Citrus Sinensis ID: 024087

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
Protein Sequence
MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQTCSMLCFMEWSTQEGRKLIRNFIFDMLMGSP
Secondary Structure (PSIPRED)
ccHHHHHHHHcccccEEEEEccccccEEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEcccccccccHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHccccHHHHHHHcccccccccccEEEEEEEEcEEEEEEEEEcccHHHcEEccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccEEEEEcccccccEEEEEEccccccHHHHHHHHHHHccEEEEEEEEEccccEEEEEEEEEEccccEcccHHHHHHHHHHHcccccccccccEEcccccccccEEEEEEccccccHHHHHHHHHHHccccEEEEEEEEcccEEEEEEEEEccccccccccHHHHHHHHHHHHHHHccccccccccEEEcccccccHHHHHHHHHHHcccccccccccccccccccccEEEEEEccccEEEEEEEEccHHHHEHEEcccc
Coil and Loop (DISEMBL)
MDDEYAKLIrrmnpprvvidnntcadaTVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYissdggwfmdvfnvidcdgkkirDKEVIDYIQQRLetdasfapslrssvgvmpteehtsieftgtdrpglfSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVtdhstgyaikdpkRLSTIKELLFNVLRGYDDfrkaktslsppgimnreRRLHQIMFDDRDYERVEKAVGrvedkssrpqtcsmlCFMEWSTQEGRKLIRNFIFDMLMGSP
Flexible Loop (DISEMBL)
MDDEYAKlirrmnpprvvidnnTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYissdggwfmDVFNVIDCDGKKIRDKEVIDYIQQRletdasfapslrSSVGVMPTEEHTSieftgtdrpGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHstgyaikdpkrlsTIKELLFNVLRGYDDfrkaktslsppgimnrerrLHQIMFDDRDYERVEKAvgrvedkssrpqtcSMLCFMEWSTQEGRKLIRNFIFDMLMGSP
Low Complexity Region (SEG)
MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQTCSMLCFMEWSTQEGRKLIRNFIFDMLMGSP
Disordered region (IsUnstruct)
********IRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD********************SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRK*****************HQIMFD**********************TCSMLCFMEWSTQEGRKLIRNFIFDML****
Disordered Region (DISOPRED)
*DDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL**********RSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDP*RLSTIKELLFNVL*********************ERRLHQIMFDDRD******************QTCSMLCFMEWSTQEGRKLIRNFIFDMLMGS*
Disordered Region (DISEMBL)
MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEK***********PQTCSMLCFMEWSTQEGRKLIRNFIFDMLMGSP
Disordered Region (DISPRO)
MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYER***********SSRPQTCSMLCFMEWSTQEGRKLIRNFIFDMLMGSP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQTCSMLCFMEWSTQEGRKLIRNFIFDMLMGSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	272	2.2.26 [Sep-21-2011]
Q8RQD1	933	[Protein-PII] uridylyltra	yes	no	0.294	0.085	0.382	8e-08
Q87MD6	874	[Protein-PII] uridylyltra	yes	no	0.599	0.186	0.278	1e-07
Q53245	948	[Protein-PII] uridylyltra	N/A	no	0.290	0.083	0.361	2e-07
Q89VX9	929	[Protein-PII] uridylyltra	yes	no	0.283	0.082	0.384	3e-07
Q98C27	933	[Protein-PII] uridylyltra	yes	no	0.294	0.085	0.382	3e-07
Q1QRM1	931	[Protein-PII] uridylyltra	yes	no	0.275	0.080	0.381	3e-07
A4YKP3	931	[Protein-PII] uridylyltra	yes	no	0.411	0.120	0.309	3e-07
A5ETJ9	931	[Protein-PII] uridylyltra	yes	no	0.397	0.116	0.311	4e-07
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.371	0.106	0.352	7e-07
A7N1X9	874	[Protein-PII] uridylyltra	yes	no	0.573	0.178	0.275	8e-07

>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense GN=glnD PE=3 SV=1

 Score = 57.8 bits (138), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 48/81 (59%)

Query: 14  PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
           PPRV+IDNN     TVI+V+  ++ G+L  + + L ++ L I  A IS+ G   +DVF V
Sbjct: 844 PPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYV 903

Query: 74  IDCDGKKIRDKEVIDYIQQRL 94
            D  G K+  +  +  I++RL
Sbjct: 904 KDVFGLKVTHENKLAQIRERL 924

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Azospirillum brasilense (taxid: 192)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|Q87MD6|GLND_VIBPA [Protein-PII] uridylyltransferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=glnD PE=3 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 20/183 (10%)

Query: 6   AKLIRRMNP--PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SS 62
           A L+R  +P  P V+I        T + V + ++  +   V+  L+  N  +  A I +S
Sbjct: 668 AHLLRMDDPNKPLVLISKKATRGGTEVFVYTKDQPALFATVVAELDRRNFNVHDAQIMTS 727

Query: 63  DGGWFMDVFNVIDCDGKKI---RDKEVIDYIQQRLET------DASFAPS------LRSS 107
             G  +D F V+D  G+ I   R   VI ++   LE            P+      +++ 
Sbjct: 728 KDGHVIDTFMVLDQHGEAIDESRHAAVIKHLTHVLEAGRPTKIKTRRTPNKLQHFNVKTK 787

Query: 108 VGVMPTE--EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDH 165
           V  +PT+  +HT +EF   D PGL ++V    ADL+ N+  A+I T  +RA  +  +T  
Sbjct: 788 VDFLPTKGKKHTLMEFVALDTPGLLAKVGRTFADLNINLHGAKITTIGERAEDLFILTSE 847

Query: 166 STG 168
           + G
Sbjct: 848 AGG 850

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Vibrio parahaemolyticus (taxid: 670)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3 SV=2

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 51/83 (61%)

Query: 14  PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
           PP V+I N+     TVI+V+ +++ G+L ++  VL+D++L I+ A I++ G   +D F V
Sbjct: 825 PPSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYV 884

Query: 74  IDCDGKKIRDKEVIDYIQQRLET 96
            D  G+KI ++    YI  RL+ 
Sbjct: 885 ADLVGQKISNENRRAYITARLKA 907

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium tropici (taxid: 398)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum (strain USDA 110) GN=glnD PE=3 SV=2

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK 172
           ++ +T IE +G DRPGL  E+   ++ L+ N+ +A + T  +RA  V +VTD   G  I 
Sbjct: 845 SDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGAQIN 903

Query: 173 DPKRLSTIKELLFNVLRG 190
            P R S IK  L +V+ G
Sbjct: 904 APTRQSAIKSALTHVMAG 921

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain MAFF303099) GN=glnD PE=3 SV=1

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLS 178
           IE  G DRPGL SE+   L+DL  ++ +A I T  ++     +VTD  TG  I  P R++
Sbjct: 849 IEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTD-LTGQKIDSPARIA 907

Query: 179 TIKELLFNVLRGYDDFRKAKT 199
           TI+  L   L G    R  K 
Sbjct: 908 TIRNRLMATLEGIAPERGGKA 928

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium loti (strain MAFF303099) (taxid: 266835)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=glnD PE=3 SV=1

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK 172
           ++ HT IE +G DRPGL  ++ A ++ L+ N+ +A + T  +RA  V +VTD   G  I 
Sbjct: 846 SDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTD-LLGARIT 904

Query: 173 DPKRLSTIKELLFNVL 188
            P R + IK  L ++L
Sbjct: 905 APTRQAAIKRALIHLL 920

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Nitrobacter hamburgensis (strain X14 / DSM 10229) (taxid: 323097)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain ORS278) GN=glnD PE=3 SV=1

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 1/113 (0%)

Query: 80  KIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLAD 139
           K+R  + +     R +   +F+     S+    +E +T IE +G DRPGL  E+   ++ 
Sbjct: 813 KLRLPDAVARRTTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISK 872

Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD 192
           L+ N+ +A + T  +RA  V +VTD   G  I  P R + IK  L ++L   D
Sbjct: 873 LNLNIASAHVATFGERARDVFYVTD-LLGAQINAPTRQAAIKSALLHLLASED 924

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Bradyrhizobium sp. (strain ORS278) (taxid: 114615)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1

 Score = 55.5 bits (132), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 1/109 (0%)

Query: 80  KIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLAD 139
           K+R  + +     R +   +F+     S+    +E +T IE +G DRPGL  E+   ++ 
Sbjct: 813 KLRLPDAVARRTTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISK 872

Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188
           L+ N+ +A + T  +RA  V +VTD   G  I  P R + IK  L ++L
Sbjct: 873 LNLNIASAHVATFGERARDVFYVTD-LLGAQINAPTRQAAIKSALLHLL 920

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) (taxid: 288000)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 54.7 bits (130), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 2   DDEYAKLIRRMN----PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKK 57
           D  +    RRM     PPRVVIDN      TVI+V+  ++ G+L  V   L+  +L I  
Sbjct: 839 DASHHSTSRRMRAIHVPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISS 898

Query: 58  AYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP 102
           A+I++ G   +DVF V D  G KI D   +  +++ L    + AP
Sbjct: 899 AHITTYGMRAVDVFYVRDLLGMKITDPVRLARLRETLLASLTSAP 943

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|A7N1X9|GLND_VIBHB [Protein-PII] uridylyltransferase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=glnD PE=3 SV=1

 Score = 54.7 bits (130), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 18/174 (10%)

Query: 13  NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVF 71
           + P V+I        T + V S ++  +   V+  L+  N  +  A I +S  G+ +D F
Sbjct: 677 SKPLVLISKKATRGGTEVFVYSPDQPALFATVVAELDRRNFNVHDAQIMTSKDGYVLDTF 736

Query: 72  NVIDCDGKKI---RDKEVIDYIQQRLE------TDASFAPS------LRSSVGVMPTE-- 114
            V+D  GK I   R   V  +I   LE            P+      +++ V  +PT+  
Sbjct: 737 MVLDQHGKAIEEGRHSAVTKHITHVLEDGRPTKIKTRRTPNKLQHFNVKTKVDFLPTKSK 796

Query: 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG 168
           + T +EF   D PGL ++V    ADL  N+  A+I T  +RA  +  +T  + G
Sbjct: 797 KRTLMEFVALDTPGLLAKVGRTFADLGINLHAAKITTIGERAEDLFILTSEAGG 850

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Vibrio harveyi (strain ATCC BAA-1116 / BB120) (taxid: 338187)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
255543679	443	amino acid binding protein, putative [Ri	0.985	0.604	0.751	1e-112
224143611	439	predicted protein [Populus trichocarpa]	0.886	0.548	0.805	1e-111
224055763	441	predicted protein [Populus trichocarpa]	0.886	0.546	0.799	1e-110
356561659	445	PREDICTED: uncharacterized protein LOC10	0.882	0.539	0.767	1e-104
225451503	440	PREDICTED: uncharacterized protein LOC10	0.904	0.559	0.746	1e-104
356571573	445	PREDICTED: uncharacterized protein LOC10	0.878	0.537	0.764	1e-102
357503685	442	Amino acid binding protein, putative [Me	0.845	0.520	0.740	1e-101
449490057	440	PREDICTED: uncharacterized protein LOC10	0.900	0.556	0.720	1e-99
449441712	445	PREDICTED: uncharacterized protein LOC10	0.900	0.550	0.720	1e-99
357503687	475	Amino acid binding protein, putative [Me	0.908	0.52	0.653	1e-95

>gi|255543679|ref|XP_002512902.1| amino acid binding protein, putative [Ricinus communis] gi|223547913|gb|EEF49405.1| amino acid binding protein, putative [Ricinus communis]

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/270 (75%), Positives = 229/270 (84%), Gaps = 2/270 (0%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MDDEYAKLIRRMNPPRVVIDN+ C DATVI+VDSVNKHGILLQV+QVL D+NLVIKKAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNDVCEDATVIQVDSVNKHGILLQVVQVLTDMNLVIKKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSDGGWFMDVFNVID DG KIRDKEVI YIQ+RLE++ASFAPSLR SVGVMP+E+HTSIE
Sbjct: 61  SSDGGWFMDVFNVIDQDGNKIRDKEVIGYIQRRLESNASFAPSLRGSVGVMPSEDHTSIE 120

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            +G DRPGL SEVCAVLADL CNVVNAEIWTHN RAAAVVHVTD STG A+KDPKRLSTI
Sbjct: 121 LSGNDRPGLLSEVCAVLADLRCNVVNAEIWTHNARAAAVVHVTDDSTGCAVKDPKRLSTI 180

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEK-AVGRVEDKSSR 239
           KELL NVL+G +D + AK +LSPPGI +RERRLHQIMF DRDYERV++  +GR+EDKSSR
Sbjct: 181 KELLCNVLKGNNDLKAAKMTLSPPGITSRERRLHQIMFADRDYERVDRVGLGRLEDKSSR 240

Query: 240 PQTCSMLCFMEWSTQEGRKLIR-NFIFDML 268
           P    +    ++S    R   R   +FD++
Sbjct: 241 PHVTVLNIEKDYSVITMRSKDRPKLLFDIV 270

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143611|ref|XP_002336061.1| predicted protein [Populus trichocarpa] gi|222869846|gb|EEF06977.1| predicted protein [Populus trichocarpa]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/242 (80%), Positives = 218/242 (90%), Gaps = 1/242 (0%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MD+EYAKLIRR+NPPRVVIDN+ C +ATVI+VDSVNKHGILL+V+QVL D+NLVI KAYI
Sbjct: 1   MDEEYAKLIRRLNPPRVVIDNDACEEATVIQVDSVNKHGILLKVVQVLTDMNLVITKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSDG WFMDVFNV+D DGKKIRDKEV+DYIQ+RLE++ASFAPSLR SVGVMP+EEHT+IE
Sbjct: 61  SSDGDWFMDVFNVVDQDGKKIRDKEVMDYIQRRLESNASFAPSLRGSVGVMPSEEHTAIE 120

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            TGTDRPGL SEVCAVL DLHCNVVNAEIWTHN RAAAVVHVTD STG AIKDPKRLSTI
Sbjct: 121 LTGTDRPGLLSEVCAVLTDLHCNVVNAEIWTHNTRAAAVVHVTDDSTGCAIKDPKRLSTI 180

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKA-VGRVEDKSSR 239
           +ELL NVL+G DD + A T+LSPPG+ +RERRLHQIMF DRDYERVE+A + R EDKSSR
Sbjct: 181 RELLCNVLKGNDDSKTATTTLSPPGVTSRERRLHQIMFADRDYERVERAGLARFEDKSSR 240

Query: 240 PQ 241
           P 
Sbjct: 241 PH 242

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055763|ref|XP_002298641.1| predicted protein [Populus trichocarpa] gi|222845899|gb|EEE83446.1| predicted protein [Populus trichocarpa]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/244 (79%), Positives = 218/244 (89%), Gaps = 3/244 (1%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MD+EYAKLIRR+NPPRVVIDN+ C +ATVI+VDSVNKHGILL+V+QVL D+NLVI KAYI
Sbjct: 1   MDEEYAKLIRRLNPPRVVIDNDACEEATVIQVDSVNKHGILLKVVQVLTDMNLVITKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ--RLETDASFAPSLRSSVGVMPTEEHTS 118
           SSDG WFMDVFNV+D DGKKIRDKEV+DYIQ+  RLE++ASFAPSLR SVGVMP+EEHT+
Sbjct: 61  SSDGDWFMDVFNVVDQDGKKIRDKEVMDYIQRVRRLESNASFAPSLRGSVGVMPSEEHTA 120

Query: 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLS 178
           IE TGTDRPGL SEVCAVL DLHCNVVNAEIWTHN RAAAVVHVTD STG AIKDPKRLS
Sbjct: 121 IELTGTDRPGLLSEVCAVLTDLHCNVVNAEIWTHNTRAAAVVHVTDDSTGCAIKDPKRLS 180

Query: 179 TIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKA-VGRVEDKS 237
           TI+ELL NVL+G DD + A T+LSPPG+ +RERRLHQIMF DRDYERVE+A + R EDKS
Sbjct: 181 TIRELLCNVLKGNDDSKTATTTLSPPGVTSRERRLHQIMFADRDYERVERAGLARFEDKS 240

Query: 238 SRPQ 241
           SRP 
Sbjct: 241 SRPH 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561659|ref|XP_003549097.1| PREDICTED: uncharacterized protein LOC100818506 [Glycine max]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/241 (76%), Positives = 209/241 (86%), Gaps = 1/241 (0%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MDDEYAKLIRRMNPPRVVIDNN C +ATVI+VDSVNKHGILL V+QV++D+NLVI KAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNNACENATVIQVDSVNKHGILLDVVQVISDMNLVITKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSD  WFMDVFNVID +G KIRDKEVIDYIQ+RLE + SFAPSLR SVGV+PTEEHT IE
Sbjct: 61  SSDAVWFMDVFNVIDHNGNKIRDKEVIDYIQRRLENNPSFAPSLRESVGVVPTEEHTVIE 120

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            TGTDRPGL SE+CAVL DLHCNVV AEIWTHN RAAAVVHVTD S+G AIKDP RLSTI
Sbjct: 121 LTGTDRPGLLSEICAVLTDLHCNVVTAEIWTHNTRAAAVVHVTDDSSGCAIKDPSRLSTI 180

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKA-VGRVEDKSSR 239
           ++LL NVLRG +D + A+T+LSPPG+ NR+RRLHQIMF DRDYER+E+A  G + D+  R
Sbjct: 181 RDLLSNVLRGSNDPKTARTTLSPPGVTNRDRRLHQIMFADRDYERIERAGRGGLRDRDKR 240

Query: 240 P 240
           P
Sbjct: 241 P 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451503|ref|XP_002272024.1| PREDICTED: uncharacterized protein LOC100248040 [Vitis vinifera] gi|296082319|emb|CBI21324.3| unnamed protein product [Vitis vinifera]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/249 (74%), Positives = 211/249 (84%), Gaps = 3/249 (1%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MDDEYAKLIRRMNPPRVVIDN+   +ATVI+VDSVNKHGILL+V+QVL D+NLVI KAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNDASEEATVIQVDSVNKHGILLEVVQVLTDMNLVITKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSDGGWFMDVFNV+D DG KIRDK VI+YI + LE DASF P +R +VGVMP+E+HTSIE
Sbjct: 61  SSDGGWFMDVFNVVDGDGNKIRDKGVINYITKTLERDASFVPPMRGTVGVMPSEDHTSIE 120

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            +GTDRPGL SEVCAVLADLHCNVVNAEIWTHN RAAAVVHVTD STG AI+DP RLS I
Sbjct: 121 LSGTDRPGLLSEVCAVLADLHCNVVNAEIWTHNARAAAVVHVTDDSTGCAIEDPNRLSKI 180

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKA-VGRVEDKSSR 239
           KELL NVL+G +D + AK +LSPPG  +RERRLHQIMF DRDY+RVE+A +G+  DKSSR
Sbjct: 181 KELLCNVLKGNNDLKTAKMTLSPPGFTHRERRLHQIMFADRDYQRVERAELGK--DKSSR 238

Query: 240 PQTCSMLCF 248
           P    + C 
Sbjct: 239 PHVTVLDCI 247

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571573|ref|XP_003553951.1| PREDICTED: uncharacterized protein LOC100801859 [Glycine max]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/242 (76%), Positives = 208/242 (85%), Gaps = 3/242 (1%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MDDEYAKLIRRMNPPRVVIDNN C +ATVI+VDSVNKHGILL V+QV++D+NLVI KAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNNACENATVIQVDSVNKHGILLDVVQVISDMNLVITKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSDG WFMDVFNVID  G KIRDKEVIDYIQ+RLE + SF PSLR SVGV+PTEEHT IE
Sbjct: 61  SSDGVWFMDVFNVIDHKGNKIRDKEVIDYIQRRLENNPSFVPSLRESVGVVPTEEHTVIE 120

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            TGTDRPGL SE+CAVL DLHCNVV AEIWTHN RAAAVVHVTD S+G AIKDP RLSTI
Sbjct: 121 LTGTDRPGLLSEICAVLTDLHCNVVTAEIWTHNTRAAAVVHVTDDSSGCAIKDPSRLSTI 180

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVE--DKSS 238
           ++LL NVLRG +D + A+T+LSP G+ NR+RRLHQIMF DRDYER+E+A G+ E  D+  
Sbjct: 181 RDLLSNVLRGSNDPKTARTTLSPHGVTNRDRRLHQIMFADRDYERIERA-GQEELRDRDK 239

Query: 239 RP 240
           RP
Sbjct: 240 RP 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503685|ref|XP_003622131.1| Amino acid binding protein, putative [Medicago truncatula] gi|355497146|gb|AES78349.1| Amino acid binding protein, putative [Medicago truncatula]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/247 (74%), Positives = 205/247 (82%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MDDEYAKLIRRMNPPRVVIDNN C +ATVI+VDSVNKHGILL V+QV++D+NLVIKKAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNNACENATVIQVDSVNKHGILLDVVQVISDMNLVIKKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSDG WFMDVFNV D +G KI+DKEVIDYIQ+RLE + SF  S+R SVGV+PTEEHT IE
Sbjct: 61  SSDGVWFMDVFNVTDRNGNKIKDKEVIDYIQRRLEKNPSFETSMRESVGVVPTEEHTVIE 120

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            TGTDRPGL SE+CAVLADL CNVV AEIWTHN RAAAVVHVTD S+G AI+DP RLSTI
Sbjct: 121 LTGTDRPGLLSEICAVLADLRCNVVTAEIWTHNTRAAAVVHVTDDSSGCAIEDPSRLSTI 180

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRP 240
           ++LL NVLRG DD + AKT+LS PG+  R+RRLHQIMF DRDYERVE+A  R  DK   P
Sbjct: 181 RDLLCNVLRGSDDPKTAKTALSHPGVTYRDRRLHQIMFADRDYERVERAGLRERDKGPFP 240

Query: 241 QTCSMLC 247
                 C
Sbjct: 241 HVTVSDC 247

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449490057|ref|XP_004158495.1| PREDICTED: uncharacterized protein LOC101225681 [Cucumis sativus]

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 178/247 (72%), Positives = 205/247 (82%), Gaps = 2/247 (0%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MD+EY KLIRR+NPPRVVIDNN C DATVI+VDS+NKHGILL+V+QVL D+NL+I KAYI
Sbjct: 1   MDNEYDKLIRRLNPPRVVIDNNACKDATVIQVDSMNKHGILLKVVQVLMDMNLIITKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSDGGWFMDVFNVI  +G KIRD+EVI+ IQ RLE  ASF PSLR SVGVMP+E+HTSIE
Sbjct: 61  SSDGGWFMDVFNVITYEGNKIRDQEVINAIQMRLE--ASFVPSLRESVGVMPSEDHTSIE 118

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            +GTDRPGL SEVCAVLADLHCNVVNA++WTHN+RAAAVVHVTD +TG AI DP+RL TI
Sbjct: 119 LSGTDRPGLLSEVCAVLADLHCNVVNADVWTHNNRAAAVVHVTDDATGRAINDPQRLLTI 178

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRP 240
           KELL NVLRG  + ++AK +LSPPG+ + +RRLHQIM  DRDYER  K    VEDK+ RP
Sbjct: 179 KELLCNVLRGNGELKEAKMTLSPPGVTSTDRRLHQIMLADRDYERAVKTKLEVEDKNLRP 238

Query: 241 QTCSMLC 247
                 C
Sbjct: 239 HVTVFDC 245

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441712|ref|XP_004138626.1| PREDICTED: uncharacterized protein LOC101213097 [Cucumis sativus]

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 178/247 (72%), Positives = 205/247 (82%), Gaps = 2/247 (0%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MD+EY KLIRR+NPPRVVIDNN C DATVI+VDS+NKHGILL+V+QVL D+NL+I KAYI
Sbjct: 1   MDNEYDKLIRRLNPPRVVIDNNACKDATVIQVDSMNKHGILLKVVQVLMDMNLIITKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
           SSDGGWFMDVFNVI  +G KIRD+EVI+ IQ RLE  ASF PSLR SVGVMP+E+HTSIE
Sbjct: 61  SSDGGWFMDVFNVITYEGNKIRDQEVINAIQMRLE--ASFVPSLRESVGVMPSEDHTSIE 118

Query: 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
            +GTDRPGL SEVCAVLADLHCNVVNA++WTHN+RAAAVVHVTD +TG AI DP+RL TI
Sbjct: 119 LSGTDRPGLLSEVCAVLADLHCNVVNADVWTHNNRAAAVVHVTDDATGRAINDPQRLLTI 178

Query: 181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRP 240
           KELL NVLRG  + ++AK +LSPPG+ + +RRLHQIM  DRDYER  K    VEDK+ RP
Sbjct: 179 KELLCNVLRGNGELKEAKMTLSPPGVTSTDRRLHQIMLADRDYERAVKTKLEVEDKNLRP 238

Query: 241 QTCSMLC 247
                 C
Sbjct: 239 HVTVFDC 245

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503687|ref|XP_003622132.1| Amino acid binding protein, putative [Medicago truncatula] gi|355497147|gb|AES78350.1| Amino acid binding protein, putative [Medicago truncatula]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 183/280 (65%), Positives = 205/280 (73%), Gaps = 33/280 (11%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           MDDEYAKLIRRMNPPRVVIDNN C +ATVI+VDSVNKHGILL V+QV++D+NLVIKKAYI
Sbjct: 1   MDDEYAKLIRRMNPPRVVIDNNACENATVIQVDSVNKHGILLDVVQVISDMNLVIKKAYI 60

Query: 61  SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ---------------------------- 92
           SSDG WFMDVFNV D +G KI+DKEVIDYIQ+                            
Sbjct: 61  SSDGVWFMDVFNVTDRNGNKIKDKEVIDYIQRVGSCLFAISRMLQLTLIYVARSLWKGDF 120

Query: 93  -----RLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNA 147
                RLE + SF  S+R SVGV+PTEEHT IE TGTDRPGL SE+CAVLADL CNVV A
Sbjct: 121 TVLYHRLEKNPSFETSMRESVGVVPTEEHTVIELTGTDRPGLLSEICAVLADLRCNVVTA 180

Query: 148 EIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIM 207
           EIWTHN RAAAVVHVTD S+G AI+DP RLSTI++LL NVLRG DD + AKT+LS PG+ 
Sbjct: 181 EIWTHNTRAAAVVHVTDDSSGCAIEDPSRLSTIRDLLCNVLRGSDDPKTAKTALSHPGVT 240

Query: 208 NRERRLHQIMFDDRDYERVEKAVGRVEDKSSRPQTCSMLC 247
            R+RRLHQIMF DRDYERVE+A  R  DK   P      C
Sbjct: 241 YRDRRLHQIMFADRDYERVERAGLRERDKGPFPHVTVSDC 280

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.963	0.605	0.672	2e-86
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.886	0.529	0.610	6.5e-74
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.875	0.521	0.604	1.8e-71
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.830	0.498	0.545	5.1e-58
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.801	0.494	0.515	1.8e-55
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.805	0.487	0.482	5.2e-49
TAIR|locus:2145482	500	AT5G25320 [Arabidopsis thalian	0.705	0.384	0.475	1.9e-44
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.823	0.469	0.430	1.9e-44
TAIR|locus:2175458	301	ACR12 "ACT domain repeats 12"	0.283	0.255	0.269	4.6e-07
TAIR|locus:2015616	290	ACR11 "ACT domain repeats 11"	0.433	0.406	0.298	8.2e-07

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 181/269 (67%), Positives = 206/269 (76%)

Query:     2 DDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS 61
             DDEYAKLIRRMNPPRVVIDNN   DATVI+VDSVNKHG LL+V+QVL D+NLVIKKAYIS
Sbjct:     3 DDEYAKLIRRMNPPRVVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYIS 62

Query:    62 SDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS-FAPSLRSSVGVMPTEEHTSIE 120
             SDGGWFMDVF VID DG KIRD +V+DYIQ+R+E++A  F P LRSSVGVMPT+E+TSIE
Sbjct:    63 SDGGWFMDVFKVIDQDGNKIRDTQVLDYIQKRIESNAGWFIPPLRSSVGVMPTDEYTSIE 122

Query:   121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
               GTDRPGL SEV AVL DLHCNVVNAEIWTHN RAAAV+HVTD+ST  AI DP RLSTI
Sbjct:   123 LAGTDRPGLLSEVSAVLTDLHCNVVNAEIWTHNTRAAAVIHVTDNSTHSAITDPIRLSTI 182

Query:   181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEKAVGRVEDKSSRP 240
             KELL NV+R     R AKT  S     +RERRLHQIMFDDRDYE V++A       +SRP
Sbjct:   183 KELLCNVVRTNSGSRAAKTVFSCSDT-HRERRLHQIMFDDRDYEGVKRA----RTSASRP 237

Query:   241 QTCSMLCFMEWSTQEGRKLIR-NFIFDML 268
                 M    +++    R   R   +FD++
Sbjct:   238 SVTLMNIEKDYTVVTMRSKDRPKLVFDVV 266

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
 Identities = 149/244 (61%), Positives = 187/244 (76%)

Query:     1 MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
             MD+EY KLIRRMNPPRVVIDN++C  ATVI+VDS N++GILL+V+Q+L D+NL I KAYI
Sbjct:    11 MDNEYEKLIRRMNPPRVVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTITKAYI 70

Query:    61 SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIE 120
             SSDGGWFMDVFNV D DG K+ D+ V+DYIQ+ L  +A F+ S+RS VGV+P+ + T IE
Sbjct:    71 SSDGGWFMDVFNVTDQDGNKVTDEVVLDYIQKSLGPEACFSTSMRS-VGVIPSTDSTVIE 129

Query:   121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI 180
              TG DRPGL SE+ AVL  L C+V+NAEIWTHN RAAAV+ VTD  TG  I DP+RLS I
Sbjct:   130 LTGCDRPGLLSELSAVLTHLKCSVLNAEIWTHNTRAAAVMQVTDDLTGCGISDPERLSRI 189

Query:   181 KELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLHQIMFDDRDYE-RVEKAVGRVEDKSSR 239
             K LL NVL+G +  R+AKT +S  G ++ +RRLHQ+MF+DRDYE R+      ++D+  R
Sbjct:   190 KNLLRNVLKGSNTPREAKTVVSH-GEVHTDRRLHQMMFEDRDYEHRLVDDDSSIQDERQR 248

Query:   240 PQTC 243
             P  C
Sbjct:   249 PDVC 252

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 148/245 (60%), Positives = 181/245 (73%)

Query:     1 MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
             MDDE AK IRR+NPPRVVIDN  C D TVIKVDS NKHGILL+V+QVL ++NL IKKAYI
Sbjct:    11 MDDEIAKFIRRVNPPRVVIDNEVCKDVTVIKVDSANKHGILLEVVQVLTELNLTIKKAYI 70

Query:    61 SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS--FAPSLRSSVGVMPTEEHTS 118
             SSDGGWFMDVFNV D DG K+ D+ V++YI++ L  D S  F+PS+RS++GV  + ++T 
Sbjct:    71 SSDGGWFMDVFNVTDQDGNKVTDEIVLEYIRKSLGPDESSCFSPSMRSTIGVKQSVDYTV 130

Query:   119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLS 178
             +E TGTDRPGL SE+CAVL DL CNVVNAEIWTH  +AAAV+ VTD  T  AI DP+RLS
Sbjct:   131 VELTGTDRPGLLSELCAVLMDLQCNVVNAEIWTHRAKAAAVLQVTDEETCSAITDPERLS 190

Query:   179 TIKELLFNVLRGYDD---FRKAKTSLSPP-GIMNRERRLHQIMFDDRDYERVEKAVGRVE 234
              I++LL  VL G      FR+ KT++S      + +R+LHQ+MF DRDY+  E  V   E
Sbjct:   191 KIRKLLGYVLTGGSSGRRFREPKTTVSSALNETHTDRKLHQLMFADRDYDEWENNVDD-E 249

Query:   235 DKSSR 239
             DK  R
Sbjct:   250 DKCGR 254

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 127/233 (54%), Positives = 161/233 (69%)

Query:     2 DDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS 61
             D EY  L  R+NPP V IDN +C + T++KVDS+NK GILL+V+QVL D++L I KAYIS
Sbjct:    10 DPEYENLSSRINPPSVSIDNTSCKECTLVKVDSMNKPGILLEVVQVLTDLDLTITKAYIS 69

Query:    62 SDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS----SVGVMPTEEHT 117
             SDGGWFMDVF+V D  G K+ D + IDYI++ L      + S  +     VGV    +HT
Sbjct:    70 SDGGWFMDVFHVTDQQGNKVTDSKTIDYIEKVLGPKGHASASQNTWPGKRVGVHSLGDHT 129

Query:   118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRL 177
             SIE    DRPGL SEV AVLADL+ NVV AE WTHN R A V++V D++T  A+ DP+RL
Sbjct:   130 SIEIIARDRPGLLSEVSAVLADLNINVVAAEAWTHNRRIACVLYVNDNATSRAVDDPERL 189

Query:   178 STIKELLFNVLRGYD--DFRKAKTSLSPPGIMNRERRLHQIMFDDRDYERVEK 228
             S+++E L NVLRG +  D + A+TSLS  G  + +RRLHQ+ F DRDYE V K
Sbjct:   190 SSMEEQLNNVLRGCEEQDEKFARTSLSI-GSTHVDRRLHQMFFADRDYEAVTK 241

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 117/227 (51%), Positives = 162/227 (71%)

Query:     3 DEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS 62
             DEY KL+ RMN PRVVIDN  C+ AT++KVDS  ++GILL+ +Q+L D+NL IKKAYISS
Sbjct:     8 DEYEKLVIRMNTPRVVIDNGVCSSATIVKVDSSRRNGILLEAVQILTDLNLSIKKAYISS 67

Query:    63 DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFT 122
             DG W MDVF+V D +G K+ D+ V+ YI+Q +ET   +  ++  + G+      T++E T
Sbjct:    68 DGTWNMDVFHVTDLNGNKLNDQSVLRYIEQSIET-VYYGENIEVN-GL------TALELT 119

Query:   123 GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKE 182
             GTDR GL SE+ AVL+DL+C+VV+A++WTHN R A+V+++ D  +G  I D  R+S I+ 
Sbjct:   120 GTDRIGLLSEMFAVLSDLNCDVVDAKLWTHNGRVASVIYLKDCISGAPILDSHRISKIEG 179

Query:   183 LLFNVLRGYDDFRKA-KTSLSPPGIMNRERRLHQIMFDDRDYERVEK 228
              L NVL G +D   A KT ++   +M+ ERRLHQ+MF+DRDYER  K
Sbjct:   180 RLKNVLNGDNDVNSAAKTCVTVDSMMHIERRLHQLMFEDRDYERRSK 226

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 112/232 (48%), Positives = 154/232 (66%)

Query:     3 DEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS 62
             +EY KL+ RMN PRVVIDN  C ++TV+K+DS    GILL+ +Q+L D+NL IKKAYISS
Sbjct:     8 NEYEKLVVRMNMPRVVIDNGVCPNSTVVKIDSARSPGILLESVQLLTDMNLWIKKAYISS 67

Query:    63 DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFT 122
             DG W MDVF+V D +G K+ D+ +I YI++ +ET  S         G+      T++E T
Sbjct:    68 DGKWNMDVFHVSDLNGDKLTDENLIRYIEKSIET--SHYCKTEGYTGL------TALELT 119

