Citrus Sinensis ID: 024070

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
Protein Sequence
MSACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFCTLCSYWAAICLKRFIWTYTKCMWVTSQQVGKAHKHFRFFIFCIQIKLCFLSFCIDFI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccccccccHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEEcccEEEEEEcccccccHHHHEEEEcccccccccccEEccccEEEEcccccccEccccccccccccccccccccccccccccccccccHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccEEEccccccHHcHHEEEEEEEEEEEEEEHHHEHEcc
Coil and Loop (DISEMBL)
msacsstfrlpnlpnispqnhnivmPTTVFLSLrhstatnpalcklqcvgnnfdstpktieipgkiteesadceprihssggdggagdspggggggggdsgggggdgegndgeekefgpilKFEEVMKEIELkgvglpddMMEAAKTVGIRKMFLLRYLDLqgsvwplgFLMRYCFMLRdrmladpsflfkvGTEIVIDSCCATLAEFQKRGKDFCTLCSYWAAICLKRFIWTYTKCMWVTSQQVGKAHKHFRFFIFCIQIKLCFLSFCIDFI
Flexible Loop (DISEMBL)
msacsstfrlpnlpnispqnhNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELkgvglpddmMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFCTLCSYWAAICLKRFIWTYTKCMWVTSQQVGKAHKHFRFFIFCIQIKLCFLSFCIDFI
Low Complexity Region (SEG)
MSACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHssggdggagdspggggggggdsgggggdgegndgEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFCTLCSYWAAICLKRFIWTYTKCMWVTSQQVGKAHKHFRFFIFCIQIKLCFLSFCIDFI
Disordered region (IsUnstruct)
********************HNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDS***************************************************************PILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFCTLCSYWAAICLKRFIWTYTKCMWVTSQQVGKAHKHFRFFIFCIQIKLCFLSFCIDF*
Disordered Region (DISOPRED)
******T**LPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTI***********************************************************ILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFCTLCSYWAAICLKRFIWTYTKCMWVTSQQVGKAHKHFRFFIFCIQIKLCFLSFCIDFI
Disordered Region (DISEMBL)
********RLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFCTLCSYWAAICLKRFIWTYTKCMWVTSQQVGKAHKHFRFFIFCIQIKLCFLSFCIDFI
Disordered Region (DISPRO)
******TFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGD**********************D*EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFCTLCSYWAAICLKRFIWTYTKCMWVTSQQVGKAHKHFRFFIFCIQIKLCFLSFCIDFI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFCTLCSYWAAICLKRFIWTYTKCMWVTSQQVGKAHKHFRFFIFCIQIKLCFLSFCIDFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
15242979	433	protein reticulata-related 1 [Arabidopsi	0.435	0.274	0.747	2e-45
297812405	434	hypothetical protein ARALYDRAFT_326573 [	0.435	0.274	0.747	3e-45
255573012	419	conserved hypothetical protein [Ricinus	0.413	0.269	0.725	8e-43
225440504	443	PREDICTED: uncharacterized protein LOC10	0.377	0.232	0.776	3e-41
356523205	443	PREDICTED: uncharacterized protein LOC10	0.377	0.232	0.747	5e-40
356566573	443	PREDICTED: uncharacterized protein LOC10	0.377	0.232	0.747	6e-40
449440303	439	PREDICTED: uncharacterized protein LOC10	0.384	0.239	0.742	1e-39
224103009	278	predicted protein [Populus trichocarpa]	0.358	0.352	0.806	9e-39
359479472	409	PREDICTED: uncharacterized protein LOC10	0.417	0.278	0.710	1e-38
356565715	386	PREDICTED: uncharacterized protein LOC10	0.413	0.292	0.681	5e-38

>gi|15242979|ref|NP_197671.1| protein reticulata-related 1 [Arabidopsis thaliana] gi|13605899|gb|AAK32935.1|AF367348_1 AT5g22790/K8E10_2 [Arabidopsis thaliana] gi|9758754|dbj|BAB09278.1| unnamed protein product [Arabidopsis thaliana] gi|19548025|gb|AAL87376.1| AT5g22790/K8E10_2 [Arabidopsis thaliana] gi|332005693|gb|AED93076.1| protein reticulata-related 1 [Arabidopsis thaliana]

