Citrus Sinensis ID: 024139

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270--
Protein Sequence
MEFDRLKSAATEDQMEMMVMMMQMDKFPEFYGACTNNDVAELLPADHTSATITTNSNIASSTPHFVDNNSPHIVSSPSFSNMLSNSNTSLNGTSITAAQGTSIPTYFSYSPNERYWRGGAGDSNSSTGVPLSQKQNSMAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPAGIGFPATLTTGNYPPIIGKEYQQPAVRNGALHYGDA
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHcccccHHHHHHHHHHHHHHHcHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHccccccccc
Coil and Loop (DISEMBL)
mefdrlksaATEDQMEMMVMMMQMdkfpefygactnndvaellpadhtsatittnsniasstphfvdnnsphivsspsfsnmlsnsntslngtsitaaqgtsiptyfsyspnerywrggagdsnsstgvplsqkqNSMAAMRETIFRVAAmqpihidpdsvkppkrrnvkiskdpqSVAARHRRERISERIRILQRlvpggtkmdtaSMLDEAIHYVKFLKTQVQSLERAAanrpagigfpatlttgnyppiigkeyqqpavrngalhygda
Flexible Loop (DISEMBL)
mefdrlksaateDQMEMMVMMMQMDKFPEFYGACTNNDVAELLPADHTSATITTNSNIASSTPHFVDNNSPHIVSSPSFSNMLSNSNTSLNGTSITAAQGTSIPTYFSYSPNERYWRGGAGDSNSSTGVPLSQKQNSMAAMRETIFRVAAMqpihidpdsvkppkrrnvkiskdpqsvaarhrreriseririlqrlvpggtkMDTASMLDEAIHYVKFLKTQVQSLERAAAnrpagigfpatlTTGNYPPIIGkeyqqpavrNGALHYGDA
Low Complexity Region (SEG)
MEFDRLKSAATedqmemmvmmmqmdKFPEFYGACTNNDVAELLPADHtsatittnsniasstPHFVDNNSPHIVsspsfsnmlsnsntslngtsITAAQGTSIPTYFSYSPNERYWRGGAGDSNSSTGVPLSQKQNSMAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDPQSVAArhrreriseririlqrlVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPAGIGFPATLTTGNYPPIIGKEYQQPAVRNGALHYGDA
Disordered region (IsUnstruct)
********************MMQMDKFPEFYGACTNNDVAELLPAD********************************************************IPTYFSYSP**RYW****************************IFRVAA***************************************RIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPAGIGFPATLTTGNYPPIIGKEYQ**************
Disordered Region (DISOPRED)
MEFDRL*S*********************************************************************************************************************************************************************************RISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQ***********************************************
Disordered Region (DISEMBL)
********AATEDQMEMMVMMMQMDKFPEFYGACTNNDVAELLPADHTSATITTNSNIASSTPHFVDNNSPHIVSSPSFSNMLSNSNTSLNGTSITAAQGTSIPTYFSYSPNERYWRGGA*****************MAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKIS***********RERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPAGIGFPATLTTGNYPPIIGKEYQQPAVRNGALHYGDA
Disordered Region (DISPRO)
*EFDRLKSAATEDQMEMMVMMMQMDKFPEFYGACTNNDVAELLPADHTSATITTNSNIASSTPHFVDNNSPHIVSSPSFSNMLSNSNTSLNGTSITAAQGTSIPTYFS************************************IFRVAAMQPIHIDPDS****************SV***HRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPAGIGFPATLTTGNYPPIIGKEYQ**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFDRLKSAATEDQMEMMVMMMQMDKFPEFYGACTNNDVAELLPADHTSATITTNSNIASSTPHFVDNNSPHIVSSPSFSNMLSNSNTSLNGTSITAAQGTSIPTYFSYSPNERYWRGGAGDSNSSTGVPLSQKQNSMAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPAGIGFPATLTTGNYPPIIGKEYQQPAVRNGALHYGDA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	272	2.2.26 [Sep-21-2011]
Q9FHA7	241	Transcription factor HEC1	yes	no	0.665	0.751	0.515	3e-37
Q9SND4	231	Transcription factor HEC2	no	no	0.665	0.783	0.486	3e-37
Q8S3D2	373	Transcription factor bHLH	no	no	0.444	0.324	0.536	4e-30
O81313	198	Transcription factor IND	no	no	0.327	0.449	0.674	1e-28
Q9LXD8	224	Transcription factor HEC3	no	no	0.360	0.437	0.714	6e-27
Q7XAQ6	215	Transcription factor LAX	no	no	0.224	0.283	0.709	3e-18
Q9M041	912	Transcription factor bHLH	no	no	0.198	0.059	0.740	8e-17
Q84WK0	352	Transcription factor bHLH	no	no	0.198	0.153	0.666	4e-16
Q9FJ00	307	Putative transcription fa	no	no	0.25	0.221	0.56	8e-16
Q9C707	298	Transcription factor bHLH	no	no	0.202	0.184	0.672	1e-15

>sp|Q9FHA7|HEC1_ARATH Transcription factor HEC1 OS=Arabidopsis thaliana GN=HEC1 PE=1 SV=1

 Score =  155 bits (392), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 113/219 (51%), Positives = 135/219 (61%), Gaps = 38/219 (17%)

Query: 17  MMVMMMQMDKFPEFYGACTNNDVAELLPADHTSATITTNSNIASSTPHFVDNNSPHIVSS 76
           M +MM QM+K PEF   C  N  +     DH +    T   + +ST H+  ++S  + + 
Sbjct: 6   MNMMMHQMEKLPEF---CNPN--SSFFSPDHNN----TYPFLFNST-HYQSDHS--MTNE 53

Query: 77  PSF---SNMLSNSNTSLNGTSITAAQGTSIPTYFSYSPNERYWRGGAGDSNSSTGVPLSQ 133
           P F   S +L+N +                    S SPN  Y    +   +       + 
Sbjct: 54  PGFRYGSGLLTNPS--------------------SISPNTAY---SSVFLDKRNNSNNNN 90

Query: 134 KQNSMAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDPQSVAARHRRERISERIRI 193
              +MAAMRE IFR+A MQPIHIDP++VKPPKRRNV+ISKDPQSVAARHRRERISERIRI
Sbjct: 91  NGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERISERIRI 150

Query: 194 LQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAA 232
           LQRLVPGGTKMDTASMLDEAIHYVKFLK QVQSLE  A 
Sbjct: 151 LQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEEQAV 189

Required for the female reproductive tract development and fertility.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SND4|HEC2_ARATH Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1

 Score =  155 bits (391), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/226 (48%), Positives = 130/226 (57%), Gaps = 45/226 (19%)

Query: 17  MMVMMMQMDKFPEFYGACTNNDVAELLPADHTSATITTNSNIASSTPHFVDNNSPHIVSS 76
           M +MM QM+K PE +     N     +        + + SN   + P F +    H+   
Sbjct: 8   MNMMMQQMEKLPEHFSNSNPNPNPHNI-------MMLSESN---THPFFFNPTHSHL--- 54

Query: 77  PSFSNMLSNSNTSLNGTSITAAQGTSIPTYFSYSPNER----YWRGGAGDSNSSTGVPLS 132
             F   + +    LN               F Y+P+        RGG  D+         
Sbjct: 55  -PFDQTMPHHQPGLN---------------FRYAPSPSSSLPEKRGGCSDN--------- 89

Query: 133 QKQNSMAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDPQSVAARHRRERISERIR 192
               +MAAMRE IFR+A MQPIHIDP+SVKPPKR+NV+ISKDPQSVAARHRRERISERIR
Sbjct: 90  ---ANMAAMREMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQSVAARHRRERISERIR 146

Query: 193 ILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPAGI 238
           ILQRLVPGGTKMDTASMLDEAIHYVKFLK QVQSLE  A     G+
Sbjct: 147 ILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEEHAVVNGGGM 192

Required for the female reproductive tract development and fertility.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S3D2|BH087_ARATH Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1

 Score =  132 bits (331), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 88/125 (70%), Gaps = 4/125 (3%)

Query: 108 SYSPNERYWRGGAGDSNSSTGVPLSQK----QNSMAAMRETIFRVAAMQPIHIDPDSVKP 163
           S  P     RGG+ + +      LS        ++A M+E I+R AA +P++   + V+ 
Sbjct: 208 SKKPRTEKERGGSSNISFQHSTCLSDNVEPDAEAIAQMKEMIYRAAAFRPVNFGLEIVEK 267

Query: 164 PKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQ 223
           PKR+NVKIS DPQ+VAAR RRERISE+IR+LQ LVPGGTKMDTASMLDEA +Y+KFL+ Q
Sbjct: 268 PKRKNVKISTDPQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQ 327

Query: 224 VQSLE 228
           V++LE
Sbjct: 328 VKALE 332

Arabidopsis thaliana (taxid: 3702)

>sp|O81313|IND_ARATH Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 72/89 (80%)

Query: 140 AMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVP 199
           AM+E  + +A MQP+ IDP +V  P RRNV+IS DPQ+V AR RRERISE+IRIL+R+VP
Sbjct: 87  AMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRIVP 146

Query: 200 GGTKMDTASMLDEAIHYVKFLKTQVQSLE 228
           GG KMDTASMLDEAI Y KFLK QV+ L+
Sbjct: 147 GGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

Transcription regulator required for seed dispersal. Involved in the differentiation of all three cell types required for fruit dehiscence. Acts as the key regulator in a network including SHP and ALC that controls specification of the valve margin. Works with ALC, SHP, and FUL to allow differentiation of the lignified valve layer, the spring-loaded mechanism of fruit that promotes opening. Regulates the expression of the YJ80 marker.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXD8|HEC3_ARATH Transcription factor HEC3 OS=Arabidopsis thaliana GN=HEC3 PE=1 SV=1

 Score =  121 bits (303), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 70/98 (71%), Positives = 81/98 (82%)

Query: 138 MAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRL 197
           + AM+E ++++AAMQ + IDP +VK PKRRNV+IS DPQSVAARHRRERISERIRILQRL
Sbjct: 92  LGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQRL 151

Query: 198 VPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRP 235
           VPGGTKMDTASMLDEAI YVKFLK Q++ L       P
Sbjct: 152 VPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNNTGYTP 189

Required for the female reproductive tract development and fertility.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XAQ6|LAX_ORYSJ Transcription factor LAX PANICLE OS=Oryza sativa subsp. japonica GN=LAX PE=1 SV=1