Query:   123 GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK-DPKRLSTIK 181
             GTDR GL SEV AVLADL C+VV A+ WTHN R A++++V D ++G  I  D  R+  ++
Sbjct:   120 GTDRVGLLSEVFAVLADLECDVVEAKAWTHNGRIASMIYVKDGNSGTPIDGDSDRVQRVE 179

Query:   182 ELLFNVLRGYDDFRK-AKTSLSPPGIMNRERRLHQIMFDDRDYER---VEKA 229
               L N+L+  D ++   +T +S  G  + ERRLHQ MF DRDYE+   +EK+
Sbjct:   180 GQLRNLLKADDGYQNDTRTCVSYGGNTHMERRLHQRMFMDRDYEKKFDIEKS 231

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2145482 AT5G25320 [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 96/202 (47%), Positives = 136/202 (67%)

Query:     2 DDEYAKLIRRM-NPP-RVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAY 59
             D ++  L  R+  PP RV IDN++  D TV+KV+S NK G+LL+V+Q+L D+NL+I K+Y
Sbjct:    10 DPDFDNLGERIYGPPCRVYIDNDSIQDCTVVKVNSENKQGLLLEVVQILTDMNLIITKSY 69

Query:    60 ISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET---DASFAPSLRSSVGVMPTE-- 114
             ISSDGGWFMDVF+V D  G K+ DK VI++I+  + T   ++ F  +  ++   +  +  
Sbjct:    70 ISSDGGWFMDVFHVKDEHGNKLTDKSVINHIKHAIGTSRRESDFIKASEANNNSLEPQLA 129

Query:   115 ---EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAI 171
                EHT+IE TGTDRPGLFSE+ A  ADLHCNV+ A  W+HN R A + +V+D +T   I
Sbjct:   130 DHGEHTAIEMTGTDRPGLFSEIFAAFADLHCNVMEAHAWSHNARLACIAYVSDDNTHTPI 189

Query:   172 KDPKRLSTIKELLFNVLRGYDD 193
              DP RL++I++ L  V+R   D
Sbjct:   190 DDPSRLASIEDHLSTVIRATAD 211

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 103/239 (43%), Positives = 148/239 (61%)

Query:     1 MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
             +D E   L+ R+NPPRV +DN++  + T+IKVDS NK+GILL ++QVL D++LVI K YI
Sbjct:    10 IDSEIESLVERINPPRVCVDNDSDPECTLIKVDSANKYGILLDMVQVLADLDLVISKCYI 69

Query:    61 SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL--ETDASFAPSLRSSVG--VMP---T 113
             SSDG WFMDVF+V D  G K+ D+ +I YIQQ +           ++S++   V     +
Sbjct:    70 SSDGEWFMDVFHVTDQLGNKLTDRSLILYIQQAICSSRTGGITKEMQSNLKREVQQRHVS 129

Query:   114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 173
              EHT+ E TG +RPGL SE+ AVL+D+ C+V  A  WTH++RAA V+++ D   G  I D
Sbjct:   130 TEHTAFEITGINRPGLLSEISAVLSDIGCHVTAAVAWTHHERAAMVIYLEDGFNGGPIID 189

Query:   174 PKRLSTIKELLFNVLRGYD---DF-----RKAKTSLSPPGIMNRERRLHQIMFDDRDYE 224
             P R + +K+ L  V+  +    D      R  +    P G  + ERRLH++M+ + DYE
Sbjct:   190 PIRKAQVKDHLDTVMEAHHIVGDVSHVVVRVVEAKGVPVGWAHTERRLHELMYGEGDYE 248

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2175458 ACR12 "ACT domain repeats 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
 Identities = 21/78 (26%), Positives = 46/78 (58%)

Query:    15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
             P V+ID +   +AT++++   N+ G L+  ++ L D+ L + K  +S++G      F++ 
Sbjct:    95 PMVMIDQDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSIT 154

Query:    75 DCD-GKKIRDKEVIDYIQ 91
               D G+K+ D ++++ I+
Sbjct:   155 KRDTGRKVEDPDLLEQIR 172

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2015616 ACR11 "ACT domain repeats 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
 Identities = 40/134 (29%), Positives = 68/134 (50%)

Query:    15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
             P V+ID ++  DATV++V   ++ G LL  +  L ++ L + KA +  D     + F + 
Sbjct:    84 PVVIIDQDSDPDATVLEVTFGDRLGALLDTMNALKNLGLNVVKANVYLDSSGKHNKFAIT 143

Query:    75 DCD-GKKIRDKEVIDYIQ-----QRLE--TDASFAPSLRSSVGVMPTEE--------HTS 118
               D G+K+ D E+++ I+       LE   ++S   ++ ++ GV+P  E        H +
Sbjct:   144 RADSGRKVEDPELLEAIRLTVINNLLEFHPESSSQLAMGAAFGVLPPTEPIDVDIATHIT 203

Query:   119 IEFTGTDRPGLFSE 132
             IE  G DR  LF E
Sbjct:   204 IEDDGPDRSLLFIE 217

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	272
cd04925	74	cd04925, ACT_ACR_2, ACT domain-containing protein	5e-36
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	7e-31
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	7e-21
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	1e-17
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	7e-12
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	1e-10
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	2e-10
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	2e-09
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	2e-08
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	2e-08
pfam01842	66	pfam01842, ACT, ACT domain	4e-07
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	1e-06
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	1e-06
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	3e-06
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	3e-06
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	5e-06
PRK05007	884	PRK05007, PRK05007, PII uridylyl-transferase; Prov	1e-05
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	1e-05
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	2e-05
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	1e-04
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	2e-04
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	2e-04
pfam13740	76	pfam13740, ACT_6, ACT domain	2e-04
PRK04374	869	PRK04374, PRK04374, PII uridylyl-transferase; Prov	0.001
cd04928	68	cd04928, ACT_TyrKc, Uncharacterized, N-terminal AC	0.001
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	0.002
PRK03059	856	PRK03059, PRK03059, PII uridylyl-transferase; Prov	0.003
COG0317	701	COG0317, SpoT, Guanosine polyphosphate pyrophospho	0.004
cd04876	71	cd04876, ACT_RelA-SpoT, ACT domain found C-termina	0.004

>gnl|CDD|153197 cd04925, ACT_ACR_2, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  122 bits (309), Expect = 5e-36
 Identities = 49/74 (66%), Positives = 56/74 (75%)

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
           T+IE TGTDRPGL SEV AVLADLHCNVV A  WTHN R A V++V D  TG  I DP R
Sbjct: 1   TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIR 60

Query: 177 LSTIKELLFNVLRG 190
           L++I++ L NVLRG
Sbjct: 61  LASIEDRLDNVLRG 74

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 74

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  109 bits (274), Expect = 7e-31
 Identities = 41/72 (56%), Positives = 52/72 (72%)

Query: 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEV 86
           T++KVDS  K GILL+ +QVL D++L I KAYISSDGGWFMDVF+V D  G K+ D  +
Sbjct: 1  CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSL 60

Query: 87 IDYIQQRLETDA 98
          I YI++ L T  
Sbjct: 61 IAYIEKSLGTSR 72

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 83.3 bits (207), Expect = 7e-21
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
           T +E T  DRPGL ++V  VLA+L  N+ +A+I T  +RA  V +VTD + G  + DP+R
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPER 58

Query: 177 LSTIKELLFNVL 188
              ++  L   L
Sbjct: 59  QEALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 74.9 bits (185), Expect = 1e-17
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
           T +E    DRPGL +++  VLADL  N+ +A I T  +RA  V +VTD S G  + DP+R
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD-SDGRPL-DPER 58

Query: 177 LSTIKELLFNVL 188
           ++ ++E L + L
Sbjct: 59  IARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 59.1 bits (144), Expect = 7e-12
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVI 87
          TV++V + ++ G+L  + +VL D+ L I  A IS+ G   +DVF V D DG+ + D E I
Sbjct: 1  TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL-DPERI 59

Query: 88 DYIQQRLET 96
            +++ LE 
Sbjct: 60 ARLEEALED 68

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 61.0 bits (149), Expect = 1e-10
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 173
              T IE  G DRPGL  ++   L+DL+ N+ +A I T+ +RA  V +VTD   G  I +
Sbjct: 841 NRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTD-LFGLKITN 899

Query: 174 PKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGI 206
             R + I+  L   L   +   +A+ +  P  +
Sbjct: 900 EARQAAIRRALLAALAEGEA--EARAARPPGAV 930

Length = 931

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 21/151 (13%)

Query: 52  NLVIKKAYISSDGGWFMDVFNVIDCDGKKI---RDKEVIDYIQQRLETDASFAPSLRS-- 106
           ++V  + + + DG + +D F V++ DG  +   R   +   + + L       P  R   
Sbjct: 711 SIVDAQIFTTRDG-YALDTFIVLEPDGFPVEEDRRAALRGELIEAL-LSGKAQPPRRRRI 768

Query: 107 -----------SVGVMPTE--EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN 153
                       V ++PT   + T +E    DRPGL + +  V ADL  ++ +A+I T  
Sbjct: 769 PRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFG 828

Query: 154 DRAAAVVHVTDHSTGYAIKDPKRLSTIKELL 184
           +R   V  VTD + G A+    R S ++ LL
Sbjct: 829 ERVEDVFIVTD-ADGQALNAELRQSLLQRLL 858

Length = 867

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 22/172 (12%)

Query: 15  PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNV 73
           P  +ID    +  T + + + ++ G+  +V   L  ++L +  A + ++  G  +D F V
Sbjct: 656 PLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVV 715

Query: 74  IDCDGKKIRD-------KEVIDYIQQRLETDASFAPSLRS------------SVGVMPT- 113
            D  G             + +  +   L  D     + R+             V ++ T 
Sbjct: 716 QDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTA 775

Query: 114 -EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164
             + T +E    DRPGL + V   L +L  ++ +A+I T  ++A  V +VTD
Sbjct: 776 SRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTD 827

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 31/81 (38%), Positives = 48/81 (59%)

Query: 14  PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
           PPRV IDN      TVI+V+  ++ G+L  + + L+D+NL I  A+I++ G   +DVF V
Sbjct: 830 PPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYV 889

Query: 74  IDCDGKKIRDKEVIDYIQQRL 94
            D  G KI ++     I++ L
Sbjct: 890 TDLFGLKITNEARQAAIRRAL 910

Length = 931

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 49.8 bits (120), Expect = 2e-08
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 125 DRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKEL 183
           DRPGLF+ +   L  L  N+++A I+T  D  A     V D   G  I + +RL+ I+E 
Sbjct: 10  DRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREA 68

Query: 184 LFNVL 188
           L + L
Sbjct: 69  LEDAL 73

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA--VVHVTDHS 166
           T +E    DRPGL +EV   LAD   N+ +    T  D+A    +V V D  
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEE 52

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 5/84 (5%)

Query: 14  PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
           PPRV I N     AT+++V ++++ G+L +V + L ++ L I+ A I++ G    DVF V
Sbjct: 766 PPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYV 825

Query: 74  IDCDGKKIRDKEVIDYIQQRLETD 97
            D  G K+ D+E     +QRL   
Sbjct: 826 TDLFGLKLTDEE-----EQRLLEV 844

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 22/177 (12%)

Query: 27  ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNVIDCDGKKIRDK- 84
            T I + + ++H      +  ++ +NL I  A I +S   + +D + V+D DG+ I D  
Sbjct: 704 GTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNP 763

Query: 85  EVIDYIQQRLETDASFAPSLRSSVG----------VMPTE---------EHTSIEFTGTD 125
             I+ I++ L           + +             PT+           T +E    D
Sbjct: 764 ARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPD 823

Query: 126 RPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKE 182
           RPGL + +  +  +   ++ NA+I T  +R   V  +TD +    + DP+  S +++
Sbjct: 824 RPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITD-ADNQPLSDPQLCSRLQD 879

Length = 895

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 95  ETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND 154
           + D +  P L + V   P    T +     D PGLFS +    A    N+V+A I+T  D
Sbjct: 712 DADDAGRP-LATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTD 770

Query: 155 -RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190
            RA     + D + G    +P+RL+ + + + + L G
Sbjct: 771 GRALDTFWIQD-AFGRDEDEPRRLARLAKAIEDALSG 806

Length = 931

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163
           +  +G DRPGL ++V +VLA+   N+ + E  T  D   A + + 
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIV 45

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 23/101 (22%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 3   DEYAKLIRRMNP---------PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNL 53
           D+Y  +I+R  P          +V I N+     TV+++ + ++ G+L ++ ++  + +L
Sbjct: 781 DDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDL 840

Query: 54  VIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL 94
            ++ A I++ G    DVF + D D + + D ++   +Q  +
Sbjct: 841 SLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAI 881

Length = 895

>gnl|CDD|235329 PRK05007, PRK05007, PII uridylyl-transferase; Provisional

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 18/160 (11%)

Query: 15  PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNV 73
           P V++        T I + S ++  +   V   L+  NL +  A I +S  G  MD F V
Sbjct: 689 PLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIV 748

Query: 74  IDCDGKKI---RDKEVIDYIQQRLETDASFAPSLR------------SSVGVMPTEEH-- 116
           ++ DG  +   R + +   ++Q L   +   P  R            + V  +PT     
Sbjct: 749 LEPDGSPLSQDRHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRR 808

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRA 156
           + +E    D+PGL + V  + ADL  ++  A I T  +R 
Sbjct: 809 SYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERV 848

Length = 884

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 17/159 (10%)

Query: 15  PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNV 73
             V I N      T I +   ++  + L+V+  +    L I  A I +S  G+ +D F V
Sbjct: 665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIV 724

Query: 74  IDCDGKKI---RDKEVIDYIQQRLETDASFAPSLR-----------SSVGVMPTE--EHT 117
            + +GK +   R +++   + + L T+     +L            + V  +  E  E T
Sbjct: 725 TELNGKLLEFDRRRQLEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQT 784

Query: 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRA 156
            +E    DR GL ++V  V ++L+ N++NA+I T  ++A
Sbjct: 785 EMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKA 823

Length = 854

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 27/83 (32%), Positives = 44/83 (53%)

Query: 14  PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
           PPRV I      D TV++V ++++ G+L  +  V  D+ L +  A I++ G    DVF V
Sbjct: 778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIV 837

Query: 74  IDCDGKKIRDKEVIDYIQQRLET 96
            D DG+ +  +     +Q+ LE 
Sbjct: 838 TDADGQALNAELRQSLLQRLLEA 860

Length = 867

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVI 87
          TV+++ ++++ G+L  V +VL ++ L I  A I++ G    DVF V D DG+   D E  
Sbjct: 1  TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-LDPERQ 59

Query: 88 DYIQQRLET 96
          + ++  L  
Sbjct: 60 EALRAALGE 68

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 36 NKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL 94
          ++ G+  ++   L+ + L I  A I ++  G+ +D F V+D DG+ I ++E +  I++ L
Sbjct: 10 DRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREAL 69

Query: 95 E 95
          E
Sbjct: 70 E 70

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRL 177
            +E    DR GL S+V  V  +    V  AEI T  D A  V +VTD + G  + DPK +
Sbjct: 3   RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD-ANGNPV-DPKTI 60

Query: 178 STIKE 182
             +++
Sbjct: 61  EAVRQ 65

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|205914 pfam13740, ACT_6, ACT domain

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163
           I  TG DRPGL + +  VLA+  CN++++            + V+
Sbjct: 5   ITATGPDRPGLTASLTRVLAEHGCNILDSRQAVIGGELTLGMLVS 49

ACT domains bind to amino acids and regulate associated enzyme domains. Length = 76

>gnl|CDD|179839 PRK04374, PRK04374, PII uridylyl-transferase; Provisional

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 44/168 (26%), Positives = 64/168 (38%), Gaps = 25/168 (14%)

Query: 16  RVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNVI 74
           R V DN    DA  + V S ++ G+   ++  L+     I +A +  +      DVF V+
Sbjct: 683 RAVPDN----DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVL 738

Query: 75  DCDGKKIRDKEVID-YIQQRLETDAS-----------------FAPSLRSSVGVMPTEEH 116
             D     D + +   ++Q L  D                   FAP  R           
Sbjct: 739 PQDTYADGDPQRLAAALRQVLAGDLQKVRPARRAVPRQLRHFRFAP--RVEFSESAGGRR 796

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164
           T I     DRPGL ++V  VL   H  V +A I T  +RA     +TD
Sbjct: 797 TRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITD 844

Length = 869

>gnl|CDD|153200 cd04928, ACT_TyrKc, Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

 Score = 36.0 bits (83), Expect = 0.001
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNVI 74
          I   + +K  +L Q+  +L D+ L I +A+  S+D G  +D+F V 
Sbjct: 4  ITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVT 49

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 68

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 36 NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLE 95
          ++ G+L  V +V  +  L + +A IS+ G   ++VF V D +G  + D + I+ ++Q + 
Sbjct: 10 DRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG 68

Query: 96 TD 97
            
Sbjct: 69 PA 70

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|235101 PRK03059, PRK03059, PII uridylyl-transferase; Provisional

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 28/145 (19%), Positives = 54/145 (37%), Gaps = 24/145 (16%)

Query: 65  GWFMDVFNVIDCDGKKIRDKEVIDYIQ----QRLETDASFAPSLRSS----VGVMPTEEH 116
           G+ +D F V+D   + +  +++I+ ++    +RL   A      +      V   P    
Sbjct: 717 GYALDTFQVLD-PEEDVHYRDIINLVEHELAERLAEQAPLPEPSKGRLSRQVKHFPITPR 775

Query: 117 TSIE-----------FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDH 165
             +             +  DRPGL   +  VLA+   +V  A+I T  +R      +   
Sbjct: 776 VDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLI--- 832

Query: 166 STGYAIKDPKRLSTIKELLFNVLRG 190
             G  + D +    ++  L + L  
Sbjct: 833 -DGSGLSDNRLQIQLETELLDALAV 856

Length = 856

>gnl|CDD|223394 COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPK 175
             IE    DR GL  +V  VLA+   NV+   + T  +    A +  T       +K+  
Sbjct: 628 VDIEIRAYDRSGLLRDVSQVLANEKINVLG--VNTRSDKDQFATMQFT-----IEVKNLN 680

Query: 176 RLSTIKELL 184
            L  +   L
Sbjct: 681 HLGRVLARL 689

Length = 701

>gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains

 Score = 34.7 bits (81), Expect = 0.004
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLS 178
           I     DRPGL +++  V+A+   N+++      +D   A + +T       ++D + L+
Sbjct: 1   IRVEAIDRPGLLADITTVIAEEKINILSVNT-RTDDDGLATIRLT-----LEVRDLEHLA 54

Query: 179 TI 180
            I
Sbjct: 55  RI 56

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes in E. coli, a bifunctional Rel/Spo protein has been discovered in most gram-positive organisms studied so far. These bifunctional Rel/Spo homologs (rsh) appear to modulate (p)ppGpp levels through two distinct active sites that are controlled by a reciprocal regulatory mechanism ensuring inverse coupling of opposing activities. In studies with the Streptococcus equisimilis Rel/Spo homolog, the C-terminal domain appears to be involved in this reciprocal regulation of the two opposing catalytic activities present in the N-terminal domain, ensuring that both synthesis and degradation activities are not coinduced. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	272
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.98
PRK05007	884	PII uridylyl-transferase; Provisional	99.97
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.96
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.96
PRK03381	774	PII uridylyl-transferase; Provisional	99.95
PRK04374	869	PII uridylyl-transferase; Provisional	99.95
PRK05092	931	PII uridylyl-transferase; Provisional	99.95
PRK03059	856	PII uridylyl-transferase; Provisional	99.94
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.94
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.86
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.86
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.82
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.74
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.72
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.71
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.65
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.61
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.59
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.57
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.55
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.54
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.51
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.44
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.39
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.38
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.37
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.37
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.37
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.33
PRK05007	884	PII uridylyl-transferase; Provisional	99.32
PRK04374	869	PII uridylyl-transferase; Provisional	99.32
PRK03381	774	PII uridylyl-transferase; Provisional	99.31
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.29
PRK05092	931	PII uridylyl-transferase; Provisional	99.26
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.23
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.16
PRK03059	856	PII uridylyl-transferase; Provisional	99.16
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	99.06
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	98.98
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.92
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	98.87
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.74
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.63
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.62
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.6
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.52
COG4747	142	ACT domain-containing protein [General function pr	98.47
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.42
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.4
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.24
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.2
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	98.15
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.1
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.08
PRK00194	90	hypothetical protein; Validated	98.04
PRK11589	190	gcvR glycine cleavage system transcriptional repre	98.02
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.98
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.98
PRK00194	90	hypothetical protein; Validated	97.97
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.94
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.93
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.85
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	97.84
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.81
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.78
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.73
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.64
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.63
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.55
COG3830	90	ACT domain-containing protein [Signal transduction	97.52
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.49
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.47
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.46
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	97.44
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.38
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	97.37
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	97.36
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.36
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.31
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.29
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	97.27
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.24
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	97.16
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	97.16
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.15
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	97.15
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	97.14
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	97.12
COG3830	90	ACT domain-containing protein [Signal transduction	97.11
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	97.09
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	97.09
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.06
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	97.03
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	97.02
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.99
PRK08577	136	hypothetical protein; Provisional	96.96
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.96
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	96.95
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.86
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.86
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.83
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	96.83
PRK00227	693	glnD PII uridylyl-transferase; Provisional	96.83
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.77
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.59
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.59
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.58
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.57
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.56
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.55
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.54
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.49
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.48
PRK07334	403	threonine dehydratase; Provisional	96.44
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.44
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.34
cd02116	60	ACT ACT domains are commonly involved in specifica	96.32
PRK04435	147	hypothetical protein; Provisional	96.26
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.24
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.22
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.15
cd02116	60	ACT ACT domains are commonly involved in specifica	96.11
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.05
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	96.04
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.96
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	95.95
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.83
PRK08577	136	hypothetical protein; Provisional	95.83
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	95.79
PRK06635	404	aspartate kinase; Reviewed	95.63
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	95.58
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	95.56
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	95.54
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	95.44
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	95.42
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.33
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	95.32
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	95.14
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.12
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	95.07
PRK04435	147	hypothetical protein; Provisional	95.07
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	95.06
PRK08210	403	aspartate kinase I; Reviewed	94.92
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	94.91
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	94.79
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	94.78
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	94.74
PRK11899	279	prephenate dehydratase; Provisional	94.69
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	94.59
PRK07334	403	threonine dehydratase; Provisional	94.4
PRK06291	465	aspartate kinase; Provisional	94.29
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	94.23
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	94.1
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.04
COG4747	142	ACT domain-containing protein [General function pr	93.84
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	93.82
COG1707	218	ACT domain-containing protein [General function pr	93.66
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	93.45
PRK06382	406	threonine dehydratase; Provisional	93.43
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	93.39
PRK08818	370	prephenate dehydrogenase; Provisional	93.25
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	93.03
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	92.85
COG1707	218	ACT domain-containing protein [General function pr	92.85
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	92.77
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	92.49
PRK09034	454	aspartate kinase; Reviewed	92.23
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	92.07
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	91.96
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	91.91
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	91.72
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	91.68
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	91.44
PLN02551	521	aspartokinase	91.4
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	91.39
PRK06349	426	homoserine dehydrogenase; Provisional	91.38
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	91.15
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	90.93
PRK09181	475	aspartate kinase; Validated	90.92
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	90.85
PRK06545	359	prephenate dehydrogenase; Validated	90.64
PRK07431	587	aspartate kinase; Provisional	90.52
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	90.39
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	90.18
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	90.04
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	89.33
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	88.93
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	88.83
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	88.3
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	87.67
PRK08198	404	threonine dehydratase; Provisional	87.52
PRK07431	587	aspartate kinase; Provisional	87.51
PRK09084	448	aspartate kinase III; Validated	87.41
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	86.9
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	86.39
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	86.36
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	85.98
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	85.79
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	84.98
PRK11899	279	prephenate dehydratase; Provisional	84.65
PLN02317	382	arogenate dehydratase	84.61
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	84.23
PRK06382	406	threonine dehydratase; Provisional	84.02
COG2150	167	Predicted regulator of amino acid metabolism, cont	83.57
COG2150	167	Predicted regulator of amino acid metabolism, cont	82.07
PRK06545	359	prephenate dehydrogenase; Validated	81.85
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	81.55
PRK11898	283	prephenate dehydratase; Provisional	81.33
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	81.25
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	81.08
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	80.92
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	80.5
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	80.46
cd04868	60	ACT_AK-like ACT domains C-terminal to the catalyti	80.12

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.98  E-value=7.1e-31  Score=270.89  Aligned_cols=175  Identities=25%  Similarity=0.380  Sum_probs=149.6

Q ss_pred             cCCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcH---HHH
Q 024087           12 MNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDK---EVI   87 (272)
Q Consensus        12 ~~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~---~~~   87 (272)
                      ..+|.|.+++..+.++|+|.|+++||||||++++++|+.+|++|.+|+|+| .+|+++|+|+|++++|.++.++   .+.
T Consensus       662 ~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~  741 (854)
T PRK01759        662 RGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLE  741 (854)
T ss_pred             CCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHH
Confidence            357899999999999999999999999999999999999999999999998 8999999999999999988542   234


Q ss_pred             HHHHHHHhcccCCCC-----------Cccceeee--CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC
Q 024087           88 DYIQQRLETDASFAP-----------SLRSSVGV--MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND  154 (272)
Q Consensus        88 ~~I~~aL~~~~~~~~-----------~~~~~v~~--~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~  154 (272)
                      +.|+++|........           ..+..|.+  +++..+|+|||.+.||||||++|+++|.++|++|+.|+|+|.|+
T Consensus       742 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~ge  821 (854)
T PRK01759        742 QALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGE  821 (854)
T ss_pred             HHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCc
Confidence            444555544321111           01223444  77889999999999999999999999999999999999999999


Q ss_pred             eeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccc
Q 024087          155 RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (272)
Q Consensus       155 rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L  188 (272)
                      ||+|+|||+| .+|.|++++++ +.|+++|..+|
T Consensus       822 rv~D~Fyv~~-~~g~~l~~~~~-~~l~~~L~~~l  853 (854)
T PRK01759        822 KAEDFFILTN-QQGQALDEEER-KALKSRLLSNL  853 (854)
T ss_pred             eEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHh
Confidence            9999999999 78999998766 99999998776

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.97  E-value=7.8e-31  Score=271.38  Aligned_cols=176  Identities=22%  Similarity=0.337  Sum_probs=151.4

Q ss_pred             CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcH---HHHH
Q 024087           13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDK---EVID   88 (272)
Q Consensus        13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~---~~~~   88 (272)
                      .+|.|.+++..+.++|+|+|+++||||||++++++|+.+|++|.+|+|+| .+|+++|+|+|++++|.++.++   ++.+
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~  766 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRK  766 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999999998 6789999999999999988542   2445


Q ss_pred             HHHHHHhcccCCCC------------Cccceeee--CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC
Q 024087           89 YIQQRLETDASFAP------------SLRSSVGV--MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND  154 (272)
Q Consensus        89 ~I~~aL~~~~~~~~------------~~~~~v~~--~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~  154 (272)
                      .|+++|.......+            ..+..|.+  +.+..+|+|||.+.|||||||+|+++|.++|++|++|+|+|+|+
T Consensus       767 ~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~ge  846 (884)
T PRK05007        767 ALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGE  846 (884)
T ss_pred             HHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCc
Confidence            55555644321110            01223444  77899999999999999999999999999999999999999999


Q ss_pred             eeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087          155 RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (272)
Q Consensus       155 rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~  190 (272)
                      ||+|+|||++ .+|.|++ +++++.|+++|..+|..
T Consensus       847 ra~DvFyV~~-~~g~~l~-~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        847 RVEDLFILAT-ADRRALN-EELQQELRQRLTEALNP  880 (884)
T ss_pred             eEEEEEEEEc-CCCCcCC-HHHHHHHHHHHHHHHhh
Confidence            9999999999 7899998 77889999999999865

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.96  E-value=5.2e-28  Score=250.60  Aligned_cols=178  Identities=23%  Similarity=0.408  Sum_probs=148.6

Q ss_pred             CCCEEEEEeCCC---CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCC-cHHHH
Q 024087           13 NPPRVVIDNNTC---ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIR-DKEVI   87 (272)
Q Consensus        13 ~~p~V~i~n~~~---~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~-~~~~~   87 (272)
                      ..|.|.+.+...   .++++|+|+++||||||+++|++|+.+|+||.+|+|+| .+|+++|+|+|++++|.++. +++.+
T Consensus       687 ~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~  766 (895)
T PRK00275        687 GGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARI  766 (895)
T ss_pred             CCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHH
Confidence            357777887775   58999999999999999999999999999999999986 78999999999999999854 33444


Q ss_pred             HHHH----HHHhcccCCCC-------------Cccceeee--CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEE
Q 024087           88 DYIQ----QRLETDASFAP-------------SLRSSVGV--MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAE  148 (272)
Q Consensus        88 ~~I~----~aL~~~~~~~~-------------~~~~~v~~--~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~  148 (272)
                      ++|+    ++|.+...+..             .....|.+  +++..+|.|+|.+.||||||++|+++|+++|+||..|+
T Consensus       767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak  846 (895)
T PRK00275        767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK  846 (895)
T ss_pred             HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence            4454    44544322110             01123333  67788999999999999999999999999999999999


Q ss_pred             EEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccCc
Q 024087          149 IWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY  191 (272)
Q Consensus       149 i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~~  191 (272)
                      |+|.|++|.|+|||++ ..|.|+.++++++.|+++|.++|...
T Consensus       847 I~T~g~~v~D~F~V~d-~~g~~l~~~~~~~~l~~~L~~~L~~~  888 (895)
T PRK00275        847 IATLGERVEDVFFITD-ADNQPLSDPQLCSRLQDAICEQLDAR  888 (895)
T ss_pred             EEecCCEEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999 78999998889999999999999653

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.96  E-value=1.8e-27  Score=246.04  Aligned_cols=174  Identities=24%  Similarity=0.315  Sum_probs=148.6

Q ss_pred             CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-ecCCEEEEEEEEEcCCCCCCCcHHHHH---
Q 024087           13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS-SDGGWFMDVFNVIDCDGKKIRDKEVID---   88 (272)
Q Consensus        13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~-T~gg~~~dvF~V~d~~G~~~~~~~~~~---   88 (272)
                      ..|.|.+.+....++|+|+|+++||||||++++++|+.+|+||.+|+|+ |.+|+++|+|+|++.+|.++.+++..+   
T Consensus       654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~  733 (850)
T TIGR01693       654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELL  733 (850)
T ss_pred             CCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence            4688999987778999999999999999999999999999999999999 589999999999999999887765444   


Q ss_pred             -HHHHHHhcccCCC--C-------------Cccceeee--CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE
Q 024087           89 -YIQQRLETDASFA--P-------------SLRSSVGV--MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW  150 (272)
Q Consensus        89 -~I~~aL~~~~~~~--~-------------~~~~~v~~--~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~  150 (272)
                       .|.++|.......  +             ..+..|.+  +++..+|+|+|.|.||||||++|+++|.++|++|.+|+|.
T Consensus       734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~  813 (850)
T TIGR01693       734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT  813 (850)
T ss_pred             HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence             4455554432111  0             01123444  7788899999999999999999999999999999999999


Q ss_pred             eeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccc
Q 024087          151 THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (272)
Q Consensus       151 T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L  188 (272)
                      |.|+++.|+|||++ ..|.|+++ ++++.|+++|.++|
T Consensus       814 t~~~~~~d~F~v~~-~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       814 TFGEKAEDVFYVTD-LFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             ecCccceeEEEEEC-CCCCCCCH-HHHHHHHHHHHHHh
Confidence            99999999999999 78999987 78899999998765

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=1.6e-26  Score=236.51  Aligned_cols=170  Identities=19%  Similarity=0.211  Sum_probs=146.5

Q ss_pred             cCCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHH
Q 024087           12 MNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQ   91 (272)
Q Consensus        12 ~~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~   91 (272)
                      ..+|.|.+.+.. .+.++|+|+++||||||++++++|+.+|+||.+|+|+|.+|+++|+|+|.+++|.....+++.+.|+
T Consensus       585 ~~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~  663 (774)
T PRK03381        585 DGGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLR  663 (774)
T ss_pred             cCCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHH
Confidence            367899999988 8999999999999999999999999999999999999999999999999999888655566778888


Q ss_pred             HHHhcccCC--C--CC-------------ccceeee--CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee
Q 024087           92 QRLETDASF--A--PS-------------LRSSVGV--MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH  152 (272)
Q Consensus        92 ~aL~~~~~~--~--~~-------------~~~~v~~--~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~  152 (272)
                      ++|.+....  .  ..             .+..+.+  +.+..+|+|+|.+.||||||++|+++|+++|+||..|+|.|.
T Consensus       664 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~  743 (774)
T PRK03381        664 RALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATL  743 (774)
T ss_pred             HHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec
Confidence            888774221  0  00             0112333  556679999999999999999999999999999999999999


Q ss_pred             CCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhc
Q 024087          153 NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF  185 (272)
Q Consensus       153 g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~  185 (272)
                      |+++.|+|||+| ..|.+++++  ++.|+++|.
T Consensus       744 g~~a~D~F~V~d-~~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        744 GADVVDVFYVTG-AAGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             CCeEEEEEEEEC-CCCCcCchH--HHHHHHHhh
Confidence            999999999999 789999876  788988875

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=2e-26  Score=237.84  Aligned_cols=174  Identities=24%  Similarity=0.311  Sum_probs=144.7

Q ss_pred             CCEEEEEe-CCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCc-HHHHHHH
Q 024087           14 PPRVVIDN-NTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRD-KEVIDYI   90 (272)
Q Consensus        14 ~p~V~i~n-~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~-~~~~~~I   90 (272)
                      .|.|.+.. ....+.+.|+|+++||||||++++++|+.+|+||.+|+|+| .+|+++|+|+|++++|..... +++.+.|
T Consensus       676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l  755 (869)
T PRK04374        676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAAL  755 (869)
T ss_pred             CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHH
Confidence            55666554 67789999999999999999999999999999999999998 899999999999988864211 2356666


Q ss_pred             HHHHhcccCCC---C----------Cccceeee--CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe
Q 024087           91 QQRLETDASFA---P----------SLRSSVGV--MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR  155 (272)
Q Consensus        91 ~~aL~~~~~~~---~----------~~~~~v~~--~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r  155 (272)
                      +++|.+...+.   .          ..+.+|.+  +++..+|+|+|.+.||||||++|+++|+++|++|..|+|+|.|++
T Consensus       756 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~  835 (869)
T PRK04374        756 RQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGER  835 (869)
T ss_pred             HHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCE
Confidence            77776642210   0          01223444  677789999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087          156 AAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (272)
Q Consensus       156 v~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~  189 (272)
                      |.|+|||+| ..|.++.++++ +.|+++|..+|.
T Consensus       836 a~D~F~V~d-~~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        836 AEDQFQITD-EHDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             EEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhc
Confidence            999999999 78999987766 999999998874

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=6.6e-26  Score=236.24  Aligned_cols=178  Identities=24%  Similarity=0.347  Sum_probs=152.0