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/119 (74%), Positives = 101/119 (84%)

Query: 109 GNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPL 168
            +  EEKEFGPILKFEEVMKE E +G+ LP+DM+EAAK+VGIRK+FLLRYLDLQGSVWPL
Sbjct: 137 ADKAEEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPL 196

Query: 169 GFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFCTLCSYWAAICL 227
           GFLMR C MLR+RMLADPSFLFKVGTE+ IDSCCAT AE QKRG+DF +    +AA  L
Sbjct: 197 GFLMRSCAMLRNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLL 255

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812405|ref|XP_002874086.1| hypothetical protein ARALYDRAFT_326573 [Arabidopsis lyrata subsp. lyrata] gi|297319923|gb|EFH50345.1| hypothetical protein ARALYDRAFT_326573 [Arabidopsis lyrata subsp. lyrata]

 Score =  188 bits (477), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/119 (74%), Positives = 101/119 (84%)

Query: 109 GNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPL 168
            +  EEKEFGPILKFEEVMKE E +G+ LP+DM+EAAK+VG+RK+FLLRYLDLQGSVWPL
Sbjct: 138 ADKAEEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGLRKLFLLRYLDLQGSVWPL 197

Query: 169 GFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFCTLCSYWAAICL 227
           GFLMR C MLR+RMLADPSFLFKVGTEI IDSCCAT AE QKRG+DF +    +AA  L
Sbjct: 198 GFLMRSCAMLRNRMLADPSFLFKVGTEIAIDSCCATFAEVQKRGEDFWSEFELYAADLL 256

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573012|ref|XP_002527436.1| conserved hypothetical protein [Ricinus communis] gi|223533171|gb|EEF34928.1| conserved hypothetical protein [Ricinus communis]

 Score =  179 bits (455), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 82/113 (72%), Positives = 97/113 (85%)

Query: 115 KEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRY 174
           KEFGPI+++E+++KE E +GV LP DM+EAAKT GIR++F+LRYLDLQGSVWPLGFLM+Y
Sbjct: 102 KEFGPIMRYEQIIKEAETRGVQLPHDMIEAAKTTGIRQLFVLRYLDLQGSVWPLGFLMKY 161

Query: 175 CFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFCTLCSYWAAICL 227
           C MLR+RMLADPSFLFKVGTEIVIDSCCAT AE  KRGKDF +    +AA  L
Sbjct: 162 CTMLRNRMLADPSFLFKVGTEIVIDSCCATFAEVHKRGKDFWSEFELYAADLL 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440504|ref|XP_002272506.1| PREDICTED: uncharacterized protein LOC100264910 [Vitis vinifera]

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 80/103 (77%), Positives = 90/103 (87%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPIL FEEVM+E + +G  LP DM+ AAK+VGIRK+ LLRYLDLQGSVWPLGF M
Sbjct: 152 EEEEFGPILSFEEVMREAQARGASLPSDMLTAAKSVGIRKILLLRYLDLQGSVWPLGFAM 211

Query: 173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDF 215
           + C MLR+RMLADPSFLFK+GTEIVIDSCCAT AE QKRGKDF
Sbjct: 212 KSCSMLRNRMLADPSFLFKIGTEIVIDSCCATFAEVQKRGKDF 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523205|ref|XP_003530232.1| PREDICTED: uncharacterized protein LOC100780872 [Glycine max]

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 77/103 (74%), Positives = 91/103 (88%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPILK++EVM+E E +G  LP DM+EAAK+VGIRK+ LLRYLDLQGS WPLGF M
Sbjct: 152 EEEEFGPILKYDEVMRETEARGATLPLDMIEAAKSVGIRKVLLLRYLDLQGSFWPLGFFM 211

Query: 173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDF 215
           + C MLR+RMLADP+FLFK+G+EIVID+CCAT AE QKRGKDF
Sbjct: 212 KSCSMLRNRMLADPAFLFKIGSEIVIDTCCATFAEIQKRGKDF 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566573|ref|XP_003551505.1| PREDICTED: uncharacterized protein LOC100783806 [Glycine max]

