209 (273)
..||++|..+ +.....++++.+. .+||||||||+ |+ +++|+||||||||++|
T Consensus 110 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~L 189 (281)
T d1r0wa_ 110 PGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYL 189 (281)
T ss_dssp SEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSS
T ss_pred CceeeccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccC
Confidence 4599998432 3444444444332 35999999987 44 8999999999999999
Q ss_pred CHH--HHH-HHHHh--cCCcEEEEc-------eeCCEEEEEeCCeEeeecChhhhcc-Chhh
Q 024032 210 DLK--SSP-KYVLR--RVDFAMVVS-------NIAEIYKALKAGDSKPLDATKRLFS-APGL 258 (273)
Q Consensus 210 D~~--~~l-~~l~~--~~g~tiiiv-------~~ad~i~vl~~G~i~~~g~~~~l~~-~~~l 258 (273)
|+. ..+ +.+.. ..++|+|+| ..||||++|++|+|++.|+++++++ .+.+
T Consensus 190 D~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~ 251 (281)
T d1r0wa_ 190 DVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDF 251 (281)
T ss_dssp CHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhccCcHH
Confidence 997 223 33211 237888888 5599999999999999999999975 3443
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.6e-39 Score=278.97 Aligned_cols=164 Identities=18% Similarity=0.221 Sum_probs=134.8
Q ss_pred ceEEEEEEEEeecCCeeeeccceeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEE
Q 024032 66 LNELRHKFLSYRSGDFWIPIGGIQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITM 144 (273)
Q Consensus 66 ~i~~~~v~~~y~~g~~~v~~~~L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~ 144 (273)
.++++|++++|. +++ |+++||+|++||++||+||||||||||+|+|+|+++ ++|+|.++|+++...+.++++
T Consensus 2 ~lev~~ls~~y~---~~v----l~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~ 74 (200)
T d1sgwa_ 2 KLEIRDLSVGYD---KPV----LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 74 (200)
T ss_dssp EEEEEEEEEESS---SEE----EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEE
T ss_pred eEEEEEEEEEeC---CeE----EeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEE
Confidence 589999999993 467 999999999999999999999999999999999999 999999999999888888999
Q ss_pred EeccchhhhccCCcccccccc---------cCCHHHHHHHHHHhc--------ccCCHHHHHHH---Hh-cCCCCEEEEc
Q 024032 145 YMEEHNVMRSLQSGFCVYDSR---------GFNYNRVHEGLEELS--------SWMSEGVHHNQ---RC-LRSDDCALMK 203 (273)
Q Consensus 145 v~q~~~~~~~~~~~~tv~en~---------~~~~~~~~~~l~~~~--------~~LSgGqkq~~---r~-l~~p~iLlLD 203 (273)
++|+..+ +..+|+.++. ..+.+++.++++.+. .+||||||||. |+ +.+|+++|||
T Consensus 75 ~~~~~~~----~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllD 150 (200)
T d1sgwa_ 75 LPEEIIV----PRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLD 150 (200)
T ss_dssp ECSSCCC----CTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred EeecccC----CCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEc
Confidence 9988764 3345777762 235667777777765 68999999987 33 7999999999
Q ss_pred CcCCCCCHH------HHHHHHHhcCCcEEEEc----eeCCEEEEEeC
Q 024032 204 NDAEIDDLK------SSPKYVLRRVDFAMVVS----NIAEIYKALKA 240 (273)
Q Consensus 204 EPts~LD~~------~~l~~l~~~~g~tiiiv----~~ad~i~vl~~ 240 (273)
|||+|||+. +.+.++.++.+.+||.+ .+||++.+|++
T Consensus 151 EPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 151 DPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHK 197 (200)
T ss_dssp STTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGG
T ss_pred CcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechhhhcchhhheee
Confidence 999999998 33455555435555555 56899888753
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.63 E-value=6.7e-17 Score=131.74 Aligned_cols=139 Identities=11% Similarity=0.094 Sum_probs=84.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCeeCCCCCccEEEEeccchhhhccCCccccccc-----ccCCHHHHH
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTSSGNSSHTITMYMEEHNVMRSLQSGFCVYDS-----RGFNYNRVH 173 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~i~~~~~~i~~v~q~~~~~~~~~~~~tv~en-----~~~~~~~~~ 173 (273)
.++|+||||||||||+++|+|+++ +.|.+.+.+.......++.++...............+.... .+...+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQY-- 79 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHH--
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcch--
Confidence 479999999999999999999999 99999998876544333333322211110000100111111 1222221
Q ss_pred HHHHHhcccCCHHHHHHH---Hh-cCCCCEEEEcCcCCCCCHH----HHHHHHHhcCCcEEEEc-------eeCCEEEEE
Q 024032 174 EGLEELSSWMSEGVHHNQ---RC-LRSDDCALMKNDAEIDDLK----SSPKYVLRRVDFAMVVS-------NIAEIYKAL 238 (273)
Q Consensus 174 ~~l~~~~~~LSgGqkq~~---r~-l~~p~iLlLDEPts~LD~~----~~l~~l~~~~g~tiiiv-------~~ad~i~vl 238 (273)
..+|+|++++. ++ ..+|++|++|||....+.. +.+.++.+..+.++|++ ..++++..+
T Consensus 80 -------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~~~~~~~i~~~ 152 (178)
T d1ye8a1 80 -------FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp -------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred -------hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHHHHhhceEEEE
Confidence 13577887764 22 6899999999985543322 44555555557888888 346788888
Q ss_pred eCCeEeeec
Q 024032 239 KAGDSKPLD 247 (273)
Q Consensus 239 ~~G~i~~~g 247 (273)
.+|+++.-+
T Consensus 153 ~~~~i~~v~ 161 (178)
T d1ye8a1 153 PGAVLIELT 161 (178)
T ss_dssp TTCEEEECC
T ss_pred eCCEEEEEC
Confidence 999997654
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.02 E-value=3.3e-10 Score=102.59 Aligned_cols=56 Identities=9% Similarity=0.125 Sum_probs=37.7
Q ss_pred cCCHHHHHHHH----h----cCCCCEEEEcCcCCCCCHH------HHHHHHHhcCCcEEEEc-------eeCCEEEEE
Q 024032 182 WMSEGVHHNQR----C----LRSDDCALMKNDAEIDDLK------SSPKYVLRRVDFAMVVS-------NIAEIYKAL 238 (273)
Q Consensus 182 ~LSgGqkq~~r----~----l~~p~iLlLDEPts~LD~~------~~l~~l~~~~g~tiiiv-------~~ad~i~vl 238 (273)
.||||||.... + ..++++++||||+++||+. +.++++.. .+.-+|++ ..||+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeCCHHHHHhcccEEEE
Confidence 36999986431 1 4677899999999999998 22333332 24456666 457887654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.70 E-value=2e-08 Score=87.41 Aligned_cols=59 Identities=14% Similarity=0.096 Sum_probs=40.6
Q ss_pred ccCCHHHHHHH----Hh----cCCCCEEEEcCcCCCCCHHH------HHHHHHhcCCcEEEEc-------eeCCEEEE--
Q 024032 181 SWMSEGVHHNQ----RC----LRSDDCALMKNDAEIDDLKS------SPKYVLRRVDFAMVVS-------NIAEIYKA-- 237 (273)
Q Consensus 181 ~~LSgGqkq~~----r~----l~~p~iLlLDEPts~LD~~~------~l~~l~~~~g~tiiiv-------~~ad~i~v-- 237 (273)
..+|+|+|+.. .+ ...+.++++|||-++|+|.. .++...+ +.-+|++ ..+|+++.