Q ss_pred             CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHH
Q 024087           13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQ   91 (272)
Q Consensus        13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~   91 (272)
                      .++.|.+.+....++++|+|+++||||||++++++|+.+|+||.+|+|+| .+|+++|+|+|++++|.+..+++.++.|+
T Consensus       718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~  797 (931)
T PRK05092        718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA  797 (931)
T ss_pred             CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence            56888899998899999999999999999999999999999999999998 79999999999999998776655555555


Q ss_pred             HHHhccc----CCC-------CC--------ccceeee--CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE
Q 024087           92 QRLETDA----SFA-------PS--------LRSSVGV--MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW  150 (272)
Q Consensus        92 ~aL~~~~----~~~-------~~--------~~~~v~~--~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~  150 (272)
                      +.|....    .+.       .+        ....|.+  +++..+|.|+|.+.||||||++|+++|+++|+||.+|+|.
T Consensus       798 ~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~  877 (931)
T PRK05092        798 KAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA  877 (931)
T ss_pred             HHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE
Confidence            5553322    110       01        0112333  5677899999999999999999999999999999999999


Q ss_pred             eeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccCc
Q 024087          151 THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY  191 (272)
Q Consensus       151 T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~~  191 (272)
                      |.|+++.|+|||++ ..|.++.++++++.|++.|..+|.+.
T Consensus       878 T~~~~~~D~F~v~d-~~g~~i~~~~~~~~l~~~L~~~L~~~  917 (931)
T PRK05092        878 TYGERAVDVFYVTD-LFGLKITNEARQAAIRRALLAALAEG  917 (931)
T ss_pred             EcCCEEEEEEEEeC-CCCCcCCCHHHHHHHHHHHHHHhcCc
Confidence            99999999999999 78999999989999999999999763

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=2.1e-25  Score=230.37  Aligned_cols=172  Identities=19%  Similarity=0.338  Sum_probs=141.3

Q ss_pred             CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHH---
Q 024087           13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVID---   88 (272)
Q Consensus        13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~---   88 (272)
                      ..|.|.+.+....+.+.|+|+++||||||++++++|+.+|+||.+|+|+| .+|+++|+|+|++++|. ..+++..+   
T Consensus       664 ~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~  742 (856)
T PRK03059        664 DTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVE  742 (856)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHH
Confidence            46777798888899999999999999999999999999999999999986 79999999999998877 44444444   


Q ss_pred             -HHHHHHhcccCCCC------C-------ccceeee--CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee
Q 024087           89 -YIQQRLETDASFAP------S-------LRSSVGV--MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH  152 (272)
Q Consensus        89 -~I~~aL~~~~~~~~------~-------~~~~v~~--~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~  152 (272)
                       .|+++|.+...+..      +       ....|.+  +++..+|.|+|.+.||||||++|+++|+++|+||..|+|+|.
T Consensus       743 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~  822 (856)
T PRK03059        743 HELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL  822 (856)
T ss_pred             HHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec
Confidence             44555554321110      0       1112333  567789999999999999999999999999999999999999


Q ss_pred             CCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087          153 NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (272)
Q Consensus       153 g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~  189 (272)
                      |++|.|+|||++    .++.++++++.|++.|.++|.
T Consensus       823 ~~~v~DvF~V~~----~~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        823 GERVEDTFLIDG----SGLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             CCEEEEEEEEcC----CCCCCHHHHHHHHHHHHHHhc
Confidence            999999999954    335578899999999988775

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.7e-25  Score=223.08  Aligned_cols=181  Identities=25%  Similarity=0.394  Sum_probs=145.1

Q ss_pred             HHhc-cCCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHH
Q 024087            8 LIRR-MNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKE   85 (272)
Q Consensus         8 l~~~-~~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~   85 (272)
                      |.+. ...|.|.+.+....+.|+|+|+++|+|.||+.+|+.+...|+||.+|+|+| .+|+++|+|.|.+++|..+....
T Consensus       664 l~~~~~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr  743 (867)
T COG2844         664 LVRHDLGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDR  743 (867)
T ss_pred             HHhhhccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhH
Confidence            3444 577999999988889999999999999999999999999999999999997 78999999999999999877432


Q ss_pred             ---HHHHHHHHHhcccCCCCC------------ccceeee--CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEE
Q 024087           86 ---VIDYIQQRLETDASFAPS------------LRSSVGV--MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAE  148 (272)
Q Consensus        86 ---~~~~I~~aL~~~~~~~~~------------~~~~v~~--~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~  148 (272)
                         ....+.+++......++.            ...+|.+  +.+...|+|||.+.||||||++|+++|++++++|++|+
T Consensus       744 ~~~~~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~Ak  823 (867)
T COG2844         744 RAALRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAK  823 (867)
T ss_pred             HHHHHHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeee
Confidence               223344444333222110            1123444  56778999999999999999999999999999999999


Q ss_pred             EEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087          149 IWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (272)
Q Consensus       149 i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~  190 (272)
                      |.|.|+||+|+|||++ ..|.+++.+.+ ..+.+.|...|..
T Consensus       824 ItT~GErveD~F~vt~-~~~~~l~~~~~-q~l~~~ll~al~~  863 (867)
T COG2844         824 ITTFGERVEDVFIVTD-ADGQALNAELR-QSLLQRLLEALLP  863 (867)
T ss_pred             eccccccceeEEEEec-cccccCCHHHH-HHHHHHHHHHhcc
Confidence            9999999999999999 78999965444 5555555555543

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.86  E-value=1.4e-21  Score=143.69  Aligned_cols=70  Identities=27%  Similarity=0.368  Sum_probs=67.3

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (272)
Q Consensus       116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~  186 (272)
                      +|+|||.+.||||||++|+++|+++|++|+.|+|.|.|++++|+|||+| ..|.|+.|+++++.|+++|..
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~~   70 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLGT   70 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhcc
Confidence            5899999999999999999999999999999999999999999999999 789999999999999999864

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.86  E-value=1e-21  Score=145.35  Aligned_cols=73  Identities=21%  Similarity=0.260  Sum_probs=70.5

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (272)
Q Consensus       116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~  189 (272)
                      +|+|||.++||||||++|+++|.++|++|..|+|.|+|++|.|+|||+| ..|.|+.++++++.|+++|..+|.
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d-~~g~kl~~~~~~~~l~~~L~~al~   73 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH-KDGRTLSTEGERQRVIKCLEAAIE   73 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc-CCCCccCCHHHHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999999999999999999999 799999999999999999998875

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.82  E-value=6.9e-20  Score=135.64  Aligned_cols=71  Identities=20%  Similarity=0.268  Sum_probs=67.6

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE--eeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW--THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~--T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~  189 (272)
                      |+|||.+.|||||||+|+++|.++|++|.+|+|.  |.|+|++|+||| + ..|.|+.|+++++.|+++|..+|.
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999999  999999999999 7 689999999999999999998775

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.74  E-value=2.3e-17  Score=122.19  Aligned_cols=71  Identities=21%  Similarity=0.339  Sum_probs=67.7

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      +|+|.|.++||||||++++++|+++|++|.+|+|+|.|+.+.|+|+|++.+|.|+.++...+.|+++|...
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~a   71 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAA   71 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999998888998888764

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.72  E-value=5.2e-17  Score=119.42  Aligned_cols=70  Identities=59%  Similarity=0.961  Sum_probs=67.4

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET   96 (272)
Q Consensus        27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~   96 (272)
                      +|+|.|.++||||||++++++|.++|++|..|+|+|.|+++.|+|+|++.+|+|+.+++.++.|+++|..
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~   70 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT   70 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence            5899999999999999999999999999999999999999999999999999999999899999999875

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.71  E-value=7.8e-17  Score=119.05  Aligned_cols=73  Identities=66%  Similarity=0.996  Sum_probs=68.6

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCC-CCCCCCHHHHHHHHHHhcccccC
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHST-GYAIKDPKRLSTIKELLFNVLRG  190 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~-G~~i~d~~~l~~i~~~L~~~L~~  190 (272)
                      |+|||.++||||||++|+++|+++||||..|++.|.|+++.|+|||+| .. |.|+.+++++++|++.|.++|.+
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d-~~~~~~~~~~~~~~~i~~~L~~~l~g   74 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD-EETGAPIDDPIRLASIEDRLDNVLRG   74 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc-CcCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            689999999999999999999999999999999999999999999999 66 88998889999999999988763

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.65  E-value=9.8e-16  Score=112.64  Aligned_cols=71  Identities=34%  Similarity=0.524  Sum_probs=65.9

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee-CCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccc
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~-g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L  188 (272)
                      +.|+|.++||||||++|+++|+.+|+||..|+|.|. ++++.|+|||++ ..|.++.++++++.+++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~-~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC-CCCCCCChHHHHHHHHHHHHhhC
Confidence            679999999999999999999999999999999999 589999999999 78999988889999999998764

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.61  E-value=5.8e-15  Score=127.90  Aligned_cols=134  Identities=14%  Similarity=0.177  Sum_probs=100.8

Q ss_pred             CCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccC---C
Q 024087           24 CADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS---F  100 (272)
Q Consensus        24 ~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~---~  100 (272)
                      ...+.+|++.++|||||.+.++++|+++|+||.+++....+|.|.-++.|..   .+    .....|+.+|.....   +
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~---~~----~~~~~le~~L~~l~~~~~L   77 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG---SW----NAITLIESTLPLKGAELDL   77 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC---Ch----hHHHHHHHHHHhhhhhcCe
Confidence            4578999999999999999999999999999999999999998887888743   32    245677777765431   1


Q ss_pred             CCCccc-eee-eCCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC--eeEEEEEEEe
Q 024087          101 APSLRS-SVG-VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND--RAAAVVHVTD  164 (272)
Q Consensus       101 ~~~~~~-~v~-~~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~--rv~dvFyVtd  164 (272)
                      ....++ .-. -......+.++|.|.||||++++||++|+++|+||...+..|++.  .....|...-
T Consensus        78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~  145 (190)
T PRK11589         78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQI  145 (190)
T ss_pred             EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEE
Confidence            111111 000 011112489999999999999999999999999999999999985  4455555543

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.59  E-value=9.5e-15  Score=108.54  Aligned_cols=71  Identities=24%  Similarity=0.361  Sum_probs=64.1

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEe-eCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T-~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~  190 (272)
                      ++||.++||||||++|+++|+++|+||..|+|.| .++++.|+|||+| ..|. ..++++++++++.|.++|..
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d-~~~~-~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITD-AREL-LHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeC-CCCC-CCCHHHHHHHHHHHHHHHch
Confidence            6899999999999999999999999999999996 8999999999999 5566 55678889999999888764

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.57  E-value=2.7e-14  Score=104.92  Aligned_cols=70  Identities=27%  Similarity=0.477  Sum_probs=63.7

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET   96 (272)
Q Consensus        27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~-gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~   96 (272)
                      ++.|.|.++||||||++++++|+.+|+||.+|+|+|. +|+++|+|+|++++|.++.+++.+++|++.|..
T Consensus         1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~   71 (73)
T cd04900           1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED   71 (73)
T ss_pred             CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence            3689999999999999999999999999999999985 799999999999999988777778888888754

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.55  E-value=3.9e-14  Score=104.59  Aligned_cols=69  Identities=28%  Similarity=0.401  Sum_probs=63.4

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCC-CCCCCcHHHHHHHHHHHhc
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCD-GKKIRDKEVIDYIQQRLET   96 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~-G~~~~~~~~~~~I~~aL~~   96 (272)
                      |+|.|.++||||||++++++|+++|+||.+|+|+|.+|.++|+|+|++++ |.++.+++.+++|++.|..
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~   70 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDN   70 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999988 8888787777888887755

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.54  E-value=5.1e-14  Score=104.31  Aligned_cols=69  Identities=29%  Similarity=0.473  Sum_probs=64.0

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE--ecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS--SDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~--T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      |++.|.++||||||++++++|.++|++|..|+|+  |.|..+.|+|+| +.+|.++.+++..+.|+++|...
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~   71 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREE   71 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999  999999999999 88899999988888888888654

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.51  E-value=1.7e-13  Score=101.79  Aligned_cols=68  Identities=22%  Similarity=0.389  Sum_probs=59.3

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      ++.|+++||||||++++++|+++|++|.+|+|+| .+|+++|+|+|++++|. ..+++.++.|+++|...
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~   70 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAV   70 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999997 89999999999998777 45556667777777553

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.44  E-value=1e-12  Score=95.56  Aligned_cols=65  Identities=25%  Similarity=0.306  Sum_probs=54.9

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHH
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL   94 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL   94 (272)
                      ..|.|+++||||||++++++|+.+|+||.+|+|+| .+|+++|+|+|++.+|..  ...+.+.++++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~--~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE--TAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc--hHHHHHHHHHhh
Confidence            57999999999999999999999999999999997 799999999999988863  123444555544

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.39  E-value=3.4e-12  Score=92.03  Aligned_cols=70  Identities=41%  Similarity=0.609  Sum_probs=64.0

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccc
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L  188 (272)
                      |.|+|.+.||||+|++|+++|+++|++|.++++.|.++.+.++|++++ ..|.|+ +.+++++|++.|.+++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~-~~~~~~-~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhhC
Confidence            689999999999999999999999999999999999999999999999 778884 5678899999987654

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.38  E-value=4e-12  Score=93.26  Aligned_cols=67  Identities=34%  Similarity=0.495  Sum_probs=62.2

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhc
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF  185 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~  185 (272)
                      |.|+|.++||||+|++|+.+|+++|+||.+|.+.|.++.+.++|+|++ ..|.++ ++++++.+++.|.
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~-~~~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD-ANGNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEEC-CCCCcC-CHHHHHHHHHHhc
Confidence            689999999999999999999999999999999999889999999999 678888 6788888988886

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.37  E-value=6.7e-12  Score=92.05  Aligned_cols=68  Identities=25%  Similarity=0.507  Sum_probs=62.7

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET   96 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~   96 (272)
                      +.|.|.++||||+|++++++|+++|+||.+|.++|.+++++|+|+|++++|.++ +++.+++|+++|..
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~~   69 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIGP   69 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhcc
Confidence            689999999999999999999999999999999998889999999999988877 66788899999874

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.37  E-value=4.2e-12  Score=132.47  Aligned_cols=85  Identities=22%  Similarity=0.407  Sum_probs=78.2

Q ss_pred             CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087           13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (272)
Q Consensus        13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~   92 (272)
                      .+|.|.+++....++|+|.|+++||||||++|+++|+.+|++|.+|+|+|.|+.++|+|+|++.+|.++.+++.++.|++
T Consensus       800 ~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~  879 (895)
T PRK00275        800 FPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQD  879 (895)
T ss_pred             CCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999988766677777


Q ss_pred             HHhcc
Q 024087           93 RLETD   97 (272)
Q Consensus        93 aL~~~   97 (272)
                      +|...
T Consensus       880 ~L~~~  884 (895)
T PRK00275        880 AICEQ  884 (895)
T ss_pred             HHHHH
Confidence            76554

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.37  E-value=7.5e-12  Score=126.79  Aligned_cols=143  Identities=15%  Similarity=0.165  Sum_probs=114.3

Q ss_pred             EEEEEEe-cCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCC-CCcc
Q 024087           28 TVIKVDS-VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA-PSLR  105 (272)
Q Consensus        28 t~V~V~s-~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~-~~~~  105 (272)
                      -.|+|.. +|++|+|.+++++|+.++++|.+|++.+ +|.+..+|.|...-|.+..+....+.++.++.+..+.. +.+.
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT  625 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence            4667766 9999999999999999999999999999 77778999999888888777777888888887775422 1112


Q ss_pred             ceeeeCCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhc
Q 024087          106 SSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF  185 (272)
Q Consensus       106 ~~v~~~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~  185 (272)
                      + +..    ..+++||.+.||||+|+.|+++|.    .|..|++.|.|..++|+||++.   |.      ..+.++..+.
T Consensus       626 ~-~~~----~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~---~~------~r~~~~~~~~  687 (693)
T PRK00227        626 A-TFW----HGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP---GF------DRATVERDVT  687 (693)
T ss_pred             c-eEe----eCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC---cc------cHHHHHHHHH
Confidence            2 212    127999999999999999999999    8999999999999999999984   21      1245666666


Q ss_pred             cccc
Q 024087          186 NVLR  189 (272)
Q Consensus       186 ~~L~  189 (272)
                      .+|.
T Consensus       688 ~~~~  691 (693)
T PRK00227        688 RVLA  691 (693)
T ss_pred             HHHh
Confidence            5554

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.33  E-value=6.3e-12  Score=130.66  Aligned_cols=84  Identities=24%  Similarity=0.344  Sum_probs=78.4

Q ss_pred             CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087           13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (272)
Q Consensus        13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~   92 (272)
                      .||+|.|+|+....+|+|.|.++||||||++|+++|.++|++|..|+|+|.|+.+.|+|+|++.+|.++++++. +.|++
T Consensus       769 ~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~~  847 (854)
T PRK01759        769 VKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEER-KALKS  847 (854)
T ss_pred             CCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHH-HHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999988755 88888


Q ss_pred             HHhcc
Q 024087           93 RLETD   97 (272)
Q Consensus        93 aL~~~   97 (272)
                      +|...
T Consensus       848 ~L~~~  852 (854)
T PRK01759        848 RLLSN  852 (854)
T ss_pred             HHHHH
Confidence            87653

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.32  E-value=9.3e-12  Score=129.81  Aligned_cols=84  Identities=19%  Similarity=0.342  Sum_probs=76.9

Q ss_pred             CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087           13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (272)
Q Consensus        13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~   92 (272)
                      .||+|.++|+....+|+|.|.++||||||++|+++|.++|++|..|+|+|.|+.+.|+|+|++.+|.+++ ++.++.|++
T Consensus       794 ~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~-~~~~~~l~~  872 (884)
T PRK05007        794 VPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALN-EELQQELRQ  872 (884)
T ss_pred             CCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCC-HHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999999999999999999988 455677777


Q ss_pred             HHhcc
Q 024087           93 RLETD   97 (272)
Q Consensus        93 aL~~~   97 (272)
                      +|...
T Consensus       873 ~L~~~  877 (884)
T PRK05007        873 RLTEA  877 (884)
T ss_pred             HHHHH
Confidence            76553

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.32  E-value=1.3e-11  Score=128.41  Aligned_cols=84  Identities=21%  Similarity=0.287  Sum_probs=77.4

Q ss_pred             CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087           13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (272)
Q Consensus        13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~   92 (272)
                      .||+|.+++....++|+|.|.+.||||||++|+++|+++|++|..|+|+|.|+.++|+|+|++.+|.++.+++. +.|++
T Consensus       782 ~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~  860 (869)
T PRK04374        782 FAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESAR-QALRD  860 (869)
T ss_pred             CCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHH-HHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999998877655 88888


Q ss_pred             HHhcc
Q 024087           93 RLETD   97 (272)
Q Consensus        93 aL~~~   97 (272)
                      +|...
T Consensus       861 ~L~~~  865 (869)
T PRK04374        861 ALCAC  865 (869)
T ss_pred             HHHHH
Confidence            87654

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.31  E-value=1.3e-11  Score=127.13  Aligned_cols=81  Identities=26%  Similarity=0.435  Sum_probs=75.5

Q ss_pred             CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087           13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (272)
Q Consensus        13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~   92 (272)
                      .+|.|.+++....++|+|.|.++||||||++|+++|+++|+||..|+|+|.|+.++|+|+|++.+|.+++++  ++.|++
T Consensus       693 ~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~  770 (774)
T PRK03381        693 APPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQ  770 (774)
T ss_pred             CCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHH
Confidence            356899999999999999999999999999999999999999999999999999999999999999999876  788888


Q ss_pred             HHh
Q 024087           93 RLE   95 (272)
Q Consensus        93 aL~   95 (272)
                      +|-
T Consensus       771 ~L~  773 (774)
T PRK03381        771 AVL  773 (774)
T ss_pred             Hhh
Confidence            774

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.29  E-value=1.5e-11  Score=103.57  Aligned_cols=153  Identities=12%  Similarity=0.179  Sum_probs=115.4

Q ss_pred             CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccC---CC
Q 024087           25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS---FA  101 (272)
Q Consensus        25 ~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~---~~  101 (272)
                      ..|.+|++.++||||+...+++...++|+||.+++++..|+.|.-+..|.   |.|    +-...|+++|.....   +.
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis---gs~----dav~~le~~l~~l~~~~~L~   75 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS---GSW----DAVTLLEATLPLLGAELDLL   75 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe---eCH----HHHHHHHHHhhcccccCCeE
Confidence            46899999999999999999999999999999999999999888666665   332    456888888876532   11


Q ss_pred             CCccce-eee-CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe--eEEEEEEEeCCCCCCCCCHHHH
Q 024087          102 PSLRSS-VGV-MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR--AAAVVHVTDHSTGYAIKDPKRL  177 (272)
Q Consensus       102 ~~~~~~-v~~-~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r--v~dvFyVtd~~~G~~i~d~~~l  177 (272)
                      ..+.+. ... ......+.++|.+.||||++.++|+.|.++|+||.+....|+...  -+-.|++.= .-+-|.+  ...
T Consensus        76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~i-t~~lPa~--~~i  152 (176)
T COG2716          76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQI-TARLPAN--LSI  152 (176)
T ss_pred             EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhh-hccCCCc--CcH
Confidence            111111 111 345568899999999999999999999999999999998887643  455677754 4466765  345


Q ss_pred             HHHHHHhccc
Q 024087          178 STIKELLFNV  187 (272)
Q Consensus       178 ~~i~~~L~~~  187 (272)
                      +.|+++|.+.
T Consensus       153 ~~l~~~f~al  162 (176)
T COG2716         153 SALRDAFEAL  162 (176)
T ss_pred             HHHHHHHHHH
Confidence            6777776543

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.26  E-value=4.3e-11  Score=125.61  Aligned_cols=85  Identities=36%  Similarity=0.503  Sum_probs=78.0

Q ss_pred             CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087           13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (272)
Q Consensus        13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~   92 (272)
                      .+|.|.|+|....++|+|.|.++||||||++|+++|+++|+||..|+|.|.++.+.|+|+|++.+|.++.+++.++.|++
T Consensus       829 ~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~  908 (931)
T PRK05092        829 VPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRR  908 (931)
T ss_pred             CCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999988766677777


Q ss_pred             HHhcc
Q 024087           93 RLETD   97 (272)
Q Consensus        93 aL~~~   97 (272)
                      +|...
T Consensus       909 ~L~~~  913 (931)
T PRK05092        909 ALLAA  913 (931)
T ss_pred             HHHHH
Confidence            76554

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.23  E-value=1.1e-10  Score=84.03  Aligned_cols=68  Identities=32%  Similarity=0.490  Sum_probs=61.6

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET   96 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~   96 (272)
                      |+|.|.++|+||+|++++++|+++|++|.++++.+.+++++|.|++.+++|.+ .+++.+++|+++|..
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~-~~~~~~~~i~~~l~~   68 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-LDPERQEALRAALGE   68 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999999888999999999999888 455678889988864

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.16  E-value=2.1e-10  Score=119.52  Aligned_cols=83  Identities=34%  Similarity=0.461  Sum_probs=77.7

Q ss_pred             CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087           13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (272)
Q Consensus        13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~   92 (272)
                      .||.|.|+|...+++|+|.|.++||||||++|+++|+++|++|..|+|.|.|+++.|+|+|++..|.++.+ +..+.|++
T Consensus       765 ~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~  843 (850)
T TIGR01693       765 VPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQRLLE  843 (850)
T ss_pred             CCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999887 56788888


Q ss_pred             HHhc
Q 024087           93 RLET   96 (272)
Q Consensus        93 aL~~   96 (272)
                      +|..
T Consensus       844 ~L~~  847 (850)
T TIGR01693       844 VLAA  847 (850)
T ss_pred             HHHH
Confidence            8765

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.16  E-value=2.6e-10  Score=118.71  Aligned_cols=82  Identities=18%  Similarity=0.294  Sum_probs=72.3

Q ss_pred             CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087           13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (272)
Q Consensus        13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~   92 (272)
                      .+|.|.+++....++|+|.|.++||||||++|+++|+.+|++|..|+|+|.||.++|+|+|++.   ++.+++.++.|++
T Consensus       772 ~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~---~~~~~~~~~~l~~  848 (856)
T PRK03059        772 ITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGS---GLSDNRLQIQLET  848 (856)
T ss_pred             CCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCC---CCCCHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999999999543   3456667788888


Q ss_pred             HHhcc
Q 024087           93 RLETD   97 (272)
Q Consensus        93 aL~~~   97 (272)
                      +|...
T Consensus       849 ~L~~~  853 (856)
T PRK03059        849 ELLDA  853 (856)
T ss_pred             HHHHH
Confidence            87653

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=99.06  E-value=1.5e-09  Score=77.54  Aligned_cols=70  Identities=43%  Similarity=0.649  Sum_probs=61.0

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccc
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L  188 (272)
                      +.|.+.+.|+||+|++|+.+|+++|++|.++.+.+.+++..++|++.+ ..+.+. ++++.+.|++.|..++
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~-~~~~~~-~~~~~~~l~~~l~~~~   70 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD-SDGRPL-DPERIARLEEALEDAL   70 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhhC
Confidence            368899999999999999999999999999999999889999999988 666764 4578888998886543

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=2.1e-09  Score=108.82  Aligned_cols=83  Identities=33%  Similarity=0.502  Sum_probs=74.0

Q ss_pred             CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087           13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (272)
Q Consensus        13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~   92 (272)
                      -+|.|.|.+......|++.|.+.||||||++++++|++++++|..|+|+|-|..+.|+|+|++..|.+++++ ..+.+.+
T Consensus       777 i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~~~-~~q~l~~  855 (867)
T COG2844         777 IPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNAE-LRQSLLQ  855 (867)
T ss_pred             cCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccCCHH-HHHHHHH
Confidence            469999999999999999999999999999999999999999999999999999999999999999998654 4455555


Q ss_pred             HHhc
Q 024087           93 RLET   96 (272)
Q Consensus        93 aL~~   96 (272)
                      .|..
T Consensus       856 ~ll~  859 (867)
T COG2844         856 RLLE  859 (867)
T ss_pred             HHHH
Confidence            5443

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.92  E-value=1.6e-08  Score=72.23  Aligned_cols=68  Identities=38%  Similarity=0.580  Sum_probs=59.3

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET   96 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~   96 (272)
                      +.|.|.++|+||+|++++++|+.+|++|.++++.+.+++..++|++..+++.. .+++..+.|++.|..
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~   68 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRP-LDPERIARLEEALED   68 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHh
Confidence            36889999999999999999999999999999999766999999999887776 445677888888854

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=98.87  E-value=1.6e-08  Score=73.56  Aligned_cols=65  Identities=23%  Similarity=0.354  Sum_probs=52.0

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee-CCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccc
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~-g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L  188 (272)
                      ..|-|.++|||||++.|+.+|..+|+||..|+|.|. ++.+-|+|+|.+ .+|..      .+.++++|+.+|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d-~~~~~------~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTG-WKRGE------TAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEec-CCccc------hHHHHHHHHHhh
Confidence            367889999999999999999999999999999866 467999999999 44543      234555555443

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.74  E-value=7.2e-08  Score=71.31  Aligned_cols=65  Identities=25%  Similarity=0.399  Sum_probs=53.7

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccc
Q 024087          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (272)
Q Consensus       116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L  188 (272)
                      +.+|.+.|+||||+++.|+++|+++||||...+.++.+++..-++-|.- +       +...+.++..|....
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~-~-------~~~~~~l~~~L~~l~   66 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSI-P-------EDSLERLESALEELA   66 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEE-S-------HHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEe-C-------cccHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999999999999888876 3       446677877776543

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.63  E-value=2.3e-07  Score=65.37  Aligned_cols=48  Identities=27%  Similarity=0.400  Sum_probs=40.6

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe--eEEEEEEEe
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR--AAAVVHVTD  164 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r--v~dvFyVtd  164 (272)
                      |.|.+.++||||+|++|+.+|+++|+||..+...+.++.  ...++.+.+
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~   50 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD   50 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC
Confidence            578999999999999999999999999999999999884  344444443

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.62  E-value=1.2e-07  Score=67.00  Aligned_cols=66  Identities=27%  Similarity=0.425  Sum_probs=54.6

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET   96 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~   96 (272)
                      ++|+|.|+|+.||-.+++.++.+.|++|.++.++|+|.|++-+|+|...... +  +-..+.|++.|..
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~-~--~~rW~lLK~RL~~   66 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPS-I--KVRWDLLKNRLMS   66 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCC-C--cccHHHHHHHHHh
Confidence            4799999999999999999999999999999999999999999999854322 1  1245566666654

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.60  E-value=5.7e-07  Score=66.48  Aligned_cols=64  Identities=23%  Similarity=0.262  Sum_probs=51.7

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      ..+|+|.++||||++++++++|+++|+||.+.++.+.+|.|.-.+.|.-+       +...+.|+++|...
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999988888754       23456677777653

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.52  E-value=1.2e-06  Score=61.63  Aligned_cols=48  Identities=27%  Similarity=0.318  Sum_probs=41.2

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCC--EEEEEEEEEc
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGG--WFMDVFNVID   75 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg--~~~dvF~V~d   75 (272)
                      +.|.|.++||||+|++++++|+++|+||..+++.+.++  +.+.++.+.+
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~   50 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD   50 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC
Confidence            57899999999999999999999999999999998554  6666666554

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.47  E-value=7.8e-06  Score=65.25  Aligned_cols=113  Identities=24%  Similarity=0.227  Sum_probs=85.0

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccce
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSS  107 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~~  107 (272)
                      -+|+|...||||-|+.++.+|...|+||..-.|.-.+.+-+-...|.++           ++-.++|+...       ..
T Consensus         4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-----------d~A~~~Lee~g-------F~   65 (142)
T COG4747           4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-----------DEAHSVLEEAG-------FT   65 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-----------HHHHHHHHHCC-------cE
Confidence            4689999999999999999999999999988887666655544554332           23456676642       12


Q ss_pred             eeeCCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEE
Q 024087          108 VGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVT  163 (272)
Q Consensus       108 v~~~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVt  163 (272)
                      |..     .-++-|...|+||-|+.|+.+|.+.++|+..+...++..+ +.-+|-+.
T Consensus        66 Vr~-----~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~e  117 (142)
T COG4747          66 VRE-----TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVE  117 (142)
T ss_pred             EEe-----eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhh
Confidence            221     2378888999999999999999999999999999887754 44344333

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.42  E-value=2e-06  Score=63.70  Aligned_cols=48  Identities=19%  Similarity=0.183  Sum_probs=43.0

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVID   75 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d   75 (272)
                      .+|++.|+||||+.+++++.|+++|+||.+++.+..+|+|.-...+..
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~   49 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG   49 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe
Confidence            689999999999999999999999999999999998888866665553

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.40  E-value=1.6e-06  Score=63.75  Aligned_cols=47  Identities=30%  Similarity=0.338  Sum_probs=42.7

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd  164 (272)
                      ++.+.|.||||++++|+++|+++||||...+-.+.+++..-.|.+.-
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~   47 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQI   47 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEc
Confidence            37899999999999999999999999999999999988887787764

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.24  E-value=7.8e-06  Score=60.04  Aligned_cols=50  Identities=18%  Similarity=0.088  Sum_probs=44.3

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCC
Q 024087           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDG   78 (272)
Q Consensus        29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G   78 (272)
                      +|+|.++||||+.++++++|+++|+||.+.+..+.++.|.-.+.|.-+.+
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~   50 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS   50 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC
Confidence            47999999999999999999999999999998887787777888876654

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.20  E-value=6.2e-06  Score=61.07  Aligned_cols=47  Identities=26%  Similarity=0.470  Sum_probs=41.1

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEE
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT  163 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVt  163 (272)
                      .+|.+.|+||||+++.|+++|+++||||......+.+++..-.+-+.
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~   48 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVE   48 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEE
Confidence            58899999999999999999999999999999999888765545444

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=98.15  E-value=2.6e-05  Score=57.69  Aligned_cols=64  Identities=23%  Similarity=0.377  Sum_probs=49.2

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee--CCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (272)
Q Consensus       116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~--g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~  186 (272)
                      .+.|+|.+.||||+|++|+.++++.|+||..+++.+.  ++.+.-.|.+.=       .|.+++..|-+.|+.
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-------~d~~~L~~ii~~L~~   71 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-------KDLEHLNQIIRKLRQ   71 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-------SSHHHHHHHHHHHCT
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-------CCHHHHHHHHHHHHC
Confidence            5689999999999999999999999999999999985  445555555532       356788888877764

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.10  E-value=1.1e-05  Score=60.94  Aligned_cols=48  Identities=23%  Similarity=0.332  Sum_probs=42.5

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd  164 (272)
                      .+|.+.|+||||++++|+++|+++||||...+-.+.+++..-.+.+.-
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~   49 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDI   49 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEe
Confidence            478999999999999999999999999999999998877666666654

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.08  E-value=7.3e-06  Score=59.87  Aligned_cols=45  Identities=22%  Similarity=0.423  Sum_probs=36.9

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd  164 (272)
                      +|.+.|+||||++++|+++|+++||||...+..+...  ...|++.-
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~--~~~f~~~~   45 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPD--SGRFFMRV   45 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCC--CCeEEEEE
Confidence            4789999999999999999999999999999887322  23466643

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=98.04  E-value=2.1e-05  Score=59.61  Aligned_cols=47  Identities=23%  Similarity=0.391  Sum_probs=40.5

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEE
Q 024087          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV  162 (272)
Q Consensus       116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyV  162 (272)
                      .++|.+.|+||||++++|+++|+++|+||...+-.+.++...-.+.+
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v   49 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLV   49 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEE
Confidence            57899999999999999999999999999999988877655554444

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=98.02  E-value=1.5e-05  Score=69.17  Aligned_cols=51  Identities=16%  Similarity=0.364  Sum_probs=47.4

Q ss_pred             CceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087          114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (272)
Q Consensus       114 ~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd  164 (272)
                      .++.+|.+.|+|||||++.|+++|+++||||...+....|+..+-++-|+.
T Consensus         6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~   56 (190)
T PRK11589          6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG   56 (190)
T ss_pred             ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC
Confidence            468899999999999999999999999999999999999999888888854

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.98  E-value=5e-05  Score=56.01  Aligned_cols=36  Identities=33%  Similarity=0.494  Sum_probs=34.0

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN  153 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g  153 (272)
                      +|.+.|+||||++++|+++|+++|+||......|.+
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~   36 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYS   36 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeec
Confidence            368999999999999999999999999999999987

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.98  E-value=5.3e-05  Score=55.24  Aligned_cols=46  Identities=17%  Similarity=0.208  Sum_probs=37.3

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 024087           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVI   74 (272)
Q Consensus        29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~   74 (272)
                      +|+|.|+||||++++++++|+++|+||.+.+..+  .++.+.-.+.+.
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~   48 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFE   48 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEE
Confidence            4789999999999999999999999999999986  344444344443

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=97.97  E-value=4.2e-05  Score=57.91  Aligned_cols=48  Identities=27%  Similarity=0.327  Sum_probs=42.7