 Score =  170 bits (431), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 77/103 (74%), Positives = 91/103 (88%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPILK++EVM+E E +G  LP DM+EAAK+VGIRK+ LLRYLDLQGS WPLGF M
Sbjct: 152 EEEEFGPILKYDEVMRETEARGATLPLDMIEAAKSVGIRKVLLLRYLDLQGSFWPLGFFM 211

Query: 173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDF 215
           + C MLR+RMLADP+FLFK+G+EIVID+CCAT AE QKRGKDF
Sbjct: 212 KSCSMLRNRMLADPAFLFKIGSEIVIDTCCATFAEIQKRGKDF 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440303|ref|XP_004137924.1| PREDICTED: uncharacterized protein LOC101202748 [Cucumis sativus] gi|449483677|ref|XP_004156657.1| PREDICTED: uncharacterized protein LOC101226426 [Cucumis sativus]

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/105 (74%), Positives = 91/105 (86%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPI+KFEEVMKE+E +GV LP DM+EAAK+ GIRK+ LLRYL++QG  WPLGFLM
Sbjct: 148 EEEEFGPIMKFEEVMKELESRGVTLPSDMLEAAKSEGIRKLLLLRYLEMQGLGWPLGFLM 207

Query: 173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFCT 217
           R C M+R+R+LADPSF FKVG E+VIDSCCAT AE QKRGKDF T
Sbjct: 208 RSCAMIRNRVLADPSFFFKVGVELVIDSCCATFAEVQKRGKDFWT 252

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103009|ref|XP_002312888.1| predicted protein [Populus trichocarpa] gi|222849296|gb|EEE86843.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 79/98 (80%), Positives = 86/98 (87%)

Query: 127 MKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADP 186
           MKEIE +GV LP DMMEAAK++GIRKMFLLRYLDLQGS WPLGFLM+YC MLR+RMLADP
Sbjct: 1   MKEIEARGVELPADMMEAAKSIGIRKMFLLRYLDLQGSAWPLGFLMKYCTMLRNRMLADP 60

Query: 187 SFLFKVGTEIVIDSCCATLAEFQKRGKDFCTLCSYWAA 224
           SFLFKVGTEIVIDSCCAT AE QKRGKDF +    +AA
Sbjct: 61  SFLFKVGTEIVIDSCCATFAEVQKRGKDFWSEFELYAA 98

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479472|ref|XP_003632277.1| PREDICTED: uncharacterized protein LOC100854755 [Vitis vinifera]

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 81/114 (71%), Positives = 91/114 (79%)

Query: 114 EKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMR 173
           E+EFG ILKFEEVM+E E +G  LP DM EAAKT GIR++ L RYLDLQGSVWPLGF M+
Sbjct: 119 EEEFGRILKFEEVMREAENRGASLPSDMWEAAKTTGIREVILFRYLDLQGSVWPLGFGMK 178

Query: 174 YCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFCTLCSYWAAICL 227
           +  MLR+RMLADPSFLFKVGTE+VIDSCCAT AE QKRGKDF      +AA  L
Sbjct: 179 HFSMLRNRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGKDFWAEFELYAADLL 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565715|ref|XP_003551083.1| PREDICTED: uncharacterized protein LOC100799853 [Glycine max]

 Score =  164 bits (414), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 77/113 (68%), Positives = 93/113 (82%)

Query: 115 KEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRY 174
           +EFGP+LKFE VM+E + +GV LP DM EAA+  GIR+MFLLRY++LQGS WP+ FL+++
Sbjct: 97  EEFGPLLKFEAVMRESKARGVKLPPDMEEAARITGIREMFLLRYMELQGSSWPVSFLIQH 156

Query: 175 CFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFCTLCSYWAAICL 227
           C MLR+RMLADPSFLFKVGTEIVIDSCCATLAE QKRGK+F      +AA  L
Sbjct: 157 CAMLRNRMLADPSFLFKVGTEIVIDSCCATLAEVQKRGKNFWAEFELYAADLL 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
TAIR|locus:2158155	433	RER1 "AT5G22790" [Arabidopsis	0.410	0.258	0.785	1e-43
TAIR|locus:2065649	432	LCD1 "AT2G37860" [Arabidopsis	0.377	0.238	0.757	2.1e-36

