Citrus Sinensis ID: 024190

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
MSLAVGALSSSNNMVDEKRDEGENSNVAVGAAEPANLQEEQRTSRYVTVSETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAAV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHccccccccccccccccEEEEEEEEEEcccccEEEEccccccccccEEEEccccEEEEEEEEEEccEEEEccEEEEEEEEccEEcccccccccccccccccccccccccEEEEEcccccccccccccccccEEcccccccccEEEEEEEEEEEEEEEEccccEEEEEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccEEEcEccccccccHHHccccccccccccccccccccccccHHHHHHccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHcccccccccccccccEEEEEEEEEEEcccccEEEEccccccccccEEEEEcccEEEEEEEEccccccEEEEEEEEEEEEccEEEEEEEEHHccccccccccccEccccEEEEEEEEEEEEEEEccEEEEEEEEcccEEccccHHHcEEEEEEEEEEcccccEEEEEEEEEEEEcccccc
Coil and Loop (DISEMBL)
mslavgalsssnnmvdekrdegensnvavgaaepanlqeeqrtsryvtvsetdeeddddreqdiqlgpqytlkeqiekdkdDESLRKWKEQLLGsvdfdnigetlepEVRILSLSivapgrndivlavpedgkpagnwftlkegskysLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMlgtfspqpepyihempeettpsgmfargsysartkfldddnkcyleINYSFDIRKEWAAV
Flexible Loop (DISEMBL)
mslavgalsssnnmvdekrdeGENSNVAVGaaepanlqeeqrtsryvtvsetdeeddddreqdiqlgpqytlkeqiekdkddesLRKWKEQllgsvdfdnigeTLEPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTkfldddnkcYLEINYSFDIRKEWAAV
Low Complexity Region (SEG)
MSLAVGALSSSNNMVDEKRDEGENSNVAVGAAEPANLQEEQRTSRYVTVSetdeeddddreqdIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAAV
Disordered region (IsUnstruct)
***************************************************************************************WKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAK*******************************YSARTKFLDDDNKCYLEINYSFDIRKEW***
Disordered Region (DISOPRED)
*******************************************************************************KDDESLRKWKEQLLGSVD**N**ETLEPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNV****************AKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWA**
Disordered Region (DISEMBL)
*************************NVAVGAAEPANLQ***********************QDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAAV
Disordered Region (DISPRO)
**************************************************************DIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWA**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLAVGALSSSNNMVDEKRDEGENSNVAVGAAEPANLQEEQRTSRYVTVSETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	271	2.2.26 [Sep-21-2011]
Q9SFC6	240	Rho GDP-dissociation inhi	yes	no	0.712	0.804	0.691	6e-85
Q61599	200	Rho GDP-dissociation inhi	yes	no	0.686	0.93	0.343	5e-24
Q9TU03	200	Rho GDP-dissociation inhi	yes	no	0.675	0.915	0.351	6e-24
P52566	201	Rho GDP-dissociation inhi	yes	no	0.623	0.840	0.354	2e-22
P19803	204	Rho GDP-dissociation inhi	no	no	0.675	0.897	0.325	2e-22
Q5XI73	204	Rho GDP-dissociation inhi	no	no	0.675	0.897	0.325	3e-22
Q99PT1	204	Rho GDP-dissociation inhi	no	no	0.675	0.897	0.325	3e-22
Q4R4J0	204	Rho GDP-dissociation inhi	N/A	no	0.719	0.955	0.317	3e-22
P52565	204	Rho GDP-dissociation inhi	no	no	0.719	0.955	0.317	3e-22
Q95UQ1	197	Putative rho GDP-dissocia	yes	no	0.630	0.868	0.316	5e-21

>sp|Q9SFC6|GDIR_ARATH Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1

 Score =  313 bits (803), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 155/224 (69%), Positives = 174/224 (77%), Gaps = 31/224 (13%)

Query: 48  TVSETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEP 107
           ++  T+EE+DDD +  +QLGPQYT+KE +EKDKDDESLRKWKEQLLGSVD  NIGETL+P
Sbjct: 48  SLCATEEEEDDDSK--LQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDP 105

Query: 108 EVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTN 167
           EVRI SL+I++PGR DIVL VPE+G P G WFTLKEGSKY+LKFTF V+NNIVSGL+YTN
Sbjct: 106 EVRIDSLAIISPGRPDIVLLVPENGNPKGMWFTLKEGSKYNLKFTFHVNNNIVSGLRYTN 165

Query: 168 TVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMP 227
           TVWK G+K                             VD AK+MLGTFSPQ EPY H MP
Sbjct: 166 TVWKTGVK-----------------------------VDRAKEMLGTFSPQLEPYNHVMP 196

Query: 228 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAAV 271
           EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW A+
Sbjct: 197 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWPAL 240

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.
Arabidopsis thaliana (taxid: 3702)

>sp|Q61599|GDIR2_MOUSE Rho GDP-dissociation inhibitor 2 OS=Mus musculus GN=Arhgdib PE=1 SV=3

 Score =  111 bits (278), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 115/224 (51%), Gaps = 38/224 (16%)

Query: 51  ETDEEDDD-DREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEV 109
           + +E DDD D + + +  PQ +LKE  E DKDDESL K+K+ LLG V    + +   P V
Sbjct: 9   QLEEADDDLDSKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDVPV--VADPTVPNV 66

Query: 110 RILSLSIV---APGRNDIVLAVPEDGKP-AGNWFTLKEGSKYSLKFTFEVSNNIVSGLKY 165
            +  LS+V   APG   I + +  D +    + F LKEG +Y +K  F+V+ +IVSGLKY
Sbjct: 67  TVTRLSLVCDSAPGP--ITMDLTGDLEALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKY 124

Query: 166 TNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHE 225
               ++ G++                             VD A  M+G++ P+PE Y   
Sbjct: 125 VQHTYRTGMR-----------------------------VDKATFMVGSYGPRPEEYEFL 155

Query: 226 MPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWA 269
            P E  P GM ARG+Y  ++ F DDD + +L   ++  I+K+W 
Sbjct: 156 TPVEEAPKGMLARGTYHNKSFFTDDDKQDHLTWEWNLAIKKDWT 199

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

>sp|Q9TU03|GDIR2_BOVIN Rho GDP-dissociation inhibitor 2 OS=Bos taurus GN=ARHGDIB PE=2 SV=3

 Score =  111 bits (277), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 112/222 (50%), Gaps = 39/222 (17%)

Query: 54  EEDDD--DREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRI 111
           EEDDD  D + + +  PQ +LKE  E DKDDESL K+K+ LLG  D   + +   P V +
Sbjct: 11  EEDDDELDGKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLG--DGPVVADPTAPNVTV 68

Query: 112 LSLSIV---APGRNDIVLAVPEDGKPAGN-WFTLKEGSKYSLKFTFEVSNNIVSGLKYTN 167
             L++V   APG   I + +  D +      F LKEG +Y +K  F+V+ +IVSGLKY  
Sbjct: 69  TRLTLVCESAPGP--ITMDLTGDLEALKKETFVLKEGVEYRVKINFKVNKDIVSGLKYVQ 126

Query: 168 TVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMP 227
             ++ G+K                             VD A  M+G++ P+PE Y    P
Sbjct: 127 HTYRTGVK-----------------------------VDKATFMVGSYGPRPEEYEFLTP 157

Query: 228 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWA 269
            E  P GM ARG+Y  ++ F DDD   +L   ++  I+K+W 
Sbjct: 158 IEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDWT 199

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|P52566|GDIR2_HUMAN Rho GDP-dissociation inhibitor 2 OS=Homo sapiens GN=ARHGDIB PE=1 SV=3

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 104/206 (50%), Gaps = 37/206 (17%)

Query: 68  PQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDI 124
           PQ +LKE  E DKDDESL K+K+ LLG  D   + +   P V +  L++V   APG   I
Sbjct: 28  PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPG--PI 83

Query: 125 VLAVPEDGKPAGN-WFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYAR 183
            + +  D +        LKEGS+Y +K  F+V+ +IVSGLKY    ++ G+K        
Sbjct: 84  TMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVK-------- 135

Query: 184 THANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSA 243
                                VD A  M+G++ P+PE Y    P E  P GM ARG+Y  
Sbjct: 136 ---------------------VDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHN 174

Query: 244 RTKFLDDDNKCYLEINYSFDIRKEWA 269
           ++ F DDD + +L   ++  I+KEW 
Sbjct: 175 KSFFTDDDKQDHLSWEWNLSIKKEWT 200

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Homo sapiens (taxid: 9606)

>sp|P19803|GDIR1_BOVIN Rho GDP-dissociation inhibitor 1 OS=Bos taurus GN=ARHGDIA PE=1 SV=3

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 109/218 (50%), Gaps = 35/218 (16%)

Query: 54  EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILS 113
           E ++D+   + +   Q +++E  E DKDDESLRK+KE LLG V      +   P V +  
Sbjct: 17  ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTR 74

Query: 114 LSIV---APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVW 170
           L++V   APG  ++ L    +     + F LKEG +Y +K +F V+  IVSG+KY    +
Sbjct: 75  LTLVCSTAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133

Query: 171 KAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEET 230
           + G+K  +T Y                             M+G++ P+ E Y    P E 
Sbjct: 134 RKGVKIDKTDY-----------------------------MVGSYGPRAEEYEFLTPMEE 164

Query: 231 TPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 268
            P GM ARGSY+ +++F DDD   +L   ++  I+KEW
Sbjct: 165 APKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEW 202

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|Q5XI73|GDIR1_RAT Rho GDP-dissociation inhibitor 1 OS=Rattus norvegicus GN=Arhgdia PE=1 SV=1

 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 109/218 (50%), Gaps = 35/218 (16%)

Query: 54  EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILS 113
           E ++D+   + +   Q +++E  E DKDDESLRK+KE LLG V      +   P V +  
Sbjct: 17  ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVIVTR 74

Query: 114 LSIV---APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVW 170
           L++V   APG  ++ L    +     + F LKEG +Y +K +F V+  IVSG+KY    +
Sbjct: 75  LTLVCSTAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133

Query: 171 KAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEET 230
           + G+K  +T Y                             M+G++ P+ E Y    P E 
Sbjct: 134 RKGVKIDKTDY-----------------------------MVGSYGPRAEEYEFLTPMEE 164

Query: 231 TPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 268
            P GM ARGSY+ +++F DDD   +L   ++  I+KEW
Sbjct: 165 APKGMLARGSYNIKSRFTDDDKTDHLSWEWNLTIKKEW 202

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Rattus norvegicus (taxid: 10116)

>sp|Q99PT1|GDIR1_MOUSE Rho GDP-dissociation inhibitor 1 OS=Mus musculus GN=Arhgdia PE=1 SV=3

 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 109/218 (50%), Gaps = 35/218 (16%)

Query: 54  EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILS 113
           E ++D+   + +   Q +++E  E DKDDESLRK+KE LLG V      +   P V +  
Sbjct: 17  ENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVIVTR 74

Query: 114 LSIV---APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVW 170
           L++V   APG  ++ L    +     + F LKEG +Y +K +F V+  IVSG+KY    +
Sbjct: 75  LTLVCSTAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133

Query: 171 KAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEET 230
           + G+K  +T Y                             M+G++ P+ E Y    P E 
Sbjct: 134 RKGVKIDKTDY-----------------------------MVGSYGPRAEEYEFLTPMEE 164

Query: 231 TPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 268
            P GM ARGSY+ +++F DDD   +L   ++  I+KEW
Sbjct: 165 APKGMLARGSYNIKSRFTDDDKTDHLSWEWNLTIKKEW 202

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

>sp|Q4R4J0|GDIR1_MACFA Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis GN=ARHGDIA PE=2 SV=1

 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 115/236 (48%), Gaps = 41/236 (17%)