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEE
Q 024087           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI   74 (272)
Q Consensus        27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~   74 (272)
                      ..+|+|.|+||||++++++++|+++|+||.+....+.++.+.-.+.+.
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~   50 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVD   50 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEE
Confidence            578999999999999999999999999999999888888777655554

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.94  E-value=3.7e-05  Score=58.09  Aligned_cols=49  Identities=24%  Similarity=0.263  Sum_probs=43.0

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcC
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDC   76 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~   76 (272)
                      .+|++.|+||||++++++++|+++|+||.+....+.++.+.-.+.+.-+
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~   50 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS   50 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC
Confidence            5789999999999999999999999999999999877777666666644

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.93  E-value=8.7e-05  Score=54.69  Aligned_cols=48  Identities=21%  Similarity=0.209  Sum_probs=40.7

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecC------CEEEEEEEEEcC
Q 024087           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDG------GWFMDVFNVIDC   76 (272)
Q Consensus        29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~g------g~~~dvF~V~d~   76 (272)
                      +|+|.|+|+||+++++++.|+++|+||.+....+.+      +.+.-.+.+.-+
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p   54 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP   54 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC
Confidence            478999999999999999999999999999998865      556555666544

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.85  E-value=0.00057  Score=63.10  Aligned_cols=49  Identities=16%  Similarity=0.172  Sum_probs=39.0

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE--ecCCEEEEEEEEE
Q 024087           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS--SDGGWFMDVFNVI   74 (272)
Q Consensus        26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~--T~gg~~~dvF~V~   74 (272)
                      ...+|+|.|+|||||.+.++++|+++|+||.+.+.+  +..|.+.-.+.+.
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~   58 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFH   58 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEE
Confidence            356899999999999999999999999999999997  4344443333333

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.84  E-value=6.9e-05  Score=53.21  Aligned_cols=67  Identities=19%  Similarity=0.299  Sum_probs=57.6

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccc
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~  187 (272)
                      ++|.|.++|+.||=.+|++++.+.|++|.++.++|.|.-.--+|.|...  ..++  +.+.+.+|.+|..+
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~--~~~~--~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR--PPSI--KVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC--CCCC--cccHHHHHHHHHhc
Confidence            4789999999999999999999999999999999999888889999862  3333  45788899988754

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.81  E-value=0.00024  Score=51.27  Aligned_cols=62  Identities=13%  Similarity=0.255  Sum_probs=46.5

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC-CeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccc
Q 024087          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (272)
Q Consensus       119 Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g-~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~  187 (272)
                      |.+.+.||||+|++|+.++++.|+||......+.. +.+...|-+.       +.+.++++.+...|..+
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ve-------v~~~~~l~~i~~~L~~i   64 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVD-------APSEEHAETIVAAVRAL   64 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEE-------cCCHHHHHHHHHHHhcC
Confidence            68899999999999999999999999998887654 3333333332       23467778777777643

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.78  E-value=0.0012  Score=60.82  Aligned_cols=110  Identities=7%  Similarity=0.101  Sum_probs=64.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccc
Q 024087           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD--GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS  106 (272)
Q Consensus        29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~--gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~  106 (272)
                      +|+|.|+|||||.+.+++.|+++|+||.+.+.+.+  +|+|.-.+.+.-+ +..++-+++.+.++.++.....      .
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~~~~~l~~~l~~~~~~~~~------l   74 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRLEESSLLAAFKSALAEKFE------M   74 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHHhC------C
Confidence            68999999999999999999999999999999984  4776656665533 2223333444444442333221      1


Q ss_pred             eeeeCCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEE
Q 024087          107 SVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVV  145 (272)
Q Consensus       107 ~v~~~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~  145 (272)
                      .+.+........|-|.+.-+--=|.+|......-.+++.
T Consensus        75 ~i~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~  113 (280)
T TIGR00655        75 TWELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAE  113 (280)
T ss_pred             EEEEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcE
Confidence            111111111223333333334456666666665555443

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.73  E-value=0.00022  Score=52.11  Aligned_cols=60  Identities=22%  Similarity=0.282  Sum_probs=45.8

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccc
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~  187 (272)
                      .|++.+.||+|+|++|+.++++.|+||.+.++.+. +.    ++++-     .+.+..+++.+-++|+.+
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~----i~l~i-----~v~~~~~L~~li~~L~~i   61 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR----IYLNF-----PTIEFEKLQTLMPEIRRI   61 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce----EEEEe-----EecCHHHHHHHHHHHhCC
Confidence            47899999999999999999999999999999775 22    33332     123466777777777643

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.64  E-value=0.00065  Score=50.08  Aligned_cols=65  Identities=17%  Similarity=0.274  Sum_probs=50.3

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      .+.+.|.+.||||+|+++++++++.|+||.+..+.+  .++.+.-.|.+.-.      +.+.++.|.+.|...
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~------d~~~L~~ii~~L~~i   72 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK------DLEHLNQIIRKLRQI   72 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES------SHHHHHHHHHHHCTS
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC------CHHHHHHHHHHHHCC
Confidence            357899999999999999999999999999999998  47787777776532      345667777777654

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.63  E-value=0.0018  Score=59.74  Aligned_cols=49  Identities=18%  Similarity=0.171  Sum_probs=42.6

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 024087           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVI   74 (272)
Q Consensus        26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~   74 (272)
                      ...+|+|.|+|||||.++++++|+++|+||.+.+..+  .+|.|.-.+.+.
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~   55 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFE   55 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEE
Confidence            4678999999999999999999999999999999998  777665555554

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.55  E-value=0.00048  Score=63.50  Aligned_cols=42  Identities=24%  Similarity=0.452  Sum_probs=37.7

Q ss_pred             CceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEe--eCCe
Q 024087          114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT--HNDR  155 (272)
Q Consensus       114 ~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T--~g~r  155 (272)
                      .+.++|.+.|.||||++++|+++|+++||||......+  .++.
T Consensus         4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~   47 (286)
T PRK06027          4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGR   47 (286)
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCe
Confidence            34679999999999999999999999999999999988  5553

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.52  E-value=0.00013  Score=55.54  Aligned_cols=47  Identities=23%  Similarity=0.335  Sum_probs=38.1

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEE
Q 024087          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV  162 (272)
Q Consensus       116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyV  162 (272)
                      ..+|.|.|.||||+.+.|+++|+++|+||....=.-..+...-.+.|
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV   49 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLV   49 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEE
Confidence            45899999999999999999999999999987644444555555555

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.49  E-value=0.00095  Score=47.02  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=29.7

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee
Q 024087          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH  152 (272)
Q Consensus       119 Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~  152 (272)
                      +.+..+|+||+|++|+.+|++.|+||.+......
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~   34 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA   34 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence            3577899999999999999999999998876543

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.47  E-value=0.0066  Score=56.03  Aligned_cols=52  Identities=17%  Similarity=0.185  Sum_probs=42.4

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCC
Q 024087           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDG   78 (272)
Q Consensus        27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G   78 (272)
                      ..+|+|.|+|||||.++++++|+++|+||.+.+..+  .++.|.-.+.+..+.+
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~   60 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEG   60 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCC
Confidence            467999999999999999999999999999999875  4556655566654444

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.46  E-value=0.0019  Score=46.56  Aligned_cols=62  Identities=13%  Similarity=0.140  Sum_probs=48.3

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      +.|.+.||||+|+++++++++.|.||.+....+ ..|++.-.|.+.-.      +...++.|.+.|...
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~------~~~~l~~i~~~L~~i   64 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP------SEEHAETIVAAVRAL   64 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC------CHHHHHHHHHHHhcC
Confidence            678999999999999999999999999888876 45776656665432      234667777777664

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=97.44  E-value=0.0012  Score=47.30  Aligned_cols=63  Identities=19%  Similarity=0.267  Sum_probs=45.0

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC-eeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~-rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~  186 (272)
                      .|.+.+.||||+|.+|+.+|++.|++|......+..+ ..+.+.+++..      .+...++.+-+.|..
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~------~~~~~l~~~i~~L~~   65 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE------TSEAALNAALAEIEA   65 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc------CCHHHHHHHHHHHHc
Confidence            5788999999999999999999999999988765432 33444444442      134555656666553

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.38  E-value=0.00065  Score=46.57  Aligned_cols=45  Identities=18%  Similarity=0.256  Sum_probs=37.2

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC-CeeEEEEEEE
Q 024087          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVT  163 (272)
Q Consensus       119 Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g-~rv~dvFyVt  163 (272)
                      |++...|+||.|++++.+|.++|+||.+..+...+ +++.-.|-+.
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~   46 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS   46 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence            45788999999999999999999999999988776 5555555553

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=97.37  E-value=0.00022  Score=60.55  Aligned_cols=65  Identities=22%  Similarity=0.330  Sum_probs=56.6

Q ss_pred             CceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087          114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (272)
Q Consensus       114 ~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~  186 (272)
                      .++.+|...|.||||++..|+++..++|||+...++.++|+..+-+..++. +       ......++..|..
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisg-s-------~dav~~le~~l~~   67 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISG-S-------WDAVTLLEATLPL   67 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEee-C-------HHHHHHHHHHhhc
Confidence            457899999999999999999999999999999999999999999999976 3       4556677776653

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=97.36  E-value=0.0022  Score=45.01  Aligned_cols=62  Identities=13%  Similarity=0.262  Sum_probs=45.3

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee-CCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~-g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~  186 (272)
                      .|.+.+.|+||+|.+|+.+|+++|++|.+....+. ++....+.+.++ .     .+ ..++.+.++|..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~-----~~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE-G-----DD-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE-C-----CH-HHHHHHHHHHhC
Confidence            46788999999999999999999999999998876 444444444444 1     12 455666666653

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.36  E-value=0.00088  Score=47.67  Aligned_cols=44  Identities=14%  Similarity=0.295  Sum_probs=37.4

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEE
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV  162 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyV  162 (272)
                      ..|.|..+|+||.|++|+++|.++|+||.+..+...+++  .++.+
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl   45 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRL   45 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEE
Confidence            367888999999999999999999999999998777664  44444

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.31  E-value=0.0023  Score=47.59  Aligned_cols=66  Identities=5%  Similarity=0.113  Sum_probs=49.8

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE-eeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW-THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~-T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~  189 (272)
                      ..|.+...|+||+|++|+.+|+..|.||.+..+. |.......+..+.. .      ++..+++|..+|.....
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~-~------~~~~i~qi~kQL~KLid   69 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV-C------TENEATLLVSQLKKLIN   69 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE-C------CHHHHHHHHHHHhCCcC
Confidence            3688999999999999999999999999999986 44444555444433 1      34567788888876543

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.29  E-value=0.00052  Score=63.26  Aligned_cols=45  Identities=11%  Similarity=0.273  Sum_probs=37.3

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEE
Q 024087          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV  162 (272)
Q Consensus       116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyV  162 (272)
                      .++|.+.|+||||++++||++|+++|+||....-.|..  ....|+.
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~--~~~~F~m   51 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDR--LSGRFFM   51 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecC--CCCeEEE
Confidence            56899999999999999999999999999998877543  3344444

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=97.27  E-value=0.0025  Score=45.94  Aligned_cols=62  Identities=19%  Similarity=0.284  Sum_probs=44.4

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC-CeeEEEEEEEeCCCCCCCCCHH-HHHHHHHHhcc
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPK-RLSTIKELLFN  186 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g-~rv~dvFyVtd~~~G~~i~d~~-~l~~i~~~L~~  186 (272)
                      .|.+.+.||||+|++|+++|++.|+||......+.. +.+.-.|-+.-       .+.+ .+..|-++|..
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v-------~~~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT-------STMNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc-------CchHHHHHHHHHHHhc
Confidence            578999999999999999999999999998765433 33333444432       2233 66777777664

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.24  E-value=0.0029  Score=45.04  Aligned_cols=47  Identities=21%  Similarity=0.322  Sum_probs=36.9

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC--eeEEEEEEE
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND--RAAAVVHVT  163 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~--rv~dvFyVt  163 (272)
                      +.+.+..+|+||.|++|+++|+++|+||..........  ...-.|.+.
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~   50 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK   50 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence            46788999999999999999999999999887766532  333345554

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=97.16  E-value=0.002  Score=55.21  Aligned_cols=64  Identities=11%  Similarity=0.288  Sum_probs=45.6

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEe--eCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccc
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT--HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T--~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L  188 (272)
                      ..|.+.+.||||+|++|+.+|+..|+||.+..+..  ..+-...++-+..        ++..+++|+++|....
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~--------~~~~ieqL~kQL~KLi   68 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG--------DDRTIEQLTKQLYKLV   68 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC--------CHHHHHHHHHHHHHHh
Confidence            37899999999999999999999999999999965  2233333333322        1233567777776543

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=97.16  E-value=0.0014  Score=45.75  Aligned_cols=44  Identities=20%  Similarity=0.329  Sum_probs=37.0

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC--CeeEEEEEE
Q 024087          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHV  162 (272)
Q Consensus       119 Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g--~rv~dvFyV  162 (272)
                      +.+.+.|+||+|++|+.+|++.|+||.+..+...+  +...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            67889999999999999999999999999987765  445555555

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.15  E-value=0.0019  Score=59.65  Aligned_cols=35  Identities=20%  Similarity=0.439  Sum_probs=32.7

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE
Q 024087          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW  150 (272)
Q Consensus       116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~  150 (272)
                      .++|.+.|+||||+++.||.+|+++|+||..+.-.
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~   43 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF   43 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence            56899999999999999999999999999998875

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.15  E-value=0.00056  Score=50.33  Aligned_cols=72  Identities=22%  Similarity=0.300  Sum_probs=54.3

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC--Ce-eEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DR-AAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g--~r-v~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~  190 (272)
                      -+|++|.-||-.+|++|-+|..+|+.|-+|+|.-|-  ++ .+-..++.+ ..+..+..+..-.+|.+++...|.+
T Consensus         2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~-e~~~~~~~~~~r~~i~drv~~~lmg   76 (77)
T cd04898           2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLL-EHDRLKLGGRQRSKVVDRVTKTLMG   76 (77)
T ss_pred             cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeec-CCCccccchHHHHHHHHHHHHHHhc
Confidence            479999999999999999999999999999996553  33 444455555 3355566555567788877777654

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=97.14  E-value=0.0039  Score=43.62  Aligned_cols=33  Identities=27%  Similarity=0.422  Sum_probs=30.4

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEe
Q 024087          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (272)
Q Consensus       119 Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T  151 (272)
                      |.+.+.||||.|.+|+.+|+++|++|.+.....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~   34 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR   34 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence            577899999999999999999999999988766

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=97.12  E-value=0.0043  Score=52.36  Aligned_cols=66  Identities=20%  Similarity=0.271  Sum_probs=50.4

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC-eeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~-rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~  190 (272)
                      .|.+...|+||.|++|+.+|++.|+||.+..+...++ ....+-.+.+   |    |+..+++|..+|......
T Consensus         3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~---~----d~~~i~qi~kQl~Kli~V   69 (157)
T TIGR00119         3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV---G----DDKVLEQITKQLNKLVDV   69 (157)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE---C----CHHHHHHHHHHHhcCccE
Confidence            6889999999999999999999999999998877663 3333333334   2    356778888888875543

acetohydroxyacid synthase is a synonym.

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.11  E-value=0.00099  Score=50.82  Aligned_cols=48  Identities=25%  Similarity=0.286  Sum_probs=41.1

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEE
Q 024087           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI   74 (272)
Q Consensus        27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~   74 (272)
                      ..+|+|.++||||+.+.++.+|+++|.||.+-...--.|||--.+.|-
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~   50 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVD   50 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEc
Confidence            468999999999999999999999999999877766677776566654

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=97.09  E-value=0.0021  Score=44.74  Aligned_cols=36  Identities=17%  Similarity=0.302  Sum_probs=31.7

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN  153 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g  153 (272)
                      ++.+.-+||||-|++++.+|+++|+||.+...+...
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            367788999999999999999999999988876654

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=97.09  E-value=0.0029  Score=57.36  Aligned_cols=44  Identities=20%  Similarity=0.286  Sum_probs=39.1

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec--CCEEEE
Q 024087           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD--GGWFMD   69 (272)
Q Consensus        26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~--gg~~~d   69 (272)
                      ...++++.|+|++||.+.+++.|..+|+||.++..+++  .|+|+-
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFm   51 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFM   51 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEE
Confidence            56899999999999999999999999999999999973  566543

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.06  E-value=0.0055  Score=45.23  Aligned_cols=48  Identities=27%  Similarity=0.290  Sum_probs=40.3

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC-eeEEEEEEEe
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTD  164 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~-rv~dvFyVtd  164 (272)
                      +.+.+..+|+||.|++|..+|+++|+||.+.+...... ...-+|||.-
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~   50 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF   50 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence            46777889999999999999999999999998776653 4667888865

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=97.03  E-value=0.0058  Score=51.77  Aligned_cols=67  Identities=16%  Similarity=0.276  Sum_probs=49.5

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC-CeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g-~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~  190 (272)
                      ..|.+...|+||.|++|+.+|++.|+||.+..+.... .....+..+.+   |    |+..+++|..+|......
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~---~----~~~~i~qi~kQl~KLidV   70 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS---G----DEQVIEQITKQLNKLIDV   70 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE---C----CHHHHHHHHHHHhccccE
Confidence            3689999999999999999999999999998886654 23333333334   1    356778888888765443

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=97.02  E-value=0.0054  Score=46.39  Aligned_cols=66  Identities=11%  Similarity=0.158  Sum_probs=50.4

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC-CeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g-~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~  189 (272)
                      .|.+...|+||+|++|+.+|+..|+||.+..+.... .....+-.+.. .     .|+..+++|..+|.....
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~-~-----~d~~~ieqI~kQL~Klid   70 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD-I-----QDDTSLHILIKKLKQQIN   70 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe-C-----CCHHHHHHHHHHHhCCcc
Confidence            688899999999999999999999999999986544 44555544443 1     245677888888876543

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.99  E-value=0.0061  Score=42.81  Aligned_cols=36  Identities=17%  Similarity=0.466  Sum_probs=32.3

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN  153 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g  153 (272)
                      .|.+.+.|+||.|++|+..|.+++++|.+....+.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~   37 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER   37 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence            578899999999999999999999999988876653

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=96.96  E-value=0.0085  Score=49.02  Aligned_cols=43  Identities=23%  Similarity=0.474  Sum_probs=37.9

Q ss_pred             CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC
Q 024087          111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN  153 (272)
Q Consensus       111 ~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g  153 (272)
                      .+....+.|.+.+.||||+|++|+++|++++++|.+....+..
T Consensus        51 ~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~   93 (136)
T PRK08577         51 LPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK   93 (136)
T ss_pred             CCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence            3455588999999999999999999999999999998887754

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=96.96  E-value=0.007  Score=44.03  Aligned_cols=60  Identities=17%  Similarity=0.285  Sum_probs=44.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      .+.|.+.||+|+|++++.++++.|.||.+..+.+. +...-.+.|.        +.+.++.|.+.|...
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i~v~--------~~~~L~~li~~L~~i   61 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNFPTI--------EFEKLQTLMPEIRRI   61 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEeEec--------CHHHHHHHHHHHhCC
Confidence            47899999999999999999999999999999876 5422222332        234456666666654

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=96.95  E-value=0.009  Score=41.88  Aligned_cols=62  Identities=16%  Similarity=0.168  Sum_probs=43.1

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-----CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-----GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~-----gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      +.|..+|+||+|++++.+|++.|+||.+......     .+...-.|.+.-.      +....+.+.+.|...
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~------~~~~l~~l~~~l~~~   67 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR------GAEHIEEIIAALREA   67 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC------CHHHHHHHHHHHHHc
Confidence            3578899999999999999999999998876643     3544444444432      123456666666553

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.86  E-value=0.0045  Score=42.33  Aligned_cols=46  Identities=26%  Similarity=0.298  Sum_probs=39.0

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEc
Q 024087           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNVID   75 (272)
Q Consensus        30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~-gg~~~dvF~V~d   75 (272)
                      +.+..+|+||.+.+++++|.+.|+||...++... ++.++-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            3578899999999999999999999999998874 477776777654

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.86  E-value=0.0085  Score=41.69  Aligned_cols=44  Identities=16%  Similarity=0.231  Sum_probs=38.0

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecC--CEEEEEEEE
Q 024087           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDG--GWFMDVFNV   73 (272)
Q Consensus        30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~g--g~~~dvF~V   73 (272)
                      +.|...|++|++++++++|++.|++|.+......+  +...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            57899999999999999999999999999988743  666666666

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.83  E-value=0.011  Score=40.05  Aligned_cols=61  Identities=26%  Similarity=0.422  Sum_probs=42.3

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhc
Q 024087          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF  185 (272)
Q Consensus       119 Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~  185 (272)
                      |.+.+.|+||++.+|+.+|.+++++|....+...++....+.+.....      +...++.+.+.|.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~   61 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR------DLEHLARIMRKLR   61 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC------CHHHHHHHHHHHh
Confidence            467899999999999999999999999998877653333333222211      2344555665554

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=96.83  E-value=0.0067  Score=55.81  Aligned_cols=35  Identities=17%  Similarity=0.340  Sum_probs=32.5

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH  152 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~  152 (272)
                      +|.+.|+||||+++.||.+|+++|+||....-.+.
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~   36 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTD   36 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEc
Confidence            68999999999999999999999999999887764

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=96.83  E-value=0.014  Score=59.97  Aligned_cols=68  Identities=16%  Similarity=0.120  Sum_probs=55.6

Q ss_pred             eEEEEEc-CCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087          117 TSIEFTG-TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (272)
Q Consensus       117 T~Iev~~-~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~  190 (272)
                      ..+.|.. +|+||+|+.++.+|+.+|.+|.+|.+.+ ++.+...|-|.. ..|.|.+ +.   .+++.+...+.+
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~~-~~---~~~~~~~~~~~~  615 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDFD-PQ---EFLQAYKSGVYS  615 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCCC-hH---HHHHHHHHhhcC
Confidence            5777777 9999999999999999999999999999 888899999998 6688764 43   345555555544

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.77  E-value=0.013  Score=45.46  Aligned_cols=67  Identities=19%  Similarity=0.283  Sum_probs=49.8

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (272)
Q Consensus       116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~  190 (272)
                      ...|.+...|+||+|+.|+.+|+..|.||.+..+.-.+.. ..-+.-+..   +     +..+++|..+|......
T Consensus         8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~---~-----~~~i~Qi~kQL~KLidV   75 (96)
T PRK08178          8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN---D-----DQRLEQMISQIEKLEDV   75 (96)
T ss_pred             CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc---C-----chHHHHHHHHHhCCcCE
Confidence            4578999999999999999999999999999988655543 344333332   1     24778888888765543

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.59  E-value=0.014  Score=43.36  Aligned_cols=65  Identities=9%  Similarity=0.173  Sum_probs=46.8

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC-CeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g-~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~  189 (272)
                      ..|.+...|+||.|++|+.+|+..|.||.+..+.-.. .....+-.+.+  +      +..+++|..+|.....
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~------~~~i~ql~kQL~KL~d   69 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--S------ERPIDLLSSQLNKLVD   69 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--C------CchHHHHHHHHhcCcC
Confidence            4789999999999999999999999999999986533 33333333332  1      3445677777765443

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.59  E-value=0.003  Score=44.66  Aligned_cols=45  Identities=24%  Similarity=0.268  Sum_probs=37.1

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEE
Q 024087           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI   74 (272)
Q Consensus        30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~   74 (272)
                      +.+.+.|+||++++++.+|++.|.||...+..+.+|.+.-.|.+.
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~   46 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDID   46 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC
Confidence            677999999999999999999999998877666667766555543

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.58  E-value=0.011  Score=42.12  Aligned_cols=43  Identities=26%  Similarity=0.428  Sum_probs=33.6

Q ss_pred             EEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee--CCeeEEEEEE
Q 024087          120 EFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHV  162 (272)
Q Consensus       120 ev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~--g~rv~dvFyV  162 (272)
                      -+...|+||.+++|+.+|+++|+||.+......  ++.+.-+|.+
T Consensus         3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v   47 (73)
T cd04902           3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV   47 (73)
T ss_pred             EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence            357899999999999999999999998877553  3445444444

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.57  E-value=0.012  Score=41.79  Aligned_cols=45  Identities=22%  Similarity=0.362  Sum_probs=37.1

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEE
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI   74 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~   74 (272)
                      ..+.|..+|+||.|++++.+|.+.|+||...+++..++.  -++.+.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~   46 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI   46 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence            367889999999999999999999999999998875443  334443

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.56  E-value=0.01  Score=53.92  Aligned_cols=66  Identities=15%  Similarity=0.377  Sum_probs=47.9

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeC--CCCCCCCCHHHHHHHHHHhcc
Q 024087          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDH--STGYAIKDPKRLSTIKELLFN  186 (272)
Q Consensus       115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~--~~G~~i~d~~~l~~i~~~L~~  186 (272)
                      ..+++.++|+|+|||++.|+..|.++||||..+.-.+  +.....|+.+-+  ..+.|.+    .+.+++.|..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~--D~~~g~FFmR~~f~~~~~~~~----~~~l~~~f~~   73 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD--DPETGRFFMRVEFEGEGGPLD----REALRAAFAP   73 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccc--ccccCeEEEEEEEecCCCccc----HHHHHHHHHH
Confidence            4679999999999999999999999999999988764  454555665442  3344432    3455555554

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.55  E-value=0.022  Score=39.70  Aligned_cols=45  Identities=27%  Similarity=0.289  Sum_probs=35.5

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-c-CCEEEEEEEEE
Q 024087           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-D-GGWFMDVFNVI   74 (272)
Q Consensus        30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~-gg~~~dvF~V~   74 (272)
                      +.+...|+||.+.+++.+|+++|++|....... . ++.+.-.+.+.
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~   48 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVD   48 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeC
Confidence            578899999999999999999999999888766 2 45544334443

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.54  E-value=0.0028  Score=44.85  Aligned_cols=40  Identities=18%  Similarity=0.317  Sum_probs=32.3

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEE
Q 024087          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA  158 (272)
Q Consensus       119 Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~d  158 (272)
                      |-+.+.||||+|++|+.+|++.|+||.+....+.++.+.-
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~   41 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYV   41 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEE
Confidence            3457999999999999999999999988877665533333

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.49  E-value=0.012  Score=40.87  Aligned_cols=45  Identities=24%  Similarity=0.408  Sum_probs=35.7

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecC--CEEEEEEEE
Q 024087           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDG--GWFMDVFNV   73 (272)
Q Consensus        29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~g--g~~~dvF~V   73 (272)
                      ++.|.-+|+||-|++++++|.++|+||.+...+...  +...-.|.+
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v   47 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT   47 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence            367889999999999999999999999988876543  555434444

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.48  E-value=0.022  Score=40.92  Aligned_cols=34  Identities=18%  Similarity=0.342  Sum_probs=30.2

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee
Q 024087          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH  152 (272)
Q Consensus       119 Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~  152 (272)
                      +.+.-+||||-|++++.+|+++|.||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            5678899999999999999999999998876554

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07334 threonine dehydratase; Provisional

Probab=96.44  E-value=0.053  Score=52.17  Aligned_cols=64  Identities=17%  Similarity=0.265  Sum_probs=47.5

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee----C-CeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH----N-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (272)
Q Consensus       116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~----g-~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~  186 (272)
                      .+.|+|.+.||||+|++|+.+|++.++||.+....+.    . +.+.-.|-|.       +.+.++++.+..+|+.
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~-------V~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE-------TRDAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE-------eCCHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999988764    2 2322222221       2346777777777764

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.44  E-value=0.028  Score=39.31  Aligned_cols=46  Identities=13%  Similarity=0.081  Sum_probs=36.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEE
Q 024087           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNVI   74 (272)
Q Consensus        29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~-gg~~~dvF~V~   74 (272)
                      .+.+.++|+||.|++++..|++++++|.+....+. ++.+.-.|.+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~   48 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE   48 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence            57889999999999999999999999998888764 34443334443

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.34  E-value=0.021  Score=40.59  Aligned_cols=46  Identities=20%  Similarity=0.338  Sum_probs=37.6

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEc
Q 024087           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVID   75 (272)
Q Consensus        30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d   75 (272)
                      +.+..+|+||.+++++++|+++|+||.+.....  .++..+-+|.+..
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~   49 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE   49 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence            467899999999999999999999999888754  4566665666643

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=96.32  E-value=0.018  Score=36.96  Aligned_cols=46  Identities=37%  Similarity=0.576  Sum_probs=35.3

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEe
Q 024087          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTD  164 (272)
Q Consensus       119 Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd  164 (272)
                      |.+.+.|+||++++|+.+|.+.|++|........... ...+++..+
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~   47 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVD   47 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEe
Confidence            4678999999999999999999999999988665422 334444443

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK04435 hypothetical protein; Provisional

Probab=96.26  E-value=0.045  Score=45.55  Aligned_cols=68  Identities=19%  Similarity=0.220  Sum_probs=48.5

Q ss_pred             CCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC-CeeEEEEEEEeCCCCCCCCCH-HHHHHHHHHhcc
Q 024087          112 PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDP-KRLSTIKELLFN  186 (272)
Q Consensus       112 ~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g-~rv~dvFyVtd~~~G~~i~d~-~~l~~i~~~L~~  186 (272)
                      .......|.+...||||+|++|+.+|++.|+||......... +.+.-.|-+.-       .+. ..++.|-++|..
T Consensus        65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev-------s~~~~~L~~Li~~L~~  134 (147)
T PRK04435         65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT-------SSMEGDIDELLEKLRN  134 (147)
T ss_pred             CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe-------CChHHHHHHHHHHHHc
Confidence            466788999999999999999999999999999988765433 33444444432       122 256666666653

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.24  E-value=0.051  Score=38.99  Aligned_cols=64  Identities=13%  Similarity=0.087  Sum_probs=46.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~-gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      .+.|.+.|+||++++++.+|+++|.+|......+. +|.+--.|.+.-.+.     +..++.|.+.|...
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~-----~~~l~~l~~~L~~i   66 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM-----NGDIDELLEELREI   66 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch-----HHHHHHHHHHHhcC
Confidence            47899999999999999999999999998877653 455554566543221     12567777777664

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.22  E-value=0.056  Score=38.25  Aligned_cols=36  Identities=28%  Similarity=0.365  Sum_probs=32.3

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD   63 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~   63 (272)
                      ..+.+..+|+||.|+++++.|+++|++|...+....
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~   37 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI   37 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence            357889999999999999999999999998887663

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.15  E-value=0.023  Score=40.42  Aligned_cols=62  Identities=13%  Similarity=0.228  Sum_probs=42.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-C-CEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-G-GWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET   96 (272)
Q Consensus        29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~-g-g~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~   96 (272)
                      .+.|.+.|+||++.+++.+|+++|++|......+. + +.+.-.+.+...      +....+.+.+.|..
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~------~~~~l~~~i~~L~~   65 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET------SEAALNAALAEIEA   65 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC------CHHHHHHHHHHHHc
Confidence            46788999999999999999999999999887653 2 544433333222      23344555555554

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=96.11  E-value=0.039  Score=35.26  Aligned_cols=45  Identities=27%  Similarity=0.474  Sum_probs=35.4

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecC-CEEEEEEEEE
Q 024087           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDG-GWFMDVFNVI   74 (272)
Q Consensus        30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~g-g~~~dvF~V~   74 (272)
                      |.+.++|++|++.++.++|.+.|++|.+....... .+...++...
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~   46 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVV   46 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEE
Confidence            46889999999999999999999999999987643 3333344433

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.05  E-value=0.041  Score=38.29  Aligned_cols=45  Identities=16%  Similarity=0.133  Sum_probs=36.4

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEEE
Q 024087           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD--GGWFMDVFNVI   74 (272)
Q Consensus        30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~--gg~~~dvF~V~   74 (272)
                      +.+.+.|+||++.+++.+|.++|++|......+.  ++.+.-.|.+.
T Consensus         3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~   49 (72)
T cd04878           3 LSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE   49 (72)
T ss_pred             EEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence            6788999999999999999999999999888764  45554445544

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=96.04  E-value=0.033  Score=39.65  Aligned_cols=57  Identities=11%  Similarity=0.269  Sum_probs=38.2

Q ss_pred             CCcchHHHHHHHHHhCCCcEEEEEEEeeC--CeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087          125 DRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (272)
Q Consensus       125 DRpGLL~~It~vL~~~g~~I~~A~i~T~g--~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~  189 (272)
                      |+||.|..|+.+|...|.||.+..+....  +...-.+-+..  +      +..++.|..+|.+...
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~--~------~~~i~~l~~Ql~Klid   59 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG--D------DREIEQLVKQLEKLID   59 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---------CCHHHHHHHHHHCSTT
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee--C------chhHHHHHHHHhccCC
Confidence            78999999999999999999999998733  33333333322  1      2345667777765543

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.96  E-value=0.036  Score=39.40  Aligned_cols=34  Identities=29%  Similarity=0.601  Sum_probs=30.7

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW  150 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~  150 (272)
                      +.+.+..+|+||.|.+|+.+|.++|+||.+....
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~   35 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVY   35 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEe
Confidence            4788899999999999999999999999988653

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=95.95  E-value=0.09  Score=39.78  Aligned_cols=63  Identities=11%  Similarity=0.169  Sum_probs=44.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      .+.+...|+||.|++++++|+..|+||.+-.+..  +.|..=-++.+.  .|    ++...+.|.+-|...
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~--~~----d~~~ieqI~kQL~Kl   68 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD--IQ----DDTSLHILIKKLKQQ   68 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe--CC----CHHHHHHHHHHHhCC
Confidence            5889999999999999999999999999988874  334332233332  12    245566676666553

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.83  E-value=0.13  Score=34.59  Aligned_cols=61  Identities=20%  Similarity=0.334  Sum_probs=43.3

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecC-CEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDG-GWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET   96 (272)
Q Consensus        30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~g-g~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~   96 (272)
                      +.|.+.|+||.+.++.+.|.+.+++|.+..+...+ +++.-.|.+..++      ......+.+.|..
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~   62 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRD------LEHLARIMRKLRQ   62 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECC------HHHHHHHHHHHhC
Confidence            46789999999999999999999999999887654 5544344444322      2234555566654

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK08577 hypothetical protein; Provisional

Probab=95.83  E-value=0.17  Score=41.31  Aligned_cols=77  Identities=12%  Similarity=0.093  Sum_probs=51.8

Q ss_pred             EEEEEeCC--CCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEEEcCCCCCCCcHHHHHHHH
Q 024087           16 RVVIDNNT--CADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD--GGWFMDVFNVIDCDGKKIRDKEVIDYIQ   91 (272)
Q Consensus        16 ~V~i~n~~--~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~--gg~~~dvF~V~d~~G~~~~~~~~~~~I~   91 (272)
                      .+.+.+-.  .+....+.|.+.|+||+|++++++|+++|.+|.+....+.  ++.+.-.|.+.-.+.     +...+.+.
T Consensus        43 ~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~-----~~~l~~l~  117 (136)
T PRK08577         43 EIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS-----DIDLEELE  117 (136)
T ss_pred             EEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc-----hhhHHHHH
Confidence            45554433  3457889999999999999999999999999998887763  454443444432221     12345566