TAIR|locus:2158155 RER1 "AT5G22790" [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 88/112 (78%), Positives = 99/112 (88%)

Query:   113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
             EEKEFGPILKFEEVMKE E +G+ LP+DM+EAAK+VGIRK+FLLRYLDLQGSVWPLGFLM
Sbjct:   141 EEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLM 200

Query:   173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFCTLCSYWAA 224
             R C MLR+RMLADPSFLFKVGTE+ IDSCCAT AE QKRG+DF +    +AA
Sbjct:   201 RSCAMLRNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAA 252

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2065649 LCD1 "AT2G37860" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 78/103 (75%), Positives = 85/103 (82%)

Query:   113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
             EEKEFGPILKFEEVMKE E +G  LP DM+EAAK  GIRK+ LLRYLDLQ S   LGF +
Sbjct:   141 EEKEFGPILKFEEVMKETEARGATLPSDMLEAAKNYGIRKVLLLRYLDLQSSAGLLGFAI 200

Query:   173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDF 215
             R   MLR+RMLADPSFLFK+G EIVIDSCCAT+AE QKRGKDF
Sbjct:   201 RSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVAEVQKRGKDF 243


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.141   0.460    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      273       239   0.00092  113 3  11 22  0.45    32
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  210 KB (2116 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.75u 0.09s 18.84t   Elapsed:  00:00:00
  Total cpu time:  18.75u 0.09s 18.84t   Elapsed:  00:00:00
  Start:  Sat May 11 09:25:32 2013   End:  Sat May 11 09:25:32 2013

GO:0003674 "molecular_function" evidence=ND

GO:0048366 "leaf development" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	273
pfam11891	179	pfam11891, DUF3411, Domain of unknown function (DU	2e-13
PLN03138	796	PLN03138, PLN03138, Protein TOC75; Provisional	3e-06
PRK05325	401	PRK05325, PRK05325, hypothetical protein; Provisio	4e-06
PHA00370	297	PHA00370, III, attachment protein	2e-04
COG1512	271	COG1512, COG1512, Beta-propeller domains of methan	2e-04
PRK06958	182	PRK06958, PRK06958, single-stranded DNA-binding pr	4e-04
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	0.001
COG2718	423	COG2718, COG2718, Uncharacterized conserved protei	0.001
PLN03184	673	PLN03184, PLN03184, chloroplast Hsp70; Provisional	0.001
PHA00370	297	PHA00370, III, attachment protein	0.002
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	0.002
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	0.002
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	0.002
pfam07172	91	pfam07172, GRP, Glycine rich protein family	0.002
PRK06958	182	PRK06958, PRK06958, single-stranded DNA-binding pr	0.003
PHA00370	297	PHA00370, III, attachment protein	0.004
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	0.004

>gnl|CDD|221294 pfam11891, DUF3411, Domain of unknown function (DUF3411)

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 23/36 (63%), Positives = 30/36 (83%)

Query: 180 DRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDF 215
           +R+LADPSFLFK+  E VID C AT+AE +KRG++F
Sbjct: 1   ERLLADPSFLFKLAMEEVIDICAATVAEVEKRGENF 36

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif. Length = 179

>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 11/112 (9%)

Query: 2   SACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIE 61
           S   S     +L +  PQ  +         S + +T +  A      +  +  ++  +  
Sbjct: 5   STMVSAAASTSLSSSRPQLSSFSS-----RSPQSATRSPRA----SSIKCSASASASSSA 55

Query: 62  IPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGE 113
                +  +         S      G   GGGG GG   GGGGG G G    
Sbjct: 56  TSSSASLVAN--GAVALLSASAISGGGGGGGGGFGGFGGGGGGGGGGGGGWR 105

Length = 796

>gnl|CDD|235409 PRK05325, PRK05325, hypothetical protein; Provisional

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 22/84 (26%)

Query: 58  KTIEIPGKITEESADCEPRI-HSSGGDGG----------AGDSPGGGGGGGGDSGGGGGD 106
           + + IP +  +E     P+  +  GG              GD  G   GGGG  G GGGD
Sbjct: 37  EVVSIPIRDIDE-----PKFRYGRGGKREGVGPGNGEFVVGDRIGRPQGGGGGGGQGGGD 91