Query: 38  QEEQRTSRYVTVSETDEEDDDDREQDIQLGP--QYTLKEQIEKDKDDESLRKWKEQLLGS 95
           ++E    +   ++  +EED    E  +   P  Q +++E  E DKDDESLRK+KE LLG 
Sbjct: 3   EQEPTAEQLAQIAAENEED----EHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR 58

Query: 96  VDFDNIGETLEPEVRILSLSIV---APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFT 152
           V      +   P V +  L++V   APG  ++ L    +     + F LKEG +Y +K +
Sbjct: 59  VAVS--ADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKIS 115

Query: 153 FEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQML 212
           F V+  IVSG+KY    ++ G+K  +T Y                             M+
Sbjct: 116 FRVNREIVSGMKYIQHTYRKGVKIDKTDY-----------------------------MV 146

Query: 213 GTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 268
           G++ P+ E Y    P E  P GM ARGSYS +++F DDD   +L   ++  I+K+W
Sbjct: 147 GSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 202

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Macaca fascicularis (taxid: 9541)

>sp|P52565|GDIR1_HUMAN Rho GDP-dissociation inhibitor 1 OS=Homo sapiens GN=ARHGDIA PE=1 SV=3

 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 115/236 (48%), Gaps = 41/236 (17%)

Query: 38  QEEQRTSRYVTVSETDEEDDDDREQDIQLGP--QYTLKEQIEKDKDDESLRKWKEQLLGS 95
           ++E    +   ++  +EED    E  +   P  Q +++E  E DKDDESLRK+KE LLG 
Sbjct: 3   EQEPTAEQLAQIAAENEED----EHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR 58

Query: 96  VDFDNIGETLEPEVRILSLSIV---APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFT 152
           V      +   P V +  L++V   APG  ++ L    +     + F LKEG +Y +K +
Sbjct: 59  VAVS--ADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKIS 115

Query: 153 FEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQML 212
           F V+  IVSG+KY    ++ G+K  +T Y                             M+
Sbjct: 116 FRVNREIVSGMKYIQHTYRKGVKIDKTDY-----------------------------MV 146

Query: 213 GTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 268
           G++ P+ E Y    P E  P GM ARGSYS +++F DDD   +L   ++  I+K+W
Sbjct: 147 GSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 202

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Homo sapiens (taxid: 9606)

>sp|Q95UQ1|GDIR1_DICDI Putative rho GDP-dissociation inhibitor 1 OS=Dictyostelium discoideum GN=rdiA PE=1 SV=1

 Score =  101 bits (252), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 41/212 (19%)

Query: 67  GPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVL 126
           G   ++ +  ++D +DE+L+++KE LLG+       +  +  ++ + + I   GR D + 
Sbjct: 17  GKHVSVDQLKQQDAEDEALKRYKESLLGTGVHAPKDDPRKLVIKEMKIQI--EGRPDTIY 74

Query: 127 AVPEDGKP-----AGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTY 181
             P D K          F LKE   Y +  TF + ++IVSGLK TNTV++ GIK      
Sbjct: 75  --PLDTKELIKEMKTKPFVLKESCHYKITLTFNIQHDIVSGLKQTNTVYRKGIK------ 126

Query: 182 ARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPE---ETTPSGMFAR 238
                                  V + K MLG+F+PQ   +    P    E  PSGM AR
Sbjct: 127 -----------------------VSTEKHMLGSFAPQALAHSVTNPRHGWEEAPSGMLAR 163

Query: 239 GSYSARTKFLDDDNKCYLEINYSFDIRKEWAA 270
           GSY+A+  F DDDN+ +L + Y+F I+ +W +
Sbjct: 164 GSYTAKVVFTDDDNEEHLSVEYAFSIKSDWKS 195

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them (By similarity). Regulates the Rac-dependent signaling pathways controlling cytokinesis, actin reorganization and the contractile vacuole. Required for efficient accumulation of cap at the cell cortex.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
255583030	246	Rho GDP-dissociation inhibitor, putative	0.892	0.983	0.614	1e-90
449453577	240	PREDICTED: rho GDP-dissociation inhibito	0.867	0.979	0.608	3e-85
297829346	241	rho GDP-dissociation inhibitor family pr	0.712	0.800	0.700	1e-84
255559076	243	Rho GDP-dissociation inhibitor, putative	0.878	0.979	0.591	6e-84
15231890	240	Rho GDP-dissociation inhibitor 1 [Arabid	0.712	0.804	0.691	4e-83
388508888	242	unknown [Lotus japonicus]	0.881	0.987	0.588	4e-83
224064864	220	predicted protein [Populus trichocarpa]	0.745	0.918	0.651	6e-83
224131764	205	predicted protein [Populus trichocarpa]	0.730	0.965	0.668	2e-81
449443560	259	PREDICTED: rho GDP-dissociation inhibito	0.878	0.918	0.572	9e-81
224137328	257	predicted protein [Populus trichocarpa]	0.881	0.929	0.583	2e-80

>gi|255583030|ref|XP_002532283.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis] gi|223528017|gb|EEF30098.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis]

 Score =  338 bits (868), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 169/275 (61%), Positives = 207/275 (75%), Gaps = 33/275 (12%)

Query: 1   MSLAVGALSSSNNM-VDEKRDEGENSNVAVGAAEPANLQEEQRTSRYVT---VSETDEED 56
           MSLAV + S ++NM +D+ ++E E S  +    E  +    ++ +R ++   +S  +E++
Sbjct: 1   MSLAVSSSSGTSNMGLDDNKNEEEKSETSHEHLEEGDSAAGEKYARQMSETDLSVNEEDE 60

Query: 57  DDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSI 116
           D++    I+LGPQ TLKE +EKDKDDESLRKWKEQLLGSVDF++IGETLEPEV+ILSLSI
Sbjct: 61  DEEGSHKIELGPQCTLKEHLEKDKDDESLRKWKEQLLGSVDFESIGETLEPEVKILSLSI 120

Query: 117 VAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKG 176
           ++PGR+DIVL+VPEDGKP G+WFTLKEGS Y+L F+F+VSNNIVSGLKYTNTVWK G+K 
Sbjct: 121 ISPGRSDIVLSVPEDGKPKGSWFTLKEGSHYNLMFSFQVSNNIVSGLKYTNTVWKTGVK- 179

Query: 177 KQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMF 236
                                       VDSAK+MLGTFSPQPEPY H MPEETTPSGMF
Sbjct: 180 ----------------------------VDSAKEMLGTFSPQPEPYTHVMPEETTPSGMF 211

Query: 237 ARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAAV 271
           ARGSYSA++KFLDDDNKCYLEINY+FDIRKEWAA 
Sbjct: 212 ARGSYSAKSKFLDDDNKCYLEINYTFDIRKEWAAT 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453577|ref|XP_004144533.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus] gi|449515967|ref|XP_004165019.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus]

 Score =  320 bits (821), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 168/276 (60%), Positives = 197/276 (71%), Gaps = 41/276 (14%)

Query: 1   MSLAVGALSSSNNM-VDEKRDEGENSNVAVGAAEPANLQEEQRTSRYVTVSETD----EE 55
           MSLAVGA S+S NM  DE R+EG       GA +    + E        +SET     E+
Sbjct: 1   MSLAVGAASNSKNMGFDENREEG-------GALDNHGNENEATEKISRQMSETSLSATED 53

Query: 56  DDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLS 115
           + DD   +I+LGPQ TLKE++EKDKDDESLR+WKEQLLG+VD +N GETLEPEV+ILSLS
Sbjct: 54  ETDDEGSNIELGPQRTLKEELEKDKDDESLRRWKEQLLGAVDLENAGETLEPEVKILSLS 113

Query: 116 IVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIK 175
           IV+P R D+VL +PEDG P G WFTLKEGS+YSLKF+F+V+NNIV+GLKYTNTVWK G+K
Sbjct: 114 IVSPERPDLVLPIPEDGNPKGLWFTLKEGSRYSLKFSFQVTNNIVAGLKYTNTVWKTGVK 173

Query: 176 GKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGM 235
                                        VDSAK+MLGTFSPQ E Y H MPE+TTPSGM
Sbjct: 174 -----------------------------VDSAKEMLGTFSPQLETYTHVMPEDTTPSGM 204

Query: 236 FARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAAV 271
           FARGSYSAR+KFLDDDNKCYLEINY+FDIRK+WAA 
Sbjct: 205 FARGSYSARSKFLDDDNKCYLEINYTFDIRKDWAAT 240

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829346|ref|XP_002882555.1| rho GDP-dissociation inhibitor family protein [Arabidopsis lyrata subsp. lyrata] gi|297328395|gb|EFH58814.1| rho GDP-dissociation inhibitor family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 157/224 (70%), Positives = 176/224 (78%), Gaps = 31/224 (13%)

Query: 48  TVSETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEP 107
           ++  T+EE+DDD +  +QLGPQYT+KE +EKDKDDESLRKWKEQLLGSVD  NIGETL+P
Sbjct: 49  SLCATEEEEDDDSK--LQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDP 106

Query: 108 EVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTN 167
           EVRILSL+I++PGR DIVL VPE+G P G WFTLKEGSKY+LKFTF+V+NNIVSGL+YTN
Sbjct: 107 EVRILSLAILSPGRPDIVLLVPENGNPKGMWFTLKEGSKYNLKFTFQVNNNIVSGLRYTN 166

Query: 168 TVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMP 227
           TVWK G+K                             VD AK+MLGTFSPQ EPY H MP
Sbjct: 167 TVWKTGVK-----------------------------VDRAKEMLGTFSPQLEPYNHVMP 197

Query: 228 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAAV 271
           EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW AV
Sbjct: 198 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWPAV 241

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559076|ref|XP_002520560.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis] gi|223540220|gb|EEF41793.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis]

 Score =  316 bits (810), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 161/272 (59%), Positives = 198/272 (72%), Gaps = 34/272 (12%)

Query: 5   VGALSSSNNMVDEKRDEGENSNVAVGAAEPANLQEEQ-----RTSRYVTVSETDEEDDDD 59
           +G+  +++  V E +     S  AVGA E   + E +     R     ++  TD+E++DD
Sbjct: 1   MGSDENNSEEVSETKTASAKSPSAVGAEEQHRVDESKIGGLSRQMSESSIYATDQEEEDD 60

Query: 60  REQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAP 119
            E+ I+LGPQYTLKEQ+EKDKDDESLR+WKEQLLGSVD + +GETL+PEV+I+SL+I +P
Sbjct: 61  EERKIELGPQYTLKEQLEKDKDDESLRRWKEQLLGSVDINAVGETLDPEVKIISLAIKSP 120

Query: 120 GRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQT 179
           GR+DIVL++PEDG P G WFTLKEGS+YSL+FTF+V NNIVSGLKYTNTVWK G+K    
Sbjct: 121 GRDDIVLSIPEDGNPKGTWFTLKEGSRYSLQFTFQVGNNIVSGLKYTNTVWKTGVK---- 176

Query: 180 TYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARG 239
                                    VDSAK+MLGTFSPQ EPY HEMPEETTPSG+FARG
Sbjct: 177 -------------------------VDSAKEMLGTFSPQAEPYTHEMPEETTPSGIFARG 211

Query: 240 SYSARTKFLDDDNKCYLEINYSFDIRKEWAAV 271
           SYSAR+KF+DDDNKCYLEINY+FDIRKEW + 
Sbjct: 212 SYSARSKFVDDDNKCYLEINYTFDIRKEWQST 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231890|ref|NP_187445.1| Rho GDP-dissociation inhibitor 1 [Arabidopsis thaliana] gi|21759146|sp|Q9SFC6.1|GDIR_ARATH RecName: Full=Rho GDP-dissociation inhibitor 1; Short=AtRhoGDI1; Short=Rho GDI-1 gi|6648200|gb|AAF21198.1|AC013483_22 putative RHO GDP-dissociation inhibitor 1 [Arabidopsis thaliana] gi|15866274|gb|AAL10299.1|AF412276_1 Rho GDP-dissociation inhibitor 1 [Arabidopsis thaliana] gi|21553639|gb|AAM62732.1| putative RHO GDP-dissociation inhibitor 1 [Arabidopsis thaliana] gi|26451537|dbj|BAC42866.1| putative RHO GDP-dissociation inhibitor 1 [Arabidopsis thaliana] gi|28973347|gb|AAO63998.1| putative RHO GDP-dissociation inhibitor 1 [Arabidopsis thaliana] gi|332641093|gb|AEE74614.1| Rho GDP-dissociation inhibitor 1 [Arabidopsis thaliana]