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTHsp~~~~~~d~~~~v~ 295 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHNKIVMEAADLLHGVT 295 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCCTTGGGGCSEEEEEE
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHHHhcccEEEEE
Confidence 45899998743 11 46788999999999999993 2344433 5667777 44688755
Q ss_pred EeCC
Q 024032 238 LKAG 241 (273)
Q Consensus 238 l~~G 241 (273)
+++|
T Consensus 296 ~~~g 299 (308)
T d1e69a_ 296 MVNG 299 (308)
T ss_dssp ESSS
T ss_pred EeCC
Confidence 5555
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=8.1e-06 Score=69.25 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=24.4
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
=++++++ +.+.++.|-|||.+||||+||.++=
T Consensus 32 pNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l 63 (234)
T d1wb9a2 32 ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTAL 63 (234)
T ss_dssp CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEC-CCceEEEEeccCchhhHHHHHHHHH
Confidence 3444444 2346899999999999999999864
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.98 E-value=3.5e-07 Score=72.84 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=29.2
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
+++.+|++.+| +++|+|||||||||++.+|.-.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 77888888776 9999999999999999999744
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.93 E-value=2.2e-05 Score=66.09 Aligned_cols=35 Identities=6% Similarity=0.003 Sum_probs=26.0
Q ss_pred cCCCCEEEEcCcCCCCCHH-------HHHHHHHhcCCcEEEEc
Q 024032 194 LRSDDCALMKNDAEIDDLK-------SSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 194 l~~p~iLlLDEPts~LD~~-------~~l~~l~~~~g~tiiiv 229 (273)
+.+..++|+||+..|-++. ..++.+.+. +..++++
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~-~~~~i~t 153 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHER-RAYTLFA 153 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEE
T ss_pred CCCCcEEeecccccCcchhhhcchHHHHHHHHhhc-CcceEEe
Confidence 4566799999999999998 345666665 5555665
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.88 E-value=1.9e-06 Score=67.47 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+++|+|++|||||||++.|...+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999987655
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.85 E-value=3.6e-06 Score=71.23 Aligned_cols=33 Identities=36% Similarity=0.368 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEE
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL 129 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~ 129 (273)
+|.+++++|+||+|||||+|.|.+-.. ..|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 589999999999999999999999777 778775
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.81 E-value=4.2e-06 Score=67.40 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
|.++.|+||||||||||++.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999999976554
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.70 E-value=9.3e-06 Score=63.71 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.|.++.|.||+||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999998653
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.69 E-value=3.8e-06 Score=71.31 Aligned_cols=33 Identities=36% Similarity=0.430 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEE
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVL 129 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~ 129 (273)
+|.+++++|+||+|||||+|.|.|-.. ..|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 578899999999999999999999777 788886
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.64 E-value=1.3e-05 Score=63.36 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+++|+|++|||||||++.|...+.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999998887665
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.62 E-value=1.5e-05 Score=62.34 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=24.9
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++|-++.|+|++||||||+.+.|+-.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5788999999999999999999997654
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=1.4e-05 Score=62.48 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=23.8
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+++.++.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999998754
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=1.1e-05 Score=63.25 Aligned_cols=32 Identities=28% Similarity=0.289 Sum_probs=26.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEEEEC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFA 131 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~ 131 (273)
.+.|.||+|+|||||++.++..+. ..+.+.+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~ 35 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGF 35 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 478999999999999999999887 65555443
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.56 E-value=1.8e-05 Score=61.91 Aligned_cols=23 Identities=43% Similarity=0.600 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|.||+|||||||.+.|+..+
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 67999999999999999998654
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=2.1e-05 Score=65.15 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+|.++.|+||||||||||++.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 588999999999999999998876544
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.50 E-value=2.5e-05 Score=61.05 Aligned_cols=26 Identities=35% Similarity=0.653 Sum_probs=22.9
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
++|-.++|.||+||||||+.+.|+--
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 56778999999999999999999853
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.45 E-value=3.2e-05 Score=60.24 Aligned_cols=26 Identities=42% Similarity=0.503 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
..++.|.||+||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45889999999999999999998654
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.44 E-value=2e-05 Score=63.59 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|||||||+|.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 4999999999999999999985
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.41 E-value=3.3e-05 Score=60.61 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=22.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+++|.|++||||||+.+.|+-.+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999987665
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.40 E-value=3.9e-05 Score=58.89 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=18.4
Q ss_pred cEEEEEcCCCChHHHHHHHHh
Q 024032 99 ITILLMGFSGSGKSSLVNLMY 119 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~ 119 (273)
+++.|.||+|||||||.+.|.
T Consensus 3 klIii~G~pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFI 23 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999764
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=3.8e-05 Score=58.68 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+.|+||+||||||+.+.|+-.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999999864
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.37 E-value=3.9e-05 Score=59.38 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++.|.||+||||||+.+.|+..+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 368899999999999999998644
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.36 E-value=4.2e-05 Score=60.82 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++||-||+|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999987655
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=3.4e-05 Score=61.41 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+|-++.|+|++||||||+.+.|+-.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999987653
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.30 E-value=5.1e-05 Score=58.96 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+||+||||||+.+.|+--
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999753
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.25 E-value=5.5e-05 Score=59.87 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||+|.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999984
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.24 E-value=6.5e-05 Score=60.58 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHhhCc
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~ 122 (273)
++|+||||||||||++.|..-.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999987543
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.23 E-value=4.3e-05 Score=60.94 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=19.4
Q ss_pred EEEEcCCCChHHHHHHHHhhC
Q 024032 101 ILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl 121 (273)
+||+|++++|||||+|.|+|-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=97.23 E-value=7.2e-05 Score=61.62 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+++|+||.|||||||++.|.....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 689999999999999999986443
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=8.3e-05 Score=58.54 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
+++|+|.+|+|||||+|.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.19 E-value=8.6e-05 Score=58.42 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.|+|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999984
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.18 E-value=9.5e-05 Score=59.39 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
+..++.|+||.||||||+.+.|+--
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999854
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.17 E-value=9.4e-05 Score=59.55 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.1
Q ss_pred cEEEEEcCCCChHHHHHHHHhhC
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl 121 (273)
..+.|+||||+|||||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999988753
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.15 E-value=0.0001 Score=56.17 Aligned_cols=22 Identities=23% Similarity=0.661 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||++.+.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.15 E-value=8.2e-05 Score=58.52 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++.|.|++||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999998766
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=97.15 E-value=0.0001 Score=58.40 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
+++|+|.+|+|||||+|.|.|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999985
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.14 E-value=9.4e-05 Score=59.91 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=18.6
Q ss_pred EEEEcCCCChHHHHHHHHhhC
Q 024032 101 ILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl 121 (273)
++|+||||||||||++.|.-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999998654
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.14 E-value=0.0001 Score=59.37 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|||||||+|.|.|-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999999874
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=0.00012 Score=56.67 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhhC
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl 121 (273)
=.++|+|+.|+|||||+|.|.|.