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 53/62 (85%), Gaps = 1/62 (1%)

Query: 170 KISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLER 229
           K+S DPQSVAAR RR RIS+R R+L+ LVPGG+KMDT SML++AIHYVKFLK QV +L +
Sbjct: 39  KLSTDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQV-TLHQ 97

Query: 230 AA 231
           AA
Sbjct: 98  AA 99

Transcription factor that seems to regulate organogenesis in postembryonic development. Involved in regulating shoot branching by controlling axillary meristem initiation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M041|BH140_ARATH Transcription factor bHLH140 OS=Arabidopsis thaliana GN=BHLH140 PE=4 SV=1

 Score = 87.8 bits (216), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/54 (74%), Positives = 45/54 (83%)

Query: 171 ISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQV 224
           +S DPQSVAAR RR RIS+R +ILQ +VPGG KMDT SMLDEAI YVKFLK Q+
Sbjct: 43  LSTDPQSVAARDRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQI 96

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WK0|BH085_ARATH Transcription factor bHLH85 OS=Arabidopsis thaliana GN=BHLH85 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 47/54 (87%)

Query: 174 DPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSL 227
           DPQS+ AR RRERI+ER+RILQ LVP GTK+D ++ML+EA+HYVKFL+ Q++ L
Sbjct: 275 DPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLL 328

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ00|BH086_ARATH Putative transcription factor bHLH086 OS=Arabidopsis thaliana GN=BHLH86 PE=4 SV=2

 Score = 84.3 bits (207), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 54/75 (72%), Gaps = 7/75 (9%)

Query: 160 SVKPPKRRNVKIS-------KDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDE 212
           S KP    N KI        KDPQS+AA++RRERISER+++LQ LVP GTK+D  +ML++
Sbjct: 189 SKKPSSGTNGKIKPKATTSPKDPQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEK 248

Query: 213 AIHYVKFLKTQVQSL 227
           AI YVKFL+ QV+ L
Sbjct: 249 AIGYVKFLQVQVKVL 263

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C707|BH083_ARATH Transcription factor bHLH83 OS=Arabidopsis thaliana GN=BHLH83 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 48/55 (87%)

Query: 173 KDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSL 227
           KDPQS+AA++RRERISER++ILQ LVP GTK+D  +ML++AI YVKFL+ QV+ L
Sbjct: 203 KDPQSLAAKNRRERISERLKILQELVPNGTKVDLVTMLEKAISYVKFLQVQVKVL 257

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
225458639	248	PREDICTED: transcription factor HEC1 [Vi	0.900	0.987	0.596	5e-67
255538274	274	transcription factor, putative [Ricinus	0.959	0.952	0.585	6e-67
224137546	265	predicted protein [Populus trichocarpa]	0.941	0.966	0.608	1e-66
224063507	261	predicted protein [Populus trichocarpa]	0.937	0.977	0.600	6e-63
357465537	271	Transcription factor HEC2 [Medicago trun	0.897	0.900	0.501	1e-52
255644916	242	unknown [Glycine max]	0.738	0.830	0.514	1e-48
224094310	239	predicted protein [Populus trichocarpa]	0.823	0.937	0.516	1e-46
225438732	252	PREDICTED: transcription factor HEC1 [Vi	0.430	0.464	0.864	3e-44
147768917	282	hypothetical protein VITISV_004454 [Viti	0.393	0.379	0.805	8e-44
356496900	251	PREDICTED: transcription factor HEC1-lik	0.794	0.860	0.501	1e-42

>gi|225458639|ref|XP_002282817.1| PREDICTED: transcription factor HEC1 [Vitis vinifera] gi|302142304|emb|CBI19507.3| unnamed protein product [Vitis vinifera]

 Score =  260 bits (664), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 164/275 (59%), Positives = 191/275 (69%), Gaps = 30/275 (10%)

Query: 1   MEFDRLKSAATEDQMEMMVMMMQMDKFPEFYGACTNNDVAELLPADHTSATITTNSNIAS 60
           M+ D LKSA  +    MM+   QMDK PEF G  T N++AEL        ++  +   ++
Sbjct: 1   MDIDLLKSAPEDQMEMMMM---QMDKLPEFCG--TYNEMAEL-------PSMGFSGGGSA 48

Query: 61  STPHFVDNNSPHIVSSPSFSNMLSNSNTSLNGTSITAAQGTSIPTYFSYSPNERYWRGG- 119
           + P   DN  PH V+SP+F N  S S  S NGT  T  Q  + P + + S   R WRG  
Sbjct: 49  TMPQIFDN--PH-VASPTFIN--SPSTISFNGT--TPPQEPTAPAFLTNSAVAR-WRGTG 100

Query: 120 --AGDSNSSTGVPLSQKQNSMAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDPQS 177
             +G  N ST    +QK+NSMAAMRE IFR+AAMQP+HIDP+SVKPPKRRNVKISKDPQS
Sbjct: 101 ELSGVCNLSTP---AQKRNSMAAMREMIFRIAAMQPVHIDPESVKPPKRRNVKISKDPQS 157

Query: 178 VAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPAG 237
           VAARHRRERISE+IRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPAG
Sbjct: 158 VAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPAG 217

Query: 238 IGFPATLTTGNYPPIIGKEYQQPAVRNGALHYGDA 272
           IGFP T++ G+Y PI  K+YQ         HY DA
Sbjct: 218 IGFPVTMSNGSYLPIT-KQYQP---SQNLHHYPDA 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538274|ref|XP_002510202.1| transcription factor, putative [Ricinus communis] gi|223550903|gb|EEF52389.1| transcription factor, putative [Ricinus communis]

 Score =  260 bits (664), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 167/285 (58%), Positives = 196/285 (68%), Gaps = 24/285 (8%)

Query: 1   MEFDRLKSA-ATEDQMEMMVMMMQMDKFPEFYGACTNNDVA-ELLPADHTSATITTNSNI 58
           ME D+L S+ ATEDQMEM++MM   DK P+F+GA   NDVA +L P        TT++  
Sbjct: 1   MEIDQLTSSTATEDQMEMIMMM---DKLPDFFGAY--NDVAHDLAPTTEFPGASTTSTTA 55

Query: 59  ASSTPHFVDNNSPHIVSSPSFSNMLSNSNTSLNGTSITAAQGTSIPTYFSYSPNERYWRG 118
            S+ PHF+  +SPHI SSPSF ++ S+   + N T +   Q  S P + S       WR 
Sbjct: 56  VSAIPHFM--SSPHIASSPSFMSLPSSVPFTNNNTPM---QDESTPPFTSNLAAAERWRD 110

Query: 119 GAGDSNSSTGVPLSQKQNSMAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDPQSV 178
                 ++     SQK+NSMAAMRE IFR+AAMQPIHIDP+SVKPPKRRNVKISKDPQSV
Sbjct: 111 MGEFPGANAYSTPSQKRNSMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSV 170

Query: 179 AARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRP--- 235
           AARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERA A+RP   
Sbjct: 171 AARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAQASRPSTS 230

Query: 236 ---AGIGFPATLTTGNYPPIIGKEYQQPA-----VRNGALHYGDA 272
               GIGFP  +++G+Y P +GK YQQ             HYGDA
Sbjct: 231 SSSTGIGFPIAMSSGSYFP-MGKAYQQQQNAHHHRHQNVQHYGDA 274

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137546|ref|XP_002327153.1| predicted protein [Populus trichocarpa] gi|222835468|gb|EEE73903.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (661), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 171/281 (60%), Positives = 194/281 (69%), Gaps = 25/281 (8%)

Query: 1   MEFDRLKSAATEDQMEMMVMMMQMDKFPEFYGACTNNDVAELL-PADHTSATITTNSNIA 59
           ME D LKSA TEDQ EMM+M+   DKFPEFYGAC  NDVA+ L P D   A   ++S   
Sbjct: 1   MEIDLLKSA-TEDQTEMMMMI---DKFPEFYGAC--NDVADHLSPTDQFLAASVSDS--- 51

Query: 60  SSTPHFVDNNSPHIVSSPSFSNMLSNSNTSLNGTSITAAQGTSIPTYFSYSPNERYWRG- 118
            S PHF  +N PH  + P F N+ S  + + N T I   Q  S P  F  +P+   WRG 
Sbjct: 52  -SVPHFNTDN-PHSANLPPFMNLPSTLSFNSNNTPI---QDQS-PRAFISNPSTSRWRGV 105

Query: 119 GAGDSNSSTGVPLSQKQNSMAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDPQSV 178
           G     ++     S+K+NSMAAMRE IFR+AAMQPIHIDP+SVKPPKRRNVKISKDPQSV
Sbjct: 106 GELPGTANDYATPSRKKNSMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSV 165

Query: 179 AARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRP--- 235
           AARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERA ANRP   
Sbjct: 166 AARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAQANRPTAT 225

Query: 236 AGIGFPATLTTGNYPPIIGK----EYQQPAVRNGALHYGDA 272
            GIGFP  +T+G+Y P +GK    +           HYGDA
Sbjct: 226 TGIGFPVAMTSGSYLP-VGKGCHQQPAHHHHHQNVQHYGDA 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063507|ref|XP_002301178.1| predicted protein [Populus trichocarpa] gi|222842904|gb|EEE80451.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (629), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 167/278 (60%), Positives = 195/278 (70%), Gaps = 23/278 (8%)

Query: 1   MEFDRLKSAATEDQMEMMVMMMQMDKFPEFYGACTNNDVAELL-PADHTSATITTNSNIA 59
           ME D+L+SA TEDQMEMM++M   DK PEFY +   NDVA+ L P +  +A+    SNI+
Sbjct: 1   MEIDQLRSA-TEDQMEMMMLM---DKLPEFYDSY--NDVADHLSPTEFLAASA---SNIS 51

Query: 60  SSTPHFVDNNSPHIVSSPSFSNMLSNSNTSLNGTSITAAQGTSIPTYFSYSPNERYWRGG 119
            S  HF  +N PH  SSP F N L ++ +S + ++ T  Q    P  F  SP+   WRG 
Sbjct: 52  IS--HFNTDN-PHNASSPPFMN-LQSTLSSNSNSTPTQDQS---PQDFFPSPSSSRWRGL 104