 Score =  313 bits (803), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 155/224 (69%), Positives = 174/224 (77%), Gaps = 31/224 (13%)

Query: 48  TVSETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEP 107
           ++  T+EE+DDD +  +QLGPQYT+KE +EKDKDDESLRKWKEQLLGSVD  NIGETL+P
Sbjct: 48  SLCATEEEEDDDSK--LQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDP 105

Query: 108 EVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTN 167
           EVRI SL+I++PGR DIVL VPE+G P G WFTLKEGSKY+LKFTF V+NNIVSGL+YTN
Sbjct: 106 EVRIDSLAIISPGRPDIVLLVPENGNPKGMWFTLKEGSKYNLKFTFHVNNNIVSGLRYTN 165

Query: 168 TVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMP 227
           TVWK G+K                             VD AK+MLGTFSPQ EPY H MP
Sbjct: 166 TVWKTGVK-----------------------------VDRAKEMLGTFSPQLEPYNHVMP 196

Query: 228 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAAV 271
           EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW A+
Sbjct: 197 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWPAL 240

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508888|gb|AFK42510.1| unknown [Lotus japonicus]

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 160/272 (58%), Positives = 194/272 (71%), Gaps = 33/272 (12%)

Query: 1   MSLAVGALSSSNNM-VDEKRDEGENSNVAVGAAEPANLQEEQRTSRYVTVSET--DEEDD 57
           MSLA+G +S+  +M  D+ +   +    A+  A   +   E+  +R+V+ S     E+DD
Sbjct: 1   MSLAIGVVSNCKSMGFDDDKHNVDTGKTAIDYAS-GDEHHERNLTRHVSESSIAITEDDD 59

Query: 58  DDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV 117
           DD E+ I+LGPQ TLKEQ+EKDKDDESLR+WKEQLLGSVD + +GETLEPEV+ILSL+I 
Sbjct: 60  DDLERKIELGPQVTLKEQLEKDKDDESLRRWKEQLLGSVDVNAVGETLEPEVKILSLAIK 119

Query: 118 APGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGK 177
           +PGR+DIVL VPE G P G WFTLKEGS+YSL FTF+V +NIVSGLKY NTVWK GIK  
Sbjct: 120 SPGRDDIVLPVPETGNPPGLWFTLKEGSRYSLMFTFQVGHNIVSGLKYINTVWKTGIK-- 177

Query: 178 QTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFA 237
                                      VDS K+M+GTFSPQ EPY HEMPEETTPSG+FA
Sbjct: 178 ---------------------------VDSTKEMIGTFSPQAEPYTHEMPEETTPSGIFA 210

Query: 238 RGSYSARTKFLDDDNKCYLEINYSFDIRKEWA 269
           RG+YSARTKF+DDDNK YLEINY+FDIRK+W 
Sbjct: 211 RGTYSARTKFVDDDNKMYLEINYTFDIRKDWV 242

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064864|ref|XP_002301589.1| predicted protein [Populus trichocarpa] gi|222843315|gb|EEE80862.1| predicted protein [Populus trichocarpa]

 Score =  313 bits (801), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 155/238 (65%), Positives = 181/238 (76%), Gaps = 36/238 (15%)

Query: 41  QRTSRYVTVSET-------DEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLL 93
           +RT R ++ SET       +EEDD+     IQLGPQYTLKEQ+EKDKDDESLRKWKEQLL
Sbjct: 12  ERTERQMSESETSLYATDHEEEDDEGGSNKIQLGPQYTLKEQLEKDKDDESLRKWKEQLL 71

Query: 94  GSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTF 153
           GSVD + IGETLEP+V+ LSLSI++PGR DIVL++PE+G+P G WFTLKEGS Y+LKF+F
Sbjct: 72  GSVDLNTIGETLEPDVKFLSLSILSPGRPDIVLSIPENGRPRGLWFTLKEGSPYNLKFSF 131

Query: 154 EVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLG 213
           +VSNNIVSGLKYTNTVWK G+K                             VDS+K+MLG
Sbjct: 132 QVSNNIVSGLKYTNTVWKTGLK-----------------------------VDSSKEMLG 162

Query: 214 TFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAAV 271
           T+SPQPEPY H   +ETTPSG+FARGSYSAR+KFLDDDNKCYLEINY+FDIRKEWAA 
Sbjct: 163 TYSPQPEPYTHMNAQETTPSGIFARGSYSARSKFLDDDNKCYLEINYTFDIRKEWAAT 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131764|ref|XP_002321172.1| predicted protein [Populus trichocarpa] gi|222861945|gb|EEE99487.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 153/229 (66%), Positives = 174/229 (75%), Gaps = 31/229 (13%)

Query: 40  EQRTSRYVTVSETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFD 99
           E  TS Y T  E  EEDD++    +QLGPQYTLKEQ+EKDKDDESLRKWKEQLLGSVD +
Sbjct: 8   ESETSMYATDHE--EEDDENGTNKLQLGPQYTLKEQLEKDKDDESLRKWKEQLLGSVDLN 65

Query: 100 NIGETLEPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNI 159
           NIGETLEP+V+ L+LSI++PGR DIVL++PE+GKP G WFTLKEGS +SLKF+F+VSNNI
Sbjct: 66  NIGETLEPDVKFLNLSILSPGRPDIVLSIPENGKPKGLWFTLKEGSPHSLKFSFQVSNNI 125

Query: 160 VSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQP 219
           VSGLKYTNTVWK G+K                             VDS K+MLGT+SPQP
Sbjct: 126 VSGLKYTNTVWKTGVK-----------------------------VDSTKEMLGTYSPQP 156

Query: 220 EPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 268
           E Y H  PEETTPSGMFARGSYSAR+KF DDDNKCYLEINY+F IRKEW
Sbjct: 157 EAYTHVNPEETTPSGMFARGSYSARSKFFDDDNKCYLEINYTFGIRKEW 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443560|ref|XP_004139545.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus] gi|449508966|ref|XP_004163456.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus]

 Score =  306 bits (783), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 162/283 (57%), Positives = 197/283 (69%), Gaps = 45/283 (15%)

Query: 1   MSLAVGALSSSNNMV---DEKRDEGENSNVAVGAAEPANLQEEQRTSRYV---------- 47
           MS+AV   SSS  ++   DEK  +G+  + +    E    ++E++    V          
Sbjct: 1   MSVAVEIGSSSKGIIMGFDEKDKDGKQEDSSPKLLERKKGEDEEQEVDVVPSSGMTRKMS 60

Query: 48  --TVSETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETL 105
             ++  T+EEDD+D  + I+LGPQYTLKE  EKDKDDESLR+WKEQLLG VDF+++GETL
Sbjct: 61  ESSICATEEEDDEDGRK-IELGPQYTLKELNEKDKDDESLRRWKEQLLGDVDFESVGETL 119

Query: 106 EPEVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKY 165
           EP+V+ILSL+I + GR DIVL VPE G P G WFTLKEGS+YSLKFTF+VSNNIVSGLKY
Sbjct: 120 EPDVKILSLAIKSSGRPDIVLPVPESGNPKGLWFTLKEGSRYSLKFTFQVSNNIVSGLKY 179

Query: 166 TNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHE 225
           TNTVWK G+K                             VDS K+M+GTFSPQPEPY HE
Sbjct: 180 TNTVWKTGVK-----------------------------VDSTKEMIGTFSPQPEPYDHE 210

Query: 226 MPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 268
           M EETTPSG+FARGSYSAR+KF+DDDNKCYLEINY+FDIRK+W
Sbjct: 211 MQEETTPSGIFARGSYSARSKFVDDDNKCYLEINYTFDIRKDW 253

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137328|ref|XP_002322530.1| predicted protein [Populus trichocarpa] gi|222867160|gb|EEF04291.1| predicted protein [Populus trichocarpa]

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/281 (58%), Positives = 199/281 (70%), Gaps = 42/281 (14%)

Query: 1   MSLAVGALSSSNNMVDEKRDEGENSNVAVGAAEPANLQEEQ-------RTSRYVTVSE-- 51
           MSL  G  S++ +M  +++++ E S  A     P N +E           SR ++ S   
Sbjct: 1   MSLEAGVNSNTKSMGFDEKNKEEVSETAATTKTPPNEEENNVDEPKSGGISRKMSESSLY 60

Query: 52  -TDEEDDDD---REQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEP 107
            TD+E++DD    E+ I+LGPQ TLKEQ+EKDKDDESLR+WKEQLLG+VD +  GETLEP
Sbjct: 61  GTDQEEEDDEETNERKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGAVDIEAAGETLEP 120

Query: 108 EVRILSLSIVAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTN 167
           EV+ILSL I + GR DIVL+VPE+GKP G+WFTLKEGS+YSL+FTFEV NNIVSGLKYTN
Sbjct: 121 EVKILSLEIKSSGRPDIVLSVPENGKPKGSWFTLKEGSRYSLQFTFEVKNNIVSGLKYTN 180

Query: 168 TVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMP 227
           TVWK GIK                             VDS+K+M+GTFSPQ EPY HEMP
Sbjct: 181 TVWKTGIK-----------------------------VDSSKEMIGTFSPQTEPYTHEMP 211

Query: 228 EETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 268
           EETTPSGMFARGSY+AR+KF+DDDNKCYLEINY+FDIRK+W
Sbjct: 212 EETTPSGMFARGSYAARSKFVDDDNKCYLEINYTFDIRKDW 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
TAIR|locus:2077462	240	SCN1 "SUPERCENTIPEDE1" [Arabid	0.623	0.704	0.581	1.5e-79
TAIR|locus:2027154	223	AT1G62450 [Arabidopsis thalian	0.428	0.520	0.618	1.4e-66
TAIR|locus:2008965	223	AT1G12070 [Arabidopsis thalian	0.413	0.502	0.692	1.4e-64
FB|FBgn0036921	201	RhoGDI "RhoGDI" [Drosophila me	0.291	0.393	0.390	1.2e-28
UNIPROTKB|F1P3P3	204	ARHGDIA "Uncharacterized prote	0.402	0.534	0.410	5.2e-28
ZFIN|ZDB-GENE-040426-2816	203	arhgdia "Rho GDP dissociation	0.402	0.536	0.376	5.1e-26
DICTYBASE|DDB_G0291077	197	rdiA "Rho GDP-dissociation inh	0.243	0.335	0.449	5.7e-24
POMBASE|SPAC6F12.06	205	SPAC6F12.06 "Rho GDP dissociat	0.424	0.560	0.322	1e-23
WB|WBGene00004356	191	rhi-1 [Caenorhabditis elegans	0.247	0.350	0.402	3e-21
SGD|S000002294	202	RDI1 "Rho GDP dissociation inh	0.239	0.321	0.411	7.1e-18

TAIR|locus:2077462 SCN1 "SUPERCENTIPEDE1" [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 1.5e-79, Sum P(2) = 1.5e-79
 Identities = 104/179 (58%), Positives = 124/179 (69%)

Query:     1 MSLAVGA----LSSSNNMVDEKRDEGENSNVAVGAAEPANLQEEQRTSRYVTVSXXXXXX 56
             MSL  GA       +NN  + K  + ENS+    A + A  ++   +S   T        
Sbjct:     1 MSLVSGARDMGFDDNNNNKNNKDGDDENSSSRTRADDDALSRQMSESSLCATEEEEDDDS 60