Query: 107 GEGNDGEE-----KEFGPILKFEE 125
           GEG D  E     +E   +L FE+
Sbjct: 92  GEGEDYFEFEISLEELLDLL-FED 114

Length = 401

>gnl|CDD|164795 PHA00370, III, attachment protein

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 80  SGGDGGAGDSPGG-GGGGGGDSGGGGGDGEGNDGEEKEFG 118
           +GGD G G++ GG GGG  G SGGGG DG G++G      
Sbjct: 96  TGGDTGGGNTGGGSGGGDTGGSGGGGSDGGGSEGGSTGKS 135

Length = 297

>gnl|CDD|224429 COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 16/33 (48%), Positives = 16/33 (48%)

Query: 75  PRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDG 107
                  G  G G S GG  GGGG SGGGG  G
Sbjct: 237 SSGSGGSGGSGGGSSGGGFSGGGGSSGGGGASG 269

Length = 271

>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 19/34 (55%), Positives = 20/34 (58%)

Query: 79  SSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDG 112
            SGG GG GD  G GGGGGG  GG GG+     G
Sbjct: 113 GSGGGGGGGDEGGYGGGGGGGGGGYGGESRSGGG 146

Length = 182

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 17/32 (53%), Positives = 17/32 (53%)

Query: 81  GGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDG 112
           G  GG G   GGGGGGG   GG GG   G  G
Sbjct: 5   GFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRG 36

Length = 293

>gnl|CDD|225339 COG2718, COG2718, Uncharacterized conserved protein [Function unknown]

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 76  RIHSSGGDGGAGD---SPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIEL 132
            +     +   GD    P GGGGGG   G   GDGEG D    EF   +  EEV+ ++  
Sbjct: 74  HVGPGNDEFAVGDRIERPQGGGGGGSGKGQAAGDGEGED----EFVFQISREEVL-DLLF 128

Query: 133 KGVGLPD 139
           + + LP+
Sbjct: 129 EDLELPN 135

Length = 423

>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 77  IHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGE 113
           +++  G GGAG +PGG  G    S  GG   +  D +
Sbjct: 634 LYNQPGAGGAGPAPGGEAGSSSSSSSGGDGDDVIDAD 670

Length = 673

>gnl|CDD|164795 PHA00370, III, attachment protein

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 77  IHSSGGDGGAGDSPGGGGGGGGDSGGG---GGDGEGNDG 112
             S+  DG  G +  GG   GGD+GGG   GG G G+ G
Sbjct: 77  TGSADKDGDGGGTGEGGSDTGGDTGGGNTGGGSGGGDTG 115

Length = 297

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 15/29 (51%), Positives = 15/29 (51%)

Query: 81  GGDGGAGDSPGGGGGGGGDSGGGGGDGEG 109
           GG GG      G G GGG  G GGG G G
Sbjct: 25  GGRGGGRGGGRGRGRGGGGGGRGGGGGGG 53

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 18/32 (56%), Positives = 18/32 (56%)

Query: 81  GGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDG 112
           GG GG G    GGGG GG  GGG G G G  G
Sbjct: 12  GGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGG 43

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 16/32 (50%), Positives = 16/32 (50%)

Query: 79  SSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGN 110
             GG  G G   G GGGGGG  GGGGG     
Sbjct: 26  GRGGGRGGGRGRGRGGGGGGRGGGGGGGPGKV 57

Length = 293

>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 21/38 (55%), Positives = 21/38 (55%)

Query: 81  GGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFG 118
           GG GG G   GGG GGGG  GGGGG G G  G     G
Sbjct: 47  GGGGGYGGGGGGGYGGGGYYGGGGGYGGGGGGYPGGGG 84

This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses. Length = 91

>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 17/31 (54%), Positives = 18/31 (58%)

Query: 79  SSGGDGGAGDSPGGGGGGGGDSGGGGGDGEG 109
             GG G  G+S  GGGGG    GGGGG G G
Sbjct: 131 GGGGGGYGGESRSGGGGGRASGGGGGGAGGG 161