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36799999999999999999985
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=97.07 E-value=0.00014 Score=55.63 Aligned_cols=21 Identities=24% Similarity=0.562 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|++|+|||||++.+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999999876
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=97.07 E-value=7.9e-05 Score=59.16 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHhhC
Q 024032 101 ILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl 121 (273)
+||+|++|+|||||+|.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999875
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.07 E-value=0.00013 Score=59.53 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
++||-|++|||||||.+.|+-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999997654
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.06 E-value=0.00012 Score=58.92 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+-.++.|+||.||||||+.+.|+--+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44579999999999999999998644
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=97.05 E-value=0.00015 Score=55.79 Aligned_cols=22 Identities=27% Similarity=0.619 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999874
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.05 E-value=0.00015 Score=57.52 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+||+|+.|+|||||+|.|.|-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5799999999999999999874
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.05 E-value=0.00012 Score=57.27 Aligned_cols=22 Identities=18% Similarity=0.622 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|||++|||||||++.+.+-
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999874
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.05 E-value=0.00017 Score=57.72 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.2
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
|+|-.+.|+||.||||||+.+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 4677888999999999999999993
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=0.00019 Score=56.80 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=23.7
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
+++|+++.|.||+|+|||||..-++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999877764
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.01 E-value=0.00014 Score=58.67 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.8
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
++++.++.|+||.||||||+.+.|+--
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999854
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.98 E-value=0.00017 Score=56.69 Aligned_cols=21 Identities=43% Similarity=0.727 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHhhC
Q 024032 101 ILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl 121 (273)
+.|+|++||||||+.+.|+-.
T Consensus 3 I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999864
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.92 E-value=0.00022 Score=57.04 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
++.|+||.||||||..+.|+--
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999853
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.91 E-value=0.00019 Score=56.65 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+.|+|++||||||+-+.|+-.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999853
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=9.9e-05 Score=57.93 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|++++|||||+|.|.|.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.87 E-value=0.00019 Score=57.40 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
++.|+||.||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999997543
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.87 E-value=0.00026 Score=56.78 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+++++|.+|||||||.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999997554
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.85 E-value=0.00027 Score=55.64 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+.|+||.||||||+.+.|+--
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999754
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.83 E-value=0.00026 Score=55.49 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHhhCc
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+.|+|++||||||+-++|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998643
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.83 E-value=0.00032 Score=58.03 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++.+++++||+|+||||.+-=|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567999999999999998877776544
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.82 E-value=0.00028 Score=54.78 Aligned_cols=22 Identities=18% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999874
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.80 E-value=0.00034 Score=55.78 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=21.2
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHh
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMY 119 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~ 119 (273)
++-+++.++|++||||||+.+-++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 556799999999999999998775
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.00031 Score=56.77 Aligned_cols=30 Identities=33% Similarity=0.438 Sum_probs=25.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC---cc-CccEEE
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV---LS-RSGLVL 129 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl---~~-~~G~I~ 129 (273)
+++|.||.||||||+-+.|+-- .. ++|.++
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdLl 38 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY 38 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHH
Confidence 8899999999999999999854 34 577774
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.79 E-value=0.00027 Score=60.03 Aligned_cols=23 Identities=52% Similarity=0.609 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|.+|+|||||+|.|.|-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46999999999999999999854
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.77 E-value=0.00027 Score=62.28 Aligned_cols=33 Identities=15% Similarity=0.389 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEE
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLF 130 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i 130 (273)
+.-+.|.||.|||||||++.|.+.++ ..=-|.+
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred CCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 44589999999999999999999988 5544555
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.77 E-value=9.5e-05 Score=57.18 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||+|.|.|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999984
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.74 E-value=0.00036 Score=55.36 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.+.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998643
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.73 E-value=0.00036 Score=56.73 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=24.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC---cc-CccEEE
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV---LS-RSGLVL 129 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl---~~-~~G~I~ 129 (273)
+++|-||+||||||+.+.|+-- .. ++|.++
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~ 38 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY 38 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHH
Confidence 5789999999999999999864 33 566654
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.70 E-value=0.00037 Score=55.68 Aligned_cols=21 Identities=43% Similarity=0.540 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
++||.|+.||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999864
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.70 E-value=0.00033 Score=58.31 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=24.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhCccCccEEEECC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLSRSGLVLFAQ 132 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~~~G~I~i~g 132 (273)
.+.|.||+|||||||.+.|++.+. .+-+.++.
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~-~~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ-GNVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT-TCCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh-cceEEEec
Confidence 578999999999999999998554 22444544
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.68 E-value=0.00035 Score=55.83 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
-+++|-|+.||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999998654
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.66 E-value=0.00041 Score=55.16 Aligned_cols=22 Identities=18% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEcCCCChHHHHHHHHhhCc
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+||||+..||||||+|.|.+.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 7999999999999999999753
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.66 E-value=0.00041 Score=56.06 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|+.|+|||||++.+.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999873
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.66 E-value=0.00045 Score=53.87 Aligned_cols=22 Identities=14% Similarity=0.478 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+|..|||||||++.|.+-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.0003 Score=57.72 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998664
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.00047 Score=54.47 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+.|+||.||||||..+.|+--
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999853
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.00045 Score=60.94 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++||.||.|||||||++.|...+.
T Consensus 56 ~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 56 RLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999988766
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.62 E-value=0.00053 Score=56.31 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=25.0
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++|-+++|-|+-||||||+.+.|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999999987665
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.00059 Score=55.43 Aligned_cols=27 Identities=26% Similarity=0.462 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+|.+++|-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999997665
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.00057 Score=56.70 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
-.+++++||+|+||||.+-=|+-.+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999998877776554
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.56 E-value=0.00059 Score=53.94 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.+.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999997543
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.53 E-value=0.00063 Score=52.87 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 468999999999999998865
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.53 E-value=0.00064 Score=56.44 Aligned_cols=28 Identities=21% Similarity=0.530 Sum_probs=21.2
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+.-+++++||+|+||||.+-=|+-.+.