Query:    57 XXXXXXXIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSI 116
                    +QLGPQYT+KE +EKDKDDESLRKWKEQLLGSVD  NIGETL+PEVRI SL+I
Sbjct:    61 K------LQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDPEVRIDSLAI 114

Query:   117 VAPGRNDIVLAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIK 175
             ++PGR DIVL VPE+G P G WFTLKEGSKY+LKFTF V+NNIVSGL+YTNTVWK G+K
Sbjct:   115 ISPGRPDIVLLVPENGNPKGMWFTLKEGSKYNLKFTFHVNNNIVSGLRYTNTVWKTGVK 173

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009932 "cell tip growth" evidence=IMP

GO:0010053 "root epidermal cell differentiation" evidence=IMP

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2027154 AT1G62450 [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
 Identities = 73/118 (61%), Positives = 93/118 (78%)

Query:    64 IQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRND 123
             ++LGP   LKEQ+E+DKDDESLR+WKEQLLG VD +++GET +P V+IL L+I +P R +
Sbjct:    45 LELGPMIALKEQLERDKDDESLRRWKEQLLGVVDLEDVGETPDPVVKILDLTIRSPDREE 104

Query:   124 IVLAVPEDG--KPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQT 179
             +VL +PEDG   P G WFT+KEGSKY+L F F V+NNIVSGL+Y NTVWK G+K   T
Sbjct:   105 MVLTIPEDGLPNPKGPWFTIKEGSKYTLVFNFRVTNNIVSGLRYNNTVWKTGVKVDST 162

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2008965 AT1G12070 [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
 Identities = 79/114 (69%), Positives = 97/114 (85%)

Query:    64 IQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRND 123
             ++LGP   LKEQ+EKDKDDESLR+WKEQLLGSVD + +GET +P V+IL+L+I +P R D
Sbjct:    45 LELGPMIALKEQLEKDKDDESLRRWKEQLLGSVDLEEVGETPDPLVKILTLTIRSPDRED 104

Query:   124 IVLAVPEDGKPA--GNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIK 175
             +VL +PE+GKPA  G WFTLKEGSKY+L FTF V+NNIVSGL+Y+NTVWK GIK
Sbjct:   105 MVLTIPENGKPASKGPWFTLKEGSKYTLIFTFRVTNNIVSGLQYSNTVWKTGIK 158

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS

GO:0007015 "actin filament organization" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

FB|FBgn0036921 RhoGDI "RhoGDI" [Drosophila melanogaster (taxid:7227)]

 Score = 168 (64.2 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
 Identities = 32/82 (39%), Positives = 52/82 (63%)

Query:   191 VIHS--YVLLTTSF-ISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKF 247
             ++H   YV  T+   ++VD  K M+G++ P+ E   +  P E  PSG F+RG+YS  + F
Sbjct:   120 IVHGLKYVQKTSRLGVNVDKMKHMVGSYPPKKEIQFYLTPAEEAPSGTFSRGTYSVSSVF 179

Query:   248 LDDDNKCYLEINYSFDIRKEWA 269
              DDD   +LE +++F+I+K+WA
Sbjct:   180 TDDDKHIHLEWDWTFEIKKDWA 201

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1P3P3 ARHGDIA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
 Identities = 48/117 (41%), Positives = 67/117 (57%)

Query:    69 QYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIV 125
             Q +++E  E DKDDESLRK+KE LLG+V      +   P V +  L++V   APG  ++ 
Sbjct:    32 QKSIQEIQELDKDDESLRKYKEALLGAVTVT--ADPNAPNVVVTKLTLVCTTAPGPLELD 89

Query:   126 LAVP-EDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTY 181
             L    E  K     F LKEG +Y +K +F V+  IVSGLKY    ++ G+K  +T Y
Sbjct:    90 LTGDLESYKKQA--FVLKEGVEYRIKISFRVNREIVSGLKYIQHTFRKGVKIDKTEY 144

GO:0005737 "cytoplasm" evidence=IEA

GO:0001772 "immunological synapse" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

ZFIN|ZDB-GENE-040426-2816 arhgdia "Rho GDP dissociation inhibitor (GDI) alpha" [Danio rerio (taxid:7955)]

 Score = 162 (62.1 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
 Identities = 44/117 (37%), Positives = 68/117 (58%)

Query:    69 QYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIV 125
             Q +L+E  E D+DDESLRK+KE LLGS       +   P V++  L+++   AP    +V
Sbjct:    31 QKSLQEIQELDQDDESLRKYKEALLGSCAV--AADPNAPNVQVTRLTLMCETAPA--PLV 86

Query:   126 LAVPEDGKPAGNW-FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTY 181
             L +  D +      F LKEG +Y +K +F+V+  IVSGLKY    ++ G++  ++ Y
Sbjct:    87 LDLQGDLESFKKQSFILKEGVEYRIKISFKVNKEIVSGLKYVQQTFRKGVRIDKSDY 143

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

DICTYBASE|DDB_G0291077 rdiA "Rho GDP-dissociation inhibitor 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 156 (60.0 bits), Expect = 5.7e-24, Sum P(2) = 5.7e-24
 Identities = 31/69 (44%), Positives = 43/69 (62%)

Query:   203 ISVDSAKQMLGTFSPQPEPYIHEMPE---ETTPSGMFARGSYSARTKFLDDDNKCYLEIN 259
             I V + K MLG+F+PQ   +    P    E  PSGM ARGSY+A+  F DDDN+ +L + 
Sbjct:   125 IKVSTEKHMLGSFAPQALAHSVTNPRHGWEEAPSGMLARGSYTAKVVFTDDDNEEHLSVE 184

Query:   260 YSFDIRKEW 268
             Y+F I+ +W
Sbjct:   185 YAFSIKSDW 193

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0035023 "regulation of Rho protein signal transduction" evidence=TAS

GO:0017048 "Rho GTPase binding" evidence=TAS

GO:0006907 "pinocytosis" evidence=TAS

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0000910 "cytokinesis" evidence=TAS

GO:0000902 "cell morphogenesis" evidence=TAS

GO:0030036 "actin cytoskeleton organization" evidence=TAS

GO:0005737 "cytoplasm" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPAC6F12.06 SPAC6F12.06 "Rho GDP dissociation inhibitor Rdi1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 150 (57.9 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
 Identities = 39/121 (32%), Positives = 63/121 (52%)

Query:    64 IQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRND 123
             + LG + +L E ++ D +DESL+KWK  L G              V IL LS++  GR+ 
Sbjct:    27 VSLGEKKSLNEYMKMDAEDESLQKWKASL-GITGTGYSPSNDRRTVVILKLSLLVDGRDP 85

Query:   124 IVLAVPEDGKPAGN----WFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQT 179
             + + + ED           FT+KEGS++ +   F V + ++SGL+Y  TV + G    +T
Sbjct:    86 VDVNM-EDAASVEQIRKKGFTIKEGSEFKIGVKFRVQHEVISGLRYVQTVRRRGFVVDKT 144

Query:   180 T 180
             +
Sbjct:   145 S 145

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=ISO

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0007015 "actin filament organization" evidence=ISO

GO:0007264 "small GTPase mediated signal transduction" evidence=ISO

WB|WBGene00004356 rhi-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 139 (54.0 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
 Identities = 27/67 (40%), Positives = 41/67 (61%)

Query:   201 SFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINY 260
             S I+V++ K M+G+++P+ E   ++ P E  PSGM  RG Y   +K  DDDN  YL+  +
Sbjct:   125 SGITVENEKYMMGSYAPKLEIQEYKSPNEEAPSGMMHRGKYKVYSKITDDDNNVYLDWQW 184

Query:   261 SFDIRKE 267
             +  I KE
Sbjct:   185 TLHITKE 191

GO:0005737 "cytoplasm" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0016020 "membrane" evidence=IDA

SGD|S000002294 RDI1 "Rho GDP dissociation inhibitor" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 137 (53.3 bits), Expect = 7.1e-18, Sum P(2) = 7.1e-18
 Identities = 28/68 (41%), Positives = 44/68 (64%)

Query:   203 ISVDSAKQMLGTFSP--QPEPYIH-EMPEETTPSGMFARGSYSARTKFLDDDNKCYLEIN 259
             I+VD     LG+++P  + +P+   E+PE   PSG  ARG+YSA +KF+DDD   +L +N
Sbjct:   135 IAVDKIDDHLGSYAPNTKTKPFYEVELPESEAPSGFLARGNYSAVSKFIDDDKTNHLTLN 194

Query:   260 YSFDIRKE 267
             +  +I K+
Sbjct:   195 WGVEIVKK 202

GO:0007015 "actin filament organization" evidence=IMP;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0032889 "regulation of vacuole fusion, non-autophagic" evidence=IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005934 "cellular bud tip" evidence=IDA

GO:0005935 "cellular bud neck" evidence=IDA

GO:0043547 "positive regulation of GTPase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SFC6	GDIR_ARATH	No assigned EC number	0.6919	0.7121	0.8041	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_300929.1 annotation not avaliable (241 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	271
pfam02115	200	pfam02115, Rho_GDI, RHO protein GDP dissociation i	1e-72

>gnl|CDD|216881 pfam02115, Rho_GDI, RHO protein GDP dissociation inhibitor

 Score =  220 bits (563), Expect = 1e-72
 Identities = 80/215 (37%), Positives = 119/215 (55%), Gaps = 32/215 (14%)

Query: 54  EEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILS 113
           E+++D+   + +  PQ +LKE  E DK+DESLRK+KE+LLG V    + +  EP V + S
Sbjct: 17  EDEEDEDSVNYKPPPQKSLKEIQELDKEDESLRKYKEKLLGPVP--VLVDPKEPNVVVTS 74

Query: 114 LSIVAPGRNDIVLAVPED-GKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKA 172
           L++++ G   I L +  D  +     F LKEGS+Y LK +F+V   IVSGLKY    ++A
Sbjct: 75  LTLLSEGAPPIELDLTGDLKQLKSQLFVLKEGSEYRLKISFKVQREIVSGLKYVQHTYRA 134

Query: 173 GIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTP 232
           G++                             VD  K M+G++ P+ E Y +  PEE  P
Sbjct: 135 GLR-----------------------------VDKTKYMVGSYGPRAEEYEYLTPEEEAP 165

Query: 233 SGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKE 267
           SG  ARGSYSA++KF DDD   +L   ++ +I+K+
Sbjct: 166 SGALARGSYSAKSKFTDDDKTDHLSWEWNLEIKKD 200

Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
KOG3205	200	consensus Rho GDP-dissociation inhibitor [Signal t	100.0
PF02115	200	Rho_GDI: RHO protein GDP dissociation inhibitor; I	100.0
PF02221	134	E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The	95.65
cd00917	122	PG-PI_TP The phosphatidylinositol/phosphatidylglyc	88.13
smart00737	118	ML Domain involved in innate immunity and lipid me	80.72

>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms]

Probab=100.00  E-value=1e-81  Score=551.58  Aligned_cols=184  Identities=56%  Similarity=0.973  Sum_probs=176.3

Q ss_pred             CccccccCCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCCCCCCCCCCeEEEEEEEEEeCCCCCeEEeCCCCCCC
Q 024190           55 EDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPEDGKP  134 (271)
Q Consensus        55 ed~d~~~~~yk~g~~ktl~E~~~lDkdDESLrKwKesLLG~~~~~~i~~~~~p~V~I~sL~i~~~gr~di~l~L~~d~~~  134 (271)
                      ++|++.+..|++||||||+||+++|+||||||||||||||+++  .++++++|+|+|++|+|+++|||+|+|+|++++.+
T Consensus        15 ~~e~~~d~~yk~~p~ksl~E~~~~DkdDESL~kwKe~Llg~~~--~~~~~~dp~VvV~~LtLl~~~r~pi~ldlt~~~~~   92 (200)
T KOG3205|consen   15 EDEEDEDENYKLPPQKSLKEILELDKDDESLRKWKEQLLGSVD--VIVDPNDPRVVVLKLTLLSEGRPPIVLDLTGDLSP   92 (200)
T ss_pred             ccccccccccCCCchhhHHHHHhcCcchHHHHHHHHHhCCCCC--cccCCCCCeEEEEEEEEEeCCCCCeEEeCCCCccc
Confidence            3333444489999999999999999999999999999999998  78899999999999999999999999999999864