Query: 120 AGDSNSSTGVPLSQKQNSMAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDPQSVA 179
                ++     SQK+NSMA MRE IFR+AAMQPI IDP+SVKPPKRRNVKISKDPQSVA
Sbjct: 105 GELPEANDYATPSQKKNSMATMREMIFRIAAMQPIQIDPESVKPPKRRNVKISKDPQSVA 164

Query: 180 ARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRP---A 236
           ARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLER  ANRP    
Sbjct: 165 ARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERFQANRPTTTT 224

Query: 237 GIGFPATLTTGNYPPIIGKEYQQPAV--RNGALHYGDA 272
           GIGFP  +T+G+Y   +GK Y QP    R    +YGDA
Sbjct: 225 GIGFPVAMTSGSY-LAMGKGYHQPPARRRQNVQNYGDA 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465537|ref|XP_003603053.1| Transcription factor HEC2 [Medicago truncatula] gi|355492101|gb|AES73304.1| Transcription factor HEC2 [Medicago truncatula]

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 134/267 (50%), Positives = 176/267 (65%), Gaps = 23/267 (8%)

Query: 1   MEFDRLKSAATEDQMEMMVMMMQMDKFPEFYGACTNND-VAELLPADHTSATITTNSNIA 59
           M+ ++LKS+++  + ++ +M+M M + PEF  +  NN+ + +  P+D      +  SN  
Sbjct: 1   MDCNQLKSSSSSSEEQIDMMLMMMMQLPEFSSSNGNNNTINQFPPSDQQFYGTSNASNNT 60

Query: 60  SSTPHFVDNNSPHI--VSSPSFSNMLSNSNTSLN--------GTSITAAQGTSIPTYFSY 109
                 +DN    I   SS SF+++ S S T+ N         T +   Q  + P  FS 
Sbjct: 61  RPLADLIDNPPNQIPWSSSSSFTHLPSQSTTNTNTIYFTNNNSTPLMFQQQQTTPLMFSN 120

Query: 110 SPNERYWRGGAGDSNSSTGVPLSQKQNSMAAMRETIFRVAAMQPIHIDPDSVKPPKRRNV 169
           S NE      A ++N       S+K+NSMAAMRE IFR+AAMQPI+IDP+SVKPPKRRNV
Sbjct: 121 SSNE-----IAPNTNHYGTASPSEKRNSMAAMREMIFRIAAMQPIYIDPESVKPPKRRNV 175

Query: 170 KISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSL-E 228
           KISKDPQS+AARHRRERISE+IRILQR+VPGGTKMDTASMLDEAIHYVKFLKTQ++SL E
Sbjct: 176 KISKDPQSIAARHRRERISEKIRILQRMVPGGTKMDTASMLDEAIHYVKFLKTQLKSLQE 235

Query: 229 RAA---ANRP---AGIGFPATLTTGNY 249
           RA+   +NR    +G+GFP +L   NY
Sbjct: 236 RASGANSNRTVAGSGLGFPVSLPKPNY 262

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255644916|gb|ACU22958.1| unknown [Glycine max]

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/247 (51%), Positives = 154/247 (62%), Gaps = 46/247 (18%)

Query: 1   MEFDRLKSAATED-QMEMMVMMMQMDKFPEF----YGACTNNDVAELLPADHTSATITTN 55
           M+ D LK++ +++  M+MM+ MMQM+KFPEF    Y    N   A L P +      TT 
Sbjct: 1   MDVDILKTSTSDNISMDMMMTMMQMEKFPEFCEPFYNNNNNTSTAPLYPENELLINSTT- 59

Query: 56  SNIASSTPHFVDNNSPHIVSSPSFSNMLSNSNTSLNGTSITAAQGTSIPTYFSYSPNERY 115
                              + P FSN+++N N       IT    +S   +    P   +
Sbjct: 60  -------------------TLPVFSNVINNPNV------ITPPPSSS--NFIQQQPMTPH 92

Query: 116 WRGGAGDSNSSTGVPLSQKQNSMAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDP 175
                         P  +K+NS+AAMRE IFRVA MQPIHIDP+S+KPPKRRNVKISKDP
Sbjct: 93  LE------------PNLEKRNSVAAMREMIFRVAVMQPIHIDPESIKPPKRRNVKISKDP 140

Query: 176 QSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRP 235
           QSVAARHRRERISERI+ILQRLVPGGTKMDTASMLDEAIHYVKFLK QVQ+LE+A A+RP
Sbjct: 141 QSVAARHRRERISERIKILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRP 200

Query: 236 AG-IGFP 241
              +GFP
Sbjct: 201 LNVVGFP 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094310|ref|XP_002310136.1| predicted protein [Populus trichocarpa] gi|222853039|gb|EEE90586.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 125/242 (51%), Positives = 155/242 (64%), Gaps = 18/242 (7%)

Query: 1   MEFDRLKSAATEDQMEMMVMMMQMDKFPEFYGACTNNDVAELLPADHTSATITTNSNIAS 60
           M+ D +KS++ E+ M+MM +MMQM+K P+F     +N             +    ++I +
Sbjct: 1   MDVDMMKSSSGEENMDMMTVMMQMEKLPDFCSEPFHNTTNTSTILQEIQFSNGNPTSIVA 60

Query: 61  STPHFVDNNSPHIVSSPSFSNMLSNSNTSLNGTSITAA-----QGTSIPTYFSYSPNERY 115
           S P  + +N+PH  SSP F N    S     GT I        Q   +   F YS     
Sbjct: 61  SPP--IYHNNPH-ASSPPFINPPPCS-MPFMGTPIQEPMTPPLQHNMMANKFKYS----- 111

Query: 116 WRGGAGDSNSSTGVPLSQKQNSMAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDP 175
                  SN+++ +   +K+N  A +R+  FR+AAMQPIHIDP+SVKPPKRRNVKISKDP
Sbjct: 112 ----TPFSNANSFLSSIEKKNPTAEIRDMTFRIAAMQPIHIDPESVKPPKRRNVKISKDP 167

Query: 176 QSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRP 235
           QSVAARHRRERISER+RILQRLVPGGTKMDTASMLDEAIHYVKFLK QVQSLE+A AN P
Sbjct: 168 QSVAARHRRERISERMRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEQAGANTP 227

Query: 236 AG 237
            G
Sbjct: 228 NG 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438732|ref|XP_002277850.1| PREDICTED: transcription factor HEC1 [Vitis vinifera] gi|296082413|emb|CBI21418.3| unnamed protein product [Vitis vinifera]

 Score =  184 bits (468), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 102/118 (86%), Positives = 109/118 (92%), Gaps = 1/118 (0%)

Query: 130 PLSQKQNSMAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDPQSVAARHRRERISE 189
           P S+K+NSMAAMRE IF +A MQPIHIDP+SVKPPKRRNVKISKDPQSVAARHRRERISE
Sbjct: 109 PPSEKKNSMAAMREMIFSIAVMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISE 168

Query: 190 RIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPAG-IGFPATLTT 246
           RIRILQRLVPGGTKMDTASMLDEAIHYVKFLK QVQSLERA A+RP G +GFPAT T+
Sbjct: 169 RIRILQRLVPGGTKMDTASMLDEAIHYVKFLKNQVQSLERAGAHRPMGVVGFPATTTS 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768917|emb|CAN66981.1| hypothetical protein VITISV_004454 [Vitis vinifera]

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 91/113 (80%), Positives = 99/113 (87%), Gaps = 6/113 (5%)

Query: 116 WRGG---AGDSNSSTGVPLSQKQNSMAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKIS 172
           WRG    +G  N ST    +QK+NSMAAMRE IFR+AAMQP+HIDP+SVKPPKRRNVKIS
Sbjct: 49  WRGTGELSGVCNLSTP---AQKRNSMAAMREMIFRIAAMQPVHIDPESVKPPKRRNVKIS 105

Query: 173 KDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQ 225
           KDPQSVAARHRRERISE+IRILQRLVPGGTKMDTASMLDEAIHYV FLKTQ +
Sbjct: 106 KDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVXFLKTQTE 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496900|ref|XP_003517303.1| PREDICTED: transcription factor HEC1-like [Glycine max]

 Score =  179 bits (453), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 128/255 (50%), Positives = 161/255 (63%), Gaps = 39/255 (15%)

Query: 1   MEFDRLKSAATEDQMEMMVMMMQMDKFPEFYGACTNNDVAE------LLPADHTSATITT 54
           M+ D+LK++ ++  M+MM+MMMQM+KFPEF     NN+         L P +      TT
Sbjct: 1   MDVDKLKTSTSDSSMDMMMMMMQMEKFPEFCEPFYNNNTTTTTTTTLLYPENEYFLNSTT 60

Query: 55  NSNIASSTPHFVDNNSPHIVSSPSFSNMLSNSNTSLNGTSITAAQGTSIPTYFSYSPNER 114
                ++ P F + N+P++++ P          T +N    ++      P      PN  
Sbjct: 61  -----TTLPVFPNVNNPNVITPPP--------TTLINPPPPSSNFVLQQPMTPHLEPN-- 105

Query: 115 YWRGGAGDSNSSTGVPLSQKQNSMAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKD 174
                             +K+NS+AAMRE IFRVA MQP+HIDP+S+KPPKRRNVKISKD
Sbjct: 106 -----------------PEKKNSVAAMREMIFRVAVMQPVHIDPESIKPPKRRNVKISKD 148

Query: 175 PQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANR 234
           PQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLK QVQ+LE+A A R
Sbjct: 149 PQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGATR 208

Query: 235 PAG-IGFPATLTTGN 248
           P   +GFP T++  N
Sbjct: 209 PLNVVGFPTTVSNAN 223

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	272
UNIPROTKB|Q67TR8	236	B1342C04.6 "Basic helix-loop-h	0.466	0.538	0.566	2e-31
TAIR|locus:2155543	241	HEC1 "HECATE 1" [Arabidopsis t	0.474	0.535	0.583	3.3e-31
TAIR|locus:2074865	231	HEC2 "AT3G50330" [Arabidopsis	0.375	0.441	0.676	3e-30
UNIPROTKB|Q6Z9R3	246	P0461F06.33 "BHLH protein fami	0.430	0.475	0.603	6.2e-30
TAIR|locus:2144791	224	HEC3 "AT5G09750" [Arabidopsis	0.360	0.437	0.540	5.5e-22
TAIR|locus:2089418	373	AT3G21330 "AT3G21330" [Arabido	0.444	0.324	0.432	8.7e-20
UNIPROTKB|Q657D1	484	P0697C12.40 "BHLH transcriptio	0.533	0.299	0.376	1.9e-19
TAIR|locus:2126856	198	IND "AT4G00120" [Arabidopsis t	0.334	0.459	0.527	5.1e-19
UNIPROTKB|Q8S0N2	393	P0692C11.41-1 "BHLH transcript	0.338	0.234	0.505	9.8e-19
UNIPROTKB|Q69TX2	211	P0021C04.13 "BHLH protein-like	0.360	0.464	0.438	4.2e-15