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~ 36 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV 36 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455899999999999998766664433
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.53 E-value=0.0006 Score=61.60 Aligned_cols=29 Identities=31% Similarity=0.524 Sum_probs=23.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEE
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLV 128 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I 128 (273)
-+||+|.+|+|||||+|.|.|.-. ..|.+
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~ 87 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEGAA 87 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCccC
Confidence 369999999999999999999754 44433
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.51 E-value=0.00087 Score=55.07 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=26.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCccCccEE
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLSRSGLV 128 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~~~G~I 128 (273)
+|.+++|=|+-||||||++++|.-.+...|.+
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~~ 33 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKL 33 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTTSEEE
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHhCCEE
Confidence 68999999999999999999998765544443
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.47 E-value=0.00074 Score=52.80 Aligned_cols=20 Identities=35% Similarity=0.652 Sum_probs=18.5
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 024032 101 ILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~g 120 (273)
++|+|+.|+|||||++.+.+
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998875
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.43 E-value=0.00085 Score=55.11 Aligned_cols=41 Identities=29% Similarity=0.259 Sum_probs=32.1
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc---CccEEEECCeeCC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS---RSGLVLFAQTSSG 136 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~---~~G~I~i~g~~i~ 136 (273)
++|-++-|.|.+|||||||.+.|.-.+. .--.+.++|..++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence 5778999999999999999999986443 2345778887664
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.42 E-value=0.0009 Score=55.20 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
...++.++||+|+||||.+-=|+-.+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345889999999999998877776554
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.40 E-value=0.00084 Score=52.46 Aligned_cols=20 Identities=35% Similarity=0.476 Sum_probs=18.4
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 024032 101 ILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~g 120 (273)
++++|+.|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 79999999999999998765
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.39 E-value=0.00086 Score=53.11 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+.|+||.||||||+.+.|+--
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999854
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=96.39 E-value=0.00071 Score=52.90 Aligned_cols=21 Identities=38% Similarity=0.727 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++++|+.|+|||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999865
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.39 E-value=0.00086 Score=54.43 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.9
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHh
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMY 119 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~ 119 (273)
+++|.++-|.||+|||||||..-++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999999987665
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.00083 Score=52.27 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|++|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999998875
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.36 E-value=0.00091 Score=53.80 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.++|+||.||||||+.+.|+--
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999853
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.35 E-value=0.00089 Score=55.44 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=17.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
...+++++||+|+||||.+-=|+-.+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445899999999999998766665444
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.34 E-value=0.00087 Score=54.47 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 024032 100 TILLMGFSGSGKSSLVNLMY 119 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~ 119 (273)
++||.|+.||||||+.+++.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999886
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.00098 Score=52.38 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 379999999999999998765
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.00078 Score=58.94 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++||-|++||||||+.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 889999999999999999988764
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.31 E-value=0.0011 Score=54.81 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+.|.||+|+||||++++|+..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 568999999999999999997543
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.31 E-value=0.001 Score=54.80 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHhh
Q 024032 97 PVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
.+.++.|.||.|+|||||++.++.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 455789999999999999998764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.28 E-value=0.0011 Score=51.46 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987764
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.25 E-value=0.001 Score=54.56 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.7
Q ss_pred EEEEcCCCChHHHHHHHHhhCc
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+-|.||+|+|||||+++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6799999999999999999754
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.0012 Score=51.22 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 579999999999999999764
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.18 E-value=0.0014 Score=52.99 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=23.4
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
+++|+++.|.|++|+|||||.--++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999877653
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.18 E-value=0.0014 Score=52.73 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.6
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHH
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLM 118 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll 118 (273)
+++|+++.|.|++|+|||||..-+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 899999999999999999997533
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.18 E-value=0.0013 Score=51.10 Aligned_cols=21 Identities=48% Similarity=0.615 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++++|.+|+|||||++.+.+
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999998775
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.17 E-value=0.0014 Score=51.01 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|..|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 468999999999999998765
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.15 E-value=0.0014 Score=51.86 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 378999999999999998875
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.13 E-value=0.00095 Score=53.57 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=22.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhCccCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLSRSG 126 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~~~G 126 (273)
+++|-|+-||||||+++.|...+...|
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~~~g 28 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFRAAG 28 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 578999999999999999997665333
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.13 E-value=0.0014 Score=51.28 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|++|+|||||++.+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 368999999999999998765
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.11 E-value=0.0013 Score=54.02 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHhhCcc
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+-+.||+|+||||+.++|+..+.
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHhccC
Confidence 57899999999999999998766
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.0015 Score=50.64 Aligned_cols=21 Identities=29% Similarity=0.551 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|..|+|||||++.+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 479999999999999998875
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.10 E-value=0.0016 Score=53.14 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=23.5
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
+++|.++.|.||+|||||||..-++.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999999877763
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.10 E-value=0.0014 Score=54.08 Aligned_cols=22 Identities=18% Similarity=0.446 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
++||+|...||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5899999999999999999875
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.0015 Score=51.04 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.0016 Score=50.80 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|+.|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 36899999999999999998753
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.09 E-value=0.0016 Score=53.30 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.1
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHh
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMY 119 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~ 119 (273)
+++|.++.|.||+|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999999976443
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.0016 Score=53.00 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
++||.|+.||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 789999999999999999864
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.07 E-value=0.0015 Score=50.89 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999997764
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.07 E-value=0.0014 Score=53.50 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEEcCCCChHHHHHHHHhhCc
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+.|.||+|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 5789999999999999999753
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.06 E-value=0.0021 Score=52.77 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+.|.||.|+||||+++.|+..+.
T Consensus 45 ~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 45 RATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHh
Confidence 678999999999999999998776
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.04 E-value=0.0017 Score=51.27 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998775
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.03 E-value=0.0018 Score=54.42 Aligned_cols=33 Identities=24% Similarity=0.199 Sum_probs=27.7
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
|+++-.=+.+|+++.|.|++|+|||||+.-++-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 666554589999999999999999999877763
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.02 E-value=0.0019 Score=52.93 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.4
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
+++|.++.|.||+|+|||||..-++-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999876654
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=96.01 E-value=0.001 Score=52.49 Aligned_cols=21 Identities=29% Similarity=0.687 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998764
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.01 E-value=0.0018 Score=50.24 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999988775
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.00 E-value=0.0019 Score=49.87 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=18.2
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 024032 101 ILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~g 120 (273)
++|+|..|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998864
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0017 Score=50.08 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0021 Score=50.23 Aligned_cols=20 Identities=45% Similarity=0.707 Sum_probs=17.9
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 024032 101 ILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~g 120 (273)
++|+|++|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.98 E-value=0.0016 Score=53.55 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHhhCcc
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+-+.||.|+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999998544
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.97 E-value=0.0016 Score=56.46 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.-+.++||+|+|||+|.|+|+..+
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhcc
Confidence 345689999999999999999854
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.92 E-value=0.0021 Score=49.87 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|..|+|||||++.+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.002 Score=50.49 Aligned_cols=21 Identities=19% Similarity=0.388 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.+.|+|.+|+|||||++.+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 468999999999999988775
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.88 E-value=0.0022 Score=57.73 Aligned_cols=28 Identities=36% Similarity=0.394 Sum_probs=24.2
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+..++.|.||.||||||++..+...+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 3556899999999999999999988654
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.87 E-value=0.0022 Score=50.20 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++|+|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 46899999999999999998753
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.85 E-value=0.0023 Score=50.25 Aligned_cols=21 Identities=48% Similarity=0.618 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998876
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.83 E-value=0.00099 Score=57.72 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=19.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++||-|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999987665
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.0025 Score=49.46 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|.+|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999998764
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.80 E-value=0.0043 Score=49.81 Aligned_cols=31 Identities=29% Similarity=0.289 Sum_probs=25.0
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMY 119 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~ 119 (273)
++..-+.+ .|.-+.|.||||+|||||.-.+.
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 56555666 78889999999999999986664
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.80 E-value=0.0023 Score=51.10 Aligned_cols=20 Identities=45% Similarity=0.625 Sum_probs=18.3
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 024032 101 ILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~g 120 (273)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 79999999999999998764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.78 E-value=0.0024 Score=49.77 Aligned_cols=20 Identities=35% Similarity=0.677 Sum_probs=18.4
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 024032 101 ILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~g 120 (273)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 79999999999999998764
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.0026 Score=49.77 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|..|+|||||++.+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.0028 Score=49.35 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|||+.|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.73 E-value=0.0027 Score=50.07 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|.+|+|||||++.+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999988765
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.72 E-value=0.0032 Score=49.70 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=25.8
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
..++|.+++|-|+=|||||||.|.++.-+.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 347899999999999999999999986543
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.71 E-value=0.0025 Score=55.85 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++||.||.|||||||+..|...+.
T Consensus 53 ~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 53 RVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEeeeCCCCCCHHHHHHHHHHHHh
Confidence 789999999999999999987543
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.71 E-value=0.0028 Score=49.17 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999997665
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=95.70 E-value=0.0017 Score=50.70 Aligned_cols=21 Identities=24% Similarity=0.581 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.+.|+|++|+|||||++.+.+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998864
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.63 E-value=0.0034 Score=53.12 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
-+.|.||+|+|||+|.+.|+..+
T Consensus 47 ~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 47 GVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEeeCCCCCCccHHHHHHHHHc
Confidence 45799999999999999999754
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.62 E-value=0.0032 Score=48.91 Aligned_cols=21 Identities=43% Similarity=0.523 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++++|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 468999999999999998874
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.59 E-value=0.0019 Score=50.50 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=17.7
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++++|+.|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 479999999999999987653
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.57 E-value=0.0027 Score=54.48 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 389999999999999999999854
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.55 E-value=0.0036 Score=48.78 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.+.++|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 468999999999999998775
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.0037 Score=48.58 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.4
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 379999999999999997654
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=95.51 E-value=0.0032 Score=54.38 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=27.8
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+.|-+|+..+|+|++|+|||||+..|+.-..