Q ss_pred             --CCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEeccccCccccccccccccceeeeeeeeeeeeeeeecccccee
Q 024190          135 --AGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQML  212 (271)
Q Consensus       135 --k~~~FtIKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~ml  212 (271)
                        ++.||+|||||+|+|+|+|+|||+|||||||+|+|||+||+                             ||+++.||
T Consensus        93 ~~k~~~f~iKEGs~Y~lki~F~Vq~eIvSGLrY~q~v~r~Gv~-----------------------------VDk~~~Ml  143 (200)
T KOG3205|consen   93 ELKKQWFTIKEGSEYRLKISFRVQREIVSGLRYVQTVYRTGVK-----------------------------VDKTKYML  143 (200)
T ss_pred             cccCceEEeecCcEEEEEEEEEEeeheeccceeeeEEeecceE-----------------------------Eeehhhhc
Confidence              99999999999999999999999999999999999999999                             99999999


Q ss_pred             eeeCCCCCCeeecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEEEEEeeccC
Q 024190          213 GTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWA  269 (271)
Q Consensus       213 Gsy~P~~E~Y~~~~peEeaPSGmlARGsY~arSkF~DDD~~~~Le~~wsfdI~K~W~  269 (271)
                      |||+||.|+|+|.+|+|||||||||||+|+|+|+|+|||++|||+|+|+|+|+|+|+
T Consensus       144 GSy~P~~e~ye~~~p~eeAPsGmlaRG~Ys~~skF~DDDk~~hLe~~w~~~I~K~W~  200 (200)
T KOG3205|consen  144 GSYGPQAEPYEFVTPEEEAPSGMLARGSYSAKSKFTDDDKTCHLEWNWTFDIKKEWK  200 (200)
T ss_pred             ccCCCCCcceeeeCCcccCCccceeecceeeeeEEecCCCceEEEEEEEEEEeeccC
Confidence            999999999999999999999999999999999999999999999999999999995

>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them

Probab=100.00  E-value=2.2e-75  Score=512.08  Aligned_cols=186  Identities=51%  Similarity=0.835  Sum_probs=150.6

Q ss_pred             CCCcCccccccCCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCCCCCCCCCCeEEEEEEEEEeCCCCCeEEeCCC
Q 024190           51 ETDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRNDIVLAVPE  130 (271)
Q Consensus        51 ~~~eed~d~~~~~yk~g~~ktl~E~~~lDkdDESLrKwKesLLG~~~~~~i~~~~~p~V~I~sL~i~~~gr~di~l~L~~  130 (271)
                      ..+|+++++.+.+|++|+++||+||++||++|||||||||||||.++  .++++++|+|+|++|+|+++|||||+|+|+.
T Consensus        14 ~~~~~~~~~~~~~yk~~~~ksl~e~~~lD~eDESL~k~Ke~LLG~~~--~~~d~~~p~V~v~~l~l~~eg~p~i~ldl~~   91 (200)
T PF02115_consen   14 EEEEDEEDEETPGYKPPPKKSLKEIQELDKEDESLRKWKESLLGSAD--VIGDPNDPKVIVKSLTLVVEGRPPIVLDLTG   91 (200)
T ss_dssp             CTSSSSS---S----------HHHHHHTTTT-HHHHHHHHHHH-SS----SS-STS-SEEEEEEEEEETTSS-EEEETTS
T ss_pred             ccccccccccccccCCCccCCHHHHHhcCcCcHHHHHHHHhhcCCCc--ccCCCCCCeEEEEEEEEEcCCCCCeeeeccC
Confidence            44566667777889999999999999999999999999999999887  6789999999999999999999999999998


Q ss_pred             CC-CCCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEeccccCccccccccccccceeeeeeeeeeeeeeeecccc
Q 024190          131 DG-KPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAK  209 (271)
Q Consensus       131 d~-~~k~~~FtIKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~  209 (271)
                      +. .+++.+|+|||||+|+|+|+|+|+|+||+||||+|+|||+||+                             ||+.+
T Consensus        92 ~~~~~k~~~f~IKEGs~Y~l~i~F~V~~~ivsGL~Y~q~Vkr~Gi~-----------------------------Vdk~~  142 (200)
T PF02115_consen   92 DLEDLKKKPFTIKEGSKYRLKITFKVQHEIVSGLKYVQTVKRKGIP-----------------------------VDKRE  142 (200)
T ss_dssp             -GGGGGGSEEEEETT-EEEEEEEEEE-SS-EEEEEEEEEEEETTEE-----------------------------EEEEE
T ss_pred             ccccccCCcEEccCCCEEEEEEEEEECCccccCcEEEEEEEECCEe-----------------------------Ecccc
Confidence            86 4789999999999999999999999999999999999999999                             99999


Q ss_pred             ceeeeeCCCCCCeeecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEEEEEeec
Q 024190          210 QMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKE  267 (271)
Q Consensus       210 ~mlGsy~P~~E~Y~~~~peEeaPSGmlARGsY~arSkF~DDD~~~~Le~~wsfdI~K~  267 (271)
                      +|||||+|++++|+|.||+|+|||||||||+|+|+|+|+|||++|||+|+|+|+|+|+
T Consensus       143 ~miGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~aks~f~DdD~~~~l~~~w~feI~Kd  200 (200)
T PF02115_consen  143 EMIGSYAPQTEPYEKTFPEEEAPSGMLARGSYTAKSKFVDDDKNVHLEWEWSFEIKKD  200 (200)
T ss_dssp             EEEEEE--ESSEEEEEEEEEE--BSTTT-EEEEEEEEEEETTSSECEEEEEEEEEESS
T ss_pred             eeeeccCCCCcceEEeCcCccCCCceeEeeeeeEEEEEEeCCCcEEEEEEEEEEEecC
Confidence            9999999999999999999999999999999999999999999999999999999996

The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....

>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products

Probab=95.65  E-value=0.59  Score=36.68  Aligned_cols=103  Identities=22%  Similarity=0.351  Sum_probs=61.8

Q ss_pred             eEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecc-ccCccccccccccccceeeeeeeeeeeeeeeeccccce--eee
Q 024190          138 WFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAG-IKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQM--LGT  214 (271)
Q Consensus       138 ~FtIKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~G-Ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~m--lGs  214 (271)
                      +-.++-|..+++.++|.+.++..++++-.-.++-.| ++.   ||..             +..    ..|-=+.|  .|.
T Consensus        25 pC~~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g~~~i---p~~g-------------~~~----~~d~C~~~~~~~~   84 (134)
T PF02221_consen   25 PCPLKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGGWIPI---PFPG-------------LCE----YYDLCDNLFGNGL   84 (134)
T ss_dssp             SEEEETTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEE---EEES-------------SSC----EEEEEGTSCCSST
T ss_pred             CCcccCCCEEEEEEEEEEccccccCCEEEEEEEECCcEEE---cccc-------------ccC----ccchhhhcccccc
Confidence            466888999999999999999999998877777776 661   1110             000    00111111  111


Q ss_pred             eCCC-CC---CeeecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEEEEE
Q 024190          215 FSPQ-PE---PYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDI  264 (271)
Q Consensus       215 y~P~-~E---~Y~~~~peEeaPSGmlARGsY~arSkF~DDD~~~~Le~~wsfdI  264 (271)
                      .=|- +.   .|.++++   .| -.+..|.|+++-+++|++++..+=++..++|
T Consensus        85 ~CPi~~G~~~~~~~~~~---i~-~~~p~~~~~i~~~l~d~~~~~i~C~~~~v~I  134 (134)
T PF02221_consen   85 SCPIKAGEYYTYTYTIP---IP-KIYPPGKYTIQWKLTDQDGEEIACFEFPVKI  134 (134)
T ss_dssp             TSTBTTTEEEEEEEEEE---ES-TTSSSEEEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             cCccCCCcEEEEEEEEE---cc-cceeeEEEEEEEEEEeCCCCEEEEEEEEeEC
Confidence            1121 11   2344443   22 2344459999999999998776666666655

It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....

>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure

Probab=88.13  E-value=5  Score=32.40  Aligned_cols=35  Identities=17%  Similarity=0.120  Sum_probs=30.7

Q ss_pred             eccCCeEEEEEEEEEeeeeeecceeEEEEEecccc
Q 024190          141 LKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIK  175 (271)
Q Consensus       141 IKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk  175 (271)
                      ++.|...++.+.|..+.++-+|++-.=.++-.||+
T Consensus        24 ~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~~~i~   58 (122)
T cd00917          24 PAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIR   58 (122)
T ss_pred             cCCCCcEEEEEEEEECcCcCCCCEEEEEEEECCEE
Confidence            78899999999999999988887777688888888

These proteins belong to the ML domain family.

>smart00737 ML Domain involved in innate immunity and lipid metabolism

Probab=80.72  E-value=16  Score=28.55  Aligned_cols=85  Identities=24%  Similarity=0.478  Sum_probs=47.4

Q ss_pred             ccCCeEEEEEEEEEeeeeeecceeEEEEEec-cccCccccccccccccceeeeeeeeeeeeeeeeccccceeeeeCCCC-
Q 024190          142 KEGSKYSLKFTFEVSNNIVSGLKYTNTVWKA-GIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQP-  219 (271)
Q Consensus       142 KEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~-GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~mlGsy~P~~-  219 (271)
                      +-|...++.+.|..++++-+ |+ +.+..+. |+.   .||.....+.-                   + .+|..=|-. 
T Consensus        22 ~~g~~~~i~i~f~~~~~~~~-~~-~~v~~~~~g~~---ip~~~~~~d~C-------------------~-~~~~~CPl~~   76 (118)
T smart00737       22 VRGKTLTISISFTLNEDISK-LK-VVVHVKIGGIE---VPIPGETYDLC-------------------K-LLGSKCPIEK   76 (118)
T ss_pred             CCCCEEEEEEEEEEcccceE-EE-EEEEEEECCEE---EeccCCCCCcc-------------------c-cCCCCCCCCC
Confidence            78899999999999888766 54 4544444 433   01111000110                   0 113333332 


Q ss_pred             -CC--eeecCCCCCCCceeeeeeeeeeeEEEEeCCCceE
Q 024190          220 -EP--YIHEMPEETTPSGMFARGSYSARTKFLDDDNKCY  255 (271)
Q Consensus       220 -E~--Y~~~~peEeaPSGmlARGsY~arSkF~DDD~~~~  255 (271)
                       +.  |...++   .|+ .+-+|+|.++..++|+|+...
T Consensus        77 G~~~~~~~~~~---v~~-~~P~~~~~v~~~l~d~~~~~i  111 (118)
T smart00737       77 GETVNYTNSLT---VPG-IFPPGKYTVKWELTDEDGEEL  111 (118)
T ss_pred             CeeEEEEEeeE---ccc-cCCCeEEEEEEEEEcCCCCEE
Confidence             22  333332   222 555789999999999887653

ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	271
1ds6_B	180	Crystal Structure Of A Rac-Rhogdi Complex Length =		9e-24
1fst_A	182	Crystal Structure Of Truncated Human Rhogdi Triple		3e-23
4f38_B	204	Crystal Structure Of Geranylgeranylated Rhoa In Com		4e-23
1doa_B	219	Structure Of The Rho Family Gtp-Binding Protein Cdc		4e-23
1cc0_E	204	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		4e-23
1fso_A	139	Crystal Structure Of Truncated Human Rhogdi Quadrup		4e-17
2jhw_A	138	Crystal Structure Of Rhogdi E155a, E157a Mutant Len		1e-16
1qvy_A	139	Crystal Structure Of Rhogdi K(199,200)r Double Muta		2e-16
1ft3_A	139	Crystal Structure Of Truncated Rhogdi K141a Mutant		3e-16
2jhz_A	138	Crystal Structure Of Rhogdi E155s, E157s Mutant Len		3e-16
1ajw_A	145	Structure Of Rhogdi: A C-Terminal Binding Domain Ta		3e-16
2jhx_A	138	Crystal Structure Of Rhogdi E155h, E157h Mutant Len		3e-16
2jht_A	138	Crystal Structure Of Rhogdi K135t,K138t,K141t Mutan		5e-16
1kmt_A	141	Crystal Structure Of Rhogdi Glu(154,155)ala Mutant		1e-15
2jhu_A	138	Crystal Structure Of Rhogdi E154a,E155a Mutant Leng		1e-15
2jhs_A	138	Crystal Structure Of Rhogdi K135h,K138h,K141h Mutan		1e-15
1ft0_A	139	Crystal Structure Of Truncated Human Rhogdi K113a M		2e-15
2ji0_A	138	Crystal Structure Of Rhogdi K138y, K141y Mutant Len		3e-15
2bxw_A	141	Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mut		5e-15
1rho_A	145	Structure Of Rho Guanine Nucleotide Dissociation In		4e-14

>pdb|1DS6|B Chain B, Crystal Structure Of A Rac-Rhogdi Complex Length = 180

Iteration: 1
 Score =  107 bits (266), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 104/206 (50%), Gaps = 37/206 (17%)
Query: 68  PQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDI 124
           PQ +LKE  E DKDDESL K+K+ LLG  D   + +   P V +  L++V   APG   I
Sbjct: 7   PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPG--PI 62
Query: 125 VLAVPEDGKP-AGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYAR 183
            + +  D +        LKEGS+Y +K  F+V+ +IVSGLKY    ++ G+K        
Sbjct: 63  TMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVK-------- 114
Query: 184 THANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSA 243
                                VD A  M+G++ P+PE Y    P E  P GM ARG+Y  
Sbjct: 115 ---------------------VDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHN 153
Query: 244 RTKFLDDDNKCYLEINYSFDIRKEWA 269
           ++ F DDD + +L   ++  I+KEW 
Sbjct: 154 KSFFTDDDKQDHLSWEWNLSIKKEWG 179

>pdb|1FST|A Chain A, Crystal Structure Of Truncated Human Rhogdi Triple Mutant Length = 182

Iteration: 1
 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 35/203 (17%)
Query: 69  QYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIV 125
           Q +++E  E DKDDESLRK+KE LLG V      +   P V +  L++V   APG  ++ 
Sbjct: 10  QKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTGLTLVCSSAPGPLELD 67
Query: 126 LAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTH 185
           L    +     + F LKEG +Y +K +F V+  IVSG+KY    ++AG+           
Sbjct: 68  LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGV----------- 115
Query: 186 ANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSART 245
                             ++D+   M+G++ P+ E Y    P E  P GM ARGSYS ++
Sbjct: 116 ------------------AIDATDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKS 157
Query: 246 KFLDDDNKCYLEINYSFDIRKEW 268
           +F DDD   +L   ++  I+K+W
Sbjct: 158 RFTDDDKTDHLSWEWNLTIKKDW 180

>pdb|4F38|B Chain B, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 204

Iteration: 1
 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 102/203 (50%), Gaps = 35/203 (17%)
Query: 69  QYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIV 125
           Q +++E  E DKDDESLRK+KE LLG V      +   P V +  L++V   APG  ++ 
Sbjct: 32  QKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTRLTLVCSTAPGPLELD 89
Query: 126 LAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTH 185
           L    +     + F LKEG +Y +K +F V+  IVSG+KY    ++ G+K  +T Y    
Sbjct: 90  LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY---- 144
Query: 186 ANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSART 245
                                    M+G++ P+ E Y    P E  P GM ARGSY+ ++
Sbjct: 145 -------------------------MVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKS 179
Query: 246 KFLDDDNKCYLEINYSFDIRKEW 268
           +F DDD   +L   ++  I+KEW
Sbjct: 180 RFTDDDRTDHLSWEWNLTIKKEW 202

>pdb|1DOA|B Chain B, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 219

Iteration: 1
 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 102/203 (50%), Gaps = 35/203 (17%)
Query: 69  QYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIV 125
           Q +++E  E DKDDESLRK+KE LLG V      +   P V +  L++V   APG  ++ 
Sbjct: 47  QKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTRLTLVCSTAPGPLELD 104
Query: 126 LAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTH 185
           L    +     + F LKEG +Y +K +F V+  IVSG+KY    ++ G+K  +T Y    
Sbjct: 105 LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY---- 159
Query: 186 ANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSART 245
                                    M+G++ P+ E Y    P E  P GM ARGSY+ ++
Sbjct: 160 -------------------------MVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKS 194
Query: 246 KFLDDDNKCYLEINYSFDIRKEW 268
           +F DDD   +L   ++  I+KEW
Sbjct: 195 RFTDDDRTDHLSWEWNLTIKKEW 217

>pdb|1CC0|E Chain E, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 204

Iteration: 1
 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 102/203 (50%), Gaps = 35/203 (17%)
Query: 69  QYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIV---APGRNDIV 125
           Q +++E  E DKDDESLRK+KE LLG V      +   P V +  L++V   APG  ++ 
Sbjct: 32  QKSIQEIQELDKDDESLRKYKEALLGRVAVS--ADPNVPNVVVTGLTLVCSSAPGPLELD 89
Query: 126 LAVPEDGKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTH 185
           L    +     + F LKEG +Y +K +F V+  IVSG+KY    ++ G+K  +T Y    
Sbjct: 90  LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY---- 144
Query: 186 ANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSART 245
                                    M+G++ P+ E Y    P E  P GM ARGSYS ++
Sbjct: 145 -------------------------MVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKS 179
Query: 246 KFLDDDNKCYLEINYSFDIRKEW 268
           +F DDD   +L   ++  I+K+W
Sbjct: 180 RFTDDDKTDHLSWEWNLTIKKDW 202

>pdb|1FSO|A Chain A, Crystal Structure Of Truncated Human Rhogdi Quadruple Mutant Length = 139

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
           F LKEG +Y +K +F V+  IVSG+KY    ++AG+                        
Sbjct: 37  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGV------------------------ 72
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
                ++D+   M+G++ P+ E Y    P E  P GM ARGSYS +++F DDD   +L  
Sbjct: 73  -----AIDATDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 127
Query: 259 NYSFDIRKEW 268
            ++F I+K+W
Sbjct: 128 EWNFTIKKDW 137

>pdb|2JHW|A Chain A, Crystal Structure Of Rhogdi E155a, E157a Mutant Length = 138

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+K  +T Y                 
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY----------------- 80
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
                       M+G++ P+ E Y    P E  P GM ARGSYS +++F DDD   +L  
Sbjct: 81  ------------MVGSYGPRAEAYAFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128
Query: 259 NYSFDIRKEW 268
            ++  I+K+W
Sbjct: 129 EWNLTIKKDW 138

>pdb|1QVY|A Chain A, Crystal Structure Of Rhogdi K(199,200)r Double Mutant Length = 139

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+K  +T Y                 
Sbjct: 37  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY----------------- 79
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
                       M+G++ P+ E Y    P E  P GM ARGSYS +++F DDD   +L  
Sbjct: 80  ------------MVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 127
Query: 259 NYSFDIRKEW 268
            ++  IR++W
Sbjct: 128 EWNLTIRRDW 137

>pdb|1FT3|A Chain A, Crystal Structure Of Truncated Rhogdi K141a Mutant Length = 139

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+K                       
Sbjct: 37  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVK----------------------- 73
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
                 +D+   M+G++ P+ E Y    P E  P GM ARGSYS +++F DDD   +L  
Sbjct: 74  ------IDATDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 127
Query: 259 NYSFDIRKEW 268
            ++  I+K+W
Sbjct: 128 EWNLTIKKDW 137

>pdb|2JHZ|A Chain A, Crystal Structure Of Rhogdi E155s, E157s Mutant Length = 138

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+K  +T Y                 
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY----------------- 80
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
                       M+G++ P+ E Y    P E  P GM ARGSYS +++F DDD   +L  
Sbjct: 81  ------------MVGSYGPRAESYSFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128
Query: 259 NYSFDIRKEW 268
            ++  I+K+W
Sbjct: 129 EWNLTIKKDW 138

>pdb|1AJW|A Chain A, Structure Of Rhogdi: A C-Terminal Binding Domain Targets An N-Terminal Inhibitory Peptide To Gtpases, Nmr, 20 Structures Length = 145

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+K  +T Y                 
Sbjct: 43  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY----------------- 85
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
                       M+G++ P+ E Y    P E  P GM ARGSY+ +++F DDD   +L  
Sbjct: 86  ------------MVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSW 133
Query: 259 NYSFDIRKEW 268
            ++  I+KEW
Sbjct: 134 EWNLTIKKEW 143

>pdb|2JHX|A Chain A, Crystal Structure Of Rhogdi E155h, E157h Mutant Length = 138

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+K  +T Y                 
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY----------------- 80
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
                       M+G++ P+ E Y    P E  P GM ARGSYS +++F DDD   +L  
Sbjct: 81  ------------MVGSYGPRAEHYHFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128
Query: 259 NYSFDIRKEW 268
            ++  I+K+W
Sbjct: 129 EWNLTIKKDW 138

>pdb|2JHT|A Chain A, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant Length = 138

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+                        
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRTGV------------------------ 73
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
                ++D+   M+G++ P+ E Y    P E  P GM ARGSYS +++F DDD   +L  
Sbjct: 74  -----TIDTTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128
Query: 259 NYSFDIRKEW 268
            ++  I+K+W
Sbjct: 129 EWNLTIKKDW 138

>pdb|1KMT|A Chain A, Crystal Structure Of Rhogdi Glu(154,155)ala Mutant Length = 141

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+K  +T Y                 
Sbjct: 39  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY----------------- 81
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
                       M+G++ P+   Y    P E  P GM ARGSYS +++F DDD   +L  
Sbjct: 82  ------------MVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 129
Query: 259 NYSFDIRKEW 268
            ++  I+K+W
Sbjct: 130 EWNLTIKKDW 139

>pdb|2JHU|A Chain A, Crystal Structure Of Rhogdi E154a,E155a Mutant Length = 138

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+K  +T Y                 
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY----------------- 80
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
                       M+G++ P+   Y    P E  P GM ARGSYS +++F DDD   +L  
Sbjct: 81  ------------MVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128
Query: 259 NYSFDIRKEW 268
            ++  I+K+W
Sbjct: 129 EWNLTIKKDW 138

>pdb|2JHS|A Chain A, Crystal Structure Of Rhogdi K135h,K138h,K141h Mutant Length = 138

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+    T Y                 
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRHGVHIDHTDY----------------- 80
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
                       M+G++ P+ E Y    P E  P GM ARGSYS +++F DDD   +L  
Sbjct: 81  ------------MVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128
Query: 259 NYSFDIRKEW 268
            ++  I+K+W
Sbjct: 129 EWNLTIKKDW 138

>pdb|1FT0|A Chain A, Crystal Structure Of Truncated Human Rhogdi K113a Mutant Length = 139

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
           F LKEG +Y +  +F V+  IVSG+KY    ++ G+K  +T Y                 
Sbjct: 37  FVLKEGVEYRIAISFRVNREIVSGMKYIQHTYRKGVKIDKTDY----------------- 79
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
                       M+G++ P+ E Y    P E  P GM ARGSYS +++F DDD   +L  
Sbjct: 80  ------------MVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 127
Query: 259 NYSFDIRKEW 268
            ++  I+K+W
Sbjct: 128 EWNLTIKKDW 137

>pdb|2JI0|A Chain A, Crystal Structure Of Rhogdi K138y, K141y Mutant Length = 138