Q ss_pred             HHHhcc
Q 024087           92 QRLETD   97 (272)
Q Consensus        92 ~aL~~~   97 (272)
                      +.|...
T Consensus       118 ~~L~~l  123 (136)
T PRK08577        118 EELKKL  123 (136)
T ss_pred             HHHHcC
Confidence            666553

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.79  E-value=0.06  Score=38.96  Aligned_cols=45  Identities=18%  Similarity=0.180  Sum_probs=36.7

Q ss_pred             EEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC-eeEEEEEEEe
Q 024087          120 EFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTD  164 (272)
Q Consensus       120 ev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~-rv~dvFyVtd  164 (272)
                      -+...|+||-|++|..+|+++|+||.+.+...... ...-.|||.-
T Consensus         3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~   48 (75)
T cd04880           3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF   48 (75)
T ss_pred             EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence            34557999999999999999999999997665544 5677888865

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>PRK06635 aspartate kinase; Reviewed

Probab=95.63  E-value=0.29  Score=46.93  Aligned_cols=109  Identities=18%  Similarity=0.277  Sum_probs=67.3

Q ss_pred             CeEEEEEE-ecCCCcHHHHHHHHHHhCCceEEEEEEEecC-CEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCC
Q 024087           26 DATVIKVD-SVNKHGILLQVIQVLNDVNLVIKKAYISSDG-GWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS  103 (272)
Q Consensus        26 ~~t~V~V~-s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~g-g~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~  103 (272)
                      +...|+|. -.++||+++++..+|.+.|++|.....+... |..--.|.|...+.     +...+.|.+ +.....    
T Consensus       261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~-----~~a~~~L~~-~~~~~~----  330 (404)
T PRK06635        261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDL-----EKALELLEE-VKDEIG----  330 (404)
T ss_pred             CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHH-----HHHHHHHHH-HHHHcC----
Confidence            44555554 3568999999999999999999976544322 23333455543111     112222333 111000    


Q ss_pred             ccceeeeCCCCceeEEEEEc---CCCcchHHHHHHHHHhCCCcEEEE
Q 024087          104 LRSSVGVMPTEEHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNA  147 (272)
Q Consensus       104 ~~~~v~~~~~~~~T~Iev~~---~DRpGLL~~It~vL~~~g~~I~~A  147 (272)
                       ...  +....+...+.+.|   .++||.+++|.++|++.|+||...
T Consensus       331 -~~~--i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i  374 (404)
T PRK06635        331 -AES--VTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI  374 (404)
T ss_pred             -cce--EEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence             001  11223456788876   599999999999999999999875

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=95.58  E-value=0.065  Score=55.31  Aligned_cols=65  Identities=15%  Similarity=0.200  Sum_probs=49.5

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCee-EEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRA-AAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (272)
Q Consensus       115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv-~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~  186 (272)
                      ..+.|.|.+.||+|+|++|+.+|++.++||.++.+.+..++. ...|-+.       +.+.+++..|-..|+.
T Consensus       625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ie-------V~~~~~L~~i~~~Lr~  690 (702)
T PRK11092        625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLT-------ARDRVHLANIMRKIRV  690 (702)
T ss_pred             eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEE-------ECCHHHHHHHHHHHhC
Confidence            466899999999999999999999999999999987775433 3222222       2346778877777764

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.56  E-value=0.064  Score=39.13  Aligned_cols=47  Identities=13%  Similarity=0.183  Sum_probs=38.2

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEe
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTD  164 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd  164 (272)
                      .|-++..|+||-|+++-.+|+.+|+|+.+.+-.....+ ..-.|||.-
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~   49 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC   49 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence            34556689999999999999999999999887666544 667788864

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=95.54  E-value=0.09  Score=40.22  Aligned_cols=69  Identities=16%  Similarity=0.161  Sum_probs=48.9

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC-eeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (272)
Q Consensus       116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~-rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~  189 (272)
                      .|.|-+...|+||-|+++-.+|+++|+|+.+.+-..... ...-.|||.-  .|.  .++ .+..+-+.|...|.
T Consensus        14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi--eg~--~~~-~~~~~l~~L~~~~~   83 (90)
T cd04931          14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL--DKK--SAP-ALDPIIKSLRNDIG   83 (90)
T ss_pred             cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC--CCH-HHHHHHHHHHHHhC
Confidence            467777789999999999999999999999998866543 4677888864  464  233 33333344444443

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=95.44  E-value=0.09  Score=54.51  Aligned_cols=66  Identities=21%  Similarity=0.299  Sum_probs=50.2

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC--CeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccc
Q 024087          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (272)
Q Consensus       115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g--~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~  187 (272)
                      ....|.|.+.||+|||++|+.+|++.++||..+.+.+..  +.+...|-|.       +.+..++..|-.+|..+
T Consensus       665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie-------V~~~~~L~~l~~~L~~i  732 (743)
T PRK10872        665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE-------IYNLQVLGRVLGKLNQV  732 (743)
T ss_pred             eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE-------ECCHHHHHHHHHHHhcC
Confidence            456899999999999999999999999999999987754  3333333332       23467788887777643

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=95.42  E-value=0.41  Score=45.81  Aligned_cols=107  Identities=18%  Similarity=0.298  Sum_probs=67.6

Q ss_pred             CCeEEEEEE---ecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCC
Q 024087           25 ADATVIKVD---SVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA  101 (272)
Q Consensus        25 ~~~t~V~V~---s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~  101 (272)
                      ++...|+|.   -.+++|++.++..+|.+.+++|..-........+  .|.|...+.     ++..+.|.+.+....   
T Consensus       258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~I--s~~V~~~d~-----~~a~~~L~~~~~~~~---  327 (401)
T TIGR00656       258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSI--SLTVDETDA-----DEAVRALKDQSGAAG---  327 (401)
T ss_pred             CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCceE--EEEEeHHHH-----HHHHHHHHHHHHhcC---
Confidence            356778887   4678999999999999999999754432122111  355532110     123333433332110   


Q ss_pred             CCccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEE
Q 024087          102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVN  146 (272)
Q Consensus       102 ~~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~  146 (272)
                         ...+  ....+...|.|.|.   ++||+++++.++|.+.|+||..
T Consensus       328 ---~~~i--~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       328 ---LDRV--EVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             ---CceE--EEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence               0011  12234567888875   7899999999999999999985

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.33  E-value=0.15  Score=36.53  Aligned_cols=61  Identities=18%  Similarity=0.187  Sum_probs=42.3

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec---CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD---GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET   96 (272)
Q Consensus        30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~---gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~   96 (272)
                      +.|.-+|+||-|++++.+|+++|.||.+......   .+.-.-.+.+.-..      +...+.|.++|..
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~------~~~~~~i~~~L~~   65 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMD------RSKENELIEELKA   65 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEec------chHHHHHHHHHhC
Confidence            5788899999999999999999999998866542   33333344443211      1125667777755

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=95.32  E-value=0.52  Score=36.56  Aligned_cols=64  Identities=13%  Similarity=0.170  Sum_probs=44.3

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      +.-.+.+...|+||+|.++++.|+..|+||.+-...-  +.+..=-+..+.   +     +...+.|.+-|...
T Consensus         7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~---~-----~~~i~Qi~kQL~KL   72 (96)
T PRK08178          7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN---D-----DQRLEQMISQIEKL   72 (96)
T ss_pred             CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc---C-----chHHHHHHHHHhCC
Confidence            4456899999999999999999999999999887763  334222122222   1     13556666666554

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=95.14  E-value=0.25  Score=41.69  Aligned_cols=105  Identities=14%  Similarity=0.203  Sum_probs=64.4

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-c-CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccc
Q 024087           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-D-GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS  106 (272)
Q Consensus        29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~-gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~  106 (272)
                      .+.|...|+||.|++++++|+..|+||.+-.+.. . .|...-++.|..       ++...+.|.+-|.....    . .
T Consensus         3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~-------d~~~i~qi~kQl~Kli~----V-~   70 (157)
T TIGR00119         3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG-------DDKVLEQITKQLNKLVD----V-I   70 (157)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC-------CHHHHHHHHHHHhcCcc----E-E
Confidence            5788999999999999999999999999888774 2 466655556542       13456667776765422    0 0


Q ss_pred             ee-eeC----CCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEE
Q 024087          107 SV-GVM----PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNA  147 (272)
Q Consensus       107 ~v-~~~----~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A  147 (272)
                      +| .+.    -..+-..+.|.+...  =..+|.+.....+..|...
T Consensus        71 ~V~~~~~~~~v~rEl~LiKv~~~~~--~r~~i~~i~~~f~a~ivdv  114 (157)
T TIGR00119        71 KVSDLTESAIVERELCLVKVSAPGE--GRDEIIRLTNIFRGRIVDV  114 (157)
T ss_pred             EEEecCCCcceeeEEEEEEEECCcc--CHHHHHHHHHHhCCEEEEe
Confidence            11 110    122345666766421  2345555555555555443

acetohydroxyacid synthase is a synonym.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.12  E-value=0.16  Score=36.04  Aligned_cols=47  Identities=19%  Similarity=0.273  Sum_probs=37.6

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVI   74 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~   74 (272)
                      +.+.+..+|+||.|.+++++|.++|+||.+.+..-  .++...-+|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            57889999999999999999999999999887653  345555455554

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=95.07  E-value=0.29  Score=35.87  Aligned_cols=46  Identities=28%  Similarity=0.354  Sum_probs=34.9

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVI   74 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~   74 (272)
                      +-+.+..+|+||.|+++..+|.++|+||.+-....  .+.|.+ +|+|.
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~-~f~vd   49 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEY-VFFID   49 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceE-EEEEE
Confidence            34566778999999999999999999999886554  334554 45554

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK04435 hypothetical protein; Provisional

Probab=95.07  E-value=0.29  Score=40.69  Aligned_cols=74  Identities=15%  Similarity=0.095  Sum_probs=53.3

Q ss_pred             EEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           19 IDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        19 i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      +..........+.+...|+||+|+++..+|++.|+||....... .+|.+--.|.+...+.     ...++.|.+.|...
T Consensus        61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~~i  135 (147)
T PRK04435         61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKLRNL  135 (147)
T ss_pred             ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHHHcC
Confidence            33445567789999999999999999999999999999887765 3566555566553221     12456666666654

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=95.06  E-value=0.12  Score=53.28  Aligned_cols=66  Identities=24%  Similarity=0.283  Sum_probs=49.4

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEeCCCCCCCCCHHHHHHHHHHhccc
Q 024087          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (272)
Q Consensus       115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~  187 (272)
                      ..+.|.|.+.||+|+|++|+.+|++.++||.+..+.+..+. +.-.|-|       .+.+-.++..|-.+|..+
T Consensus       609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~i-------eV~~~~~L~~ii~~L~~i  675 (683)
T TIGR00691       609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITV-------EIKNYKHLLKIMLKIKTK  675 (683)
T ss_pred             eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEE-------EECCHHHHHHHHHHHhCC
Confidence            46789999999999999999999999999999999876433 2222222       123467788777777643

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK08210 aspartate kinase I; Reviewed

Probab=94.92  E-value=0.76  Score=44.11  Aligned_cols=100  Identities=19%  Similarity=0.306  Sum_probs=67.5

Q ss_pred             CCeEEEEEEecCC-CcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCC
Q 024087           25 ADATVIKVDSVNK-HGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS  103 (272)
Q Consensus        25 ~~~t~V~V~s~Dr-pGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~  103 (272)
                      ++...|+|.+.+. ||.++++..+|.+.|++|.....++..  .  .|.+..         +..+.+.+.|....   . 
T Consensus       269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~~--i--s~~v~~---------~~~~~a~~~l~~~~---~-  331 (403)
T PRK08210        269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPTE--V--VFTVSD---------EDSEKAKEILENLG---L-  331 (403)
T ss_pred             CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCce--E--EEEEcH---------HHHHHHHHHHHHhC---C-
Confidence            3566777877665 999999999999999999987554321  1  355432         11233344444421   0 


Q ss_pred             ccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEE
Q 024087          104 LRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVN  146 (272)
Q Consensus       104 ~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~  146 (272)
                         .+.  ...+...|.|.|.   ++||+++++..+|.+.|++|..
T Consensus       332 ---~v~--~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        332 ---KPS--VRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             ---cEE--EeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence               111  1234557777775   8999999999999999999974

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=94.91  E-value=0.094  Score=38.55  Aligned_cols=47  Identities=19%  Similarity=0.226  Sum_probs=38.3

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC-CeeEEEEEEEe
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD  164 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g-~rv~dvFyVtd  164 (272)
                      .|-++.+|+||-|+++-.+|+.+|+|+.+.+-.... ....-.|||.-
T Consensus         2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~   49 (74)
T cd04929           2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC   49 (74)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence            345566899999999999999999999998886654 34677888865

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=94.79  E-value=0.37  Score=35.76  Aligned_cols=61  Identities=10%  Similarity=0.144  Sum_probs=42.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-e-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS-S-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET   96 (272)
Q Consensus        29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~-T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~   96 (272)
                      .+.+...|+||.|.+++++|+..|+||.+-.+. | +.|..--++.+.   |.    ++..+.|.+-|..
T Consensus         4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~---~~----~~~i~qi~kQL~K   66 (76)
T PRK06737          4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV---CT----ENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE---CC----HHHHHHHHHHHhC
Confidence            588999999999999999999999999988876 3 334332223322   21    3455566666654

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=94.78  E-value=0.11  Score=44.68  Aligned_cols=35  Identities=11%  Similarity=0.237  Sum_probs=32.5

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS   62 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T   62 (272)
                      -.+.|...|+||+|.+++++|+..|+||.+-....
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~   37 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP   37 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence            36899999999999999999999999999998875

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=94.74  E-value=0.36  Score=40.94  Aligned_cols=105  Identities=15%  Similarity=0.200  Sum_probs=63.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-c-CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccc
Q 024087           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-D-GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS  106 (272)
Q Consensus        29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~-gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~  106 (272)
                      .+.|...|+||.|++++++|+..|+||.+-.+.. . .|...-++.|..       ++...+.|.+-|.....    . .
T Consensus         4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~-------~~~~i~qi~kQl~KLid----V-~   71 (161)
T PRK11895          4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG-------DEQVIEQITKQLNKLID----V-L   71 (161)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC-------CHHHHHHHHHHHhcccc----E-E
Confidence            5788999999999999999999999999887764 3 566554555542       13455666666655322    0 0


Q ss_pred             ee-eeC----CCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEE
Q 024087          107 SV-GVM----PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNA  147 (272)
Q Consensus       107 ~v-~~~----~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A  147 (272)
                      +| .+.    -..+-..+.|.+..  .=-.+|.+.....+..|...
T Consensus        72 ~V~~~~~~~~v~rEl~LiKv~~~~--~~r~~i~~i~~~f~a~ivdv  115 (161)
T PRK11895         72 KVVDLTEEAHVERELALVKVRASG--ENRAEILRLADIFRAKIVDV  115 (161)
T ss_pred             EEEecCCcchhheEEEEEEEECCc--ccHHHHHHHHHHhCCEEEEe
Confidence            11 110    12234456666532  11346666655555555544

>PRK11899 prephenate dehydratase; Provisional

Probab=94.69  E-value=0.17  Score=46.51  Aligned_cols=57  Identities=16%  Similarity=0.123  Sum_probs=46.0

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEeCCCCCCCCCHH
Q 024087          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGYAIKDPK  175 (272)
Q Consensus       116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd~~~G~~i~d~~  175 (272)
                      -|.|-+..+|+||.|+++-.+|+++|+|+.+.+.--.+.+ ..-+|||.-  .|. ..|+.
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~--eg~-~~d~~  251 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI--EGH-PEDRN  251 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE--ECC-CCCHH
Confidence            5778888899999999999999999999999998766544 777888854  464 34554

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=94.59  E-value=0.17  Score=52.00  Aligned_cols=68  Identities=25%  Similarity=0.347  Sum_probs=52.3

Q ss_pred             CCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087          113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (272)
Q Consensus       113 ~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~  186 (272)
                      ....+.|.|.+.||+|||.+|+++|++.++||.+....+..++.+.+.+-..      +.+-.++..|-.+|..
T Consensus       624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~------v~n~~~L~~i~~~l~~  691 (701)
T COG0317         624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE------VKNLNHLGRVLARLKQ  691 (701)
T ss_pred             cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE------ECcHHHHHHHHHHHhc
Confidence            3457789999999999999999999999999999988887666555443322      2346677777777664

>PRK07334 threonine dehydratase; Provisional

Probab=94.40  E-value=0.3  Score=46.97  Aligned_cols=64  Identities=14%  Similarity=0.123  Sum_probs=47.9

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-----CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-----GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~-----gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      +.|.|.+.||+|+|.+++.+|++.+.||.+....+.     ++.+.-.|.|.-      .+.+.++.|.+.|...
T Consensus       327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V------~d~~~L~~vi~~Lr~~  395 (403)
T PRK07334        327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET------RDAAHLQEVIAALRAA  395 (403)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe------CCHHHHHHHHHHHHHc
Confidence            689999999999999999999999999999988764     455544454432      2234556666666553

>PRK06291 aspartate kinase; Provisional

Probab=94.29  E-value=1.2  Score=43.90  Aligned_cols=109  Identities=11%  Similarity=0.196  Sum_probs=71.3

Q ss_pred             CCeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCC
Q 024087           25 ADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA  101 (272)
Q Consensus        25 ~~~t~V~V~s~---DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~  101 (272)
                      ++...|+|.+.   +.+|+++++.++|.+.|++|.--...+..-.+  .|.|...+-     +...+.|.+.+.....  
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sI--sf~V~~~d~-----~~av~~L~~~~~~~~~--  389 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNI--SLVVDEADL-----EKALKALRREFGEGLV--  389 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceE--EEEEeHHHH-----HHHHHHHHHHHHHhcC--
Confidence            35678888765   68999999999999999999876554433222  355543211     1234445554443110  


Q ss_pred             CCccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEEE
Q 024087          102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE  148 (272)
Q Consensus       102 ~~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~  148 (272)
                          ..+  .-..+...|.+.|.   +++|+++++..+|.+.|++|....
T Consensus       390 ----~~i--~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is  433 (465)
T PRK06291        390 ----RDV--TFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS  433 (465)
T ss_pred             ----cce--EEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE
Confidence                011  11234557888886   799999999999999999998543

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=94.23  E-value=0.24  Score=43.51  Aligned_cols=44  Identities=23%  Similarity=0.252  Sum_probs=37.3

Q ss_pred             CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC
Q 024087          111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND  154 (272)
Q Consensus       111 ~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~  154 (272)
                      +-..+...|-+.-.||||.+..|+.+|.++|+||....+.....
T Consensus       143 d~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~  186 (208)
T TIGR00719       143 EFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDI  186 (208)
T ss_pred             EecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCC
Confidence            34455667778889999999999999999999999999987653

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=94.10  E-value=0.34  Score=34.44  Aligned_cols=59  Identities=22%  Similarity=0.257  Sum_probs=39.8

Q ss_pred             EEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhc
Q 024087          120 EFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF  185 (272)
Q Consensus       120 ev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~  185 (272)
                      .+.-+||||=|..+.+++.+ |.||...+=...+...+.++..-. .     .+++..+.+.+.|.
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie-~-----~~~~~~~~i~~~L~   60 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQ-V-----PDREDLAELKERLE   60 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEE-e-----CCHHHHHHHHHHHH
Confidence            56789999999999999999 999988765444433333443333 1     23456666666654

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.04  E-value=0.46  Score=49.42  Aligned_cols=65  Identities=14%  Similarity=0.191  Sum_probs=49.7

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD--GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~--gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      ...|.|.+.||+|+|.+++.+|++.++||.+..+.+.  ++.+.-.|.|.-      .+-..+..|...|...
T Consensus       666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV------~~~~~L~~l~~~L~~i  732 (743)
T PRK10872        666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI------YNLQVLGRVLGKLNQV  732 (743)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE------CCHHHHHHHHHHHhcC
Confidence            3588899999999999999999999999999998874  566655565542      2234566676666654

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=93.84  E-value=0.8  Score=36.95  Aligned_cols=59  Identities=24%  Similarity=0.292  Sum_probs=46.4

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      .++-|.-.|+||=|+.++.+|.+.++|+--+|-++ ....++-++.+-|           +++..++|+..
T Consensus        70 dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed-----------~d~~~~aLed~  129 (142)
T COG4747          70 DVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED-----------IDRAIKALEDA  129 (142)
T ss_pred             eEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH-----------HHHHHHHHHHc
Confidence            47889999999999999999999999999999986 4567775555433           35556666654

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=93.82  E-value=0.54  Score=34.87  Aligned_cols=61  Identities=13%  Similarity=0.211  Sum_probs=43.8

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET   96 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~   96 (272)
                      ..+.+...|+||.|.++++++...|+||.+-.+..  +++..--++.| . +.      ...+.|.+-|..
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~-~~------~~i~ql~kQL~K   66 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A-SE------RPIDLLSSQLNK   66 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C-CC------chHHHHHHHHhc
Confidence            46889999999999999999999999999998875  44544334444 2 22      234555555544

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=93.66  E-value=0.25  Score=42.20  Aligned_cols=45  Identities=16%  Similarity=0.133  Sum_probs=36.5

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCC-EEEEEEEE
Q 024087           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGG-WFMDVFNV   73 (272)
Q Consensus        29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg-~~~dvF~V   73 (272)
                      -+.+...|+||.|.++++++++.|.||..|+.+. .+| .+.--|.+
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi   50 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI   50 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence            4678999999999999999999999999999997 344 44433334

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=93.45  E-value=0.66  Score=48.02  Aligned_cols=65  Identities=18%  Similarity=0.295  Sum_probs=49.1

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~-gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      .+.|.|.+.||+|+|.+++.+|+..+.||.+....+. ++.+.-.|.|.-      .+-+.++.|...|...
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~i~~~Lr~i  691 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA------RDRVHLANIMRKIRVM  691 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE------CCHHHHHHHHHHHhCC
Confidence            4478899999999999999999999999999998775 456555555542      2234566666666654

>PRK06382 threonine dehydratase; Provisional

Probab=93.43  E-value=0.48  Score=45.69  Aligned_cols=38  Identities=26%  Similarity=0.309  Sum_probs=34.3

Q ss_pred             CCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE
Q 024087          113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW  150 (272)
Q Consensus       113 ~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~  150 (272)
                      ....+.|+|.-+||||-|.+|+++|.++|+||.+....
T Consensus       327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~  364 (406)
T PRK06382        327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD  364 (406)
T ss_pred             cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence            45678999999999999999999999999999887764

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=93.39  E-value=0.23  Score=39.66  Aligned_cols=49  Identities=12%  Similarity=0.131  Sum_probs=40.2

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEe
Q 024087          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTD  164 (272)
Q Consensus       116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd  164 (272)
                      .|.|-+..+|+||-|++|-.+|+.+|+|+.+.+.-....+ ..-.|||.-
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi   90 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC   90 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence            4677777799999999999999999999999988776544 556777754

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=93.25  E-value=0.23  Score=47.56  Aligned_cols=49  Identities=14%  Similarity=0.175  Sum_probs=41.5

Q ss_pred             ceeEEEEEcC-CCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087          115 EHTSIEFTGT-DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (272)
Q Consensus       115 ~~T~Iev~~~-DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd  164 (272)
                      ..+.|-+.-+ |+||.|++|+.+|+++|+||.+-++ .+.....-.|||.-
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~  343 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGF  343 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEE
Confidence            5677788886 9999999999999999999999999 55555665699865

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=93.03  E-value=0.53  Score=43.32  Aligned_cols=54  Identities=20%  Similarity=0.266  Sum_probs=44.5

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEeCCCCCC
Q 024087          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGYA  170 (272)
Q Consensus       115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd~~~G~~  170 (272)
                      ..|.|-+..+|+||.|+++-.+|+.+|+|..+.+..-.+.+ ..=+|||--  .|..
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~--eg~~  247 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI--EGHI  247 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE--ecCc
Confidence            47888889999999999999999999999999998665544 677777743  4554

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=92.85  E-value=1.2  Score=32.07  Aligned_cols=42  Identities=21%  Similarity=0.388  Sum_probs=31.3

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEE
Q 024087           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVF   71 (272)
Q Consensus        30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF   71 (272)
                      +.+..+|+||-|+++..+|.++|+||.+-.-.-  ...|-+..|
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~   45 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFF   45 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEE
Confidence            345568999999999999999999999884332  235555433

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=92.85  E-value=0.36  Score=41.21  Aligned_cols=47  Identities=15%  Similarity=0.381  Sum_probs=38.7

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd  164 (272)
                      .|.+.+.++||.|.+++-+++++|.||..|+-...++--...+|..-
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi   50 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI   50 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence            57788999999999999999999999999998777664444556543

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=92.77  E-value=0.077  Score=39.85  Aligned_cols=32  Identities=19%  Similarity=0.210  Sum_probs=28.0

Q ss_pred             EEEEEcCC-CcchHHHHHHHHHhCCCcEEEEEE
Q 024087          118 SIEFTGTD-RPGLFSEVCAVLADLHCNVVNAEI  149 (272)
Q Consensus       118 ~Iev~~~D-RpGLL~~It~vL~~~g~~I~~A~i  149 (272)
                      +|.|.|.| ++|+++.|+++|+++|+||....-
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~   33 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR   33 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence            36789999 999999999999999999965443

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=92.49  E-value=1.2  Score=46.14  Aligned_cols=65  Identities=12%  Similarity=0.138  Sum_probs=48.8

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~-gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      .+.|.|.+.||+|+|++++.+|+..+.||.+..+.+. ++.+.-.|.|.-      .+-..+..|...|...
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~ii~~L~~i  675 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI------KNYKHLLKIMLKIKTK  675 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE------CCHHHHHHHHHHHhCC
Confidence            4588899999999999999999999999999999875 466554455442      2234556666666553

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>PRK09034 aspartate kinase; Reviewed

Probab=92.23  E-value=3.1  Score=40.84  Aligned_cols=111  Identities=15%  Similarity=0.155  Sum_probs=68.9

Q ss_pred             CeEEEEEEe---cCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCC
Q 024087           26 DATVIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (272)
Q Consensus        26 ~~t~V~V~s---~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~  102 (272)
                      +.+.|++.+   .+++|+++++..+|.+.|++|.--  .+. ..-+ .|.|...+-.    ...+..+.+.|.....  .
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~ss-~~si-s~~v~~~~~~----~a~~~~l~~el~~~~~--~  376 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--PSG-IDDL-SIIIRERQLT----PKKEDEILAEIKQELN--P  376 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--cCC-CcEE-EEEEeHHHhh----HHHHHHHHHHHHHhhC--C
Confidence            456777765   568999999999999999999875  222 2112 4666543211    0111233333332211  0


Q ss_pred             CccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEEEEEe
Q 024087          103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWT  151 (272)
Q Consensus       103 ~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~i~T  151 (272)
                         ..  +....+...|.+.|.   ++||+++++..+|.+.|+||....-.+
T Consensus       377 ---~~--I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        377 ---DE--LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS  423 (454)
T ss_pred             ---ce--EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence               01  112234567888654   789999999999999999998764333

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.07  E-value=0.91  Score=32.21  Aligned_cols=61  Identities=23%  Similarity=0.256  Sum_probs=40.4

Q ss_pred             EEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           31 KVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        31 ~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      .|.-+||||-|.+++.+|+. |.||..-+-...+-....++....-.     +++..+.|.++|...
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~-----~~~~~~~i~~~L~~~   62 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVP-----DREDLAELKERLEAL   62 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeC-----CHHHHHHHHHHHHHc
Confidence            57789999999999999999 99999876543221122233322222     234667777777664

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=91.96  E-value=0.8  Score=44.35  Aligned_cols=61  Identities=18%  Similarity=0.327  Sum_probs=47.0

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHH
Q 024087          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIK  181 (272)
Q Consensus       115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~  181 (272)
                      ....|-+.-.|+||.++.|+.+|+++|+||...++++.|+.+.-+|-+ |   + ++ +++.++.|+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~-D---~-~~-~~~~~~~i~  397 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV-D---A-DY-AEEALDALK  397 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe-C---C-CC-cHHHHHHHH
Confidence            456777899999999999999999999999999999988666554433 3   2 43 245556665

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=91.91  E-value=0.24  Score=47.94  Aligned_cols=48  Identities=21%  Similarity=0.311  Sum_probs=42.4

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEE
Q 024087           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV   73 (272)
Q Consensus        26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V   73 (272)
                      +...+.+.-.|+||.++.++.+|+++|+||..-+..+.++.++-+|.+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~  384 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV  384 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe
Confidence            667888899999999999999999999999999998888888765544

>TIGR00657 asp_kinases aspartate kinase

Probab=91.72  E-value=7.8  Score=37.67  Aligned_cols=109  Identities=17%  Similarity=0.218  Sum_probs=66.7

Q ss_pred             CCeEEEEEEecCC--CcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCC
Q 024087           25 ADATVIKVDSVNK--HGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (272)
Q Consensus        25 ~~~t~V~V~s~Dr--pGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~  102 (272)
                      ++...|+|.+..-  +|++.++..+|.+.|++|......+...- + .|.|...+-     +...+.|.. +.....   
T Consensus       300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se~s-I-s~~I~~~~~-----~~a~~~L~~-~~~~~~---  368 (441)
T TIGR00657       300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETS-I-SFTVDKEDA-----DQAKTLLKS-ELNLSA---  368 (441)
T ss_pred             CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCce-E-EEEEEHHHH-----HHHHHHHHH-HHHhcC---
Confidence            3566777766443  79999999999999999987654333211 1 344443210     111222211 111100   


Q ss_pred             CccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEEE
Q 024087          103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE  148 (272)
Q Consensus       103 ~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~  148 (272)
                        ..  .+....+.+.|.+.|.   ++||++++|.++|++.|+||....
T Consensus       369 --~~--~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       369 --LS--SVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             --cc--eEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence              00  1122345667888654   789999999999999999997765

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=91.68  E-value=3.7  Score=43.35  Aligned_cols=113  Identities=16%  Similarity=0.253  Sum_probs=72.2

Q ss_pred             CCeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCC
Q 024087           25 ADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA  101 (272)
Q Consensus        25 ~~~t~V~V~s~---DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~  101 (272)
                      ++.+.|+|.+.   .+||++.++..+|.+.|++|.-...++.. .-+ .|.|...+.     +...+.|.+.+.....  
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe-~sI-sf~V~~~d~-----~~av~~L~~~f~~el~--  383 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE-YSI-SFCVPQSDA-----AKAKRALEEEFALELK--  383 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC-ceE-EEEEeHHHH-----HHHHHHHHHHHHHHhc--
Confidence            46778888765   68999999999999999999766554322 212 355543211     1233444444432111  


Q ss_pred             CCccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEEE
Q 024087          102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE  148 (272)
Q Consensus       102 ~~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~  148 (272)
                      ......+  ....+...|.+.|.   ++||+++++..+|.+.|+||....
T Consensus       384 ~~~~~~i--~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is  431 (819)
T PRK09436        384 EGLLEPL--EVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA  431 (819)
T ss_pred             cCCcceE--EEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence            0000011  12234667888886   789999999999999999998654

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=91.44  E-value=1.2  Score=42.99  Aligned_cols=58  Identities=10%  Similarity=0.123  Sum_probs=45.5

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee-CCeeEEEEEEEeCCCCCCCCCHH
Q 024087          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPK  175 (272)
Q Consensus       115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~-g~rv~dvFyVtd~~~G~~i~d~~  175 (272)
                      ..|.|-+...|+||.|+++-.+|+.+|+|+.+.+---. +....-+|||.-  .|. ..|+.
T Consensus       296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~--eg~-~~d~~  354 (386)
T PRK10622        296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV--QAN-LRSAE  354 (386)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE--eCC-CCCHH
Confidence            36667777889999999999999999999999998744 445788888854  464 34443

>PLN02551 aspartokinase

Probab=91.40  E-value=7.2  Score=39.07  Aligned_cols=112  Identities=13%  Similarity=0.127  Sum_probs=67.2

Q ss_pred             CCeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCC
Q 024087           25 ADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA  101 (272)
Q Consensus        25 ~~~t~V~V~s~---DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~  101 (272)
                      ++.+.|+|.+.   +.+|+++++...|.++|++|.--.  |...-  -.|.|...+-..  .+...+.+++.+.....  
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sSe~s--Is~~v~~~~~~~--~~~i~~~l~~l~~el~~--  435 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVS--ISLTLDPSKLWS--RELIQQELDHLVEELEK--  435 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--ccCCE--EEEEEehhHhhh--hhhHHHHHHHHHHHhhc--
Confidence            45678888776   589999999999999999998663  32211  135554322111  01111122222111100  


Q ss_pred             CCccceeeeCCCCceeEEEEEcC--CCcchHHHHHHHHHhCCCcEEEEEE
Q 024087          102 PSLRSSVGVMPTEEHTSIEFTGT--DRPGLFSEVCAVLADLHCNVVNAEI  149 (272)
Q Consensus       102 ~~~~~~v~~~~~~~~T~Iev~~~--DRpGLL~~It~vL~~~g~~I~~A~i  149 (272)
                         ...+.  -..+...|.|.|.  .+||+++++..+|.+.|+||....-
T Consensus       436 ---~~~V~--v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsq  480 (521)
T PLN02551        436 ---IAVVN--LLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQ  480 (521)
T ss_pred             ---CCeEE--EeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEe
Confidence               01111  1234556777765  6899999999999999999976543

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=91.39  E-value=0.31  Score=34.63  Aligned_cols=45  Identities=20%  Similarity=0.395  Sum_probs=34.1

Q ss_pred             ceeEEEEEcC----CCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087          115 EHTSIEFTGT----DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (272)
Q Consensus       115 ~~T~Iev~~~----DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd  164 (272)
                      ....|.|.|+    |.||+++.+++.|++.|++|....  |+   ..+.|.|..
T Consensus         5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S~---~~~~ilV~~   53 (65)
T PF13840_consen    5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--SE---ISISILVKE   53 (65)
T ss_dssp             EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--ES---SEEEEEEEG
T ss_pred             CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--Ee---eeEEEEEeH
Confidence            3557777777    899999999999999999997765  43   356666654

>PRK06349 homoserine dehydrogenase; Provisional

Probab=91.38  E-value=0.48  Score=46.04  Aligned_cols=52  Identities=19%  Similarity=0.297  Sum_probs=42.3

Q ss_pred             CCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087          113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (272)
Q Consensus       113 ~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd  164 (272)
                      ....+.|.+...|+||.|++|+.+|.++|++|.+.......+....++++|+
T Consensus       345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~  396 (426)
T PRK06349        345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH  396 (426)
T ss_pred             hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence            3446789999999999999999999999999998765443335567788887

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=91.15  E-value=1.2  Score=39.03  Aligned_cols=48  Identities=15%  Similarity=0.237  Sum_probs=40.1

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEE
Q 024087           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNV   73 (272)
Q Consensus        26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V   73 (272)
                      ....+.+.-.|+||.+..+..+|.++|+||-..++..  .+|.++-+..|
T Consensus       147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v  196 (208)
T TIGR00719       147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI  196 (208)
T ss_pred             CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence            3445667779999999999999999999999999986  57888766554