UNIPROTKB|Q67TR8 B1342C04.6 "Basic helix-loop-helix (BHLH)-like protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 77/136 (56%), Positives = 91/136 (66%)

Query:   125 SSTGVPL-SQKQNSMAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDPQSVAAXXX 183
             S +G P  S   +S  AMRE IF +AA+QP+ IDP++V+PPKRRNV+ISKDPQSVAA   
Sbjct:   100 SDSGAPQGSSSSSSSEAMREMIFHIAALQPVEIDPEAVRPPKRRNVRISKDPQSVAARLR 159

Query:   184 XXXXXXXXXXXXXXVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAA------NRPAG 237
                           VPGGTKMDTASMLDEAIHYVKFLK+QVQSLERAAA      +R A 
Sbjct:   160 RERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKSQVQSLERAAAATGAAAHRAAA 219

Query:   238 IG--FPATLTTGNYPP 251
              G  +PA L   ++ P
Sbjct:   220 FGAAYPAALPMQHHAP 235

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2155543 HEC1 "HECATE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 77/132 (58%), Positives = 84/132 (63%)

Query:   108 SYSPNERYWRGGAGDSNSSTGVPLSQKQNSMAAMRETIFRVAAMQPIHIDPDSVKPPKRR 167
             S SPN  Y        N+S     +    +MAAMRE IFR+A MQPIHIDP++VKPPKRR
Sbjct:    68 SISPNTAYSSVFLDKRNNSNN---NNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKRR 124

Query:   168 NVKISKDPQSVAAXXXXXXXXXXXXXXXXXVPGGTKMDTASMLDEAIHYVKFLKTQVQSL 227
             NV+ISKDPQSVAA                 VPGGTKMDTASMLDEAIHYVKFLK QVQSL
Sbjct:   125 NVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSL 184

Query:   228 ERAAANRPAGIG 239
             E  A     G G
Sbjct:   185 EEQAVVTGGGGG 196

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010500 "transmitting tissue development" evidence=IGI

GO:0048462 "carpel formation" evidence=IMP

GO:0048445 "carpel morphogenesis" evidence=RCA

TAIR|locus:2074865 HEC2 "AT3G50330" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 69/102 (67%), Positives = 75/102 (73%)

Query:   137 SMAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDPQSVAAXXXXXXXXXXXXXXXX 196
             +MAAMRE IFR+A MQPIHIDP+SVKPPKR+NV+ISKDPQSVAA                
Sbjct:    91 NMAAMREMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQSVAARHRRERISERIRILQR 150

Query:   197 XVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPAGI 238
              VPGGTKMDTASMLDEAIHYVKFLK QVQSLE  A     G+
Sbjct:   151 LVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEEHAVVNGGGM 192

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010500 "transmitting tissue development" evidence=IGI

GO:0048462 "carpel formation" evidence=IMP

GO:0080126 "ovary septum development" evidence=IGI

UNIPROTKB|Q6Z9R3 P0461F06.33 "BHLH protein family-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 73/121 (60%), Positives = 84/121 (69%)

Query:   139 AAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDPQSVAAXXXXXXXXXXXXXXXXXV 198
             AAMRE IF +AA+QP++IDP++V+PPKRRNV+IS DPQSVAA                 V
Sbjct:   125 AAMREMIFHIAALQPVNIDPETVRPPKRRNVRISTDPQSVAARMRRERISERIRILQRLV 184

Query:   199 PGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAA---NRPAG-IGFPATLTTGNYPPIIG 254
             PGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAA   +RP       A   T  YP + G
Sbjct:   185 PGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAAANGHRPPPPTATSAAAATVAYPGLNG 244

Query:   255 K 255
             +
Sbjct:   245 Q 245

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2144791 HEC3 "AT5G09750" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 53/98 (54%), Positives = 64/98 (65%)

Query:   138 MAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDPQSVAAXXXXXXXXXXXXXXXXX 197
             + AM+E ++++AAMQ + IDP +VK PKRRNV+IS DPQSVAA                 
Sbjct:    92 LGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQRL 151

Query:   198 VPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRP 235
             VPGGTKMDTASMLDEAI YVKFLK Q++ L       P
Sbjct:   152 VPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNNTGYTP 189

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010500 "transmitting tissue development" evidence=IGI

GO:0048462 "carpel formation" evidence=IMP

TAIR|locus:2089418 AT3G21330 "AT3G21330" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 8.7e-20, P = 8.7e-20
 Identities = 54/125 (43%), Positives = 73/125 (58%)

Query:   108 SYSPNERYWRGGAGDSNSSTGVPLSQK----QNSMAAMRETIFRVAAMQPIHIDPDSVKP 163
             S  P     RGG+ + +      LS        ++A M+E I+R AA +P++   + V+ 
Sbjct:   208 SKKPRTEKERGGSSNISFQHSTCLSDNVEPDAEAIAQMKEMIYRAAAFRPVNFGLEIVEK 267

Query:   164 PKRRNVKISKDPQSVAAXXXXXXXXXXXXXXXXXVPGGTKMDTASMLDEAIHYVKFLKTQ 223
             PKR+NVKIS DPQ+VAA                 VPGGTKMDTASMLDEA +Y+KFL+ Q
Sbjct:   268 PKRKNVKISTDPQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQ 327

Query:   224 VQSLE 228
             V++LE
Sbjct:   328 VKALE 332

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q657D1 P0697C12.40 "BHLH transcription-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 223 (83.6 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
 Identities = 58/154 (37%), Positives = 82/154 (53%)

Query:   117 RGGAGDSNSSTGV-PLSQKQN-SMAAMRETIFRVAAMQPIHIDP-DSVKPPKRRNVKISK 173
             RG  G+     G  PL +    ++A ++E I+R AAM+P+ +   D+ + P+RRNV+IS 
Sbjct:   313 RGPGGNCGGGGGDDPLYEPDTEALAQVKEMIYRAAAMRPVTLGAEDAGERPRRRNVRISS 372

Query:   174 DPQSVAAXXXXXXXXXXXXXXXXXVPGGTKMDTASMLDEAIHYVKFLKTQVQSLE----R 229
             DPQ+VAA                 VPGG KMDTASMLDEA +Y++FLK+Q++ L+    R
Sbjct:   373 DPQTVAARQRRERISERLRVLQKLVPGGAKMDTASMLDEAANYLRFLKSQIRELQTLDRR 432

Query:   230 AAANRPAGIGFPA--TLTTGNYPPIIGKEYQQPA 261
                N    I   A  T+ T + P         PA
Sbjct:   433 NYPNAAMSINTAAATTMATSSSPTYNNSNAAMPA 466

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2126856 IND "AT4G00120" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 48/91 (52%), Positives = 57/91 (62%)

Query:   138 MAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDPQSVAAXXXXXXXXXXXXXXXXX 197
             M AM+E  + +A MQP+ IDP +V  P RRNV+IS DPQ+V A                 
Sbjct:    85 MDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERISEKIRILKRI 144

Query:   198 VPGGTKMDTASMLDEAIHYVKFLKTQVQSLE 228
             VPGG KMDTASMLDEAI Y KFLK QV+ L+
Sbjct:   145 VPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010197 "polar nucleus fusion" evidence=IMP

UNIPROTKB|Q8S0N2 P0692C11.41-1 "BHLH transcription factor-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 229 (85.7 bits), Expect = 9.8e-19, P = 9.8e-19
 Identities = 47/93 (50%), Positives = 62/93 (66%)

Query:   137 SMAAMRETIFRVAAMQPIHIDPDSVKP-PKRRNVKISKDPQSVAAXXXXXXXXXXXXXXX 195
             +MA ++E I+R AAM+P+H+  ++    P+R+NV+IS DPQ+VAA               
Sbjct:   246 AMAQVKEMIYRAAAMRPVHLGTEAAADKPRRKNVRISSDPQTVAARLRRERVSDRLRVLQ 305

Query:   196 XXVPGGTKMDTASMLDEAIHYVKFLKTQVQSLE 228
               VPGG KMDTASMLDEA  Y+KFLK+QVQ LE
Sbjct:   306 KLVPGGNKMDTASMLDEAASYLKFLKSQVQKLE 338

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q69TX2 P0021C04.13 "BHLH protein-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 43/98 (43%), Positives = 55/98 (56%)

Query:   135 QNSMAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDPQSVAAXXXXXXXXXXXXXX 194
             Q+S   +  T  R   +     +  +   P+RRN ++S +PQSVAA              
Sbjct:    84 QSSSRGIMYTTTRQGVIDAAEEEEAAAPRPRRRNARVSSEPQSVAARLRRERVSQRMRAL 143

Query:   195 XXXVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAAA 232
                VPGG ++DTASML+EAI YVKFLK  VQSLERAAA
Sbjct:   144 QRLVPGGARLDTASMLEEAIRYVKFLKGHVQSLERAAA 181

GO:0005634 "nucleus" evidence=IC

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FHA7	HEC1_ARATH	No assigned EC number	0.5159	0.6654	0.7510	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00400312 hypothetical protein (265 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	272
smart00353	53	smart00353, HLH, helix loop helix domain	3e-12
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	5e-11
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	6e-07

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 59.5 bits (145), Expect = 3e-12
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 177 SVAARHRRERISERIRILQRLVPG---GTKMDTASMLDEAIHYVKFLKTQVQS 226
           +   R RR +I+E    L+ L+P      K+  A +L  AI Y+K L+ ++Q 
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQK 53