Length = 182

>gnl|CDD|164795 PHA00370, III, attachment protein

 Score = 37.6 bits (87), Expect = 0.004
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 80  SGGDGGAGDSPGGGGGGGGDSGGGGG-DGEGNDG 112
            GG    GD+ GG  GGG   G  GG  G G+DG
Sbjct: 91  EGGSDTGGDTGGGNTGGGSGGGDTGGSGGGGSDG 124

Length = 297

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 16/32 (50%), Positives = 16/32 (50%)

Query: 81  GGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDG 112
           G  GG G   GGGG GGG  GG G    G  G
Sbjct: 13  GRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGG 44

Length = 293

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	273
PF11891	180	DUF3411: Domain of unknown function (DUF3411); Int	99.96
PLN03138	796	Protein TOC75; Provisional	95.34
TIGR02877	371	spore_yhbH sporulation protein YhbH. This protein	88.72
PRK05325	401	hypothetical protein; Provisional	88.41
PF04285	421	DUF444: Protein of unknown function (DUF444); Inte	86.92
PHA00370	297	III attachment protein	85.65
PHA00370	297	III attachment protein	85.27
PF02084	238	Bindin: Bindin; InterPro: IPR000775 Bindin, the ma	83.16

>PF11891 DUF3411: Domain of unknown function (DUF3411); InterPro: IPR021825 This presumed domain is functionally uncharacterised

Probab=99.96  E-value=1.2e-31  Score=234.64  Aligned_cols=81  Identities=32%  Similarity=0.457  Sum_probs=76.5

Q ss_pred             hhHhcCcchhHHHhhhhhhcccceeeeeeecccccccchhhhhhhhhhHhhhhhhheeeeecccccc----cc----chh
Q 024070          180 DRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFCTLCSYWAAICLKRFIWTYTKCMWVTSQQVG----KA----HKH  251 (273)
Q Consensus       180 ~RmLADP~FlfKlg~E~vI~v~~~v~aE~~~Rge~F~~ElD~V~advv~~~i~df~l~VwllAPt~~----~a----~~~  251 (273)
                      +||||||+|||||++|++||++|+++|||++|||+||+|||||++|+++++|+||+| |||||||+.    .+    +.+
T Consensus         1 ~RllADP~Fl~Kl~~E~~i~i~~~~~~e~~~R~e~f~~E~d~v~~d~v~~~i~n~~l-v~llAPt~s~~~~~~~~~~~~~   79 (180)
T PF11891_consen    1 ERLLADPSFLFKLAIEEVIGIGCATAAEYAKRGERFWNELDFVFSDVVVGSIVNFAL-VWLLAPTRSFGSPAASSPGGGL   79 (180)
T ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHH-HHhccchHhhCcccccccchHH
Confidence            699999999999999999999999999999999999999999999999999999999 999999982    12    479


Q ss_pred             hhhhhhCCCc
Q 024070          252 FRFFIFCIQI  261 (273)
Q Consensus       252 ~~~f~~cp~~  261 (273)
                      +|+|+.||+|
T Consensus        80 ~~~~~~~P~n   89 (180)
T PF11891_consen   80 QKFLGSLPNN   89 (180)
T ss_pred             HHHHHhChHH
Confidence            9999999976

This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif.

>PLN03138 Protein TOC75; Provisional

Probab=95.34  E-value=0.039  Score=58.65  Aligned_cols=21  Identities=24%  Similarity=0.176  Sum_probs=16.0

Q ss_pred             CcccccccCCCCCCCCCCCCc
Q 024070            2 SACSSTFRLPNLPNISPQNHN   22 (273)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~   22 (273)
                      ++|.+.++-++++.-.||+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~   25 (796)
T PLN03138          5 STMVSAAASTSLSSSRPQLSS   25 (796)
T ss_pred             cccceeccCCCccCCCccccc
Confidence            577788888888887777654

>TIGR02877 spore_yhbH sporulation protein YhbH

Probab=88.72  E-value=0.9  Score=44.85  Aligned_cols=28  Identities=32%  Similarity=0.363  Sum_probs=17.9

Q ss_pred             CCCCCCCCCCcccccccccHHHHHHHHHHhCC
Q 024070          104 GGDGEGNDGEEKEFGPILKFEEVMKEIELKGV  135 (273)
Q Consensus       104 ~g~g~~~d~~d~efg~il~~eaVLqea~rr~~  135 (273)
                      .|+|+|+|+-+-|    ++.+|+++....-++
T Consensus       101 ag~geGed~fe~e----~s~eE~~~~lfEdLe  128 (371)
T TIGR02877       101 AGDQEGEDYYETE----VTLEELFELLFEDLE  128 (371)
T ss_pred             CCCCCCcceEEEE----ecHHHHHHHHHhhcc
Confidence            4444555544434    888999888877654

This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.