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 5788999999999999999999999987554
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.49 E-value=0.0033 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.1
Q ss_pred EEEEcCCCChHHHHHHHHhhCc
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+-|.||+|+||||+.++++..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 4688999999999999998643
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=95.48 E-value=0.0038 Score=48.55 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998764
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.48 E-value=0.0036 Score=49.41 Aligned_cols=20 Identities=45% Similarity=0.667 Sum_probs=18.2
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 024032 100 TILLMGFSGSGKSSLVNLMY 119 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~ 119 (273)
.+.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999984
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.47 E-value=0.0033 Score=52.71 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
-+.|.||.|+|||+|.+.|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 3578999999999999999974
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.46 E-value=0.0023 Score=49.99 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=8.9
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987664
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.42 E-value=0.0029 Score=51.93 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEcCCCChHHHHHHHHhhCc
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+.|.||.|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 5799999999999999998754
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.42 E-value=0.0038 Score=53.81 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
++||-|+.|||||||.+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 88999999999999998776443
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.39 E-value=0.0044 Score=48.87 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++++|..|+|||||++.+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 579999999999999997765
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.38 E-value=0.0041 Score=49.15 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 479999999999999988764
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.36 E-value=0.0045 Score=47.88 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|..|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 468999999999999998764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=95.28 E-value=0.008 Score=48.09 Aligned_cols=31 Identities=26% Similarity=0.217 Sum_probs=23.0
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMY 119 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~ 119 (273)
|+..-+. -.|.-+.|.|+||+|||||.-.+.
T Consensus 5 lH~~~v~-~~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 5 MHGVLVD-IYGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEE-ETTEEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHH
Confidence 4443443 356788999999999999887655
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.27 E-value=0.0043 Score=52.51 Aligned_cols=24 Identities=25% Similarity=0.366 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.-+-|.||+|+|||+|.+.+++.+
T Consensus 42 ~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 42 KGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcchhHHHHHHHHh
Confidence 346799999999999999999853
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.27 E-value=0.0042 Score=50.40 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHhhC
Q 024032 101 ILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl 121 (273)
+-|.||.|+||||++++++..
T Consensus 38 lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHH
Confidence 568999999999999999974
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.25 E-value=0.0059 Score=51.85 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=31.6
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccE-EEECCee
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGL-VLFAQTS 134 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~-I~i~g~~ 134 (273)
=+++|.++-|.||+|+|||||.-.++.... ..|. ++++.+.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence 478999999999999999999877776555 4343 5666554
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.22 E-value=0.0049 Score=48.90 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.3
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|+.|+|||||++.+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987764
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.19 E-value=0.0047 Score=51.86 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHhhC
Q 024032 101 ILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl 121 (273)
+.+.||.|+|||+|.+.|+..
T Consensus 45 iLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHH
Confidence 579999999999999999974
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.17 E-value=0.0052 Score=48.39 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=17.9
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.++|+|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 468999999999999986654
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.16 E-value=0.0051 Score=50.32 Aligned_cols=20 Identities=45% Similarity=0.682 Sum_probs=18.0
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 024032 100 TILLMGFSGSGKSSLVNLMY 119 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~ 119 (273)
.+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 56899999999999999875
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.14 E-value=0.006 Score=50.76 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=21.8
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhh
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
.+|+++.|.|++|+|||||+--|+-
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4599999999999999999977663
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.12 E-value=0.0032 Score=51.97 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++.|.||.|+||||+++.++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 455679999999999999997653
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.06 E-value=0.005 Score=53.03 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
-+||||..-+|||||+|+|+|.-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred cEeEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999998853
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.00 E-value=0.0049 Score=56.22 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
-+.+|||+|+|||-|.+.|++++.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 358999999999999999999764
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.95 E-value=0.0063 Score=48.57 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHhhCc
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 6999999999999999999864
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.94 E-value=0.0069 Score=50.89 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHhhC
Q 024032 101 ILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl 121 (273)
+-|.||.|+|||+|++.++..
T Consensus 41 iLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred eEEecCCCCCchHHHHHHHHH
Confidence 578899999999999999974
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.93 E-value=0.0068 Score=51.75 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.+++||.-.||||||+|+|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.86 E-value=0.011 Score=46.84 Aligned_cols=31 Identities=23% Similarity=0.165 Sum_probs=22.8
Q ss_pred eeeeeeEEcCCcEEEEEcCCCChHHHHHHHHh
Q 024032 88 IQKGGMDIPPVITILLMGFSGSGKSSLVNLMY 119 (273)
Q Consensus 88 L~~is~~i~~Ge~~aivGpnGsGKSTLl~ll~ 119 (273)
++.. +-.-.|.=+.|.|+||+|||||.-.+.
T Consensus 6 ~H~~-~v~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 6 LHGV-LVDVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EESE-EEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEE-EEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence 4443 334467789999999999999885544
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.82 E-value=0.0071 Score=51.30 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHhhCc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
.++++|.-.||||||+|+|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999963
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.82 E-value=0.0094 Score=50.77 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=31.4
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccE-EEECCee
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGL-VLFAQTS 134 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~-I~i~g~~ 134 (273)
-++.|.++-|.||+|+|||||.-.++.... ..|. |+||.+.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence 578999999999999999999766665555 5555 4556554
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.81 E-value=0.0089 Score=50.88 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=32.1
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCcc-Ccc-EEEECCee
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSG-LVLFAQTS 134 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G-~I~i~g~~ 134 (273)
=++.|.++-|.||+|||||||.-.++.... ..| .++||.+.
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~ 95 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 95 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc
Confidence 468999999999999999999988887665 444 45565553
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.78 E-value=0.0078 Score=49.25 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.2
Q ss_pred cEEEEEcCCCChHHHHHHHHh
Q 024032 99 ITILLMGFSGSGKSSLVNLMY 119 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~ 119 (273)
.++||.|+-||||||..+.|.
T Consensus 2 ~iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 378999999999999999985
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.74 E-value=0.012 Score=45.82 Aligned_cols=29 Identities=38% Similarity=0.619 Sum_probs=22.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc-CccEE
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS-RSGLV 128 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~-~~G~I 128 (273)
.+.|||..|+|||||++-+..-.. +.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 478999999999999998865433 55543
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.68 E-value=0.0064 Score=51.80 Aligned_cols=29 Identities=38% Similarity=0.651 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHh---hCccCccEE
Q 024032 100 TILLMGFSGSGKSSLVNLMY---SVLSRSGLV 128 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~---gl~~~~G~I 128 (273)
-+||+|+.|+|||||+..|. |.....|.+
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v 35 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRV 35 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccc
Confidence 46999999999999999984 433344554
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.59 E-value=0.0087 Score=51.22 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+||||...+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999975
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.0097 Score=51.55 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.0
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
..+.++||+|+|||.|.+.|+..+.
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCcchhHHHHHHHHhhcc
Confidence 3678999999999999999998654
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.53 E-value=0.0094 Score=48.58 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=22.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCccCc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLSRS 125 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~~~ 125 (273)
.+++|=|+-||||||+++.|.-.+...