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=90.93  E-value=1.6  Score=44.99  Aligned_cols=66  Identities=18%  Similarity=0.242  Sum_probs=47.6

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~-gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      -...|.|.+.||+|+|.+++++|+..+.||.+....++ ++.+.-.|.+.-      .+-..+..|...|...
T Consensus       626 f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v------~n~~~L~~i~~~l~~~  692 (701)
T COG0317         626 YPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV------KNLNHLGRVLARLKQL  692 (701)
T ss_pred             eEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE------CcHHHHHHHHHHHhcC
Confidence            45689999999999999999999999999999998885 444433333332      2234556666666553

>PRK09181 aspartate kinase; Validated

Probab=90.92  E-value=7.6  Score=38.46  Aligned_cols=104  Identities=13%  Similarity=0.222  Sum_probs=67.1

Q ss_pred             CeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCC
Q 024087           26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (272)
Q Consensus        26 ~~t~V~V~s~---DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~  102 (272)
                      +.+.|+|.+.   +.+|++.++..+|.+.|++|.  .+.+...  --.|.|...  .     ...+.+.+.|.....  .
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~~--sis~~v~~~--~-----~~~~~~~~~L~~~~~--~  394 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNAN--TITHYLWGS--L-----KTLKRVIAELEKRYP--N  394 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecCc--EEEEEEcCC--h-----HHHHHHHHHHHHhcC--C
Confidence            6777888655   689999999999999999998  3444321  123555432  1     112333333433211  0


Q ss_pred             CccceeeeCCCCceeEEEEEcCC--CcchHHHHHHHHHhCCCcEEEEE
Q 024087          103 SLRSSVGVMPTEEHTSIEFTGTD--RPGLFSEVCAVLADLHCNVVNAE  148 (272)
Q Consensus       103 ~~~~~v~~~~~~~~T~Iev~~~D--RpGLL~~It~vL~~~g~~I~~A~  148 (272)
                         ..+.   ..+..+|.+.|..  +||+.+++..+|.+.|+||....
T Consensus       395 ---~~i~---~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~  436 (475)
T PRK09181        395 ---AEVT---VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH  436 (475)
T ss_pred             ---ceEE---ECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE
Confidence               0111   1345678888765  89999999999999999997654

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=90.85  E-value=2  Score=32.00  Aligned_cols=30  Identities=23%  Similarity=0.510  Sum_probs=24.2

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEE
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEI  149 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i  149 (272)
                      ++.+.-+||||=|.+++.+|.  +.||....-
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y   32 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNY   32 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEE
Confidence            578889999999999999999  556654433

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06545 prephenate dehydrogenase; Validated

Probab=90.64  E-value=1  Score=42.58  Aligned_cols=52  Identities=17%  Similarity=0.284  Sum_probs=43.6

Q ss_pred             CCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087          113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (272)
Q Consensus       113 ~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd  164 (272)
                      ...++.|.|.-+||||-|++|+..|.+.|+||.+.+|.-..+....++.+.-
T Consensus       287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~  338 (359)
T PRK06545        287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF  338 (359)
T ss_pred             CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence            3567899999999999999999999999999999999665566666666654

>PRK07431 aspartate kinase; Provisional

Probab=90.52  E-value=6.2  Score=39.87  Aligned_cols=111  Identities=16%  Similarity=0.212  Sum_probs=68.1

Q ss_pred             CCeEEEEEE-ecCCCcHHHHHHHHHHhCCceEEEEEEEe-cC--CEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCC
Q 024087           25 ADATVIKVD-SVNKHGILLQVIQVLNDVNLVIKKAYISS-DG--GWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASF  100 (272)
Q Consensus        25 ~~~t~V~V~-s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~g--g~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~  100 (272)
                      ++...|++. .++++|+++++...|+++|++|..-..+. .+  |..--.|.+...+-      .....+.+.|....+ 
T Consensus       437 ~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~~------~~~~~~l~~l~~~~~-  509 (587)
T PRK07431        437 RNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDR------EAAQKVLRELAKQLP-  509 (587)
T ss_pred             CCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHHH------HHHHHHHHHHHHhcC-
Confidence            456666664 56789999999999999999998765532 12  22222355443110      111222222322111 


Q ss_pred             CCCccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEEE
Q 024087          101 APSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE  148 (272)
Q Consensus       101 ~~~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~  148 (272)
                       .   .++  .-..+...|.+.|.   .+||+++++.++|.+.|++|....
T Consensus       510 -~---~~i--~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~  554 (587)
T PRK07431        510 -G---AEV--EDGPAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA  554 (587)
T ss_pred             -C---ceE--EEeCCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence             0   011  11234567888886   889999999999999999996654

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=90.39  E-value=3.8  Score=31.24  Aligned_cols=58  Identities=12%  Similarity=0.113  Sum_probs=41.0

Q ss_pred             EeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCC
Q 024087           20 DNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGK   79 (272)
Q Consensus        20 ~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~   79 (272)
                      ++....+.+-+.+..+|+||-|+++..+|.+.|+|+.+-.-.-  ...|-+ .|+|. .+|.
T Consensus         7 ~~~~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y-~FfVD-ieg~   66 (90)
T cd04931           7 ENSNKNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEY-EFFIN-LDKK   66 (90)
T ss_pred             cccCCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceE-EEEEE-EEcC
Confidence            3444445577777779999999999999999999998766442  345555 35554 3454

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=90.18  E-value=1.5  Score=30.96  Aligned_cols=38  Identities=21%  Similarity=0.260  Sum_probs=29.8

Q ss_pred             CCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEE
Q 024087           36 NKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNV   73 (272)
Q Consensus        36 DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V   73 (272)
                      |+||.|.++++++...|+||.+-.+..  +++..--++.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v   40 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVV   40 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEE
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEE
Confidence            789999999999999999999999986  55654433333

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=90.04  E-value=0.2  Score=37.61  Aligned_cols=31  Identities=19%  Similarity=0.217  Sum_probs=28.1

Q ss_pred             EEEEEecC-CCcHHHHHHHHHHhCCceEEEEE
Q 024087           29 VIKVDSVN-KHGILLQVIQVLNDVNLVIKKAY   59 (272)
Q Consensus        29 ~V~V~s~D-rpGLl~~v~~vL~d~gl~I~~A~   59 (272)
                      +|+|.+++ +.|++++++++|+++|+||.+-+
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~   32 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIR   32 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence            48999999 99999999999999999997644

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=89.33  E-value=1.1  Score=38.10  Aligned_cols=66  Identities=18%  Similarity=0.268  Sum_probs=49.1

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEE-EeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEI-WTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i-~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~  190 (272)
                      .+.+.-.|.||.|+.++..|+..|.||.+..+ .|......-+=.++.   |    |+..+++|.++|......
T Consensus         6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g----~~~~~EQi~kQL~kLidV   72 (163)
T COG0440           6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---G----DEQVLEQIIKQLNKLIDV   72 (163)
T ss_pred             EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---C----CcchHHHHHHHHHhhccc
Confidence            67788899999999999999999999999887 455544444444544   3    345667787787765544

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=88.93  E-value=0.53  Score=33.43  Aligned_cols=36  Identities=17%  Similarity=0.158  Sum_probs=31.1

Q ss_pred             CCCeEEEEEEec----CCCcHHHHHHHHHHhCCceEEEEE
Q 024087           24 CADATVIKVDSV----NKHGILLQVIQVLNDVNLVIKKAY   59 (272)
Q Consensus        24 ~~~~t~V~V~s~----DrpGLl~~v~~vL~d~gl~I~~A~   59 (272)
                      +.++..|+|.++    |.||+++++.+.|++.|++|+-..
T Consensus         3 ~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is   42 (65)
T PF13840_consen    3 EEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS   42 (65)
T ss_dssp             ESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred             cCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence            356889999998    799999999999999999998666

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=88.83  E-value=2.7  Score=39.88  Aligned_cols=37  Identities=24%  Similarity=0.332  Sum_probs=32.1

Q ss_pred             CceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE
Q 024087          114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW  150 (272)
Q Consensus       114 ~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~  150 (272)
                      .....|.|.-+||||.|++++.++++.|.||....-.
T Consensus       303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~  339 (380)
T TIGR01127       303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHD  339 (380)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence            3445899999999999999999999999999887543

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=88.30  E-value=0.74  Score=34.04  Aligned_cols=47  Identities=13%  Similarity=0.314  Sum_probs=36.1

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cC--CEEEEEEEEEcC
Q 024087           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DG--GWFMDVFNVIDC   76 (272)
Q Consensus        30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~g--g~~~dvF~V~d~   76 (272)
                      |.+.++-||-.|++++-+|..+|.-|++|.|..  .+  .|=+--|.+.+.
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~   53 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH   53 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC
Confidence            456788999999999999999999999999974  33  344434444443

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=87.67  E-value=1.6  Score=43.64  Aligned_cols=66  Identities=15%  Similarity=0.298  Sum_probs=45.9

Q ss_pred             CCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHH
Q 024087          113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKE  182 (272)
Q Consensus       113 ~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~  182 (272)
                      ..+.+.+=+.-.|+||.+..|+.+|.+.++||....+......-..+..+ .  ...++. ++.++.|++
T Consensus       449 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i-~--~D~~v~-~~~l~~i~~  514 (526)
T PRK13581        449 KPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVL-S--VDDPVP-EEVLEELRA  514 (526)
T ss_pred             eCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEE-E--CCCCCC-HHHHHHHhc
Confidence            34555566667999999999999999999999999887654333333323 2  244554 566777764

>PRK08198 threonine dehydratase; Provisional

Probab=87.52  E-value=4.3  Score=38.92  Aligned_cols=38  Identities=21%  Similarity=0.399  Sum_probs=33.6

Q ss_pred             CCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE
Q 024087          113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW  150 (272)
Q Consensus       113 ~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~  150 (272)
                      ......+.|.-+||||-|+++..++.+.|.||....-.
T Consensus       324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            44567899999999999999999999999999987654

>PRK07431 aspartate kinase; Provisional

Probab=87.51  E-value=8.6  Score=38.84  Aligned_cols=102  Identities=17%  Similarity=0.230  Sum_probs=63.9

Q ss_pred             ecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccceeeeCC
Q 024087           34 SVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMP  112 (272)
Q Consensus        34 s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~~v~~~~  112 (272)
                      -.+++|+++++...|.+.|++|-.-..++ ..+..--.|.|...+-     +...+.|++ |.....  .   ..+  .-
T Consensus       278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~~-l~~~~~--~---~~i--~~  344 (587)
T PRK07431        278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAEA-IAPALG--G---AEV--LV  344 (587)
T ss_pred             CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHHH-HHHHcC--C---CcE--EE
Confidence            46789999999999999999998776543 2222222466643211     111222222 221110  0   111  11


Q ss_pred             CCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEEE
Q 024087          113 TEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE  148 (272)
Q Consensus       113 ~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~  148 (272)
                      ..+...|.+.|.   ++||+++++..+|++.|++|....
T Consensus       345 ~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~  383 (587)
T PRK07431        345 ETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS  383 (587)
T ss_pred             eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE
Confidence            234567888886   799999999999999999996655

>PRK09084 aspartate kinase III; Validated

Probab=87.41  E-value=12  Score=36.64  Aligned_cols=103  Identities=17%  Similarity=0.226  Sum_probs=63.4

Q ss_pred             CCeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCC
Q 024087           25 ADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA  101 (272)
Q Consensus        25 ~~~t~V~V~s~---DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~  101 (272)
                      ++...|+|.+.   +.+|++.++..+|.+.|++|.--.. +..   --.|.|...+-..-......+.+.+.|...    
T Consensus       304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s-se~---sIs~~i~~~~~~~~~~~~~~~~l~~el~~~----  375 (448)
T PRK09084        304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT-SEV---SVSLTLDTTGSTSTGDTLLTQALLTELSQL----  375 (448)
T ss_pred             CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec-cCc---EEEEEEechhhhhhhhHHHHHHHHHHHhcC----
Confidence            46778888765   6899999999999999999986652 221   124555532211100011223343334321    


Q ss_pred             CCccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCC
Q 024087          102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLH  141 (272)
Q Consensus       102 ~~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g  141 (272)
                          ..+.+  ..+...|.+.|.   ++||+++++..+|.+.+
T Consensus       376 ----~~i~~--~~~va~IsvvG~gm~~~~gv~arif~aL~~~n  412 (448)
T PRK09084        376 ----CRVEV--EEGLALVALIGNNLSKACGVAKRVFGVLEPFN  412 (448)
T ss_pred             ----CeEEE--ECCeEEEEEECCCcccCcChHHHHHHHHHhCC
Confidence                11111  234567888886   79999999999998743

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=86.90  E-value=3.2  Score=30.00  Aligned_cols=47  Identities=13%  Similarity=0.213  Sum_probs=33.2

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCC
Q 024087           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDG   78 (272)
Q Consensus        30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G   78 (272)
                      +.+..+|+||-|+++.+.|...|+|+.+-.-.-  ...|-+ .|+|. .+|
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y-~Ffvd-~~~   51 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEY-EFFVD-CEV   51 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceE-EEEEE-EEc
Confidence            444558999999999999999999998765432  344555 34443 344

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=86.39  E-value=6.7  Score=26.77  Aligned_cols=32  Identities=19%  Similarity=0.350  Sum_probs=26.8

Q ss_pred             EEEEEcC---CCcchHHHHHHHHHhCCCcEEEEEE
Q 024087          118 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEI  149 (272)
Q Consensus       118 ~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~i  149 (272)
                      .|.+.|.   +.||++++|.++|.+.|++|....-
T Consensus         3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~   37 (66)
T cd04922           3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ   37 (66)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence            5666664   8899999999999999999977643

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=86.36  E-value=1.4  Score=40.00  Aligned_cols=36  Identities=22%  Similarity=0.311  Sum_probs=32.0

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEe
Q 024087          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (272)
Q Consensus       116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T  151 (272)
                      ..+|.+.-.|-||+|++|+-+|+..|.||.+.-+--
T Consensus        77 rHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~  112 (309)
T KOG2663|consen   77 RHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL  112 (309)
T ss_pred             ceeEEEEecCCchHHHHHHHHHHhccCCchheeeec
Confidence            347888899999999999999999999999987754

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=85.98  E-value=7.3  Score=26.72  Aligned_cols=34  Identities=18%  Similarity=0.224  Sum_probs=27.8

Q ss_pred             EEEEEcC---CCcchHHHHHHHHHhCCCcEEEEEEEe
Q 024087          118 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWT  151 (272)
Q Consensus       118 ~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~i~T  151 (272)
                      .|.+.|.   ++||+++++.++|.+.|++|....-.+
T Consensus         3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~   39 (66)
T cd04919           3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA   39 (66)
T ss_pred             EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence            5666665   789999999999999999997764444

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=85.79  E-value=6.6  Score=29.13  Aligned_cols=62  Identities=13%  Similarity=0.114  Sum_probs=38.4

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      ++.|.-+|+||-|.+++.+|.  +.||....-.. ..+.+.-.+.+.-+++     ++..+.+.++|...
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~-----~~~~~~i~~~L~~~   65 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG-----AEELAELLEDLKSA   65 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc-----HHHHHHHHHHHHHC
Confidence            578889999999999999999  66776433332 2232222222322221     24567777788764

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=84.98  E-value=19  Score=35.41  Aligned_cols=108  Identities=16%  Similarity=0.214  Sum_probs=69.4

Q ss_pred             CCeEEEEEEecC---CCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCC
Q 024087           25 ADATVIKVDSVN---KHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA  101 (272)
Q Consensus        25 ~~~t~V~V~s~D---rpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~  101 (272)
                      ++.+.|+|.+..   ++|.++++.+.|.+.|++|..-.......+  -.|.|...+.     +...+.+++.......  
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~--  375 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA--  375 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc--
Confidence            466777776654   459999999999999999976654443333  2466654221     1233444444433210  


Q ss_pred             CCccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEEE
Q 024087          102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE  148 (272)
Q Consensus       102 ~~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~  148 (272)
                           ++.  .....-.|.+.|.   ..||..+.+.++|++.++||....
T Consensus       376 -----~v~--~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is  418 (447)
T COG0527         376 -----EVE--VEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS  418 (447)
T ss_pred             -----eEE--eeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence                 111  1122335666654   679999999999999999998876

>PRK11899 prephenate dehydratase; Provisional

Probab=84.65  E-value=7.1  Score=35.97  Aligned_cols=51  Identities=14%  Similarity=0.027  Sum_probs=37.2

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cC-CEEEEEEEEEcCCCC
Q 024087           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DG-GWFMDVFNVIDCDGK   79 (272)
Q Consensus        27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~g-g~~~dvF~V~d~~G~   79 (272)
                      .|.+.+..+|+||.|+++.++|++.|+|+.+-.-.- .+ .|-+ .|+|. -+|.
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y-~F~id-~eg~  246 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTAT-QFYAD-IEGH  246 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceE-EEEEE-EECC
Confidence            566666778999999999999999999998765442 23 3433 56654 5564

>PLN02317 arogenate dehydratase

Probab=84.61  E-value=6  Score=38.11  Aligned_cols=56  Identities=27%  Similarity=0.284  Sum_probs=44.1

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe---------------eEEEEEEEeCCCCCCCCCH
Q 024087          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR---------------AAAVVHVTDHSTGYAIKDP  174 (272)
Q Consensus       116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r---------------v~dvFyVtd~~~G~~i~d~  174 (272)
                      -|.|-+.-.|+||.|+++-.+|+..|+|+.+.+-.....+               ..-.|||.-  .|.. .|+
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~--eg~~-~d~  353 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDF--EASM-ADP  353 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEE--EcCc-CCH
Confidence            4778888899999999999999999999999997666544               456888854  3543 444

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=84.23  E-value=2.3  Score=42.50  Aligned_cols=65  Identities=17%  Similarity=0.270  Sum_probs=44.5

Q ss_pred             CceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHH
Q 024087          114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKE  182 (272)
Q Consensus       114 ~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~  182 (272)
                      .+++.+=+.-.||||.+..|+.+|.++++||....+......-..+..+ .  ...++. ++.++.|++
T Consensus       449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i-~--~D~~v~-~~~l~~i~~  513 (525)
T TIGR01327       449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLL-S--LDQPVP-DEVLEEIKA  513 (525)
T ss_pred             cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEE-E--cCCCCC-HHHHHHHhc
Confidence            4455555666899999999999999999999998887654332222222 2  134554 556677764

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK06382 threonine dehydratase; Provisional

Probab=84.02  E-value=8.1  Score=37.23  Aligned_cols=67  Identities=16%  Similarity=0.174  Sum_probs=47.4

Q ss_pred             CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE----e-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS----S-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        25 ~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~----T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      ...+.+.|.-+|+||-|.+++.+|.++|.||.+-...    . ..+...-+|.|...      ++...+.|.+.|...
T Consensus       328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~------~~~~~~~v~~~L~~~  399 (406)
T PRK06382        328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR------GQDHLDRILNALREM  399 (406)
T ss_pred             CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC------CHHHHHHHHHHHHHC
Confidence            4567899999999999999999999999999877654    1 23444445555432      123445667777554

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=83.57  E-value=1.3  Score=37.39  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=28.2

Q ss_pred             CeEEEEE--EecCCCcHHHHHHHHHHhCCceEEEEEE
Q 024087           26 DATVIKV--DSVNKHGILLQVIQVLNDVNLVIKKAYI   60 (272)
Q Consensus        26 ~~t~V~V--~s~DrpGLl~~v~~vL~d~gl~I~~A~I   60 (272)
                      |+-+|.+  ..++.||+++.+++.+++.|++|..+-.
T Consensus        92 G~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~  128 (167)
T COG2150          92 GLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS  128 (167)
T ss_pred             CCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence            4445554  5678999999999999999999997653

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=82.07  E-value=2.3  Score=35.99  Aligned_cols=34  Identities=18%  Similarity=0.238  Sum_probs=28.6

Q ss_pred             eeEEEEEc--CCCcchHHHHHHHHHhCCCcEEEEEE
Q 024087          116 HTSIEFTG--TDRPGLFSEVCAVLADLHCNVVNAEI  149 (272)
Q Consensus       116 ~T~Iev~~--~DRpGLL~~It~vL~~~g~~I~~A~i  149 (272)
                      .-+||+..  .+-||+|+.++..++++||+|..+-.
T Consensus        93 ~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~  128 (167)
T COG2150          93 LGVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS  128 (167)
T ss_pred             CeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence            34777776  45699999999999999999999854

>PRK06545 prephenate dehydrogenase; Validated

Probab=81.85  E-value=5.7  Score=37.56  Aligned_cols=38  Identities=18%  Similarity=0.291  Sum_probs=35.6

Q ss_pred             CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe
Q 024087           25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS   62 (272)
Q Consensus        25 ~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T   62 (272)
                      ..+..|.|.-+|+||-++++++.|...|+||.+-+|.-
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~  325 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILE  325 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeee
Confidence            56789999999999999999999999999999999964

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=81.55  E-value=6.6  Score=28.66  Aligned_cols=48  Identities=10%  Similarity=0.173  Sum_probs=34.6

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCC
Q 024087           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGK   79 (272)
Q Consensus        30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~   79 (272)
                      +.+..+|+||-|+++-.+|...|+|+.+-.-..  ...|-+. |+|. .+|.
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~-F~id-~e~~   52 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFE-IFVD-CECD   52 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEE-EEEE-EEcC
Confidence            344458999999999999999999998766543  4556654 4443 3454

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11898 prephenate dehydratase; Provisional

Probab=81.33  E-value=8  Score=35.56  Aligned_cols=56  Identities=20%  Similarity=0.166  Sum_probs=41.9

Q ss_pred             eeEEEEEcCC-CcchHHHHHHHHHhCCCcEEEEEEEeeCC-eeEEEEEEEeCCCCCCCCCH
Q 024087          116 HTSIEFTGTD-RPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDP  174 (272)
Q Consensus       116 ~T~Iev~~~D-RpGLL~~It~vL~~~g~~I~~A~i~T~g~-rv~dvFyVtd~~~G~~i~d~  174 (272)
                      .|.|-+.-.+ +||.|+++-.+|+++|+|+.+.+..-..+ ...-.|||.-  +|. ..++
T Consensus       196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~--eg~-~~~~  253 (283)
T PRK11898        196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDV--EGH-IDDV  253 (283)
T ss_pred             eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEE--Ecc-CCCH
Confidence            4566666654 69999999999999999999998866543 3667888854  464 3444

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=81.25  E-value=1.8  Score=43.11  Aligned_cols=42  Identities=21%  Similarity=0.147  Sum_probs=37.2

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd  164 (272)
                      .+||.+.||.|+..+|..+|...++|+...+|...|     .+|+.-
T Consensus         2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~-----~~~~~~   43 (520)
T PRK10820          2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG-----RIYLNF   43 (520)
T ss_pred             eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC-----eEEEeC
Confidence            589999999999999999999999999999997754     367754

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=81.08  E-value=27  Score=37.12  Aligned_cols=104  Identities=11%  Similarity=0.205  Sum_probs=64.4

Q ss_pred             CCeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCC
Q 024087           25 ADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA  101 (272)
Q Consensus        25 ~~~t~V~V~s~---DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~  101 (272)
                      ++.+.|+|.+.   +.+|+++++...|.+.|++|.--  ++...-+  .|.+.+.+  ....++.++.+.+.|....   
T Consensus       320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~sse~si--s~~i~~~~--~~~~~~~~~~l~~~l~~~~---  390 (861)
T PRK08961        320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSSETNV--TVSLDPSE--NLVNTDVLAALSADLSQIC---  390 (861)
T ss_pred             CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcCCCEE--EEEEcccc--ccchHHHHHHHHHHHhhcC---
Confidence            35678888644   58999999999999999999654  3322111  34444322  1111223444444444311   


Q ss_pred             CCccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcE
Q 024087          102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNV  144 (272)
Q Consensus       102 ~~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I  144 (272)
                           .+..  ..+..+|.|.|.   .+||+++.+..+|.+.++++
T Consensus       391 -----~i~~--~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~  429 (861)
T PRK08961        391 -----RVKI--IVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL  429 (861)
T ss_pred             -----cEEE--eCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence                 1111  123467888886   88999999999999977544

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=80.92  E-value=4.7  Score=40.32  Aligned_cols=61  Identities=18%  Similarity=0.346  Sum_probs=44.6

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (272)
Q Consensus        27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~   92 (272)
                      +..+.+...|+||.+..+..+|.+.++||...+++.  .||.++-++.+-.    .++ ++.+++|++
T Consensus       452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~----~v~-~~~l~~i~~  514 (526)
T PRK13581        452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDD----PVP-EEVLEELRA  514 (526)
T ss_pred             ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCC----CCC-HHHHHHHhc
Confidence            344455669999999999999999999999999886  6677876665432    222 345565553

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=80.50  E-value=13  Score=25.19  Aligned_cols=37  Identities=14%  Similarity=0.240  Sum_probs=28.0

Q ss_pred             CCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087          124 TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (272)
Q Consensus       124 ~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd  164 (272)
                      .++||+.++|.++|.+.|+++....  | ++ ..-.|++..
T Consensus        11 ~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~   47 (62)
T cd04890          11 NGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDD   47 (62)
T ss_pred             CcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEeh
Confidence            3789999999999999999998873  3 32 344566654

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=80.46  E-value=14  Score=24.23  Aligned_cols=27  Identities=26%  Similarity=0.330  Sum_probs=23.8

Q ss_pred             cCCCcchHHHHHHHHHhCCCcEEEEEE
Q 024087          123 GTDRPGLFSEVCAVLADLHCNVVNAEI  149 (272)
Q Consensus       123 ~~DRpGLL~~It~vL~~~g~~I~~A~i  149 (272)
                      ..|.||++.++.++|.++|++|.....
T Consensus         8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~   34 (61)
T cd04891           8 VPDKPGVAAKIFSALAEAGINVDMIVQ   34 (61)
T ss_pred             CCCCCcHHHHHHHHHHHcCCcEEEEEE
Confidence            478899999999999999999977654

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=80.12  E-value=7.5  Score=25.16  Aligned_cols=32  Identities=22%  Similarity=0.370  Sum_probs=25.9

Q ss_pred             EEEEEcCC---CcchHHHHHHHHHhCCCcEEEEEE
Q 024087          118 SIEFTGTD---RPGLFSEVCAVLADLHCNVVNAEI  149 (272)
Q Consensus       118 ~Iev~~~D---RpGLL~~It~vL~~~g~~I~~A~i  149 (272)
                      .|++.+.+   .+|.++++.++|.+++++|.....
T Consensus         2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~   36 (60)
T cd04868           2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ   36 (60)
T ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence            45556555   899999999999999999976643

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	272
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1u8s_A	192	Glycine cleavage system transcriptional repressor,	2e-07
1u8s_A	192	Glycine cleavage system transcriptional repressor,	7e-06
2nyi_A	195	Unknown protein; protein structure initiative, PSI	1e-05
2nyi_A	195	Unknown protein; protein structure initiative, PSI	5e-04
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	3e-04
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 2e-09
 Identities = 42/261 (16%), Positives = 78/261 (29%), Gaps = 78/261 (29%)

Query: 1   MDDEYAKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60
           +D  +       +  ++ I +       ++K     ++ +L     VL +V         
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLK-SKPYENCLL-----VLLNV--------- 253

Query: 61  SSDGGWFMDVFNVIDCDGKKI----RDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEH 116
             +     + FN + C   KI    R K+V D++     T                + +H
Sbjct: 254 -QNA-KAWNAFN-LSC---KILLTTRFKQVTDFLSAATTTH--------------ISLDH 293

Query: 117 TSIEFTGTDRPGLFS------------EVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164
            S+  T  +   L              EV         +++   I           HV  
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 165 HSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLS--------PPGIMNRERRLHQI 216
                      +L+TI E   NVL    ++RK    LS        P  ++        +
Sbjct: 353 ----------DKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILL-------SL 394

Query: 217 MFDDRDYERVEKAVGRVEDKS 237
           ++ D     V   V ++   S
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYS 415

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 2/129 (1%)

Query: 29  VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVID 88
           VI     ++ GI  +V++++      I  + I+  G  F  +  +        R +  + 
Sbjct: 8   VITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLP 67

Query: 89  YIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAE 148
            + Q+   D        S            +     D+ GL  +     A     + +  
Sbjct: 68  LLGQQH--DLITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLS 125

Query: 149 IWTHNDRAA 157
             T +    
Sbjct: 126 AQTISKDKL 134

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 44.7 bits (105), Expect = 7e-06
 Identities = 14/53 (26%), Positives = 27/53 (50%)

Query: 111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163
           M   +H  I   GTDRPG+ +EV  ++    CN++++ I         ++ ++
Sbjct: 1   MSLTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS 53

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Length = 195

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 1/126 (0%)

Query: 29  VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVID 88
           V+ V   ++ GI+      L +++  ++ + ++  GG F  +  V          +  ++
Sbjct: 7   VVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALE 66

Query: 89  YIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAE 148
                 +     A S+        T E+  +   G D  G+   V AVLA    N+V  E
Sbjct: 67  SALPGFQISTRRASSVAERHVSPDTREYE-LYVEGPDSEGIVEAVTAVLAKKGANIVELE 125

Query: 149 IWTHND 154
             T   
Sbjct: 126 TETLPA 131

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Length = 195

 Score = 39.3 bits (91), Expect = 5e-04
 Identities = 12/73 (16%), Positives = 28/73 (38%)

Query: 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLS 178
           +   G+DR G+  +    L ++  NV ++ +       A +V V+ ++    +      S
Sbjct: 8   VSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALES 67

Query: 179 TIKELLFNVLRGY 191
            +     +  R  
Sbjct: 68  ALPGFQISTRRAS 80

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 9/64 (14%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
             I   G D+ G+ +++  V++    N+    +   +      + +        +K+  +
Sbjct: 6   AGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF-------VKNTDK 58

Query: 177 LSTI 180
           L+T+
Sbjct: 59  LTTL 62

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Length = 91

 Score = 36.6 bits (85), Expect = 9e-04
 Identities = 9/44 (20%), Positives = 19/44 (43%)

Query: 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV 162
           I   G D+ G+ + V   +A+L  N+ +      ++    +  V
Sbjct: 8   ITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVV 51

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	272
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.8
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.74
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.88
2f06_A	144	Conserved hypothetical protein; structural genomic	98.69
2nyi_A	195	Unknown protein; protein structure initiative, PSI	98.34
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.32
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.28
1u8s_A	192	Glycine cleavage system transcriptional repressor,	98.18
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.16
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.77
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.68
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.65
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.64
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.58
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.49
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.44
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.43
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.43
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.35
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	97.21
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.18
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	97.14
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.02
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	97.0
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	96.99
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	96.99
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	96.9
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.89
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.67
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	96.43
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.21
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	96.15
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	96.06
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	95.95
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.35
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	95.09
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	94.95
2f06_A	144	Conserved hypothetical protein; structural genomic	94.89
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	94.78
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	94.3
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	93.21
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	92.96
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	92.7
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	92.62
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	92.42
3luy_A	329	Probable chorismate mutase; structural genomics, A	91.93
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	91.9
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	91.71
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	91.6
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	91.25
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	90.5
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	89.58
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	89.55
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	86.89
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	85.88
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	81.16
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	80.45

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.80  E-value=4.8e-19  Score=152.42  Aligned_cols=154  Identities=18%  Similarity=0.187  Sum_probs=115.2

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecC-CEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccC---CC
Q 024087           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDG-GWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS---FA  101 (272)
Q Consensus        26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~g-g~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~---~~  101 (272)
                      ..++|+|+|+|||||++.++++|+++|+||.+|++++.+ +++| .|.|..+..   ......+.|++.|.....   +.
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m-~~~v~~~~~---~~~~~~~~l~~~L~~~~~~~~~~   79 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVSLNAK---DGKLIQSALESALPGFQISTRRA   79 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEESSS---SSHHHHHHHHHHSTTCEEEEEEC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEE-EEEEEecCc---cchhHHHHHHHHHHHHHHhcCCe
Confidence            457999999999999999999999999999999999854 4555 788765421   222356778888865421   11


Q ss_pred             CCccceeeeCCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC--CeeEEEEEEEeCCCCCCCCCHHHHHH
Q 024087          102 PSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLST  179 (272)
Q Consensus       102 ~~~~~~v~~~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g--~rv~dvFyVtd~~~G~~i~d~~~l~~  179 (272)
                      ...+.... ......++|+|.|+|||||+++|+++|+++|+||..++..|.+  ++..++||++. .-+.|  ++.. +.
T Consensus        80 ~~~~~~~~-~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~-~~~~~--~~~~-~~  154 (195)
T 2nyi_A           80 SSVAERHV-SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGS-RVAFP--FPLY-QE  154 (195)
T ss_dssp             CCC----C-CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEE-EEEEE--GGGH-HH
T ss_pred             EEEEeCCc-CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEE-EEEcC--CCcc-HH
Confidence            11110001 3344678999999999999999999999999999999999998  77889999988 34444  2344 77


Q ss_pred             HHHHhcccc
Q 024087          180 IKELLFNVL  188 (272)
Q Consensus       180 i~~~L~~~L  188 (272)
                      |++.|..+.
T Consensus       155 l~~~l~~~a  163 (195)
T 2nyi_A          155 VVTALSRVE  163 (195)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777777544

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.74  E-value=2.3e-17  Score=141.07  Aligned_cols=153  Identities=12%  Similarity=0.125  Sum_probs=108.8

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhccc---CCCC
Q 024087           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDA---SFAP  102 (272)
Q Consensus        26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~---~~~~  102 (272)
                      ...+|+|.|+||||++++++++|+++|+||.++++++.+|.+.-.+.|..+.       ...+.|++.|....   .+..
T Consensus         5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-------~~~~~l~~~L~~~~~~~~~~~   77 (192)
T 1u8s_A            5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-------SNITRVETTLPLLGQQHDLIT   77 (192)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-------HHHHHHHHHHHHHHHHHTCEE
T ss_pred             cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-------CCHHHHHHHHHHHHHhcCCEE
Confidence            3578999999999999999999999999999999998666666588886431       23345555544321   1100


Q ss_pred             Cccceee---eCCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC----eeEEEEEEEeCCCCCCCCCHH
Q 024087          103 SLRSSVG---VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND----RAAAVVHVTDHSTGYAIKDPK  175 (272)
Q Consensus       103 ~~~~~v~---~~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~----rv~dvFyVtd~~~G~~i~d~~  175 (272)
                      ... ...   .......++|+|.|+||||++++|+.+|+++|+||..++..|.++    +..+.||++.. -+.|  ++.
T Consensus        78 ~~~-~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~-~~~~--~~~  153 (192)
T 1u8s_A           78 MMK-RTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAIS-ARVD--SGC  153 (192)
T ss_dssp             EEE-EECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEE-EEEC--TTS
T ss_pred             EEE-eCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEE-EeCC--CCC
Confidence            000 000   123446789999999999999999999999999999999999984    68899999873 3333  233


Q ss_pred             HHHHHHHHhccccc
Q 024087          176 RLSTIKELLFNVLR  189 (272)
Q Consensus       176 ~l~~i~~~L~~~L~  189 (272)
                      .++.|++.|..+..
T Consensus       154 ~~~~l~~~l~~~~~  167 (192)
T 1u8s_A          154 NLMQLQEEFDALCT  167 (192)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            45677787776544