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+                        
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGV------------------------ 73
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
                 +D    M+G++ P+ E Y    P E  P GM ARGSYS +++F DDD   +L  
Sbjct: 74  -----YIDYTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128
Query: 259 NYSFDIRKEW 268
            ++  I+K+W
Sbjct: 129 EWNLTIKKDW 138

>pdb|2BXW|A Chain A, Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mutant Length = 141

Iteration: 1
 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
           F LKEG +Y +K +F V+  IVSG+KY    ++ G+                        
Sbjct: 39  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRYGV------------------------ 74
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
                 +D    M+G++ P+ E Y    P E  P GM ARGSYS +++F DDD   +L  
Sbjct: 75  -----YIDYTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 129
Query: 259 NYSFDIRKEW 268
            ++  I+K+W
Sbjct: 130 EWNLTIKKDW 139

>pdb|1RHO|A Chain A, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor Length = 145

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 29/130 (22%)
Query: 139 FTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLL 198
           F LKEG +Y +K +F V+  IVSG KY    ++ G+K  +T Y                 
Sbjct: 44  FVLKEGVEYRIKISFRVNREIVSGXKYIEHTYRKGVKIDKTDYX---------------- 87
Query: 199 TTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEI 258
                        +G++ P+ E Y    P E  P G  ARGSYS +++F DDD   +L  
Sbjct: 88  -------------VGSYGPRAEEYEFLTPVEEAPKGXLARGSYSIKSRFTDDDKTDHLSW 134
Query: 259 NYSFDIRKEW 268
            ++  I+K+W
Sbjct: 135 EWNLTIKKDW 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
1ds6_B	180	RHO GDP-dissociation inhibitor 2; beta sandwhich,	9e-67
1doa_B	219	RHO GDI 1, protein (GDP-dissociation inhibitor 1);	4e-66
1kmt_A	141	RHO GDP-dissociation inhibitor 1; immunoglobulin f	2e-53
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-05

>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A Length = 180

 Score =  204 bits (521), Expect = 9e-67
 Identities = 69/207 (33%), Positives = 100/207 (48%), Gaps = 33/207 (15%)

Query: 65  QLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRND- 123
           +  PQ +LKE  E DKDDESL K+K+ LLG      + +   P V +  L++V       
Sbjct: 4   KPPPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGP 61

Query: 124 IVLAVPED-GKPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYA 182
           I + +  D          LKEGS+Y +K  F+V+ +IVSGLKY    ++ G+K       
Sbjct: 62  ITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVK------- 114

Query: 183 RTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYS 242
                                 VD A  M+G++ P+PE Y    P E  P GM ARG+Y 
Sbjct: 115 ----------------------VDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYH 152

Query: 243 ARTKFLDDDNKCYLEINYSFDIRKEWA 269
            ++ F DDD + +L   ++  I+KEW 
Sbjct: 153 NKSFFTDDDKQDHLSWEWNLSIKKEWG 179

>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E* Length = 219

 Score =  204 bits (519), Expect = 4e-66
 Identities = 70/249 (28%), Positives = 111/249 (44%), Gaps = 34/249 (13%)

Query: 22  GENSNVAVGAAEPANLQEEQRTSRYVTVSETDEEDDDDREQDIQLGPQYTLKEQIEKDKD 81
           G       G      + E++ T+  +      E ++D+   + +   Q +++E  E DKD
Sbjct: 1   GSPGISGGGGGILGLMAEQEPTAEQLA-QIAAENEEDEHSVNYKPPAQKSIQEIQELDKD 59

Query: 82  DESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRND--IVLAVPEDGKPAGNWF 139
           DESLRK+KE LLG V      +   P V +  L++V         +    +        F
Sbjct: 60  DESLRKYKEALLGRV--AVSADPNVPNVVVTRLTLVCSTAPGPLELDLTGDLESFKKQSF 117

Query: 140 TLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLT 199
            LKEG +Y +K +F V+  IVSG+KY    ++ G+K                        
Sbjct: 118 VLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVK------------------------ 153

Query: 200 TSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEIN 259
                +D    M+G++ P+ E Y    P E  P GM ARGSY+ +++F DDD   +L   
Sbjct: 154 -----IDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWE 208

Query: 260 YSFDIRKEW 268
           ++  I+KEW
Sbjct: 209 WNLTIKKEW 217

>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A Length = 141

 Score =  169 bits (429), Expect = 2e-53
 Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 31/166 (18%)

Query: 105 LEPEVRILSLSIVAPGRND-IVLAVPEDGKPAGN-WFTLKEGSKYSLKFTFEVSNNIVSG 162
           + P V +  L++V       + L +  D +      F LKEG +Y +K +F V+  IVSG
Sbjct: 3   MVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSG 62

Query: 163 LKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPY 222
           +KY    ++ G+K                             +D    M+G++ P+   Y
Sbjct: 63  MKYIQHTYRKGVK-----------------------------IDKTDYMVGSYGPRAAAY 93

Query: 223 IHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 268
               P E  P GM ARGSYS +++F DDD   +L   ++  I+K+W
Sbjct: 94  EFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 139

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 42.1 bits (98), Expect = 5e-05
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 13/79 (16%)

Query: 31  AAEPANLQE--EQRTSRYVTVSETDEEDDDDREQDIQLGPQY------TLKEQIEKDKDD 82
             EP ++++  E++  R   + E D       ++  +   +          EQ+EK+K  
Sbjct: 81  TQEPESIRKWREEQRKR---LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK-- 135

Query: 83  ESLRKWKEQLLGSVDFDNI 101
            + R   +      D D I
Sbjct: 136 INNRIADKAFYQQPDADII 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	271
1doa_B	219	RHO GDI 1, protein (GDP-dissociation inhibitor 1);	100.0
1ds6_B	180	RHO GDP-dissociation inhibitor 2; beta sandwhich,	100.0
1kmt_A	141	RHO GDP-dissociation inhibitor 1; immunoglobulin f	100.0
2ag4_A	164	GM2-AP, ganglioside GM2 activator; complex of sing	83.73

>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*

Probab=100.00  E-value=2.9e-78  Score=536.03  Aligned_cols=188  Identities=36%  Similarity=0.636  Sum_probs=177.7

Q ss_pred             CCcCccccccCCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCCCCCCCCCCeEEEEEEEEEeCCCCC-eEEeCCC
Q 024190           52 TDEEDDDDREQDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRND-IVLAVPE  130 (271)
Q Consensus        52 ~~eed~d~~~~~yk~g~~ktl~E~~~lDkdDESLrKwKesLLG~~~~~~i~~~~~p~V~I~sL~i~~~gr~d-i~l~L~~  130 (271)
                      .+||++++.+.+|++|++|||+||++||+||||||||||||||+++  .+.++++|+|+|++|+|+++||++ |+|+|++
T Consensus        30 ~~~~~~~~~~~~yk~~~~ksl~E~~~lD~~DESL~kwKesLlg~~~--~~~d~~~P~V~i~~l~l~~~grp~pi~ldl~~  107 (219)
T 1doa_B           30 AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA--VSADPNVPNVVVTRLTLVCSTAPGPLELDLTG  107 (219)
T ss_dssp             CSSSSSCCCSCCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHHCCCC--CCCCSSCCSBCCCEEEEECSSCSSCCEEECSS
T ss_pred             cccccccccccCcccCCccCHHHHHhhCcchhHHHHHHHHhcCCCC--CcCCCCCCeEEEEEEEEEeCCCCCCEEEeCCC
Confidence            3455666777889999999999999999999999999999999876  577889999999999999999965 9999998


Q ss_pred             CC-CCCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEeccccCccccccccccccceeeeeeeeeeeeeeeecccc
Q 024190          131 DG-KPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAK  209 (271)
Q Consensus       131 d~-~~k~~~FtIKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~  209 (271)
                      +. ++++.+|+|||||+|+|+|+|+|||+|||||||+|+|||+||+                             ||+++
T Consensus       108 ~~~~lk~~~F~IKEGs~Y~lki~FkV~~eIVsGLkY~q~VkR~GI~-----------------------------Vdk~~  158 (219)
T 1doa_B          108 DLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVK-----------------------------IDKTD  158 (219)
T ss_dssp             CCGGGGGCCEEEETTCEEEEEEEECBCSSCEEEEEEEEEEEETTEE-----------------------------EEEEE
T ss_pred             ChhhhcCCCEEecCCCEEEEEEEEEEecceecCcEEEEEEEECCeE-----------------------------ECCcc
Confidence            76 4699999999999999999999999999999999999999999                             99999


Q ss_pred             ceeeeeCCCCCCeeecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEEEEEeeccCC
Q 024190          210 QMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAA  270 (271)
Q Consensus       210 ~mlGsy~P~~E~Y~~~~peEeaPSGmlARGsY~arSkF~DDD~~~~Le~~wsfdI~K~W~~  270 (271)
                      +|||||+|++++|+|+||+|||||||||||+|+|+|+|+|||++|||+|+|+|+|+|+|.+
T Consensus       159 ~MlGSY~P~~e~y~~~~p~EeAPSGmLARG~Y~akSkF~DDD~~~hL~~eWsfeI~KdW~~  219 (219)
T 1doa_B          159 YMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEWKD  219 (219)
T ss_dssp             EEEEEECCCSSCEEEECCCEECCCTTSCCSEEEEEEEEECTTCCCCEEEEEEEEEESSTTC
T ss_pred             eeeeccCCCCCcccccCCCccCCccceeeeeeeeeEEEEeCCCceEEEEEEEEEEecCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999974

>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A

Probab=100.00  E-value=9.3e-78  Score=519.10  Aligned_cols=178  Identities=39%  Similarity=0.655  Sum_probs=170.9

Q ss_pred             CCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCCCCCCCCCCeEEEEEEEEEeCCC-CCeEEeCCCCC-CCCCceE
Q 024190           62 QDIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGR-NDIVLAVPEDG-KPAGNWF  139 (271)
Q Consensus        62 ~~yk~g~~ktl~E~~~lDkdDESLrKwKesLLG~~~~~~i~~~~~p~V~I~sL~i~~~gr-~di~l~L~~d~-~~k~~~F  139 (271)
                      ++|++|+++||+||++||+||||||||||||||+++  .++++++|+|+|.+|+|+++|| +||+++|+.+. ++++.+|
T Consensus         1 ~~yk~~~~ksl~e~~~~D~~DESL~k~K~~Llg~~~--~~~~~~~p~v~i~~l~l~~~~~~~pi~~dl~~~~~~~k~~~f   78 (180)
T 1ds6_B            1 GNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETI   78 (180)
T ss_dssp             CCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHTCCSC--CCCCSSSCSCCEEEEEEECTTCSSCCEEETTSCHHHHHHCEE
T ss_pred             CCcCcCCccCHHHHHhhCcchHHHHHHHHHhcCCCC--CcCCCCCCeEEEEEEEEEeCCCCCCEEEECCCChhhccCCCE
Confidence            369999999999999999999999999999999876  6778899999999999999999 78999999885 3589999


Q ss_pred             EeccCCeEEEEEEEEEeeeeeecceeEEEEEeccccCccccccccccccceeeeeeeeeeeeeeeeccccceeeeeCCCC
Q 024190          140 TLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQP  219 (271)
Q Consensus       140 tIKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~mlGsy~P~~  219 (271)
                      +|||||+|+|+|+|+|||+|||||||+|+|||+||+                             ||++++|||||+|++
T Consensus        79 ~iKEGs~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~-----------------------------Vdk~~~mlGsy~P~~  129 (180)
T 1ds6_B           79 VLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVK-----------------------------VDKATFMVGSYGPRP  129 (180)
T ss_dssp             EEETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEE-----------------------------EEEEEEEEEEECCCS
T ss_pred             EecCCcEEEEEEEEEEecccccCcEEEEEEEECCEE-----------------------------ECCceEeeeccCCCC
Confidence            999999999999999999999999999999999999                             999999999999999