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 56.8 bits (138), Expect = 5e-11
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 173 KDPQSVAARHRRERISERIRILQRLVPG---GTKMDTASMLDEAIHYVKFLKTQVQ 225
           ++  ++  R RRERI++    L+ L+P      K+  A +L +A+ Y+K L+  +Q
Sbjct: 5   REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 45.1 bits (108), Expect = 6e-07
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 181 RHRRERISERIRILQRLVP--GGTKMDTASMLDEAIHYVKFLK 221
           R RR+RI++    L+ L+P     K+  A +L  AI Y+K L+
Sbjct: 10  RRRRDRINDAFEELRELLPTPPNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	272
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	99.68
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.41
smart00353	53	HLH helix loop helix domain.	99.4
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.36
KOG1318	411	consensus Helix loop helix transcription factor EB	99.11
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.69
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	98.37
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	98.22
KOG0561	373	consensus bHLH transcription factor [Transcription	98.05
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	98.02
PLN03217	93	transcription factor ATBS1; Provisional	97.69
KOG3960	284	consensus Myogenic helix-loop-helix transcription	97.58
KOG4029	228	consensus Transcription factor HAND2/Transcription	97.34
KOG3910	632	consensus Helix loop helix transcription factor [T	95.91
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	94.29
KOG3558	768	consensus Hypoxia-inducible factor 1/Neuronal PAS	92.16
KOG3560	712	consensus Aryl-hydrocarbon receptor [Transcription	86.85
KOG3559	598	consensus Transcriptional regulator SIM1 [Transcri	86.42
KOG3582	856	consensus Mlx interactors and related transcriptio	82.11

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=99.68  E-value=6.2e-18  Score=149.66  Aligned_cols=131  Identities=21%  Similarity=0.261  Sum_probs=103.7

Q ss_pred             cccCCCCCCCCCCCCCCccchhHHHHHHHHHHHhhhhcCCCCCCCCCCCCCCCCccCCCCcccHHHHHHHHHHHHHHHHH
Q 024139          115 YWRGGAGDSNSSTGVPLSQKQNSMAAMRETIFRVAAMQPIHIDPDSVKPPKRRNVKISKDPQSVAARHRRERISERIRIL  194 (272)
Q Consensus       115 ~~~~~gs~s~~~~s~~s~e~k~s~aalKk~l~~vp~m~~~~~d~~S~k~~krr~~~~s~~~Hs~~ER~RRerIne~i~~L  194 (272)
                      ++-+.|+.+++++.++++++.....+-+|..++                .+||      ..|..+||+||+.|+..+..|
T Consensus        27 r~Ss~GStsssSApNtdd~ds~~hS~a~k~syk----------------~rrr------~aHtqaEqkRRdAIk~GYddL   84 (229)
T KOG1319|consen   27 RASSIGSTSASSAPNTDDEDSDYHSEAYKESYK----------------DRRR------RAHTQAEQKRRDAIKRGYDDL   84 (229)
T ss_pred             hcCCCCCCCCCCCCCCCcccccchhHHHHhhHH----------------HHHH------HHHHHHHHHHHHHHHhchHHH
Confidence            345567777777777777766554444443332                2222      459999999999999999999


Q ss_pred             hccCCC-------CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCcccccCCCCCCccccccCCCCCCCCCCC
Q 024139          195 QRLVPG-------GTKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPAGIGFPATLTTGNYPPIIGKEYQQPAVRNGAL  267 (272)
Q Consensus       195 rsLVP~-------~~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~~~~~~~~~~~~~~~~y~~~~~~~~q~~~~~~~~~  267 (272)
                      +.|||.       |.|+.||.||.++||||.+|+.++.+.|++...+.++|...-++ +.+||+ |++++|..|..|+.|
T Consensus        85 q~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~iI-k~~YEq-M~~~~qdnp~~~e~~  162 (229)
T KOG1319|consen   85 QTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKII-KVNYEQ-MVKAHQDNPHEGEDQ  162 (229)
T ss_pred             HHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHhcccCCCcchhh
Confidence            999994       35788999999999999999999999999999999996554444 459999 999999999998887


Q ss_pred             CC
Q 024139          268 HY  269 (272)
Q Consensus       268 ~~  269 (272)
                      .-
T Consensus       163 ~~  164 (229)
T KOG1319|consen  163 VS  164 (229)
T ss_pred             hh
Confidence            53

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.41  E-value=3.5e-13  Score=96.01  Aligned_cols=52  Identities=33%  Similarity=0.576  Sum_probs=48.9

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 024139          174 DPQSVAARHRRERISERIRILQRLVPGG---TKMDTASMLDEAIHYVKFLKTQVQ  225 (272)
Q Consensus       174 ~~Hs~~ER~RRerIne~i~~LrsLVP~~---~K~DKasIL~eAIdYIk~Lq~qV~  225 (272)
                      ..|+..||+||++||+.|..|+.+||..   .|+||++||+.||+||++|+.+++
T Consensus         6 ~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           6 EAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            4599999999999999999999999988   899999999999999999998863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.40  E-value=6e-13  Score=93.27  Aligned_cols=49  Identities=35%  Similarity=0.586  Sum_probs=45.7

Q ss_pred             cHHHHHHHHHHHHHHHHHhccCC---CCCCCChhhHHHHHHHHHHHHHHHHH
Q 024139          177 SVAARHRRERISERIRILQRLVP---GGTKMDTASMLDEAIHYVKFLKTQVQ  225 (272)
Q Consensus       177 s~~ER~RRerIne~i~~LrsLVP---~~~K~DKasIL~eAIdYIk~Lq~qV~  225 (272)
                      +..||+||++||++|..|+.+||   .+.|+||++||+.||+||++|+.+++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            46799999999999999999999   46799999999999999999999986

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.36  E-value=9.3e-13  Score=93.70  Aligned_cols=47  Identities=36%  Similarity=0.608  Sum_probs=44.8

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhhHHHHHHHHHHHHH
Q 024139          175 PQSVAARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFLK  221 (272)
Q Consensus       175 ~Hs~~ER~RRerIne~i~~LrsLVP~~-----~K~DKasIL~eAIdYIk~Lq  221 (272)
                      .|+..||+||++||+.|..|+.+||.+     .|+||++||+.||+||++||
T Consensus         4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            599999999999999999999999976     78999999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=99.11  E-value=6.7e-11  Score=115.32  Aligned_cols=54  Identities=30%  Similarity=0.559  Sum_probs=48.2

Q ss_pred             CCCcccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHHHH
Q 024139          172 SKDPQSVAARHRRERISERIRILQRLVPGG----TKMDTASMLDEAIHYVKFLKTQVQ  225 (272)
Q Consensus       172 s~~~Hs~~ER~RRerIne~i~~LrsLVP~~----~K~DKasIL~eAIdYIk~Lq~qV~  225 (272)
                      +++.|+.+|||||++||++|++|..|||.|    .|..|..||..++|||+.||+..+
T Consensus       233 Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q  290 (411)
T KOG1318|consen  233 KRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ  290 (411)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence            447899999999999999999999999988    455699999999999999987444

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.69  E-value=1.1e-08  Score=94.43  Aligned_cols=53  Identities=23%  Similarity=0.456  Sum_probs=46.8

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCCC--------CCCChhhHHHHHHHHHHHHHHHHHHH
Q 024139          175 PQSVAARHRRERISERIRILQRLVPGG--------TKMDTASMLDEAIHYVKFLKTQVQSL  227 (272)
Q Consensus       175 ~Hs~~ER~RRerIne~i~~LrsLVP~~--------~K~DKasIL~eAIdYIk~Lq~qV~~L  227 (272)
                      .+-+.|||||+|||+.|.+|+.||+.+        .|++||.||+-||+|++.|+.....-
T Consensus        35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~   95 (250)
T KOG4304|consen   35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAA   95 (250)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccccc
Confidence            478999999999999999999999932        67889999999999999999865443

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=98.37  E-value=4.2e-07  Score=95.20  Aligned_cols=51  Identities=25%  Similarity=0.474  Sum_probs=47.6

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHH
Q 024139          173 KDPQSVAARHRRERISERIRILQRLVPGG----TKMDTASMLDEAIHYVKFLKTQ  223 (272)
Q Consensus       173 ~~~Hs~~ER~RRerIne~i~~LrsLVP~~----~K~DKasIL~eAIdYIk~Lq~q  223 (272)
                      ++.|+.+|||||+++|.-|.+|.+|||.+    .|+||.+||.+||++||.+++.
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            36799999999999999999999999976    6999999999999999998875

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=98.22  E-value=4e-06  Score=76.92  Aligned_cols=62  Identities=19%  Similarity=0.300  Sum_probs=50.7

Q ss_pred             CCCcccHHHHHHHHHHHHHHHHHhccCCCC--CCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024139          172 SKDPQSVAARHRRERISERIRILQRLVPGG--TKMD-TASMLDEAIHYVKFLKTQVQSLERAAAN  233 (272)
Q Consensus       172 s~~~Hs~~ER~RRerIne~i~~LrsLVP~~--~K~D-KasIL~eAIdYIk~Lq~qV~~LE~~~~~  233 (272)
                      ++..|+..||+||+.|+++|..|+.+||.+  .+.. .++||++|++||+.|+.+..+.+...+.
T Consensus        59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~  123 (232)
T KOG2483|consen   59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIED  123 (232)
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence            446699999999999999999999999966  3333 6999999999999999876655554433

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=98.05  E-value=2.2e-06  Score=81.34  Aligned_cols=55  Identities=24%  Similarity=0.466  Sum_probs=47.8

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHhccCC--CCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 024139          173 KDPQSVAARHRRERISERIRILQRLVP--GGTKMDTASMLDEAIHYVKFLKTQVQSL  227 (272)
Q Consensus       173 ~~~Hs~~ER~RRerIne~i~~LrsLVP--~~~K~DKasIL~eAIdYIk~Lq~qV~~L  227 (272)
                      ++.-+..||||=.-||-.|..||+|+|  .|.|++||.||+.+.+||.+|+.+.-+|
T Consensus        61 ReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l  117 (373)
T KOG0561|consen   61 REIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL  117 (373)
T ss_pred             HHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence            345677899999999999999999999  4699999999999999999998754433

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=98.02  E-value=2.4e-06  Score=90.32  Aligned_cols=64  Identities=27%  Similarity=0.453  Sum_probs=59.1

Q ss_pred             CCCcccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024139          172 SKDPQSVAARHRRERISERIRILQRLVPGG-TKMDTASMLDEAIHYVKFLKTQVQSLERAAANRP  235 (272)
Q Consensus       172 s~~~Hs~~ER~RRerIne~i~~LrsLVP~~-~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~~~  235 (272)
                      ++..|+++|||-|-.||++|.+|+.+||+. .|+.|..+|..||+||++|+...+.+..+++...
T Consensus       276 kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~  340 (953)
T KOG2588|consen  276 KRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR  340 (953)
T ss_pred             ccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence            367899999999999999999999999987 8999999999999999999999999988877655