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~~ 29 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence 378999999999999999998755433
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.46 E-value=0.0091 Score=52.95 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=27.1
Q ss_pred EEcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 94 DIPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 94 ~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.++++.++.+.||.|+||||+.+.|++++.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 458888999999999999999999998765
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.41 E-value=0.011 Score=46.26 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=18.7
Q ss_pred EEEEEcCCCChHHHHHHHHhh
Q 024032 100 TILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~g 120 (273)
.+.|+|..|+|||||++-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999998864
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=94.25 E-value=0.01 Score=52.66 Aligned_cols=32 Identities=31% Similarity=0.545 Sum_probs=22.9
Q ss_pred EEEEEcCCCChHHHHHHHH-hhCcc-CccEEEEC
Q 024032 100 TILLMGFSGSGKSSLVNLM-YSVLS-RSGLVLFA 131 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll-~gl~~-~~G~I~i~ 131 (273)
-+.|+|++|||||++++.+ ..++. ..+-|.+|
T Consensus 52 H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD 85 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 85 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 5799999999999999754 44444 44445454
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.21 E-value=0.012 Score=50.17 Aligned_cols=126 Identities=14% Similarity=0.103 Sum_probs=61.2
Q ss_pred EEEEEcCCCChHHHHHHHHh---hCccCccEEEECCeeCC-----CCCccEEEEeccchhhhccCCcccccccccCC--H
Q 024032 100 TILLMGFSGSGKSSLVNLMY---SVLSRSGLVLFAQTSSG-----NSSHTITMYMEEHNVMRSLQSGFCVYDSRGFN--Y 169 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~---gl~~~~G~I~i~g~~i~-----~~~~~i~~v~q~~~~~~~~~~~~tv~en~~~~--~ 169 (273)
-+||+|..|||||||+..|. |.....|++. +|..+. +..+.+..-. ....+.+.-..+++.|.++.. .
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~-~~~~~~D~~~~E~~r~~si~~-~~~~~~~~~~~~n~iDtPG~~dF~ 85 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH-EGAATMDFMEQERERGITITA-AVTTCFWKDHRINIIDAPGHVDFT 85 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC--------------------CCCCCCC-SEEEEEETTEEEEEECCCSSSSCS
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccccccee-cCceEEeccHHHHhcCCcccc-ceeeeccCCeEEEEecCCchhhhH
Confidence 46999999999999999984 4444455553 221111 1111111000 000000001123556655431 1
Q ss_pred HHHHHHHHHhc------ccCCHHHHHHHH----h--cCCCCEEE---EcCcCCCCCHHHHHHHHHhcCCcEEEEc
Q 024032 170 NRVHEGLEELS------SWMSEGVHHNQR----C--LRSDDCAL---MKNDAEIDDLKSSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 170 ~~~~~~l~~~~------~~LSgGqkq~~r----~--l~~p~iLl---LDEPts~LD~~~~l~~l~~~~g~tiiiv 229 (273)
.++..++..+. ..-+|=|-|-.+ + ..-|.+++ ||-| +-|+...+.++.++.+..++-+
T Consensus 86 ~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~--~ad~~~~l~ei~~~l~~~~vp~ 158 (276)
T d2bv3a2 86 IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKT--GADLWLVIRTMQERLGARPVVM 158 (276)
T ss_dssp TTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTST--TCCHHHHHHHHHHTTCCCEEEC
T ss_pred HHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEeccccc--ccccchhHHHHHHHhCCCeEEE
Confidence 23344454443 333444444221 1 45577776 5775 5677888888888888777766
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.13 E-value=0.013 Score=49.52 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
.+||||-.-+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 5799999999999999999964
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.11 E-value=0.016 Score=49.50 Aligned_cols=30 Identities=23% Similarity=0.135 Sum_probs=26.0
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHhhC
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl 121 (273)
=+.+-+|+..+|+|++|+|||||+.-|+.-
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 367899999999999999999997777643
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.99 E-value=0.014 Score=47.31 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
-+||+|.-++|||||++.|...
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 3799999999999999999654
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.94 E-value=0.0065 Score=52.58 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
-+-|+||.|+|||||++.++++++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCC
Confidence 468999999999999999999886
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.59 E-value=0.02 Score=48.31 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHhh
Q 024032 98 VITILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~g 120 (273)
..+++|.|.-|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998864
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.48 E-value=0.014 Score=47.81 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhC
Q 024032 100 TILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl 121 (273)
++.|-|.=|||||||++-+..-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6788999999999999988763
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.40 E-value=0.022 Score=45.69 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
-+||+|.=.+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 579999999999999999998654
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.04 E-value=0.024 Score=45.76 Aligned_cols=24 Identities=21% Similarity=0.445 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+.+.||.|+||||+.+.++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHhcc
Confidence 478899999999999999998664
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.91 E-value=0.025 Score=45.97 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHhhC
Q 024032 101 ILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl 121 (273)
+-|.||+|+|||-|+++++.-
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 469999999999999999864
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=92.82 E-value=0.024 Score=49.36 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=28.5
Q ss_pred eEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccEEEECCee
Q 024032 93 MDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGLVLFAQTS 134 (273)
Q Consensus 93 ~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~I~i~g~~ 134 (273)
...++| ++.+.||.|+|||.|.+.|++... ...-+.+.|.+
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~ 160 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGE 160 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSC
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhH
Confidence 344555 666789999999999999998654 33344554443
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.62 E-value=0.03 Score=45.92 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+-|.||+|+||||+.++++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Confidence 356789999999999999987654
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=92.62 E-value=0.029 Score=47.81 Aligned_cols=36 Identities=11% Similarity=0.078 Sum_probs=28.2
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHhhCcc-CccE
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMYSVLS-RSGL 127 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~gl~~-~~G~ 127 (273)
=+.+-+|+..+|+|++|+|||+|+..+.--.. ....
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v 97 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVI 97 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCE
T ss_pred cccccCCceEeeccCCCCChHHHHHHHHhhhcccCce
Confidence 36789999999999999999999976554444 4433
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.60 E-value=0.37 Score=35.96 Aligned_cols=34 Identities=6% Similarity=-0.039 Sum_probs=25.1
Q ss_pred CCCCEEEEcCcCCCCCHHHHHHHHHhcCCcEEEEc
Q 024032 195 RSDDCALMKNDAEIDDLKSSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~~~l~~l~~~~g~tiiiv 229 (273)
.++++++.||.---=|..+..+.+... |++|++.
T Consensus 72 ~~~d~I~IDEaQFf~dl~~~~~~~~~~-~~~Viv~ 105 (133)
T d1xbta1 72 LGVAVIGIDEGQFFPDIVEFCEAMANA-GKTVIVA 105 (133)
T ss_dssp HTCSEEEESSGGGCTTHHHHHHHHHHT-TCEEEEE
T ss_pred cccceEEeehhHHHHHHHHHHHHHHhc-CCcEEEE
Confidence 478999999975444555666666654 9998888
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=92.52 E-value=0.017 Score=42.10 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=19.9
Q ss_pred EcCCcEEEEEcCCCChHHHHH-HHHhh
Q 024032 95 IPPVITILLMGFSGSGKSSLV-NLMYS 120 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl-~ll~g 120 (273)
+++|+.+.|.+|.|||||+.+ ..+..
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~ 30 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILA 30 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHH
Confidence 467999999999999999544 34443
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.44 E-value=0.037 Score=47.79 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=27.2
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc--CccEEEECCee
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS--RSGLVLFAQTS 134 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~--~~G~I~i~g~~ 134 (273)
.+.++||+|+|||.|.+.|+..+. ...-+.++...