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.88  E-value=5.6e-08  Score=91.44  Aligned_cols=132  Identities=13%  Similarity=0.050  Sum_probs=91.6

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccC-CCCCc
Q 024087           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS-FAPSL  104 (272)
Q Consensus        26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~-~~~~~  104 (272)
                      ...+|+|.|+|||||.+.++++|+++|+||.++..+..+|+|.-...+.-+.+. ..    .+.|++.|..... +..  
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-~~----~~~l~~~l~~~~~~~~~--   83 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-AD----GPALRHDVEAAIRKVGL--   83 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-HT----SHHHHHHHHHHHHHTTC--
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-CC----HHHHHHHHHHHHHHcCe--
Confidence            457899999999999999999999999999999999988877655555432211 11    1344444433210 010  


Q ss_pred             cceeee------CCCCceeEEEEEcCC-CcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087          105 RSSVGV------MPTEEHTSIEFTGTD-RPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (272)
Q Consensus       105 ~~~v~~------~~~~~~T~Iev~~~D-RpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd  164 (272)
                      ...+..      .....+..+.|.+.| +||++.+|+.+|+++|+||.....-+......--|++.-
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~  150 (415)
T 3p96_A           84 DVSIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSV  150 (415)
T ss_dssp             EEEEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEEC
T ss_pred             EEEEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeC
Confidence            011110      133457899999999 999999999999999999988887774333333377743

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.69  E-value=1.1e-06  Score=70.92  Aligned_cols=130  Identities=18%  Similarity=0.200  Sum_probs=83.4

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccce
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSS  107 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~~  107 (272)
                      ..++|..+|+||.++++++.|++.|+||..-.+.......+-.|.+.        +.   +..++.|.....     ...
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~--------d~---~~a~~~L~~~G~-----~v~   70 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS--------DP---DKAYKALKDNHF-----AVN   70 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES--------CH---HHHHHHHHHTTC-----CEE
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC--------CH---HHHHHHHHHcCC-----eEe
Confidence            57888999999999999999999999999877753221111123321        11   233444443210     000


Q ss_pred             eeeCCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccc
Q 024087          108 VGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV  187 (272)
Q Consensus       108 v~~~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~  187 (272)
                             ...++-+..+|+||.+++|+++|++.|+||........+.+...+|-+.|        .....+.|+++...+
T Consensus        71 -------~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d--------~~~A~~~L~~~g~~v  135 (144)
T 2f06_A           71 -------ITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN--------MDKCIEVLKEKKVDL  135 (144)
T ss_dssp             -------EEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC--------HHHHHHHHHHTTCEE
T ss_pred             -------eeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCC--------HHHHHHHHHHcCCEE
Confidence                   12367777889999999999999999999987765534556666554422        123345556554444


Q ss_pred             c
Q 024087          188 L  188 (272)
Q Consensus       188 L  188 (272)
                      +
T Consensus       136 ~  136 (144)
T 2f06_A          136 L  136 (144)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=98.34  E-value=2.2e-06  Score=73.01  Aligned_cols=72  Identities=17%  Similarity=0.192  Sum_probs=59.3

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (272)
Q Consensus       115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~  190 (272)
                      ..++|.|.|+|||||++.|+.+|+++||||..|++.+..++..-.|.|.. . +.  ..+.+++.|++.|..++..
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~-~-~~--~~~~~~~~l~~~L~~~~~~   75 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSL-N-AK--DGKLIQSALESALPGFQIS   75 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-S-SS--SSHHHHHHHHHHSTTCEEE
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEe-c-Cc--cchhHHHHHHHHHHHHHHh
Confidence            35789999999999999999999999999999999998888777888875 3 22  2345678899999876643

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.32  E-value=2.4e-06  Score=63.30  Aligned_cols=65  Identities=14%  Similarity=0.231  Sum_probs=48.3

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (272)
Q Consensus       115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~  186 (272)
                      ..+.|.+.++||||+|++|+.+|+++|+||......+..+...-.+.+.- . + +    ..++.|.+.|..
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~-~-~-~----~~l~~l~~~L~~   68 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSS-D-E-K----QDFTYLRNEFEA   68 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-S-S-C----CCHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEe-C-C-C----CCHHHHHHHHHH
Confidence            35689999999999999999999999999999999887765555554532 1 2 1    234556666654

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.28  E-value=5.5e-06  Score=60.58  Aligned_cols=64  Identities=16%  Similarity=0.306  Sum_probs=49.1

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (272)
Q Consensus       116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~  186 (272)
                      .+.|.+.+.||||+|++|+++|++.|+||.+..+.+.++.+...|.+.-       .+...++.+.++|..
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~-------~~~~~l~~l~~~L~~   68 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFV-------KNTDKLTTLMDKLRK   68 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEE-------SSHHHHHHHHHHHTT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEE-------CCHHHHHHHHHHHhc
Confidence            5689999999999999999999999999999999887764444443332       235566666666654

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=98.18  E-value=6.7e-06  Score=69.49  Aligned_cols=65  Identities=25%  Similarity=0.468  Sum_probs=54.1

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccc
Q 024087          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL  188 (272)
Q Consensus       116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L  188 (272)
                      .++|.|.|+|||||++.|+.+|+++|+||..+.+.+..+...-.|.|.. .       ....+.|++.|..++
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~-~-------~~~~~~l~~~L~~~~   70 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG-S-------PSNITRVETTLPLLG   70 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-C-------HHHHHHHHHHHHHHH
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEec-C-------CCCHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999998888777777765 2       135677777776544

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.16  E-value=2.3e-05  Score=57.90  Aligned_cols=50  Identities=20%  Similarity=0.200  Sum_probs=43.8

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcC
Q 024087           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDC   76 (272)
Q Consensus        27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~   76 (272)
                      ...|+|.++||||++++++++|+++|+||.+....+.+|.+.-.+.+.-+
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~   54 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD   54 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC
Confidence            46899999999999999999999999999999999877887767776433

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.77  E-value=0.00039  Score=57.50  Aligned_cols=110  Identities=16%  Similarity=0.184  Sum_probs=74.4

Q ss_pred             CCeEEEEEEe-cCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCC
Q 024087           25 ADATVIKVDS-VNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (272)
Q Consensus        25 ~~~t~V~V~s-~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~  102 (272)
                      ++.+.|+|.+ +|+||.++++..+|++.|++|..-..+. .+|..--.|.|...+.         ++..+.|..... ..
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~---------~~a~~~l~~~~~-~l   92 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDY---------KQTLEILSERQD-SI   92 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGH---------HHHHHHHHHSST-TT
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHH---------HHHHHHHHHHHH-Hc
Confidence            3678999985 9999999999999999999998766542 2454444566653211         222333433210 00


Q ss_pred             CccceeeeCCCCceeEEEEEcCC---CcchHHHHHHHHHhCCCcEEEE
Q 024087          103 SLRSSVGVMPTEEHTSIEFTGTD---RPGLFSEVCAVLADLHCNVVNA  147 (272)
Q Consensus       103 ~~~~~v~~~~~~~~T~Iev~~~D---RpGLL~~It~vL~~~g~~I~~A  147 (272)
                      .. ..+.  ...+...+.|.|.+   +||+++++.++|.+.|+||...
T Consensus        93 ~~-~~i~--~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~i  137 (167)
T 2re1_A           93 GA-ASID--GDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMI  137 (167)
T ss_dssp             TC-SEEE--EESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEE
T ss_pred             CC-ceEE--ecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEE
Confidence            01 1111  12356789999987   9999999999999999999884

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.68  E-value=0.0004  Score=50.39  Aligned_cols=65  Identities=14%  Similarity=0.253  Sum_probs=49.4

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      .+.|.|.++||||+|++++++|++.|+||....+.+.++.+...|.+.-.      ++...+.+.+.|...
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~------~~~~l~~l~~~L~~~   69 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK------NTDKLTTLMDKLRKV   69 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES------SHHHHHHHHHHHTTC
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC------CHHHHHHHHHHHhcC
Confidence            45788999999999999999999999999999998865555555555432      234556677777654

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.65  E-value=0.0033  Score=56.75  Aligned_cols=117  Identities=11%  Similarity=0.089  Sum_probs=69.4

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCc
Q 024087           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSL  104 (272)
Q Consensus        27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~  104 (272)
                      ..+++|.|+|||||.+++++.|+++|+||.+++.++  ..|+|.-...+.-+.+ ...    .+.|++.|.....   ..
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~~~----~~~L~~~f~~la~---~~   77 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-VIP----LASLRTGFGVIAA---KF   77 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-CCC----HHHHHHHHHHHHH---HT
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-CCC----HHHHHHHHHHHHH---Hc
Confidence            468999999999999999999999999999999985  4677665555543332 222    2334444432210   01


Q ss_pred             cceeeeCCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEe
Q 024087          105 RSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (272)
Q Consensus       105 ~~~v~~~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T  151 (272)
                      ...+.+........|-|-..-+---|.+|-....+-.+++.-+-|-+
T Consensus        78 ~m~~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  124 (288)
T 3obi_A           78 TMGWHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS  124 (288)
T ss_dssp             TCEEEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEE
T ss_pred             CCEEEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEc
Confidence            11222211122223434344444567777777776666654444444

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.64  E-value=0.0019  Score=58.68  Aligned_cols=49  Identities=24%  Similarity=0.354  Sum_probs=42.2

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEEE
Q 024087           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD--GGWFMDVFNVI   74 (272)
Q Consensus        26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~--gg~~~dvF~V~   74 (272)
                      ...+++|.|+|||||.+.+++.|+++|+||.+++.+++  .|+|.-...+.
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~   71 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIR   71 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEe
Confidence            45789999999999999999999999999999999975  67776555554

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.58  E-value=0.0036  Score=56.43  Aligned_cols=48  Identities=13%  Similarity=0.101  Sum_probs=40.7

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 024087           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVI   74 (272)
Q Consensus        27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~   74 (272)
                      ..+++|.|+|||||.+.+++.|+++|+||.+++.++  ..|+|.-...+.
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~   57 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFR   57 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEE
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEe
Confidence            478999999999999999999999999999999996  457665444444

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.49  E-value=0.0042  Score=51.79  Aligned_cols=110  Identities=16%  Similarity=0.180  Sum_probs=73.8

Q ss_pred             CCeEEEEE-EecCCCcHHHHHHHHHHhCCceEEEEEEEec---CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCC
Q 024087           25 ADATVIKV-DSVNKHGILLQVIQVLNDVNLVIKKAYISSD---GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASF  100 (272)
Q Consensus        25 ~~~t~V~V-~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~---gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~  100 (272)
                      ++.+.|+| ..+|+||.++++...|.+.|+||.--..++.   +|..--.|.+...         ..+...+.|..... 
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~---------d~~~a~~~l~~~~~-   82 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS---------DGRRAMEILKKLQV-   82 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH---------HHHHHHHHHHTTTT-
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc---------cHHHHHHHHHHHHH-
Confidence            46888888 4699999999999999999999987665542   3322223666531         12333444544211 


Q ss_pred             CCCccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEE
Q 024087          101 APSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNA  147 (272)
Q Consensus       101 ~~~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A  147 (272)
                      .... ..+..  ..+...|.|.|.   ++||+++++.++|++.|+||...
T Consensus        83 ~~~~-~~v~~--~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~i  129 (178)
T 2dtj_A           83 QGNW-TNVLY--DDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  129 (178)
T ss_dssp             TTTC-SEEEE--ESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEE
T ss_pred             hcCC-CeEEE--eCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEE
Confidence            0011 11221  234667888886   89999999999999999999884

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.44  E-value=0.0055  Score=55.37  Aligned_cols=49  Identities=10%  Similarity=0.104  Sum_probs=41.2

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 024087           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVI   74 (272)
Q Consensus        26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~   74 (272)
                      ...+++|.|+|||||.+++++.|+++|+||.+++.++  ..|+|.-...+.
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~   59 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFH   59 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEE
Confidence            3578999999999999999999999999999999996  457765444443

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.43  E-value=0.00043  Score=57.62  Aligned_cols=66  Identities=15%  Similarity=0.235  Sum_probs=50.7

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC-eeEE-EEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAA-VVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~-rv~d-vFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~  190 (272)
                      ..|.|...||||+|++|+.+|++.|+||.+..+.+..+ ...- +|-|..        +...+++|.++|.+....
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~--------d~~~leqI~kqL~Kl~dV   71 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG--------DEKVLEQIEKQLHKLVDV   71 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES--------CHHHHHHHHHHHHHSTTE
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec--------cHHHHHHHHHHHcCCCCE
Confidence            57899999999999999999999999999999875543 3333 344432        256788899998875543

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.43  E-value=0.0061  Score=54.95  Aligned_cols=114  Identities=11%  Similarity=0.024  Sum_probs=66.6

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCC
Q 024087           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS  103 (272)
Q Consensus        26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~  103 (272)
                      ...+++|.|+|||||.+++++.|+++|+||.+++.++  ..|+|.-...+.. .+..      .+.|++.|.....   .
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~~~~------~~~L~~~f~~la~---~   75 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEI-PVAG------VNDFNSAFGKVVE---K   75 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC-CC---------CHHHHHHHHHHG---G
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEc-CCCC------HHHHHHHHHHHHH---H
Confidence            4578999999999999999999999999999999985  4677664444432 2211      1244444433210   0


Q ss_pred             ccceeee--CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEe
Q 024087          104 LRSSVGV--MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (272)
Q Consensus       104 ~~~~v~~--~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T  151 (272)
                      ....+.+  .......++=+++..  --|.+|-....+-.+++.-+-|-+
T Consensus        76 ~~m~~~l~~~~~~~ri~vl~Sg~g--~nl~~ll~~~~~g~l~~~i~~Vis  123 (287)
T 3nrb_A           76 YNAEWWFRPRTDRKKVVIMVSKFD--HCLGDLLYRHRLGELDMEVVGIIS  123 (287)
T ss_dssp             GTCEEEEEETTCCCEEEEEECSCC--HHHHHHHHHHHHTSSCCEEEEEEE
T ss_pred             cCCeeEeeccCCCcEEEEEEeCCC--cCHHHHHHHHHCCCCCeEEEEEEe
Confidence            1112222  111223344444443  467777777766555544344444

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.35  E-value=0.0011  Score=54.71  Aligned_cols=110  Identities=13%  Similarity=0.145  Sum_probs=73.8

Q ss_pred             CCCeEEEEEEe-cCCCcHHHHHHHHHHhCCceEEEEEEEec---CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccC
Q 024087           24 CADATVIKVDS-VNKHGILLQVIQVLNDVNLVIKKAYISSD---GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS   99 (272)
Q Consensus        24 ~~~~t~V~V~s-~DrpGLl~~v~~vL~d~gl~I~~A~I~T~---gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~   99 (272)
                      .++.+.|+|.+ +|+||.++++..+|.+.|+||.--..+..   .|..--.|.|...+.     ++..+.|++ +.....
T Consensus        13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~-----~~a~~~L~~-~~~~~~   86 (167)
T 2dt9_A           13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFA-----QEALEALEP-VLAEIG   86 (167)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGH-----HHHHHHHHH-HHHHHC
T ss_pred             eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHH-----HHHHHHHHH-HHHHhC
Confidence            34788888877 89999999999999999999987554422   344444577764221     122233333 211111


Q ss_pred             CCCCccceeeeCCCCceeEEEEEcCC---CcchHHHHHHHHHhCCCcEEEE
Q 024087          100 FAPSLRSSVGVMPTEEHTSIEFTGTD---RPGLFSEVCAVLADLHCNVVNA  147 (272)
Q Consensus       100 ~~~~~~~~v~~~~~~~~T~Iev~~~D---RpGLL~~It~vL~~~g~~I~~A  147 (272)
                          .  .+..  ..+...+.|.|.+   +||+++.+.++|++.|+||...
T Consensus        87 ----~--~v~~--~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  129 (167)
T 2dt9_A           87 ----G--EAIL--RPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMI  129 (167)
T ss_dssp             ----C--EEEE--ECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE
T ss_pred             ----C--cEEE--eCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence                1  1111  2346688899886   9999999999999999999443

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=97.21  E-value=0.001  Score=54.11  Aligned_cols=59  Identities=17%  Similarity=0.111  Sum_probs=44.5

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~  186 (272)
                      .|+|.+.||+|||++|+++|++.++||..+++.+.|.     +|+.- +    ..+...+..+...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~-----i~~~~-~----~~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR-----IYLNF-A----ELEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE-----EEEEE-C----CCCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE-----EEEEE-E----eCCHHHHHHHHHHHHc
Confidence            5899999999999999999999999999999977632     56654 2    2234455555555544

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.18  E-value=0.00026  Score=64.17  Aligned_cols=37  Identities=14%  Similarity=0.306  Sum_probs=33.9

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEe
Q 024087          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (272)
Q Consensus       115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T  151 (272)
                      ..++|.+.|+||||+++.||.+|+++|+||..+.-.+
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~   45 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFD   45 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEe
Confidence            4578999999999999999999999999999988765

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=97.14  E-value=0.0013  Score=54.76  Aligned_cols=66  Identities=11%  Similarity=0.143  Sum_probs=50.8

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC-Ce-eEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DR-AAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g-~r-v~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~  190 (272)
                      ..|.+...||||+|++|+.+|++.|+||.+..+.+.. .. ..-+|-|..        +...+++|.++|.+....
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~--------d~~~leql~kQL~Kl~dV   72 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNKLIEV   72 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHHSTTE
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec--------cHHHHHHHHHHhcCCCCE
Confidence            4788999999999999999999999999999987544 23 333444433        256788899998875543

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.02  E-value=0.00061  Score=61.55  Aligned_cols=37  Identities=30%  Similarity=0.482  Sum_probs=33.8

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEe
Q 024087          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (272)
Q Consensus       115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T  151 (272)
                      ..++|.+.|+||||+++.||.+|+++|+||..+.-.+
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~   42 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFN   42 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeee
Confidence            4579999999999999999999999999999987754

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=97.00  E-value=0.0014  Score=61.17  Aligned_cols=48  Identities=27%  Similarity=0.323  Sum_probs=40.9

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEE
Q 024087          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV  162 (272)
Q Consensus       115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyV  162 (272)
                      ...+|.|.|+||||+++.|+.+|+++||||..+.-.+.+++..-...+
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~   58 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLV   58 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEE
Confidence            467999999999999999999999999999999988877765444444

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=96.99  E-value=0.0006  Score=61.60  Aligned_cols=37  Identities=22%  Similarity=0.397  Sum_probs=33.6

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEe
Q 024087          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (272)
Q Consensus       115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T  151 (272)
                      ..++|.+.|+||||+++.||.+|+++|+||..+.-.+
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~   41 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYN   41 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeee
Confidence            3568999999999999999999999999999987754

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=96.99  E-value=0.00064  Score=61.39  Aligned_cols=38  Identities=13%  Similarity=0.150  Sum_probs=34.2

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee
Q 024087          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH  152 (272)
Q Consensus       115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~  152 (272)
                      ..++|.+.|+||||+++.||.+|+++|+||..+.-.+.
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d   44 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDD   44 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeecc
Confidence            35789999999999999999999999999999887653

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=96.90  E-value=0.0011  Score=60.42  Aligned_cols=38  Identities=18%  Similarity=0.240  Sum_probs=34.5

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee
Q 024087          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH  152 (272)
Q Consensus       115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~  152 (272)
                      ..++|.+.|+||||+++.||.+|+++|+||..+.-.+.
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d   58 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSD   58 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEec
Confidence            35789999999999999999999999999999887754

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.89  E-value=0.0034  Score=53.46  Aligned_cols=67  Identities=13%  Similarity=0.282  Sum_probs=50.6

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE-eeCCeeEE-EEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW-THNDRAAA-VVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (272)
Q Consensus       116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~-T~g~rv~d-vFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~  190 (272)
                      ...|.|...|+||.|++|+.+|++.|+||.+..+. |....... +|-|.. .       ...+++|+++|..+...
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g-~-------e~~ieqL~kQL~KLidV   97 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG-D-------DKTIEQIEKQAYKLVEV   97 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE-C-------TTHHHHHHHHHTTSTTE
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEEC-C-------HHHHHHHHHHhcCcCce
Confidence            35899999999999999999999999999998886 44433333 344433 1       34678899999885543

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.67  E-value=0.016  Score=48.55  Aligned_cols=111  Identities=15%  Similarity=0.233  Sum_probs=72.4

Q ss_pred             CCeEEEEE-EecCCCcHHHHHHHHHHhCCceEEEEEEEe-c--CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCC
Q 024087           25 ADATVIKV-DSVNKHGILLQVIQVLNDVNLVIKKAYISS-D--GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASF  100 (272)
Q Consensus        25 ~~~t~V~V-~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~--gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~  100 (272)
                      ++.+.|+| .-+|+||+++++..+|++.|++|.--..+. .  .|..--.|.|...+..+  ..+.++.+.+.|..    
T Consensus        14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~--a~~~L~~~~~el~~----   87 (181)
T 3s1t_A           14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPA--AVEKLDSLRNEIGF----   87 (181)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHH--HHHHHHHTHHHHCC----
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHH--HHHHHHHHHHhcCc----
Confidence            46677776 457999999999999999999997655432 2  56555567776432211  01122222222211    


Q ss_pred             CCCccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEEE
Q 024087          101 APSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE  148 (272)
Q Consensus       101 ~~~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~  148 (272)
                           ..+..  ......|.+.|.   ++||+.+.+.++|++.|+||....
T Consensus        88 -----~~v~~--~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           88 -----SQLLY--DDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             -----SEEEE--ESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             -----ceEEE--eCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence                 11111  124557777766   899999999999999999998866

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=96.43  E-value=0.0051  Score=53.27  Aligned_cols=38  Identities=11%  Similarity=0.286  Sum_probs=31.2

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC
Q 024087          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN  153 (272)
Q Consensus       116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g  153 (272)
                      ...|++.+.||||+|++|+.+|+++++||...+..+..
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~   41 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK   41 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence            45789999999999999999999999999999998864

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.21  E-value=0.018  Score=47.66  Aligned_cols=130  Identities=14%  Similarity=0.160  Sum_probs=78.3

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-c-CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCcc
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-D-GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLR  105 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~-gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~  105 (272)
                      ..+.|...|+||+|++++++|++.|+||.+..+.. . .|...-+|.|.   +.    +..++.|.+.|......     
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~---~d----~~~leqI~kqL~Kl~dV-----   71 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---GD----EKVLEQIEKQLHKLVDV-----   71 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---SC----HHHHHHHHHHHHHSTTE-----
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe---cc----HHHHHHHHHHHcCCCCE-----
Confidence            46889999999999999999999999999998874 3 46666566665   22    45677777777764320     


Q ss_pred             cee-eeC----CCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHH
Q 024087          106 SSV-GVM----PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI  180 (272)
Q Consensus       106 ~~v-~~~----~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i  180 (272)
                      ..| ...    -..+...+.|.+..  .--.+|.++..-.+..|...     + .-.-++-+|+        ++++++.+
T Consensus        72 ~~V~r~~~~~~v~rEl~liKv~~~~--~~r~~i~~~~~~fra~ivdv-----~-~~~~~ie~tg--------~~~ki~~~  135 (164)
T 2f1f_A           72 LRVSELGQGAHVEREIMLVKIQASG--YGRDEVKRNTEIFRGQIIDV-----T-PSLYTVQLAG--------TSGKLDAF  135 (164)
T ss_dssp             EEEEEGGGSCEEEEEEEEEEEECCT--HHHHHHHHHHHHTTCEEEEE-----C-SSEEEEEEEE--------CHHHHHHH
T ss_pred             EEEEEcCCcccceeEEEEEEEECCc--ccHHHHHHHHHHcCCEEEEE-----C-CCEEEEEEeC--------CHHHHHHH
Confidence            001 010    01234466666542  12345555555555555443     2 2233455665        25566655


Q ss_pred             HHHhc
Q 024087          181 KELLF  185 (272)
Q Consensus       181 ~~~L~  185 (272)
                      -+.|.
T Consensus       136 ~~~l~  140 (164)
T 2f1f_A          136 LASIR  140 (164)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            55543

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=96.15  E-value=0.015  Score=49.76  Aligned_cols=122  Identities=16%  Similarity=0.237  Sum_probs=75.1

Q ss_pred             cCCCEEE-EEeCCCCCeEEEEEE-ecCCCcHHHHHHHHHHhCCceEEEEEEEe---cCCEEEEEEEEEcCCCCCCCcHHH
Q 024087           12 MNPPRVV-IDNNTCADATVIKVD-SVNKHGILLQVIQVLNDVNLVIKKAYISS---DGGWFMDVFNVIDCDGKKIRDKEV   86 (272)
Q Consensus        12 ~~~p~V~-i~n~~~~~~t~V~V~-s~DrpGLl~~v~~vL~d~gl~I~~A~I~T---~gg~~~dvF~V~d~~G~~~~~~~~   86 (272)
                      |..|.|+ |.  ..++.+.|+|. -+|+||+.+++..+|++.|+||---..++   .++...-.|.+...+..+  ..+.
T Consensus        21 mE~~vVtGIa--~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~~~--~~~~   96 (200)
T 4go7_X           21 MEDPILTGVA--HDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPA--AVEK   96 (200)
T ss_dssp             CCSCEEEEEE--EECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGHHH--HHHH
T ss_pred             cccCcEEEEE--ccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhHHH--HHHH
Confidence            5555542 22  23467888886 48999999999999999999998654432   345555567776432110  0011


Q ss_pred             HHHHHHHHhcccCCCCCccceeeeCCCCceeEEEEEc---CCCcchHHHHHHHHHhCCCcEEEEE
Q 024087           87 IDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAE  148 (272)
Q Consensus        87 ~~~I~~aL~~~~~~~~~~~~~v~~~~~~~~T~Iev~~---~DRpGLL~~It~vL~~~g~~I~~A~  148 (272)
                      ++.+...+..         ..+..  ..+...|.+.|   ..+||+.+.+.++|++.|+||..-.
T Consensus        97 l~~~~~~~~~---------~~v~~--~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs  150 (200)
T 4go7_X           97 LDSLRNEIGF---------SQLLY--DDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  150 (200)
T ss_dssp             HHTTHHHHCC---------SEEEE--ECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             HHHHHhhhce---------eeEEE--ecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE
Confidence            1222222211         11111  12233455554   5899999999999999999998764

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=96.06  E-value=0.16  Score=47.71  Aligned_cols=109  Identities=18%  Similarity=0.309  Sum_probs=72.5

Q ss_pred             CeEEEEEE-ecCCCcHHHHHHHHHHhCCceEEEEEEEe-c--CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCC
Q 024087           26 DATVIKVD-SVNKHGILLQVIQVLNDVNLVIKKAYISS-D--GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA  101 (272)
Q Consensus        26 ~~t~V~V~-s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~--gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~  101 (272)
                      +.+.|+|. .+|+||.++++...|.+.|++|.--...| .  .|...-.|.|...+.     ++..+.|++ +.....  
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~-----~~a~~~l~~-~~~~~~--  334 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDG-----RRAMEILKK-LQVQGN--  334 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTH-----HHHHHHHHH-HHTTTT--
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhH-----HHHHHHHHH-HHHHcC--
Confidence            56778887 58999999999999999999998765544 2  454444577654211     122233333 222211  


Q ss_pred             CCccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEE
Q 024087          102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNA  147 (272)
Q Consensus       102 ~~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A  147 (272)
                        . ..+..  ..+...+.|.|.   ++||+++.+..+|.+.|+||...
T Consensus       335 --~-~~v~~--~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  378 (421)
T 3ab4_A          335 --W-TNVLY--DDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  378 (421)
T ss_dssp             --C-SEEEE--ECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEE
T ss_pred             --C-ceEEE--eCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEE
Confidence              0 11221  234557888875   89999999999999999999843

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=95.95  E-value=0.027  Score=46.72  Aligned_cols=130  Identities=11%  Similarity=0.116  Sum_probs=79.3

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-c-CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCcc
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-D-GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLR  105 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~-gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~  105 (272)
                      ..+.|...|+||+|++++++|++.|+||.+..+.. . .|..--+|.|..   .    +..++.|.+.|....+.     
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~---d----~~~leql~kQL~Kl~dV-----   72 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG---P----DEIVEQITKQLNKLIEV-----   72 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE---C----HHHHHHHHHHHHHSTTE-----
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec---c----HHHHHHHHHHhcCCCCE-----
Confidence            46889999999999999999999999999998874 3 576665666652   1    45677787777764320     


Q ss_pred             cee-eeC----CCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHH
Q 024087          106 SSV-GVM----PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTI  180 (272)
Q Consensus       106 ~~v-~~~----~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i  180 (272)
                      ..| .+.    -..+...+.|.+..  .--.+|.++..-.+..|....      .-.-++-+|.        ++++++.+
T Consensus        73 ~~V~~~~~~~~v~rEl~liKv~~~~--~~r~~i~~~~~~fra~ivdv~------~~~~~ie~tg--------~~~ki~~~  136 (165)
T 2pc6_A           73 VKLIDLSSEGYVERELMLVKVRAVG--KDREEMKRLADIFRGNIIDVT------NELYTIELTG--------TRSKLDGF  136 (165)
T ss_dssp             EEEEEGGGSCEEEEEEEEEEEECCT--HHHHHHHHHHHHTTCEEEEEE------TTEEEEEEEE--------CHHHHHHH
T ss_pred             EEEEEcCCcceeeeEEEEEEEeCCc--ccHHHHHHHHHHcCCEEEEEc------CCEEEEEEcC--------CHHHHHHH
Confidence            001 010    01234466666542  123556666555555555442      1233455665        25666655


Q ss_pred             HHHhc
Q 024087          181 KELLF  185 (272)
Q Consensus       181 ~~~L~  185 (272)
                      -+.|.
T Consensus       137 ~~~l~  141 (165)
T 2pc6_A          137 LQAVD  141 (165)
T ss_dssp             HHHSC
T ss_pred             HHHhh
Confidence            55553

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.35  E-value=0.038  Score=47.84  Aligned_cols=48  Identities=17%  Similarity=0.115  Sum_probs=36.1

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-----CCEEEEEEEEE
Q 024087           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-----GGWFMDVFNVI   74 (272)
Q Consensus        27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~-----gg~~~dvF~V~   74 (272)
                      ...+.|...||||+|++++.+|++++.||...+.+++     +|.+.-.+.+.
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~   56 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   56 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEEC
Confidence            3578899999999999999999999999999999984     46665444444

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=95.09  E-value=0.04  Score=44.43  Aligned_cols=60  Identities=10%  Similarity=0.102  Sum_probs=43.7

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      .|.|.|.||+|++.+++++|++.++||....+.+. |.    +++.-+.    .+......|...+...
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~----i~~~~~~----~~~~~~~~L~~~l~~i   61 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR----IYLNFAE----LEFESFSSLMAEIRRI   61 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE----EEEEECC----CCHHHHHHHHHHHHHS
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE----EEEEEEe----CCHHHHHHHHHHHHcC
Confidence            47899999999999999999999999999999776 54    2222221    1223456666666554

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=94.89  E-value=0.083  Score=41.83  Aligned_cols=35  Identities=23%  Similarity=0.243  Sum_probs=31.6

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEe
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT  151 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T  151 (272)
                      ..|.|..+|+||.|++|+.+|++.|+||....+..
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~   41 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAE   41 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence            47888899999999999999999999999887754

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=94.78  E-value=0.18  Score=42.69  Aligned_cols=130  Identities=16%  Similarity=0.226  Sum_probs=82.0

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-e-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCc
Q 024087           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS-S-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSL  104 (272)
Q Consensus        27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~-T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~  104 (272)
                      .-.+.|...|+||.|++++++|+..|+||.+-.+. | +.|..--++.|...       +...+.|.+.|.....    .
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~-------e~~ieqL~kQL~KLid----V   97 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD-------DKTIEQIEKQAYKLVE----V   97 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC-------TTHHHHHHHHHTTSTT----E
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC-------HHHHHHHHHHhcCcCc----e
Confidence            35789999999999999999999999999998886 4 44655545666532       2356778877766422    0


Q ss_pred             ccee-eeCC------CCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHH
Q 024087          105 RSSV-GVMP------TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRL  177 (272)
Q Consensus       105 ~~~v-~~~~------~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l  177 (272)
                       ..| .+..      ..+...+.|.+...   -.+|.++..-.+..|....      .-.-++-+|.        +++++
T Consensus        98 -ikV~dl~~~~~~~v~REl~LiKV~~~~~---r~ei~~i~~~fra~ivDv~------~~s~~iE~tG--------~~~ki  159 (193)
T 2fgc_A           98 -VKVTPIDPLPENRVEREMALIKVRFDED---KQEIFQLVEIFRGKIIDVS------REGAIIEITG--------ARSKV  159 (193)
T ss_dssp             -EEEEECCSSGGGEEEEEEEEEEEECSSC---HHHHHHHHHHTTCEEEEEC------SSEEEEEEEE--------CHHHH
T ss_pred             -EEEEEecCCCCccceeEEEEEEEeCCcC---HHHHHHHHHHcCCEEEEEc------CCEEEEEEcC--------CHHHH
Confidence             011 1111      11345677776542   6777777766666665542      2233455665        25666


Q ss_pred             HHHHHHhc
Q 024087          178 STIKELLF  185 (272)
Q Consensus       178 ~~i~~~L~  185 (272)
                      +.+-+.|.
T Consensus       160 ~a~i~~l~  167 (193)
T 2fgc_A          160 EAFINLLP  167 (193)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHHhh
Confidence            66665554

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=94.30  E-value=0.52  Score=46.45  Aligned_cols=120  Identities=18%  Similarity=0.272  Sum_probs=78.1

Q ss_pred             CEEEEEeCCCCCeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHH
Q 024087           15 PRVVIDNNTCADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQ   91 (272)
Q Consensus        15 p~V~i~n~~~~~~t~V~V~s~---DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~   91 (272)
                      -.|.++    .+...|.|.+.   .+||+.+++..+|.+.|+||.--.  |..- -+ .|.|...+.     ++..+.|.
T Consensus       347 ~~v~~~----~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tSe~-~I-s~vI~~~d~-----~~Av~aLh  413 (600)
T 3l76_A          347 AEIIVE----KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TSEV-KV-SCVIDQRDA-----DRAIAALS  413 (600)
T ss_dssp             SEEEEE----CSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--ECSS-EE-EEEEEGGGH-----HHHHHHHH
T ss_pred             ceeEec----CCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cCCC-EE-EEEEcHHHH-----HHHHHHHH
Confidence            355554    36899999987   689999999999999999997655  3222 22 355554321     23455566


Q ss_pred             HHHhcccCCCCC------ccceeeeCCCCceeEEEEE-cCCCcchHHHHHHHHHhCCCcEEEE
Q 024087           92 QRLETDASFAPS------LRSSVGVMPTEEHTSIEFT-GTDRPGLFSEVCAVLADLHCNVVNA  147 (272)
Q Consensus        92 ~aL~~~~~~~~~------~~~~v~~~~~~~~T~Iev~-~~DRpGLL~~It~vL~~~g~~I~~A  147 (272)
                      +.+......+.+      .+.-.++....+.+.|.|. .+|+||+.++|...|++.|+||..-
T Consensus       414 ~~f~~~~t~~~~~~~~~~~~~v~Gia~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI  476 (600)
T 3l76_A          414 NAFGVTLSPPKNQTDTSHLPAVRGVALDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMI  476 (600)
T ss_dssp             HHTTCCBCCCCCCCC---CCSCCEEEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEE
T ss_pred             HhhcccCCCccccccccccCceEEEEeeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence            666443110000      0111123344556677765 4899999999999999999999544