>PLN03217 transcription factor ATBS1; Provisional

Probab=97.69  E-value=0.00011  Score=58.55  Aligned_cols=50  Identities=26%  Similarity=0.500  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHhccCCC------CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024139          184 RERISERIRILQRLVPG------GTKMDTASMLDEAIHYVKFLKTQVQSLERAAAN  233 (272)
Q Consensus       184 RerIne~i~~LrsLVP~------~~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~  233 (272)
                      -+.|++-+..|+.|+|.      ..|..-+-||+||+.||+.|+.+|..|.+....
T Consensus        19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~   74 (93)
T PLN03217         19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSE   74 (93)
T ss_pred             HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999993      356677889999999999999999999887654

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=97.58  E-value=0.00013  Score=67.91  Aligned_cols=75  Identities=20%  Similarity=0.370  Sum_probs=57.0

Q ss_pred             CCCCCCCCCCCccCCC-CcccHHHHHHHHHHHHHHHHHhc-cCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024139          158 PDSVKPPKRRNVKISK-DPQSVAARHRRERISERIRILQR-LVPGG-TKMDTASMLDEAIHYVKFLKTQVQSLERAAA  232 (272)
Q Consensus       158 ~~S~k~~krr~~~~s~-~~Hs~~ER~RRerIne~i~~Lrs-LVP~~-~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~  232 (272)
                      .++.+..||+....-+ ..-.+.||||=.|+||.|.+|++ -+++- ..+-|+.||..||+||..||.-++++..+..
T Consensus       103 ~wackackrks~svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~  180 (284)
T KOG3960|consen  103 LWACKACKRKSTSVDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK  180 (284)
T ss_pred             HHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            4556666655543322 22467899999999999999987 44544 6788999999999999999998888876543

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=97.34  E-value=0.00021  Score=64.51  Aligned_cols=57  Identities=19%  Similarity=0.381  Sum_probs=50.2

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024139          175 PQSVAARHRRERISERIRILQRLVPG----GTKMDTASMLDEAIHYVKFLKTQVQSLERAA  231 (272)
Q Consensus       175 ~Hs~~ER~RRerIne~i~~LrsLVP~----~~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~  231 (272)
                      .++..||.|=+.+|..|..||.+||.    ..|+.|..+|..||.||++|+.-++.-+...
T Consensus       112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~  172 (228)
T KOG4029|consen  112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL  172 (228)
T ss_pred             hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence            35777999999999999999999993    5789999999999999999999888776543

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=95.91  E-value=0.0041  Score=62.84  Aligned_cols=52  Identities=21%  Similarity=0.256  Sum_probs=43.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHH
Q 024139          176 QSVAARHRRERISERIRILQRLVPGG----TKMDTASMLDEAIHYVKFLKTQVQSL  227 (272)
Q Consensus       176 Hs~~ER~RRerIne~i~~LrsLVP~~----~K~DKasIL~eAIdYIk~Lq~qV~~L  227 (272)
                      .++.||.|-..||+.|++|.++.---    ....|.-||..||.-|-.|++||++-
T Consensus       530 NNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER  585 (632)
T KOG3910|consen  530 NNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER  585 (632)
T ss_pred             hhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence            46778888788999999999987632    33459999999999999999999874

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=94.29  E-value=0.075  Score=46.71  Aligned_cols=85  Identities=16%  Similarity=0.298  Sum_probs=59.2

Q ss_pred             ccHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCcCcccccCCCCCCc
Q 024139          176 QSVAARHRRERISERIRILQRLVPGG--TKMDTASMLDEAIHYVKFLKTQVQSLERAAANRP--AGIGFPATLTTGNYPP  251 (272)
Q Consensus       176 Hs~~ER~RRerIne~i~~LrsLVP~~--~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~~~--~~~~~~~~~~~~~y~~  251 (272)
                      |++-||+|-..+|+.|..||.++|..  .|++|.--|.-|-.||.+|=+-.   ..+.+-.+  .--.+|..    -.|.
T Consensus        82 anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl---~s~l~~~~~~~sc~yPk~----~~e~  154 (173)
T KOG4447|consen   82 ANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL---QSDLELDPKMQSCSYPKV----AHER  154 (173)
T ss_pred             HHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhcc---ccccccccccCCCCCCcc----chhh
Confidence            69999999999999999999999954  89999999999999999996543   33322112  22344433    2333


Q ss_pred             cccccCCCCCCCCCCCC
Q 024139          252 IIGKEYQQPAVRNGALH  268 (272)
Q Consensus       252 ~~~~~~q~~~~~~~~~~  268 (272)
                       +--++-..++.|.+||
T Consensus       155 -Lsy~fsvwrmeg~~q~  170 (173)
T KOG4447|consen  155 -LSYAFSVWRMEGAWQM  170 (173)
T ss_pred             -hccccccccCCCchhc
Confidence             3334445566666665

>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]

Probab=92.16  E-value=0.081  Score=55.55  Aligned_cols=46  Identities=30%  Similarity=0.512  Sum_probs=39.8

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHHH
Q 024139          174 DPQSVAARHRRERISERIRILQRLVPG----GTKMDTASMLDEAIHYVKF  219 (272)
Q Consensus       174 ~~Hs~~ER~RRerIne~i~~LrsLVP~----~~K~DKasIL~eAIdYIk~  219 (272)
                      ++..-+.|.||.|-|+-|.+|..+||-    ...+|||+|+.-||-|+|-
T Consensus        48 EkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl   97 (768)
T KOG3558|consen   48 EKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL   97 (768)
T ss_pred             hhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence            445667999999999999999999992    2679999999999999973

>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]

Probab=86.85  E-value=0.6  Score=48.29  Aligned_cols=39  Identities=26%  Similarity=0.521  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHhccCCC----CCCCChhhHHHHHHHHHH
Q 024139          180 ARHRRERISERIRILQRLVPG----GTKMDTASMLDEAIHYVK  218 (272)
Q Consensus       180 ER~RRerIne~i~~LrsLVP~----~~K~DKasIL~eAIdYIk  218 (272)
                      -||-|||+|..++.|.+|+|-    ..|+||.+||.-+|-|++
T Consensus        33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr   75 (712)
T KOG3560|consen   33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR   75 (712)
T ss_pred             chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence            456689999999999999994    389999999999999986

>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]

Probab=86.42  E-value=0.79  Score=46.14  Aligned_cols=43  Identities=33%  Similarity=0.488  Sum_probs=37.7

Q ss_pred             cHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHH
Q 024139          177 SVAARHRRERISERIRILQRLVPGG----TKMDTASMLDEAIHYVKF  219 (272)
Q Consensus       177 s~~ER~RRerIne~i~~LrsLVP~~----~K~DKasIL~eAIdYIk~  219 (272)
                      .-+.|.||++-|-.|.+|..++|-.    ..+||++|+.-|.-|||.
T Consensus         6 KnaA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm   52 (598)
T KOG3559|consen    6 KNAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM   52 (598)
T ss_pred             hhHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence            3468999999999999999999932    559999999999999985

>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]

Probab=82.11  E-value=0.19  Score=53.03  Aligned_cols=69  Identities=17%  Similarity=0.264  Sum_probs=57.4

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCcccc
Q 024139          175 PQSVAARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFLKTQVQSLERAAANRPAGIGFPAT  243 (272)
Q Consensus       175 ~Hs~~ER~RRerIne~i~~LrsLVP~~-----~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~~~~~~~~~~~  243 (272)
                      .|+.+|.+||..|+-++..|-+++-+.     .|+.++.-+..+++||..++.+...+.++.-..++++..+..
T Consensus       654 t~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~~~s~~~A  727 (856)
T KOG3582|consen  654 THISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRKEISELNA  727 (856)
T ss_pred             cCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhhhhhHHHHH
Confidence            589999999999999999999999864     556677789999999999998888887777777766555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	272
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	2e-12
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	4e-08
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	8e-08
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	4e-07
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	4e-07
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	6e-04
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	8e-04

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 60.5 bits (147), Expect = 2e-12
 Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 165 KRRNVKISKDPQSVAARHRRERISERIRILQRLVPG-GTKMDTASMLDEAIHYVKFLKTQ 223
           + R  K  +   +   +  R  I+++I  L+ LV G   K++ +++L +AI Y++FL+  
Sbjct: 1   QSRGEK--RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHS 58

Query: 224 VQSLER 229
            Q L++
Sbjct: 59  NQKLKQ 64

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 48.9 bits (117), Expect = 4e-08
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 181 RHRRERISERIRILQRLVPG---GTKMDTASMLDEAIHYVKFLKTQVQSLER 229
           R RR  +      L+  +P      K     +L +A  Y+  ++ + Q L  
Sbjct: 15  RQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS 66

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 47.8 bits (114), Expect = 8e-08
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 181 RHRRERISERIRILQRLVPG--GTKMDTASMLDEAIHYVKFLKTQVQSLER 229
           R RR+ I +    L+  VP   G K   A +LD+A  Y+++++ +  + ++
Sbjct: 11  RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 45.4 bits (108), Expect = 4e-07
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 181 RHRRERISERIRILQRLVPG------GTKMDTASMLDEAIHYVKFLKTQVQ 225
           R RR++I+  I  L +++P        +      +L +A  Y++ L+    
Sbjct: 14  RRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 181 RHRRERISERIRILQRLVPG--GTKMDTASMLDEAIHYVKFLKTQVQSLER 229
           R RR+ I +    L+  VP   G K   A +LD+A  Y+++++ +  + ++
Sbjct: 21  RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 181 RHRRERISERIRILQRLVPGG---TKMDTASMLDEAIHYVKFLKTQVQSLER 229
           ++RR  +   +  L+ LVP G   ++  T S+L +A  ++K L+   +    
Sbjct: 10  KNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 165 KRRNVKISKDPQSVAARHRRERISERIRILQRLVPG----GTKMDTASMLDEAIHYVKFL 220
            +  +K +++  S   + RR++++  I  L  LVP       K+D  ++L  A+ ++K L
Sbjct: 6   HQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTL 65

Query: 221 KTQVQSLERA 230
           +        A
Sbjct: 66  RGATNPYTEA 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	272
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.65
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.6
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.55
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.55
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.53
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.52
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.51
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.48
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.47
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.41
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.37
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.08
4f3l_A	361	Mclock, circadian locomoter output cycles protein	99.0
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	99.0
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.88
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.79
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.59
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	98.11