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~ 91 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 91 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 677999999999999999998764 44556665543
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.07 E-value=0.038 Score=46.81 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHhhCc
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+.||||.|+|||+++.-++..+
T Consensus 42 ~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 42 PLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEECCCCCcHHHHHHHHHHHH
Confidence 4799999999999999998643
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=92.04 E-value=0.034 Score=44.70 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
-+||+|.-++|||||++.|.+...
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~~ 28 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKILA 28 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHH
Confidence 379999999999999999987654
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=92.04 E-value=0.034 Score=48.14 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=18.1
Q ss_pred cCCcEEEEEcCCCChHHHHH
Q 024032 96 PPVITILLMGFSGSGKSSLV 115 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl 115 (273)
+.|++..+.|.||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46899999999999999976
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.93 E-value=0.042 Score=44.40 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHhhC
Q 024032 101 ILLMGFSGSGKSSLVNLMYSV 121 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl 121 (273)
..||||.|.|||+++.-++..
T Consensus 46 ~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHH
Confidence 479999999999999999864
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=91.77 E-value=0.037 Score=48.02 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=17.7
Q ss_pred CCcEEEEEcCCCChHHHHHH
Q 024032 97 PVITILLMGFSGSGKSSLVN 116 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ 116 (273)
.|++..+.|.||+|||||--
T Consensus 13 ~~~valffGLSGTGKTTLs~ 32 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLST 32 (318)
T ss_dssp TCCEEEEEECTTSCHHHHTC
T ss_pred CCCEEEEEccCCCCcccccc
Confidence 58899999999999999753
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=91.63 E-value=0.076 Score=46.24 Aligned_cols=24 Identities=42% Similarity=0.429 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.+.|=|+=|+||||+++.|...+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEECCccCCHHHHHHHHHHHhc
Confidence 567889999999999999998766
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=91.60 E-value=0.041 Score=48.52 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHhhCc
Q 024032 101 ILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+-++||+|+|||-|.|.|+.+.
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eeeeCCCCccHHHHHHHHHhhc
Confidence 5678999999999999999764
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.49 E-value=0.034 Score=47.59 Aligned_cols=28 Identities=21% Similarity=0.120 Sum_probs=24.3
Q ss_pred eeEEcCCcEEEEEcCCCChHHHHHHHHh
Q 024032 92 GMDIPPVITILLMGFSGSGKSSLVNLMY 119 (273)
Q Consensus 92 s~~i~~Ge~~aivGpnGsGKSTLl~ll~ 119 (273)
=+.+-+|+..+|+|+.|+|||||+.-+.
T Consensus 62 l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 62 LVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 4789999999999999999999976443
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=91.42 E-value=0.059 Score=46.94 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.++|=|+-||||||+++.|...+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 478889999999999999986544
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=91.02 E-value=0.053 Score=47.12 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=18.1
Q ss_pred cCCcEEEEEcCCCChHHHHH
Q 024032 96 PPVITILLMGFSGSGKSSLV 115 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl 115 (273)
+.|++..+.|-||+|||||-
T Consensus 12 ~~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 36889999999999999997
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=90.67 E-value=0.03 Score=46.75 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=20.2
Q ss_pred EcCCcEEEEEcCCCChHHH--HHHHHhh
Q 024032 95 IPPVITILLMGFSGSGKSS--LVNLMYS 120 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKST--Ll~ll~g 120 (273)
+.+|+.+.|.+|+|||||+ |..++..
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~ 33 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVRE 33 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 4689999999999999997 3344443
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=90.51 E-value=0.088 Score=44.07 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+-.++|||-.-+|||||+|.|.|-..
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEEecCccchhhhhhhhhccce
Confidence 34689999999999999999999654
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=90.09 E-value=0.065 Score=46.69 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHhhCcc
Q 024032 100 TILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.++|=|+=||||||+++.|.-.+.
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~ 30 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFA 30 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 478889999999999999998766
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=89.72 E-value=0.083 Score=42.87 Aligned_cols=20 Identities=30% Similarity=0.629 Sum_probs=17.8
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 024032 100 TILLMGFSGSGKSSLVNLMY 119 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~ 119 (273)
-+|++|.-++|||||+..|.
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHH
Confidence 36999999999999998874
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=89.67 E-value=0.066 Score=39.49 Aligned_cols=21 Identities=33% Similarity=0.292 Sum_probs=16.5
Q ss_pred CCcEEEEEcCCCChHHHHHHH
Q 024032 97 PVITILLMGFSGSGKSSLVNL 117 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~l 117 (273)
..+...|.+|.|||||+++-.
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~ 27 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPA 27 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHH
Confidence 345678899999999987643
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=89.31 E-value=0.071 Score=44.79 Aligned_cols=32 Identities=6% Similarity=-0.090 Sum_probs=20.6
Q ss_pred CCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEc
Q 024032 196 SDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 196 ~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv 229 (273)
.-+.++.|| .--+++. ..++.+... +..++++
T Consensus 216 ~~~~i~iDE-~QD~s~~q~~~~~~l~~~-~~~~~~~ 249 (318)
T d1pjra1 216 KFQYIHIDE-YQDTNRAQYTLVKKLAER-FQNICAV 249 (318)
T ss_dssp HCSEEEESS-GGGCCHHHHHHHHHHHTT-TCCEEEE
T ss_pred ccchhhhHH-HHHHHHHHHHHHHHHHHh-hcceeee
Confidence 457999999 4677777 456666554 4445554
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=89.08 E-value=0.079 Score=43.91 Aligned_cols=33 Identities=9% Similarity=0.007 Sum_probs=21.7
Q ss_pred CCCCEEEEcCcCCCCCHH--HHHHHHHhcCCcEEEEc
Q 024032 195 RSDDCALMKNDAEIDDLK--SSPKYVLRRVDFAMVVS 229 (273)
Q Consensus 195 ~~p~iLlLDEPts~LD~~--~~l~~l~~~~g~tiiiv 229 (273)
.+-+.++.||. --+++. ..+..+... +..++++
T Consensus 205 ~~~~~i~vDE~-QD~~~~~~~~l~~~~~~-~~~~~~~ 239 (306)
T d1uaaa1 205 NKIRYLLVDEY-QDTNTSQYELVKLLVGS-RARFTVV 239 (306)
T ss_dssp TTCSEEEESCG-GGCBHHHHHHHHHHHTT-TCCEEEE
T ss_pred HHhhHHHHHHH-HHhhHHHHhhhhhcccC-CCcceEe
Confidence 46789999994 666776 445666544 4555555
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.08 E-value=0.081 Score=46.23 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=19.9
Q ss_pred EEEEcCCCChHHHHHHHHh---hCcc
Q 024032 101 ILLMGFSGSGKSSLVNLMY---SVLS 123 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~---gl~~ 123 (273)
+||+|.-|+|||||+..|. |.+.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~g~i~ 45 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRAGIIS 45 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcc
Confidence 7999999999999999984 5554
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=88.78 E-value=0.11 Score=43.65 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=24.9
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.++--++.|.||-++||||++++|..++.
T Consensus 101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~lg 129 (267)
T d1u0ja_ 101 FGKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp STTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35556889999999999999999998764
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=88.46 E-value=0.12 Score=42.04 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=18.3
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 024032 101 ILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~g 120 (273)
++++|.-.+|||||+..|+.