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=93.21  E-value=0.21  Score=46.87  Aligned_cols=60  Identities=15%  Similarity=0.231  Sum_probs=48.2

Q ss_pred             cCCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEE
Q 024087           12 MNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI   74 (272)
Q Consensus        12 ~~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~   74 (272)
                      .|.|.|.+...   +...+.+.-.|+||.+..+..+|.++|+||...+..+.|+.++-++.|.
T Consensus       319 vn~p~~~~~~~---~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD  378 (404)
T 1sc6_A          319 VNFPEVSLPLH---GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIE  378 (404)
T ss_dssp             SSSCCCCCCCC---SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEE
T ss_pred             ecccccccCcC---CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcC
Confidence            45555543321   4567889999999999999999999999999999999999887666654

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=92.96  E-value=0.18  Score=47.68  Aligned_cols=59  Identities=22%  Similarity=0.294  Sum_probs=48.3

Q ss_pred             cCCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEE
Q 024087           12 MNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFN   72 (272)
Q Consensus        12 ~~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~   72 (272)
                      .|-|.|....  ..+...|.+.-.|.||.|.++..+|++.|+||..-...|.|.+++-+.-
T Consensus       330 Vn~p~~~~~~--~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d  388 (416)
T 3k5p_A          330 VNFPQVQLPP--RPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVME  388 (416)
T ss_dssp             SSSCCCCCCC--CSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE
T ss_pred             eeCCCcCCCC--CCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEE
Confidence            5666665532  3467899999999999999999999999999999998899888753333

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=92.70  E-value=0.47  Score=45.88  Aligned_cols=64  Identities=16%  Similarity=0.264  Sum_probs=47.9

Q ss_pred             CCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC--CeeEEEEEEEeCCCCCCCCCHHHHHHHHH
Q 024087          113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKE  182 (272)
Q Consensus       113 ~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g--~rv~dvFyVtd~~~G~~i~d~~~l~~i~~  182 (272)
                      ...++.|-+.-.|+||.+..|+.+|.++|+||...++....  +.+.-++.+ |    .++. ++.++.|++
T Consensus       451 ~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v-d----~~~~-~~~l~~l~~  516 (529)
T 1ygy_A          451 RAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL-D----QDVP-DDVRTAIAA  516 (529)
T ss_dssp             ESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE-S----SCCC-HHHHHHHHH
T ss_pred             cCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE-C----CCCC-HHHHHHHhc
Confidence            44577888889999999999999999999999999997654  334443433 2    3443 567777774

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=92.62  E-value=0.48  Score=42.38  Aligned_cols=58  Identities=17%  Similarity=0.138  Sum_probs=46.2

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEeCCCCCCCCCHH
Q 024087          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGYAIKDPK  175 (272)
Q Consensus       115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd~~~G~~i~d~~  175 (272)
                      ..|.|-+..+|+||-|+++-.+|+.+|+|+.+.+-.-...+ ..-+|||.-  .|.. .|+.
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~--eg~~-~d~~  257 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADF--IGHR-EDQN  257 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEE--ESCT-TSHH
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEE--ecCC-CcHH
Confidence            35677777789999999999999999999999998776655 778888854  4654 4443

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=92.42  E-value=0.72  Score=43.80  Aligned_cols=107  Identities=16%  Similarity=0.299  Sum_probs=68.1

Q ss_pred             CeEEEEEEe---cCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCC
Q 024087           26 DATVIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (272)
Q Consensus        26 ~~t~V~V~s---~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~  102 (272)
                      +.+.|+|.+   .+.||+++++..+|.+.|++|..-  .+....+  .|.|...+-.+ ....+.+.+++.+...     
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i--~~~~~~i--s~~V~~~d~~~-~~~~~~~el~~~~~~~-----  366 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM--PSGVDSV--SLVIEDCKLDG-KCDKIIEEIKKQCNPD-----  366 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB--CEETTEE--EEEEEHHHHTT-THHHHHHHHHHHSCCS-----
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE--ecCCCEE--EEEEecchHHH-HHHHHHHHHHHhcCCC-----
Confidence            566788886   589999999999999999999753  2322222  36665432111 0112333333332211     


Q ss_pred             CccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEEE
Q 024087          103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE  148 (272)
Q Consensus       103 ~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~  148 (272)
                          .+..  ..+...|.|.|.   .+||+.+.+.++|++.|+||....
T Consensus       367 ----~v~v--~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIs  409 (446)
T 3tvi_A          367 ----SIEI--HPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMID  409 (446)
T ss_dssp             ----EEEE--EEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             ----cEEE--eCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEE
Confidence                1111  123557888876   589999999999999999997653

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=91.93  E-value=1.1  Score=40.90  Aligned_cols=61  Identities=15%  Similarity=0.092  Sum_probs=43.9

Q ss_pred             eEEEEEcC--CCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEeCCCCCCCCCHHHHHHH
Q 024087          117 TSIEFTGT--DRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGYAIKDPKRLSTI  180 (272)
Q Consensus       117 T~Iev~~~--DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd~~~G~~i~d~~~l~~i  180 (272)
                      +.+-+...  |+||-|+++-.+|+.+|+|+.+.+-.....+ ..-+|||.-  .|.. .|+...+.|
T Consensus       207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~--eg~~-~d~~v~~AL  270 (329)
T 3luy_A          207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTL--DAAP-WEERFRDAL  270 (329)
T ss_dssp             EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEE--SSCT-TSHHHHHHH
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEE--eCCc-CCHHHHHHH
Confidence            44444444  7999999999999999999999998776665 567788754  4654 455433333

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=91.90  E-value=5.8  Score=38.91  Aligned_cols=118  Identities=17%  Similarity=0.184  Sum_probs=74.7

Q ss_pred             CCeEEEEEE-ecCCCcHHHHHHHHHHhCCceEEEEEEEe-c---CC--EEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           25 ADATVIKVD-SVNKHGILLQVIQVLNDVNLVIKKAYISS-D---GG--WFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        25 ~~~t~V~V~-s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~---gg--~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      ++.+.|+|. -+|+||+.+++.+.|++.|++|---..+. .   +|  ..--.|.|...         ..+...+.|...
T Consensus       442 ~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~---------d~~~a~~~l~~~  512 (600)
T 3l76_A          442 QDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEG---------DSSQAEAILQPL  512 (600)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHH---------HHHHHHHHHHHH
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHH---------HHHHHHHHHHHH
Confidence            467778774 48999999999999999999995433332 1   24  33335776542         223334444332


Q ss_pred             cCCCCCccceeeeCCCCceeEEEEEc---CCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeE
Q 024087           98 ASFAPSLRSSVGVMPTEEHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAA  157 (272)
Q Consensus        98 ~~~~~~~~~~v~~~~~~~~T~Iev~~---~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~  157 (272)
                      .. ... ...+..  ..+...|.+.|   ..+||+.+.+.++|++.|+||....  |-.-+..
T Consensus       513 ~~-~~~-~~~v~~--~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis--tSEi~Is  569 (600)
T 3l76_A          513 IK-DWL-DAAIVV--NKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA--TSEIKIS  569 (600)
T ss_dssp             TT-TST-TCEEEE--ECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE--ECSSEEE
T ss_pred             HH-hcC-CceEEE--eCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE--cCCceEE
Confidence            10 000 012222  23466788886   5999999999999999999997755  4443333

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=91.71  E-value=0.54  Score=41.70  Aligned_cols=59  Identities=20%  Similarity=0.212  Sum_probs=46.1

Q ss_pred             CceeEEEEEc---CCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEeCCCCCCCCCHHH
Q 024087          114 EEHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGYAIKDPKR  176 (272)
Q Consensus       114 ~~~T~Iev~~---~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd~~~G~~i~d~~~  176 (272)
                      ...|.|-+..   .|+||-|+++-..|+.+|+|+.+.+-.....+ ..-.|||.-  .  .+.|+..
T Consensus       184 ~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~--e--~~~d~~v  246 (267)
T 2qmw_A          184 QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA--D--SAITTDI  246 (267)
T ss_dssp             SSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE--S--CCSCHHH
T ss_pred             CCeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEE--e--cCCcHHH
Confidence            3456777777   89999999999999999999999998776654 677888854  3  3455543

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=91.60  E-value=0.4  Score=44.94  Aligned_cols=48  Identities=15%  Similarity=0.298  Sum_probs=41.9

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEE
Q 024087          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV  162 (272)
Q Consensus       115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyV  162 (272)
                      +...|-+.-.|+||.+..|+.+|.++|+||....+.+.|+.+.-++-+
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv  377 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI  377 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence            455677889999999999999999999999999999977777666655

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=91.25  E-value=0.91  Score=41.20  Aligned_cols=59  Identities=19%  Similarity=0.254  Sum_probs=46.0

Q ss_pred             ceeEEEEEcC-CCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEeCCCCCCCCCHHH
Q 024087          115 EHTSIEFTGT-DRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGYAIKDPKR  176 (272)
Q Consensus       115 ~~T~Iev~~~-DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd~~~G~~i~d~~~  176 (272)
                      ..|.|-+..+ |+||-|+++-.+|+.+|+|+.+.+-.-...+ ..-+|||.-  .|.. .|+..
T Consensus       200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~--eg~~-~d~~v  260 (313)
T 3mwb_A          200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDA--DGHA-TDSRV  260 (313)
T ss_dssp             EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEE--ESCT-TSHHH
T ss_pred             CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEE--eCCC-CcHHH
Confidence            4678888885 9999999999999999999999998766544 577888854  4654 45543

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=90.50  E-value=1.9  Score=40.53  Aligned_cols=51  Identities=18%  Similarity=0.299  Sum_probs=44.4

Q ss_pred             CCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEE
Q 024087          113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT  163 (272)
Q Consensus       113 ~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVt  163 (272)
                      ....+.|-+.-.|+||.|..|+.+|+++|+||..-...|.|+-+--++-|.
T Consensus       340 ~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~  390 (416)
T 3k5p_A          340 RPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEAD  390 (416)
T ss_dssp             CSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEEC
T ss_pred             CCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEec
Confidence            335679999999999999999999999999999999999998776666554

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=89.58  E-value=0.5  Score=44.93  Aligned_cols=52  Identities=15%  Similarity=0.301  Sum_probs=37.3

Q ss_pred             CCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee--CCeeEEEEEEEe
Q 024087          113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTD  164 (272)
Q Consensus       113 ~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~--g~rv~dvFyVtd  164 (272)
                      ....+-|.+...|+||.|++|+.+|.++|++|.+..=.-.  ++..+.++.+|.
T Consensus       356 ~~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th  409 (444)
T 3mtj_A          356 VRTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTH  409 (444)
T ss_dssp             CEEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEEC
T ss_pred             cceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEec
Confidence            3446788999999999999999999999999988643211  112356677776

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=89.55  E-value=2  Score=41.36  Aligned_cols=62  Identities=16%  Similarity=0.194  Sum_probs=48.0

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ   92 (272)
Q Consensus        26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~   92 (272)
                      .+..+.+.-+|+||.+..+..+|.++|+||...++..  .+|.++-++.+.++    + +++..+.|++
T Consensus       453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~----~-~~~~l~~l~~  516 (529)
T 1ygy_A          453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQD----V-PDDVRTAIAA  516 (529)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSC----C-CHHHHHHHHH
T ss_pred             CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCC----C-CHHHHHHHhc
Confidence            4567888999999999999999999999999999986  57777766665432    2 2446666654

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=86.89  E-value=2.3  Score=40.95  Aligned_cols=122  Identities=14%  Similarity=0.213  Sum_probs=76.1

Q ss_pred             CeEEEEEEe---cCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCC-cHHHHHHHHHHHhcccCCC
Q 024087           26 DATVIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIR-DKEVIDYIQQRLETDASFA  101 (272)
Q Consensus        26 ~~t~V~V~s---~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~-~~~~~~~I~~aL~~~~~~~  101 (272)
                      +.+.|+|.+   .++||+++++..+|.+.|++|..-. ++...   -.|.|...+..... .++..+.+.+.|....   
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~-sse~s---is~~v~~~~~~~~~~~~~~l~~~~~el~~~~---  412 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA-TSEVS---ISLTLDPSKLWSRELIQQELDHVVEELEKIA---  412 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE-EETTE---EEEEECCGGGSSSCCCHHHHHHHHHHHTTTS---
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEE-eCCCe---EEEEEechHhhhhhHHHHHHHHHHHHhCCCC---
Confidence            567788886   6799999999999999999998763 22221   13555432211110 1234455555554311   


Q ss_pred             CCccceeeeCCCCceeEEEEEcC--CCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087          102 PSLRSSVGVMPTEEHTSIEFTGT--DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (272)
Q Consensus       102 ~~~~~~v~~~~~~~~T~Iev~~~--DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd  164 (272)
                           .+..  ..+...|.+.|.  ..||+.+.+..+|.+.|+||...   +.|..-.++-+|.+
T Consensus       413 -----~v~~--~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mI---sqGsSei~Is~vV~  467 (510)
T 2cdq_A          413 -----VVNL--LKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMI---SQGASKVNISFIVN  467 (510)
T ss_dssp             -----EEEE--EEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEE---EECTTCSEEEEEEE
T ss_pred             -----eEEE--eCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEE---EecCCcceEEEEEe
Confidence                 1111  123457777777  78999999999999999999765   34444334334444

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=85.88  E-value=0.57  Score=38.07  Aligned_cols=38  Identities=21%  Similarity=0.318  Sum_probs=31.8

Q ss_pred             CCCceeEEEEEc-CCCcchHHHHHHHHHhCCCcEEEEEE
Q 024087          112 PTEEHTSIEFTG-TDRPGLFSEVCAVLADLHCNVVNAEI  149 (272)
Q Consensus       112 ~~~~~T~Iev~~-~DRpGLL~~It~vL~~~g~~I~~A~i  149 (272)
                      ...+.+.|.|.+ .|+||.+++|.++|+++|+||.....
T Consensus        21 ~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~   59 (167)
T 2re1_A           21 FDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQ   59 (167)
T ss_dssp             EECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEE
T ss_pred             ecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEc
Confidence            344567888885 89999999999999999999987654

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=81.16  E-value=0.98  Score=36.58  Aligned_cols=36  Identities=28%  Similarity=0.396  Sum_probs=30.6

Q ss_pred             CCceeEEEEEc-CCCcchHHHHHHHHHhCCCcEEEEE
Q 024087          113 TEEHTSIEFTG-TDRPGLFSEVCAVLADLHCNVVNAE  148 (272)
Q Consensus       113 ~~~~T~Iev~~-~DRpGLL~~It~vL~~~g~~I~~A~  148 (272)
                      ..+.+.|.|.+ +|+||.+++|..+|++.|+||....
T Consensus        13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~   49 (167)
T 2dt9_A           13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMII   49 (167)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEE
T ss_pred             eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEE
Confidence            44567788876 8999999999999999999998754

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=80.45  E-value=3.3  Score=33.03  Aligned_cols=98  Identities=16%  Similarity=0.135  Sum_probs=60.8

Q ss_pred             CeEEEEEEe---cCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCC
Q 024087           26 DATVIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP  102 (272)
Q Consensus        26 ~~t~V~V~s---~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~  102 (272)
                      +.+.|+|.+   +++||..+++..+|++.|++|..-.  +...  --.|.|.+.+        ....+.+.|...     
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~--~s~~--~Isf~v~~~~--------~~~~il~~l~~~-----   79 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVA--TSEV--GVSLTIDNDK--------NLPDIVRALSDI-----   79 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEE--CCSS--EEEEEESCCT--------THHHHHHHHTTT-----
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEE--ecCC--EEEEEECChH--------HHHHHHHHHhcc-----
Confidence            678888885   4789999999999999999986443  2221  1235554321        112222333321     


Q ss_pred             CccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEE
Q 024087          103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNA  147 (272)
Q Consensus       103 ~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A  147 (272)
                         ..+..  ..+...|.+.|.   ++||+.+++..+|+  |+||...
T Consensus        80 ---~~v~~--~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~i  120 (157)
T 3mah_A           80 ---GDVTV--DKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMI  120 (157)
T ss_dssp             ---EEEEE--EEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEE
T ss_pred             ---CeEEE--eCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEE
Confidence               11111  123457787775   68999999999999  8887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	272
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	1e-05
d1zpva1	83	d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Strepto	8e-05
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	0.002

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163
           +H  I   GTDRPG+ +EV  ++    CN++++ I         ++ ++
Sbjct: 4   QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS 52

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 38.2 bits (89), Expect = 8e-05
 Identities = 9/45 (20%), Positives = 20/45 (44%)

Query: 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163
           I   G D+ G+ + V   +A+L  N+ +      ++    +  V+
Sbjct: 5   ITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVS 49

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 4/44 (9%), Positives = 16/44 (36%)

Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVV 160
             +     ++ G+  ++  ++A+   N+  A+ +          
Sbjct: 2   RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGK 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	272
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.72
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.65
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.55
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.41
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.33
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	98.02
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.85
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.84
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.83
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.8
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.52
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.46
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.42
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.42
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.28
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.24
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.24
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.18
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.8
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	95.87
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	95.42
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	95.4
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	95.18
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	94.92
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	88.56
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	87.4
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	84.69
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	83.6
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	83.15
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	81.25
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	80.03

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.72  E-value=3.4e-08  Score=71.97  Aligned_cols=65  Identities=25%  Similarity=0.490  Sum_probs=54.0

Q ss_pred             CceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087          114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN  186 (272)
Q Consensus       114 ~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~  186 (272)
                      .++++|.+.|+||||++++|+++|+++||||..++..+.++...-++.|.- +       +..++.++..|..
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~-~-------~~~~~~l~~~L~~   67 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG-S-------PSNITRVETTLPL   67 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-C-------HHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEc-C-------cccHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999888888865 2       3345556655543

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.65  E-value=1.3e-07  Score=68.84  Aligned_cols=65  Identities=17%  Similarity=0.200  Sum_probs=53.3

Q ss_pred             CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087           25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET   96 (272)
Q Consensus        25 ~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~   96 (272)
                      ..+.+|+|.|+||||++++++++|+++|+||.+++..+.++.+.-.+.|.-+       +...+.+++.|..
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~-------~~~~~~l~~~L~~   67 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-------PSNITRVETTLPL   67 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-------HHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC-------cccHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999988877776632       2234556666644

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.55  E-value=3.4e-07  Score=65.92  Aligned_cols=50  Identities=20%  Similarity=0.221  Sum_probs=44.7

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCC
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCD   77 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~   77 (272)
                      .+|+|.|+||||++++++++|+++|+||.+....+.++.|.-.+.+.-+.
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~   52 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE   52 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEec
Confidence            57999999999999999999999999999999999888887777776544

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.41  E-value=8.8e-07  Score=63.64  Aligned_cols=48  Identities=19%  Similarity=0.297  Sum_probs=42.3

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd  164 (272)
                      ++|.+.|+||||++++||.+|+++|+||....-.+.++...-.+.+.-
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~   50 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSS   50 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEE
Confidence            589999999999999999999999999999999888887666666654

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.33  E-value=5e-07  Score=66.49  Aligned_cols=48  Identities=13%  Similarity=0.183  Sum_probs=37.1

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe----eEEEEEEE
Q 024087          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR----AAAVVHVT  163 (272)
Q Consensus       116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r----v~dvFyVt  163 (272)
                      ...|+|.|+|||||+++||++|+++|+||....-.|....    ....|+.+
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~   57 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIA   57 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEE
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEE
Confidence            4467788999999999999999999999999988776543    33455553

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.02  E-value=6.9e-06  Score=57.39  Aligned_cols=65  Identities=17%  Similarity=0.258  Sum_probs=53.2

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG  190 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~  190 (272)
                      +|.|.-+||||-|++++++|.+.|+||.+..+...++++.-+|.+.| .       ....+.|++.-..++..
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd-~-------~~a~~~L~~~G~~vl~~   65 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN-M-------DKCIEVLKEKKVDLLAA   65 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC-H-------HHHHHHHHHTTCEEECH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC-H-------HHHHHHHHHCCCEEEch
Confidence            57888999999999999999999999999999999998887777754 1       23456777776666654

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.85  E-value=1.7e-05  Score=56.10  Aligned_cols=48  Identities=10%  Similarity=0.255  Sum_probs=36.5

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC---eeEEEEEEEe
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND---RAAAVVHVTD  164 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~---rv~dvFyVtd  164 (272)
                      ..|+|.+.||||+|++|+.+|++.|+||......+...   ...-.|++.+
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~   52 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEI   52 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEE
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEc
Confidence            46899999999999999999999999999998776432   3566788876

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.84  E-value=6.4e-05  Score=53.15  Aligned_cols=63  Identities=16%  Similarity=0.260  Sum_probs=46.3

Q ss_pred             ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEeCCCCCCCCCHHHHHHHHH
Q 024087          115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGYAIKDPKRLSTIKE  182 (272)
Q Consensus       115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd~~~G~~i~d~~~l~~i~~  182 (272)
                      +.+.|-+.-.||||+|+.|+.+|.+.|+||...++.+.... .+-++.-+|    .++. ++.++.|++
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD----~~~~-~~vl~~I~~   65 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLD----QDVP-DDVRTAIAA   65 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEES----SCCC-HHHHHHHHH
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEcC----CCcc-HHHHHHHHc
Confidence            45688889999999999999999999999999999776533 233332334    2443 556677764

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.83  E-value=3.7e-05  Score=53.49  Aligned_cols=47  Identities=19%  Similarity=0.227  Sum_probs=42.9

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc
Q 024087           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVID   75 (272)
Q Consensus        29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d   75 (272)
                      +|.|.-+|+||-|++++++|.+.|+||...+.+..+++++-+|.+.|
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            57889999999999999999999999999999988889888888754

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.80  E-value=7.5e-05  Score=54.36  Aligned_cols=36  Identities=14%  Similarity=0.173  Sum_probs=32.6

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe
Q 024087           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS   62 (272)
Q Consensus        27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T   62 (272)
                      ...|.|.|+|||||+++++++|+++|+||.+..-.+
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~   41 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQT   41 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhccc
Confidence            347889999999999999999999999999987665

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.52  E-value=0.00044  Score=48.62  Aligned_cols=62  Identities=18%  Similarity=0.241  Sum_probs=47.4

Q ss_pred             eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHH
Q 024087           27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQR   93 (272)
Q Consensus        27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~a   93 (272)
                      ...+.+.-.|+||++.+++++|.+.|+||...++++  .+|.++-++.+   ++. + ++++.+.|++.
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v---D~~-~-~~~vl~~I~~~   66 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL---DQD-V-PDDVRTAIAAA   66 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE---SSC-C-CHHHHHHHHHH
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc---CCC-c-cHHHHHHHHcC
Confidence            467788889999999999999999999999999976  67777755554   222 2 24566666553

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.46  E-value=0.00026  Score=48.99  Aligned_cols=45  Identities=22%  Similarity=0.165  Sum_probs=38.4

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEE
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV  162 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyV  162 (272)
                      .|.|...||||.|++|+.+|++.|+||.+..+....+...-.|-|
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv   49 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV   49 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEE
Confidence            478889999999999999999999999999987777766555533

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.42  E-value=0.00038  Score=48.12  Aligned_cols=46  Identities=22%  Similarity=0.172  Sum_probs=39.3

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEE
Q 024087           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI   74 (272)
Q Consensus        29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~   74 (272)
                      ++.|...||||.|++++++|.+.|+||..-.+.....+.+-.+.|.
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~   50 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS   50 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEEC
Confidence            5899999999999999999999999999999887666666556543

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.00064  Score=48.32  Aligned_cols=47  Identities=15%  Similarity=0.310  Sum_probs=39.8

Q ss_pred             eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEE
Q 024087          116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV  162 (272)
Q Consensus       116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyV  162 (272)
                      ...|-+.-.|+||.|+.|+.+|++.|+||......+.++....+.-+
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i   57 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI   57 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEE
Confidence            35777788999999999999999999999999999888765555444

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.28  E-value=0.00036  Score=49.17  Aligned_cols=66  Identities=17%  Similarity=0.250  Sum_probs=51.0

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE-eeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW-THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~-T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~  189 (272)
                      ..|.+...|+||+|++|+.+|+..|+||.+..+. |.......+-.+..   |    +++.+++|..+|.....
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~---~----~~~~i~qi~kQL~Klvd   69 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN---G----PDEIVEQITKQLNKLIE   69 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE---E----CHHHHHHHHHHHHHSTT
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEE---C----CHHHHHHHHHHHhCCcC
Confidence            3678899999999999999999999999999997 55555555554544   1    35677888888876543

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.24  E-value=0.00011  Score=51.85  Aligned_cols=39  Identities=18%  Similarity=0.143  Sum_probs=30.4

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCE
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGW   66 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~   66 (272)
                      .-|.|.+.||||+|++++.++++.+.||......+ .+|.
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~   41 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGE   41 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSST
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCe
Confidence            35889999999999999999999999999999887 4443

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.00059  Score=47.89  Aligned_cols=65  Identities=18%  Similarity=0.243  Sum_probs=49.8

Q ss_pred             EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE-eeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087          118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW-THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (272)
Q Consensus       118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~-T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~  189 (272)
                      .|.+...|+||+|+.|+.+|+..|+||.+..+. |.......+-.+..   |    +++.+++|..+|.....
T Consensus         3 tlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~---~----~~~~i~qi~kQL~Klid   68 (76)
T d2f1fa1           3 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---G----DEKVLEQIEKQLHKLVD   68 (76)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---S----CHHHHHHHHHHHHHSTT
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEE---C----CHHHHHHHHHHHhCCCC
Confidence            678889999999999999999999999999997 55445555444444   2    35667788888876543

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.18  E-value=0.001  Score=46.87  Aligned_cols=66  Identities=15%  Similarity=0.332  Sum_probs=49.7

Q ss_pred             eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087          117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR  189 (272)
Q Consensus       117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~  189 (272)
                      ..|.+...|+||+|++|+.+|+..|+||.+..+....+. ...+-.+..   |    +++..++|..+|.....
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~---g----~~~~i~qi~kQl~Klid   70 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK---G----DDKTIEQIEKQAYKLVE   70 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE---E----CTTHHHHHHHHHTTSTT
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEE---c----CHHHHHHHHHHHhCCcC
Confidence            578899999999999999999999999999998665544 444444444   2    23456778888876543

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.0093  Score=41.94  Aligned_cols=42  Identities=12%  Similarity=0.201  Sum_probs=36.1

Q ss_pred             CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEE
Q 024087           26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWF   67 (272)
Q Consensus        26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~   67 (272)
                      +...+.+.-.|+||.+++++++|++.|+||......+.+...
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~   51 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMG   51 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCc
Confidence            346788888999999999999999999999999888855443

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=95.87  E-value=0.089  Score=36.44  Aligned_cols=62  Identities=18%  Similarity=0.231  Sum_probs=44.0

Q ss_pred             EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087           28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET   96 (272)
Q Consensus        28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~   96 (272)
                      ..+.+...|+||+|.+++++|+..|+||.+-.+..  +.|..=-++.+.. +      +...+.|.+-|..
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g-~------~~~i~qi~kQl~K   67 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG-D------DKTIEQIEKQAYK   67 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE-C------TTHHHHHHHHHTT
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEc-C------HHHHHHHHHHHhC
Confidence            46889999999999999999999999999988874  4554333344332 1      1244555555554

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.42  E-value=0.063  Score=37.22  Aligned_cols=49  Identities=18%  Similarity=0.172  Sum_probs=39.3

Q ss_pred             EEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEeCCCCC
Q 024087          119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGY  169 (272)
Q Consensus       119 Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd~~~G~  169 (272)
                      +-+...|+||-|+++-.+|+++|+|+.+.+-.-..++ ..-.|||.-  .|.
T Consensus         5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~--~g~   54 (80)
T d2qmwa2           5 LITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA--DSA   54 (80)
T ss_dssp             EEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE--SCC
T ss_pred             EEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE--ecC
Confidence            3344579999999999999999999999988755544 677899965  464

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=95.40  E-value=0.043  Score=38.03  Aligned_cols=61  Identities=16%  Similarity=0.214  Sum_probs=45.2

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-e-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS-S-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET   96 (272)
Q Consensus        29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~-T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~   96 (272)
                      .+.+...|+||.|+++++.|+..|+||.+-.+. | +.|..--++.+..   .    ++..+.|.+-|..
T Consensus         4 tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~---~----~~~i~qi~kQL~K   66 (77)
T d2pc6a2           4 IISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG---P----DEIVEQITKQLNK   66 (77)
T ss_dssp             EEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE---C----HHHHHHHHHHHHH
T ss_pred             EEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC---C----HHHHHHHHHHHhC
Confidence            578999999999999999999999999999887 4 4565544455442   1    3445566665654

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=95.18  E-value=0.062  Score=37.08  Aligned_cols=62  Identities=19%  Similarity=0.303  Sum_probs=43.6

Q ss_pred             EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-e-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087           29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS-S-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD   97 (272)
Q Consensus        29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~-T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~   97 (272)
                      .+.+...|+||+|++++++|+..|+||.+-.+. | ..|..--++.+.   |.    +...+.|.+-|...
T Consensus         3 tlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~---~~----~~~i~qi~kQL~Kl   66 (76)
T d2f1fa1           3 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---GD----EKVLEQIEKQLHKL   66 (76)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---SC----HHHHHHHHHHHHHS
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEE---CC----HHHHHHHHHHHhCC
Confidence            578889999999999999999999999998887 4 344432223322   22    34556666666543

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.92  E-value=0.016  Score=42.06  Aligned_cols=54  Identities=11%  Similarity=0.116  Sum_probs=43.7

Q ss_pred             CceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC-CeeEEEEEEEeCCCCC
Q 024087          114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGY  169 (272)
Q Consensus       114 ~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g-~rv~dvFyVtd~~~G~  169 (272)
                      ...|.|-+...|+||-|+++-.+|+++|+|+.+.+-.... ....-.|||.-  .|.
T Consensus        14 ~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~--eg~   68 (97)
T d1phza1          14 NGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYL--DKR   68 (97)
T ss_dssp             SCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECB--CGG
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEc--ccC
Confidence            3467888888999999999999999999999998876544 44677899843  465

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.56  E-value=0.22  Score=35.12  Aligned_cols=35  Identities=17%  Similarity=0.339  Sum_probs=30.7

Q ss_pred             CceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEEE
Q 024087          114 EEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE  148 (272)
Q Consensus       114 ~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~  148 (272)
                      .+.+.|.|.|.   ++||+++.|..+|++.|+||....
T Consensus        11 ~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          11 RNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            34678899875   999999999999999999998874

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.40  E-value=0.36  Score=34.43  Aligned_cols=55  Identities=11%  Similarity=0.079  Sum_probs=41.2

Q ss_pred             CCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCC
Q 024087           23 TCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGK   79 (272)
Q Consensus        23 ~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~   79 (272)
                      ...+.|-|.+..+|+||-|+++...|.++|+|+.+-.-.-  ...|-+ .|+|. .+|.
T Consensus        12 ~~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y-~F~id-~eg~   68 (97)
T d1phza1          12 NQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEY-EFFTY-LDKR   68 (97)
T ss_dssp             CSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEE-EEEEC-BCGG
T ss_pred             CCCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceE-EEEEE-cccC
Confidence            3456787888889999999999999999999998655432  345655 36663 5665

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=84.69  E-value=0.59  Score=31.96  Aligned_cols=48  Identities=17%  Similarity=0.126  Sum_probs=33.2

Q ss_pred             EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-c-CCEEEEEEEEEcCCCC
Q 024087           30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-D-GGWFMDVFNVIDCDGK   79 (272)
Q Consensus        30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~-gg~~~dvF~V~d~~G~   79 (272)
                      +.+--.|+||-|+++.+.+++.|+|+.+-.-.- . ..|-+ .|+|. -+|.
T Consensus         5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y-~F~id-~~g~   54 (80)
T d2qmwa2           5 LITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMY-RFFVQ-ADSA   54 (80)
T ss_dssp             EEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCE-EEEEE-ESCC
T ss_pred             EEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceE-EEEEE-EecC
Confidence            344457999999999999999999998765432 2 22333 36654 3454

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=83.60  E-value=1.2  Score=29.14  Aligned_cols=48  Identities=21%  Similarity=0.166  Sum_probs=34.7

Q ss_pred             EEEEEEe---cCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCC
Q 024087           28 TVIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCD   77 (272)
Q Consensus        28 t~V~V~s---~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~   77 (272)
                      ..|++.+   .++||+.+++..+|.+.|+||.--...+..-..  .|.|.+.+
T Consensus         2 a~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se~~I--s~~V~~~d   52 (67)
T d2hmfa2           2 CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNI--SFVIDEKD   52 (67)
T ss_dssp             EEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCSSEE--EEEEEGGG
T ss_pred             EEEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCccceE--EEEEeHHH
Confidence            3577777   589999999999999999999865544433222  36676543

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.15  E-value=0.49  Score=33.19  Aligned_cols=34  Identities=15%  Similarity=0.429  Sum_probs=30.9

Q ss_pred             CeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEE
Q 024087           26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAY   59 (272)
Q Consensus        26 ~~t~V~V~s~---DrpGLl~~v~~vL~d~gl~I~~A~   59 (272)
                      +.+.|+|.+.   ++||+++++..+|++.|+||.--.
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            6789999985   899999999999999999998665

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=81.25  E-value=1.6  Score=28.59  Aligned_cols=45  Identities=9%  Similarity=0.171  Sum_probs=32.4

Q ss_pred             EEEEEc---CCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087          118 SIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD  164 (272)
Q Consensus       118 ~Iev~~---~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd  164 (272)
                      .|.+.|   .++||+.+++..+|++.|+||....-.+.  ...-.|.|.+
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~S--e~~Is~~V~~   50 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSS--EVNISFVIDE   50 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSC--SSEEEEEEEG
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCc--cceEEEEEeH
Confidence            566766   48999999999999999999976543322  2344455554

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=80.03  E-value=0.64  Score=33.08  Aligned_cols=63  Identities=16%  Similarity=0.168  Sum_probs=41.7

Q ss_pred             ceeEEEEEc---CCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhc
Q 024087          115 EHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF  185 (272)
Q Consensus       115 ~~T~Iev~~---~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~  185 (272)
                      +-..|.+.|   .++||+++.|..+|++.|+||....-.+  ....-.|.|.+ .     +-++.+..|.+.+.
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~--Se~~Isf~V~~-~-----d~~~a~~~L~~~f~   79 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGS--SETNISLVVSE-E-----DVDKALKALKREFG   79 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECC--TTCCEEEEECS-T-----THHHHHHHHHHHHC
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccC--CcceEEEEEeH-H-----HHHHHHHHHHHHHH
Confidence            456888887   6999999999999999999998754322  22334455543 1     11234456666654