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.65  E-value=2.2e-16  Score=121.30  Aligned_cols=61  Identities=26%  Similarity=0.483  Sum_probs=57.5

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024139          174 DPQSVAARHRRERISERIRILQRLVPGG-TKMDTASMLDEAIHYVKFLKTQVQSLERAAANR  234 (272)
Q Consensus       174 ~~Hs~~ER~RRerIne~i~~LrsLVP~~-~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~~  234 (272)
                      ..|+.+||+||++||++|..|++|||++ .|+||++||++||+||++|+.+++.|+++++..
T Consensus         8 ~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L   69 (82)
T 1am9_A            8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL   69 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999987 899999999999999999999999999987653

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.60  E-value=1.3e-15  Score=124.34  Aligned_cols=61  Identities=25%  Similarity=0.487  Sum_probs=53.1

Q ss_pred             CCCcccHHHHHHHHHHHHHHHHHhccCCCCC----CCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024139          172 SKDPQSVAARHRRERISERIRILQRLVPGGT----KMDTASMLDEAIHYVKFLKTQVQSLERAAA  232 (272)
Q Consensus       172 s~~~Hs~~ER~RRerIne~i~~LrsLVP~~~----K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~  232 (272)
                      .+..|+.+||+||++||++|..|+.|||++.    |++|++||++||+||++||.+++.|++...
T Consensus        27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~   91 (118)
T 4ati_A           27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN   91 (118)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4467999999999999999999999999873    678999999999999999999999998644

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.55  E-value=4.3e-15  Score=112.17  Aligned_cols=55  Identities=25%  Similarity=0.471  Sum_probs=51.2

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 024139          174 DPQSVAARHRRERISERIRILQRLVPGG-TKMDTASMLDEAIHYVKFLKTQVQSLE  228 (272)
Q Consensus       174 ~~Hs~~ER~RRerIne~i~~LrsLVP~~-~K~DKasIL~eAIdYIk~Lq~qV~~LE  228 (272)
                      ..|+.+||+||++||++|.+|++|||++ .|+||++||+.||+||++||.++.=||
T Consensus        10 ~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~   65 (71)
T 4h10_B           10 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE   65 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence            5699999999999999999999999975 699999999999999999999987664

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.55  E-value=6.7e-16  Score=113.67  Aligned_cols=53  Identities=21%  Similarity=0.429  Sum_probs=48.1

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHhccCCCC-------CCCChhhHHHHHHHHHHHHHHHHH
Q 024139          173 KDPQSVAARHRRERISERIRILQRLVPGG-------TKMDTASMLDEAIHYVKFLKTQVQ  225 (272)
Q Consensus       173 ~~~Hs~~ER~RRerIne~i~~LrsLVP~~-------~K~DKasIL~eAIdYIk~Lq~qV~  225 (272)
                      +..|..+||+||++||.+|..|+.|||++       .|.+||+||+.||+||++||++|+
T Consensus         3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            36799999999999999999999999954       577899999999999999998764

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.53  E-value=2.5e-15  Score=110.15  Aligned_cols=53  Identities=21%  Similarity=0.456  Sum_probs=48.7

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHhccCCCCC------CCChhhHHHHHHHHHHHHHHHHH
Q 024139          173 KDPQSVAARHRRERISERIRILQRLVPGGT------KMDTASMLDEAIHYVKFLKTQVQ  225 (272)
Q Consensus       173 ~~~Hs~~ER~RRerIne~i~~LrsLVP~~~------K~DKasIL~eAIdYIk~Lq~qV~  225 (272)
                      +..|+.+||+||++||++|..|+.|||.+.      |+||++||++||+||++||++++
T Consensus         6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~   64 (65)
T 1an4_A            6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH   64 (65)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred             HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            357999999999999999999999999874      78999999999999999998754

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.52  E-value=1.7e-14  Score=109.83  Aligned_cols=60  Identities=22%  Similarity=0.450  Sum_probs=56.5

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024139          174 DPQSVAARHRRERISERIRILQRLVPGG--TKMDTASMLDEAIHYVKFLKTQVQSLERAAAN  233 (272)
Q Consensus       174 ~~Hs~~ER~RRerIne~i~~LrsLVP~~--~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~  233 (272)
                      ..|+..||+||..||++|..|+.+||.+  .|++|++||..||+||+.|+.++++|+.+.+.
T Consensus        14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~   75 (80)
T 1hlo_A           14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD   75 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999975  79999999999999999999999999998764

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.51  E-value=2.8e-14  Score=109.11  Aligned_cols=61  Identities=23%  Similarity=0.491  Sum_probs=56.0

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024139          174 DPQSVAARHRRERISERIRILQRLVPG--GTKMDTASMLDEAIHYVKFLKTQVQSLERAAANR  234 (272)
Q Consensus       174 ~~Hs~~ER~RRerIne~i~~LrsLVP~--~~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~~  234 (272)
                      ..|+..||+||++||++|..|+++||.  +.|++|++||..||+||++|+.+++.|+.+.+..
T Consensus         4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L   66 (83)
T 1nkp_B            4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL   66 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            359999999999999999999999997  4899999999999999999999999998876653

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.48  E-value=4e-15  Score=112.69  Aligned_cols=49  Identities=29%  Similarity=0.450  Sum_probs=46.1

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHH
Q 024139          174 DPQSVAARHRRERISERIRILQRLVPGG----TKMDTASMLDEAIHYVKFLKT  222 (272)
Q Consensus       174 ~~Hs~~ER~RRerIne~i~~LrsLVP~~----~K~DKasIL~eAIdYIk~Lq~  222 (272)
                      ..|+.+||+||++||++|.+|+.|||.+    .|+|||+||+.||+||+.|+.
T Consensus        11 ~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A           11 EAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence            5699999999999999999999999965    799999999999999999974

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.47  E-value=5.8e-14  Score=109.31  Aligned_cols=59  Identities=20%  Similarity=0.303  Sum_probs=54.0

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024139          174 DPQSVAARHRRERISERIRILQRLVPGG---TKMDTASMLDEAIHYVKFLKTQVQSLERAAA  232 (272)
Q Consensus       174 ~~Hs~~ER~RRerIne~i~~LrsLVP~~---~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~  232 (272)
                      ..|+..||+||+.||++|..|+.+||..   .|++|++||.+||+||++|+.+++.|+.+.+
T Consensus         8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~   69 (88)
T 1nkp_A            8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEED   69 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3599999999999999999999999964   6999999999999999999999998877654

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.41  E-value=1.2e-13  Score=105.31  Aligned_cols=56  Identities=25%  Similarity=0.310  Sum_probs=49.4

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCC---CCCC-ChhhHHHHHHHHHHHHHHHHHHHHH
Q 024139          174 DPQSVAARHRRERISERIRILQRLVPG---GTKM-DTASMLDEAIHYVKFLKTQVQSLER  229 (272)
Q Consensus       174 ~~Hs~~ER~RRerIne~i~~LrsLVP~---~~K~-DKasIL~eAIdYIk~Lq~qV~~LE~  229 (272)
                      ..|+..||+||+.||++|..|+.+||.   +.|. .|+.||..||+||++|+++|++++.
T Consensus         7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~   66 (76)
T 3u5v_A            7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL   66 (76)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            469999999999999999999999994   4555 7999999999999999999998753

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.37  E-value=1.2e-12  Score=100.34  Aligned_cols=60  Identities=22%  Similarity=0.270  Sum_probs=55.2

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024139          175 PQSVAARHRRERISERIRILQRLVPGG---TKMDTASMLDEAIHYVKFLKTQVQSLERAAANR  234 (272)
Q Consensus       175 ~Hs~~ER~RRerIne~i~~LrsLVP~~---~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~~  234 (272)
                      .|+..||+||..||++|..|+++||.+   .|.+|+.||.+|++||+.|+.+++.|+.+.+..
T Consensus         4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L   66 (80)
T 1nlw_A            4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL   66 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999954   788999999999999999999999999886643

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.08  E-value=3.3e-11  Score=90.00  Aligned_cols=52  Identities=19%  Similarity=0.417  Sum_probs=47.6

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 024139          174 DPQSVAARHRRERISERIRILQRLVPGG--TKMDTASMLDEAIHYVKFLKTQVQ  225 (272)
Q Consensus       174 ~~Hs~~ER~RRerIne~i~~LrsLVP~~--~K~DKasIL~eAIdYIk~Lq~qV~  225 (272)
                      ..|+..||+|+..||+.|..|+.+||..  .|++|+.||..||+||.+|++.++
T Consensus        14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~   67 (68)
T 1mdy_A           14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            4589999999999999999999999964  799999999999999999998653

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.00  E-value=2.7e-10  Score=105.49  Aligned_cols=50  Identities=22%  Similarity=0.463  Sum_probs=42.5

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCC-CCCCCChhhHHHHHHHHHHHHHHH
Q 024139          174 DPQSVAARHRRERISERIRILQRLVP-GGTKMDTASMLDEAIHYVKFLKTQ  223 (272)
Q Consensus       174 ~~Hs~~ER~RRerIne~i~~LrsLVP-~~~K~DKasIL~eAIdYIk~Lq~q  223 (272)
                      ..|+.+||+||++||+.|.+|++||| ...|+||++||..||+|||.|+..
T Consensus        14 ~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~   64 (361)
T 4f3l_A           14 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET   64 (361)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence            56999999999999999999999999 458999999999999999999864

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=99.00  E-value=4.9e-10  Score=81.69  Aligned_cols=51  Identities=20%  Similarity=0.289  Sum_probs=46.8

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 024139          175 PQSVAARHRRERISERIRILQRLVPGG---TKMDTASMLDEAIHYVKFLKTQVQ  225 (272)
Q Consensus       175 ~Hs~~ER~RRerIne~i~~LrsLVP~~---~K~DKasIL~eAIdYIk~Lq~qV~  225 (272)
                      .|+..||+|+..||+.|..|+.+||..   .|++|+.+|..||+||+.|++.++
T Consensus         5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            378999999999999999999999954   789999999999999999998764

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.88  E-value=5.7e-10  Score=104.69  Aligned_cols=51  Identities=27%  Similarity=0.449  Sum_probs=47.2