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 69999999999999999954
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=87.50 E-value=0.24 Score=43.23 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=17.7
Q ss_pred CcEEEEEcCCCChHHHHHHHH
Q 024032 98 VITILLMGFSGSGKSSLVNLM 118 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll 118 (273)
+.++.|.||-|+||||++..+
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHHH
Confidence 569999999999999987443
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=87.29 E-value=0.17 Score=38.20 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCChHHH-HHHHHhhC
Q 024032 98 VITILLMGFSGSGKSS-LVNLMYSV 121 (273)
Q Consensus 98 Ge~~aivGpnGsGKST-Ll~ll~gl 121 (273)
|.+..|+||=.||||| |++.+..+
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~ 26 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRL 26 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHHH
Confidence 6788999999999999 77776554
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=87.24 E-value=0.13 Score=41.78 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=24.9
Q ss_pred EcCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 95 IPPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 95 i~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+++--++.|.||.++|||++..+|+.++.
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence 46666899999999999999999988753
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.17 E-value=0.081 Score=42.92 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=17.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHh
Q 024032 97 PVITILLMGFSGSGKSSLVNLMY 119 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl~ll~ 119 (273)
.|+-+.|++|.|+|||+..-+.+
T Consensus 57 ~g~~~~i~apTGsGKT~~~~~~~ 79 (237)
T d1gkub1 57 RKESFAATAPTGVGKTSFGLAMS 79 (237)
T ss_dssp TTCCEECCCCBTSCSHHHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHHHH
Confidence 56677899999999997654433
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.74 E-value=0.17 Score=41.69 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=17.8
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 024032 100 TILLMGFSGSGKSSLVNLMY 119 (273)
Q Consensus 100 ~~aivGpnGsGKSTLl~ll~ 119 (273)
-++|+|.-++|||||+..|+
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 36999999999999998885
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.55 E-value=0.15 Score=45.16 Aligned_cols=19 Identities=32% Similarity=0.578 Sum_probs=17.0
Q ss_pred EEEcCCCChHHHHHHHHhh
Q 024032 102 LLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 102 aivGpnGsGKSTLl~ll~g 120 (273)
.||||+|.|||+++.-++.
T Consensus 47 llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 47 VLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp EEEECTTSCHHHHHHHHHH
T ss_pred eEECCCCCCHHHHHHHHHH
Confidence 6899999999999987775
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.40 E-value=0.21 Score=37.08 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=28.0
Q ss_pred cCCcEEEEEcCCCChHHHHHHHH-hhCccCcc--EEE-ECCeeC
Q 024032 96 PPVITILLMGFSGSGKSSLVNLM-YSVLSRSG--LVL-FAQTSS 135 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll-~gl~~~~G--~I~-i~g~~i 135 (273)
++|=.+-+-|-+|||||||.++| ..|.+.+| .|. ++|.++
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni 47 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNK 47 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTC
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCH
Confidence 46667788899999999999998 45555333 454 345444
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=85.76 E-value=0.2 Score=47.65 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=24.1
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
+..+.+.|-|.||||||+-.|.|...+.
T Consensus 84 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 111 (684)
T d1lkxa_ 84 QENQCVIISGESGAGKTEASKKIMQFLT 111 (684)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4667899999999999999999987653
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=85.53 E-value=0.2 Score=47.80 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=25.0
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++.+.+.|-|.||||||+-.|.|...+.
T Consensus 123 ~~nQsIiisGeSGaGKTe~~k~il~yL~ 150 (712)
T d1d0xa2 123 RQNQSLLITGESGAGKTENTKKVIQYLA 150 (712)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999988764
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.03 E-value=0.3 Score=38.82 Aligned_cols=25 Identities=20% Similarity=0.040 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 98 VITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 98 Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+--+.+-||+|+||||+.+.++..+
T Consensus 15 ~~~~l~~G~~g~gk~~~a~~l~~~i 39 (198)
T d2gnoa2 15 GISILINGEDLSYPREVSLELPEYV 39 (198)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4467889999999999999999754
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.76 E-value=0.15 Score=40.18 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=15.7
Q ss_pred CCcEEEEEcCCCChHHHHH
Q 024032 97 PVITILLMGFSGSGKSSLV 115 (273)
Q Consensus 97 ~Ge~~aivGpnGsGKSTLl 115 (273)
.|.-+.|..|+|||||+..
T Consensus 39 ~~~~~il~apTGsGKT~~a 57 (202)
T d2p6ra3 39 SGKNLLLAMPTAAGKTLLA 57 (202)
T ss_dssp TCSCEEEECSSHHHHHHHH
T ss_pred cCCCEEEEcCCCCchhHHH
Confidence 4666789999999999864
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=84.49 E-value=0.19 Score=41.38 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=17.1
Q ss_pred EEEEcCCCChHHHHHHHH
Q 024032 101 ILLMGFSGSGKSSLVNLM 118 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll 118 (273)
++|+|.-++|||||+..|
T Consensus 27 i~iiGHVD~GKSTL~~~L 44 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNI 44 (245)
T ss_dssp EEEEECGGGTHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHH
Confidence 799999999999999988
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=84.41 E-value=0.24 Score=47.14 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=24.0
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVL 122 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~ 122 (273)
+..+.+.|-|.||||||+-.|.|...+
T Consensus 89 ~~~Q~IiisGeSGaGKTe~~k~il~yL 115 (710)
T d1br2a2 89 REDQSILCTGESGAGKTENTKKVIQYL 115 (710)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998876
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=83.68 E-value=0.28 Score=40.35 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 99 ITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 99 e~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
.-+.|.|+.|+||+++.+.|...-.
T Consensus 24 ~pvlI~Ge~GtGK~~~A~~ih~~s~ 48 (247)
T d1ny5a2 24 CPVLITGESGVGKEVVARLIHKLSD 48 (247)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEECCCCcCHHHHHHHHHHhcC
Confidence 3468999999999999999976433
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| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=83.55 E-value=0.34 Score=37.46 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=14.4
Q ss_pred EEEEcCCCChHHHHHHHHhh
Q 024032 101 ILLMGFSGSGKSSLVNLMYS 120 (273)
Q Consensus 101 ~aivGpnGsGKSTLl~ll~g 120 (273)
+-|.+|.|||||...-+++.
T Consensus 26 ~lv~~pTGsGKT~i~~~~~~ 45 (200)
T d1wp9a1 26 CLIVLPTGLGKTLIAMMIAE 45 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred eEEEeCCCCcHHHHHHHHHH
Confidence 34779999999976554443
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| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=83.02 E-value=0.29 Score=47.25 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=24.5
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
...+.+.|-|.||||||+-.|.|...+.
T Consensus 121 ~~~QsIiisGeSGaGKTe~~K~il~yL~ 148 (794)
T d2mysa2 121 RENQSILITGESGAGKTVNTKRVIQYFA 148 (794)
T ss_dssp TCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5677999999999999999999988764
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| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]
Probab=82.29 E-value=0.27 Score=46.95 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=24.7
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
...+.+.|-|.||||||+-.|.+...+.
T Consensus 92 ~~~Q~IiisGeSGsGKTe~~k~il~~l~ 119 (730)
T d1w7ja2 92 ERNQSIIVSGESGAGKTVSAKYAMRYFA 119 (730)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999988764
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| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Bay scallop (Aequipecten irradians) [TaxId: 31199]
Probab=81.28 E-value=0.32 Score=46.91 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=24.2
Q ss_pred cCCcEEEEEcCCCChHHHHHHHHhhCcc
Q 024032 96 PPVITILLMGFSGSGKSSLVNLMYSVLS 123 (273)
Q Consensus 96 ~~Ge~~aivGpnGsGKSTLl~ll~gl~~ 123 (273)
++.+.+.|-|.||||||.-.|.|...+.
T Consensus 119 ~~nQ~IiisGESGaGKTe~~K~il~yL~ 146 (789)
T d1kk8a2 119 RENQSCLITGESGAGKTENTKKVIMYLA 146 (789)
T ss_dssp TSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999988888764
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