>PRK05325 hypothetical protein; Provisional

Probab=88.41  E-value=0.95  Score=45.00  Aligned_cols=16  Identities=13%  Similarity=0.044  Sum_probs=11.7

Q ss_pred             cccHHHHHHHHHHhCC
Q 024070          120 ILKFEEVMKEIELKGV  135 (273)
Q Consensus       120 il~~eaVLqea~rr~~  135 (273)
                      -++.+|+++....-++
T Consensus       101 els~eE~~~~lfEdLe  116 (401)
T PRK05325        101 EISLEELLDLLFEDLE  116 (401)
T ss_pred             EecHHHHHHHHHhhcC
Confidence            3788888888776554

>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56

Probab=86.92  E-value=1.3  Score=44.31  Aligned_cols=28  Identities=36%  Similarity=0.317  Sum_probs=16.1

Q ss_pred             CCCCCCCCCCcccccccccHHHHHHHHHHhCC
Q 024070          104 GGDGEGNDGEEKEFGPILKFEEVMKEIELKGV  135 (273)
Q Consensus       104 ~g~g~~~d~~d~efg~il~~eaVLqea~rr~~  135 (273)
                      .|+|.|+|+-+    --++.+|++.....-++
T Consensus       105 ag~geGeD~fe----~els~eE~~~llfEdLe  132 (421)
T PF04285_consen  105 AGDGEGEDDFE----FELSREEFLDLLFEDLE  132 (421)
T ss_pred             CCCCCCCCeEE----EEEEHHHHHHHhHHHhc
Confidence            34444444433    34788888777765543

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].

>PHA00370 III attachment protein

Probab=85.65  E-value=1.1  Score=42.90  Aligned_cols=21  Identities=19%  Similarity=0.325  Sum_probs=13.8

Q ss_pred             ccceeeeeeecccccccchhh
Q 024070          200 SCCATLAEFQKRGKDFCTLCS  220 (273)
Q Consensus       200 v~~~v~aE~~~Rge~F~~ElD  220 (273)
                      -.|.-+.+++---++|..+.|
T Consensus       243 n~C~~FV~~~geVYe~~I~Cd  263 (297)
T PHA00370        243 HGCTPFVFAQGKVYEFIIGCD  263 (297)
T ss_pred             CCCCcceeeccchhhhhhcch
Confidence            466777777776667766644

>PHA00370 III attachment protein

Probab=85.27  E-value=1.4  Score=42.23  Aligned_cols=6  Identities=33%  Similarity=0.158  Sum_probs=2.5

Q ss_pred             ccCCcc
Q 024070          161 LQGSVW  166 (273)
Q Consensus       161 Lqa~p~  166 (273)
                      =..+||
T Consensus       221 g~gS~~  226 (297)
T PHA00370        221 GDGSPL  226 (297)
T ss_pred             cCCcHH
Confidence            334444

>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]

Probab=83.16  E-value=4.3  Score=38.13  Aligned_cols=25  Identities=16%  Similarity=0.256  Sum_probs=19.0

Q ss_pred             HHHHHHHHHhCCCCcHHHHHHHHHc
Q 024070          124 EEVMKEIELKGVGLPDDMMEAAKTV  148 (273)
Q Consensus       124 eaVLqea~rr~~sLPaDL~~Aae~G  148 (273)
                      +.|.+...+|..+||-|+-+-++.|
T Consensus       107 ~~ikavLgaTKiDLPVDINDPYDlG  131 (238)
T PF02084_consen  107 EDIKAVLGATKIDLPVDINDPYDLG  131 (238)
T ss_pred             HHHHHHhcccccccccccCChhhHH
Confidence            4566667788889999987777666

The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00