Q ss_pred             CCcccHHHHHHHHHHHHHHHHHhccCC----CCCCCChhhHHHHHHHHHHHHHHH
Q 024139          173 KDPQSVAARHRRERISERIRILQRLVP----GGTKMDTASMLDEAIHYVKFLKTQ  223 (272)
Q Consensus       173 ~~~Hs~~ER~RRerIne~i~~LrsLVP----~~~K~DKasIL~eAIdYIk~Lq~q  223 (272)
                      ++.|+.+||+||++||+.|.+|+.|||    ...|+||++||..||+|||.|+..
T Consensus        14 ~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B           14 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred             cccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence            367999999999999999999999999    568999999999999999999843

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.79  E-value=8.7e-09  Score=79.86  Aligned_cols=49  Identities=22%  Similarity=0.462  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHhccCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 024139          184 RERISERIRILQRLVPGG----TKMDTASMLDEAIHYVKFLKTQVQSLERAAA  232 (272)
Q Consensus       184 RerIne~i~~LrsLVP~~----~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~  232 (272)
                      |..||++|.+|..|||.+    .|.+|++||..|||||++||..++.+.++..
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~   56 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN   56 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999964    5688999999999999999998887766544

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.59  E-value=1.2e-08  Score=76.44  Aligned_cols=44  Identities=23%  Similarity=0.366  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHH
Q 024139          179 AARHRRERISERIRILQRLVPGG---TKMDTASMLDEAIHYVKFLKT  222 (272)
Q Consensus       179 ~ER~RRerIne~i~~LrsLVP~~---~K~DKasIL~eAIdYIk~Lq~  222 (272)
                      -||+|+..||+.|..||.+||..   .|++|..+|..||+||..||.
T Consensus        21 rER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           21 EPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            38889999999999999999954   799999999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=98.11  E-value=4.7e-06  Score=66.25  Aligned_cols=48  Identities=21%  Similarity=0.304  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHhccCCC---CCCCChhhHHHHHHHHHHHHHHHHHHH
Q 024139          180 ARHRRERISERIRILQRLVPG---GTKMDTASMLDEAIHYVKFLKTQVQSL  227 (272)
Q Consensus       180 ER~RRerIne~i~~LrsLVP~---~~K~DKasIL~eAIdYIk~Lq~qV~~L  227 (272)
                      ||.|=..+|+.|..||.+||.   ..|+.|..+|..||+||..|++.++.-
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~   83 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSH   83 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcC
Confidence            567778899999999999995   478999999999999999999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	272
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	9e-16
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	5e-12
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	5e-12
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	5e-12
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	2e-11
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	2e-10
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	4e-09
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	4e-09

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (166), Expect = 9e-16
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 184 RERISERIRILQRLVPGGT-KMDTASMLDEAIHYVKFLKTQVQSLER 229
           R  I+++I  L+ LV G   KM  + +L +AI Y+K+L+     L +
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQ 47

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (140), Expect = 5e-12
 Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 171 ISKDPQSVAARHRRERISERIRILQRLVPG-------GTKMDTASMLDEAIHYVKFLKTQ 223
           + ++    A + RR R++  +  L  L+P              A+ ++ A  Y++ L+  
Sbjct: 1   MKRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQN 60

Query: 224 VQS 226
             +
Sbjct: 61  GST 63

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 5e-12
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 166 RRNVKISKDPQSVAARHRRERISERIRILQRLVP---GGTKMDTASMLDEAIHYVKFLKT 222
             NVK  +   +V  R RR  +      L+  +P      K     +L +A  Y+  ++ 
Sbjct: 2   HMNVK--RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQA 59

Query: 223 QVQSLER 229
           + Q L  
Sbjct: 60  EEQKLIS 66

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (141), Expect = 5e-12
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 181 RHRRERISERIRILQRLVPG--GTKMDTASMLDEAIHYVKFLKTQVQSLER 229
           R RR+ I +    L+  VP   G K   A +LD+A  Y+++++ +  + ++
Sbjct: 11  RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 2e-11
 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 173 KDPQSVAARHRRERISERIRILQRLVPGG-TKMDTASMLDEAIHYVKFLKTQVQSLER 229
           +   +   +  R  I+++I  L+ LV G   K++ +++L +AI Y++FL+   Q L++
Sbjct: 7   RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 2e-10
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 181 RHRRERISERIRILQRLVPGG---TKMDTASMLDEAIHYVKFLKTQVQSLER 229
           ++RR  +   +  L+ LVP G   ++  T S+L +A  ++K L+   +    
Sbjct: 10  KNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.9 bits (119), Expect = 4e-09
 Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 165 KRRNVKISK-DPQSVAARHRRERISERIRILQRLVPG--GTKMDTASMLDEAIHYVKFLK 221
           KR+     +    ++  R R  +++E    L+R        ++    +L  AI Y++ L+
Sbjct: 4   KRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQ 63

Query: 222 TQVQ 225
             ++
Sbjct: 64  ALLR 67

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (119), Expect = 4e-09
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 181 RHRRERISERIRILQRLVP------GGTKMDTASMLDEAIHYVKFLKTQVQ 225
           R RR++I+  I  L +++P        +      +L +A  Y++ L+    
Sbjct: 14  RRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	272
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.53
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.52
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.47
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.47
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.41

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.1e-15  Score=112.14  Aligned_cols=60  Identities=27%  Similarity=0.504  Sum_probs=56.2

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024139          174 DPQSVAARHRRERISERIRILQRLVPGG-TKMDTASMLDEAIHYVKFLKTQVQSLERAAAN  233 (272)
Q Consensus       174 ~~Hs~~ER~RRerIne~i~~LrsLVP~~-~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~  233 (272)
                      ..|+.+||+||++||+.|..|++|||++ .|+||++||..||+||++|+.+++.|+.+++.
T Consensus         8 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~   68 (80)
T d1am9a_           8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLS   68 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4599999999999999999999999986 69999999999999999999999999988764

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=2.1e-15  Score=108.64  Aligned_cols=51  Identities=22%  Similarity=0.434  Sum_probs=47.6

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCC-------CCCCChhhHHHHHHHHHHHHHHHH
Q 024139          174 DPQSVAARHRRERISERIRILQRLVPG-------GTKMDTASMLDEAIHYVKFLKTQV  224 (272)
Q Consensus       174 ~~Hs~~ER~RRerIne~i~~LrsLVP~-------~~K~DKasIL~eAIdYIk~Lq~qV  224 (272)
                      ..|+.+||+||++||++|..|+.|||+       +.|+||+.||+.||+||++||++|
T Consensus         4 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            569999999999999999999999994       478999999999999999999876

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.4e-15  Score=109.76  Aligned_cols=60  Identities=22%  Similarity=0.285  Sum_probs=55.2

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024139          174 DPQSVAARHRRERISERIRILQRLVPGG---TKMDTASMLDEAIHYVKFLKTQVQSLERAAAN  233 (272)
Q Consensus       174 ~~Hs~~ER~RRerIne~i~~LrsLVP~~---~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~  233 (272)
                      ..|+..||+||++||++|..|+++||++   .|.+|++||..||+||++|+.+++.|+.+.+.
T Consensus         3 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~   65 (79)
T d1nlwa_           3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQ   65 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4599999999999999999999999964   58999999999999999999999999887654

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=1.1e-14  Score=106.49  Aligned_cols=52  Identities=19%  Similarity=0.417  Sum_probs=48.4

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 024139          174 DPQSVAARHRRERISERIRILQRLVPGG--TKMDTASMLDEAIHYVKFLKTQVQ  225 (272)
Q Consensus       174 ~~Hs~~ER~RRerIne~i~~LrsLVP~~--~K~DKasIL~eAIdYIk~Lq~qV~  225 (272)
                      ..|+..||+||++||++|..|++|||++  .|+||++||+.||+||++||++|+
T Consensus        14 ~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            4699999999999999999999999975  689999999999999999998775

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.3e-14  Score=106.75  Aligned_cols=60  Identities=23%  Similarity=0.501  Sum_probs=55.5

Q ss_pred             cccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024139          175 PQSVAARHRRERISERIRILQRLVPG--GTKMDTASMLDEAIHYVKFLKTQVQSLERAAANR  234 (272)
Q Consensus       175 ~Hs~~ER~RRerIne~i~~LrsLVP~--~~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~~  234 (272)
                      .|+..||+||++||+.|..|+++||+  +.|++|++||..||+||++|+.+++.|+.+.+..
T Consensus         5 ~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l   66 (83)
T d1nkpb_           5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL   66 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999999995  4789999999999999999999999999876653

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.5e-14  Score=107.68  Aligned_cols=60  Identities=20%  Similarity=0.281  Sum_probs=55.1

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024139          174 DPQSVAARHRRERISERIRILQRLVPGG---TKMDTASMLDEAIHYVKFLKTQVQSLERAAAN  233 (272)
Q Consensus       174 ~~Hs~~ER~RRerIne~i~~LrsLVP~~---~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~  233 (272)
                      ..|+.+||+||++||+.|..|+++||++   .|++|++||..||+||++|+.+++.|+.+.+.
T Consensus         8 ~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~   70 (88)
T d1nkpa_           8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDL   70 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3599999999999999999999999964   67999999999999999999999999887664

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.1e-14  Score=102.85  Aligned_cols=50  Identities=32%  Similarity=0.521  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024139          184 RERISERIRILQRLVPGG-TKMDTASMLDEAIHYVKFLKTQVQSLERAAAN  233 (272)
Q Consensus       184 RerIne~i~~LrsLVP~~-~K~DKasIL~eAIdYIk~Lq~qV~~LE~~~~~  233 (272)
                      |++||++|..|++|||++ .|+||++||.+||+||++||.+++.|+++...
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~   51 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMV   51 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999987 69999999999999999999999999998764

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.4e-14  Score=103.57  Aligned_cols=51  Identities=22%  Similarity=0.448  Sum_probs=46.9

Q ss_pred             CcccHHHHHHHHHHHHHHHHHhccCCCC------CCCChhhHHHHHHHHHHHHHHHH
Q 024139          174 DPQSVAARHRRERISERIRILQRLVPGG------TKMDTASMLDEAIHYVKFLKTQV  224 (272)
Q Consensus       174 ~~Hs~~ER~RRerIne~i~~LrsLVP~~------~K~DKasIL~eAIdYIk~Lq~qV  224 (272)
                      ..|+.+||+||++||+.|..|++|||.+      .|++|++||..||+||++||++.
T Consensus         7 ~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           7 AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            4699999999999999999999999954      48999999999999999999764