Q ss_pred             CCeeecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEEEEEeeccCC
Q 024190          220 EPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWAA  270 (271)
Q Consensus       220 E~Y~~~~peEeaPSGmlARGsY~arSkF~DDD~~~~Le~~wsfdI~K~W~~  270 (271)
                      ++|+|+||+|||||||||||+|+|+|+|+|||++|||+|+|+|+|+|+|.+
T Consensus       130 e~y~~~~p~eeaPsG~laRG~Y~a~skF~DDD~~~hl~~~wsfeI~KdW~~  180 (180)
T 1ds6_B          130 EEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWGE  180 (180)
T ss_dssp             SCEEEECCCEECCCSTTTCEEEEEEEEEECTTCCCCEEEEEEEEEESSCC-
T ss_pred             CceeecCCCccCCcceeeeeeeeeeEEEEcCCCceEEEEEEEEEEeeCCCC
Confidence            999999999999999999999999999999999999999999999999974

>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A

Probab=100.00  E-value=8.3e-61  Score=399.80  Aligned_cols=138  Identities=34%  Similarity=0.671  Sum_probs=131.4

Q ss_pred             CCCCeEEEEEEEEEeCCCC-CeEEeCCCCC-CCCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEeccccCccccc
Q 024190          104 TLEPEVRILSLSIVAPGRN-DIVLAVPEDG-KPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTY  181 (271)
Q Consensus       104 ~~~p~V~I~sL~i~~~gr~-di~l~L~~d~-~~k~~~FtIKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk~~~~~~  181 (271)
                      +++|+|+|.+|+|+++||+ +|+++|+++. ++++.+|+|||||+|+|+|+|+|||+|||||||+|+|||+||+      
T Consensus         2 p~~p~v~i~~l~l~~~~~~~pi~~~l~~~~~~~k~~~f~iKEG~~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~------   75 (141)
T 1kmt_A            2 AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVK------   75 (141)
T ss_dssp             CBCCSEEEEEEEEECTTSSSCCEEETTSCGGGGGGCCEEEETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEE------
T ss_pred             CCCCeEEEEEEEEEeCCCCCCEEEeCCCChhhhccCceEccCCcEEEEEEEEEEccccccCcEEEEEEEECCEE------
Confidence            4678999999999999976 5999999875 4699999999999999999999999999999999999999999      


Q ss_pred             cccccccceeeeeeeeeeeeeeeeccccceeeeeCCCCCCeeecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEE
Q 024190          182 ARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYS  261 (271)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~mlGsy~P~~E~Y~~~~peEeaPSGmlARGsY~arSkF~DDD~~~~Le~~ws  261 (271)
                                             ||++++|||||+|++|+|+++||+|||||||||||+|+|+|+|+|||++|||+|+|+
T Consensus        76 -----------------------Vdk~~~mlGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~a~s~F~DDD~~~hl~~~w~  132 (141)
T 1kmt_A           76 -----------------------IDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWN  132 (141)
T ss_dssp             -----------------------EEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTCCCSEEEEEE
T ss_pred             -----------------------ECcceEeeeccCCCCCcceecCCCccCCceeEEeeeeeeeEEEEcCCCcEEEEEEEe
Confidence                                   999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeccCC
Q 024190          262 FDIRKEWAA  270 (271)
Q Consensus       262 fdI~K~W~~  270 (271)
                      |+|+|+|.+
T Consensus       133 feI~KdW~~  141 (141)
T 1kmt_A          133 LTIKKDWKD  141 (141)
T ss_dssp             EEEESCC--
T ss_pred             EEEecCCCC
Confidence            999999974

>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A*

Probab=83.73  E-value=6.8  Score=32.28  Aligned_cols=40  Identities=18%  Similarity=0.295  Sum_probs=30.4

Q ss_pred             ecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEEEEEe
Q 024190          224 HEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIR  265 (271)
Q Consensus       224 ~~~peEeaPSGmlARGsY~arSkF~DDD~~~~Le~~wsfdI~  265 (271)
                      +.+|..+.|+ ++..|.|.++..+.| +++.-.=++..|.|.
T Consensus       123 ~~lp~~~lP~-~l~~G~Y~v~~~~~~-~~~~l~Ci~~~~~l~  162 (164)
T 2ag4_A          123 FVVPDLELPS-WLTTGNYRIESVLSS-SGKRLGCIKIAASLK  162 (164)
T ss_dssp             EEECCCCCCT-TCSSEEEEEEEEEEE-TTEEEEEEEEEEEEE
T ss_pred             eecCcccccC-ccCCceEEEEEEEec-CCCEEEEEEEEEEEE
Confidence            6677778888 888999999999987 555555566666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	271
d1ds6b_	179	b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, Rh	3e-78
d1kmta_	138	b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, Rh	2e-59

>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]} Length = 179

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  232 bits (594), Expect = 3e-78
 Identities = 70/205 (34%), Positives = 101/205 (49%), Gaps = 33/205 (16%)

Query: 67  GPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRND-IV 125
            PQ +LKE  E DKDDESL K+K+ LLG  D   + +   P V +  L++V       I 
Sbjct: 6   PPQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPGPIT 63

Query: 126 LAVPEDGKPA-GNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYART 184
           + +  D +        LKEGS+Y +K  F+V+ +IVSGLKY    ++ G+K         
Sbjct: 64  MDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVK--------- 114

Query: 185 HANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSAR 244
                               VD A  M+G++ P+PE Y    P E  P GM ARG+Y  +
Sbjct: 115 --------------------VDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK 154

Query: 245 TKFLDDDNKCYLEINYSFDIRKEWA 269
           + F DDD + +L   ++  I+KEW 
Sbjct: 155 SFFTDDDKQDHLSWEWNLSIKKEWG 179

>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  183 bits (466), Expect = 2e-59
 Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 31/167 (18%)

Query: 104 TLEPEVRILSLSIVAPGRND-IVLAVPED-GKPAGNWFTLKEGSKYSLKFTFEVSNNIVS 161
            + P V +  L++V       + L +  D        F LKEG +Y +K +F V+  IVS
Sbjct: 1   AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVS 60

Query: 162 GLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEP 221
           G+KY    ++ G+K                             +D    M+G++ P+   
Sbjct: 61  GMKYIQHTYRKGVK-----------------------------IDKTDYMVGSYGPRAAA 91

Query: 222 YIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEW 268
           Y    P E  P GM ARGSYS +++F DDD   +L   ++  I+K+W
Sbjct: 92  YEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	271
d1ds6b_	179	Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H	100.0
d1kmta_	138	Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H	100.0
d2ag4a1	163	Ganglioside M2 (gm2) activator {Human (Homo sapien	82.96
d1nepa_	130	Epididymal secretory protein E1 (Niemann-Pick C2 p	81.98

>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-77  Score=511.68  Aligned_cols=176  Identities=39%  Similarity=0.664  Sum_probs=169.4

Q ss_pred             CccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCCCCCCCCCCeEEEEEEEEEeCCCCC-eEEeCCCCC-CCCCceEE
Q 024190           63 DIQLGPQYTLKEQIEKDKDDESLRKWKEQLLGSVDFDNIGETLEPEVRILSLSIVAPGRND-IVLAVPEDG-KPAGNWFT  140 (271)
Q Consensus        63 ~yk~g~~ktl~E~~~lDkdDESLrKwKesLLG~~~~~~i~~~~~p~V~I~sL~i~~~gr~d-i~l~L~~d~-~~k~~~Ft  140 (271)
                      +|++||++||+||+++||||||||||||||||..+  .++++++|+|+|++|+|+++++|+ |+++|+++. .+++.+|+
T Consensus         2 nyk~~~~ksl~E~~~~D~~DESL~kwKe~Llg~~~--~~~~~~~p~V~i~~l~l~~~~~p~~i~~dl~~~~~~lk~~~f~   79 (179)
T d1ds6b_           2 NYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIV   79 (179)
T ss_dssp             CCCCCCCCCHHHHHHTTTTCHHHHHHHHHHTCCSC--CCCCSSSCSCCEEEEEEECTTCSSCCEEETTSCHHHHHHCEEE
T ss_pred             CcCCCCccCHHHHHhcCcChhHHHHHHHHhcCCCc--ccCCCCCCcEEEEEeEEEcCCCCCCeEecCCCccccccCCCEE
Confidence            79999999999999999999999999999999665  677899999999999999999985 999999775 46889999


Q ss_pred             eccCCeEEEEEEEEEeeeeeecceeEEEEEeccccCccccccccccccceeeeeeeeeeeeeeeeccccceeeeeCCCCC
Q 024190          141 LKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPE  220 (271)
Q Consensus       141 IKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~mlGsy~P~~E  220 (271)
                      |||||+|+|+|+|+|+|+||+||||+|+|||+||+                             ||++++|||||+|++|
T Consensus        80 IKEGs~Y~i~i~F~V~~eivsGLkY~q~vkr~Gi~-----------------------------Vdk~~~mlGsy~P~~e  130 (179)
T d1ds6b_          80 LKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVK-----------------------------VDKATFMVGSYGPRPE  130 (179)
T ss_dssp             EETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEE-----------------------------EEEEEEEEEEECCCSS
T ss_pred             ecCCCEEEEEEEEEEecccccCcEEEEEEEECCEE-----------------------------EcceeEeeeccCCCCC
Confidence            99999999999999999999999999999999999                             9999999999999999


Q ss_pred             CeeecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEEEEEeeccC
Q 024190          221 PYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWA  269 (271)
Q Consensus       221 ~Y~~~~peEeaPSGmlARGsY~arSkF~DDD~~~~Le~~wsfdI~K~W~  269 (271)
                      +|+|+||+|||||||||||+|+|+|+|+|||++|||+|+|+|+|+|+|.
T Consensus       131 ~y~~~~p~eeaPsG~laRG~Y~a~s~F~DDD~~~~l~~~w~feI~KdW~  179 (179)
T d1ds6b_         131 EYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWG  179 (179)
T ss_dssp             CEEEECCCEECCCSTTTCEEEEEEEEEECTTCCCCEEEEEEEEEESSCC
T ss_pred             ceeEeCCCccCCceeEEeecceEEEEEEcCCCcEEEEEEEEEEEecCcC
Confidence            9999999999999999999999999999999999999999999999995

>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-59  Score=385.96  Aligned_cols=135  Identities=35%  Similarity=0.688  Sum_probs=131.5

Q ss_pred             CCCeEEEEEEEEEeCCCCC-eEEeCCCCC-CCCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEeccccCcccccc
Q 024190          105 LEPEVRILSLSIVAPGRND-IVLAVPEDG-KPAGNWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYA  182 (271)
Q Consensus       105 ~~p~V~I~sL~i~~~gr~d-i~l~L~~d~-~~k~~~FtIKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk~~~~~~~  182 (271)
                      ..|+|+|++|+|+|++||+ |.|+|+++. ++++.+|+|||||+|+|+|+|+|||+||+||||+|+|||+||+       
T Consensus         2 ~~P~V~v~~l~l~~~~~P~~i~ldl~~~l~~lk~~~f~IKEGs~Y~i~i~F~V~~eivsGLky~q~v~r~Gi~-------   74 (138)
T d1kmta_           2 MVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVK-------   74 (138)
T ss_dssp             BCCSEEEEEEEEECTTSSSCCEEETTSCGGGGGGCCEEEETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEE-------
T ss_pred             CCCceEEEEEEEEcCCCCCCEEEcCCCchhHhcCCCEEecCCCEEEEEEEEEEccccccCcEEEEEEEECCEE-------
Confidence            4699999999999999985 999999886 5799999999999999999999999999999999999999999       


Q ss_pred             ccccccceeeeeeeeeeeeeeeeccccceeeeeCCCCCCeeecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEEE
Q 024190          183 RTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFSPQPEPYIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSF  262 (271)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~Vdk~~~mlGsy~P~~E~Y~~~~peEeaPSGmlARGsY~arSkF~DDD~~~~Le~~wsf  262 (271)
                                            ||++++|||||+|++|+|+++||+|||||||||||+|+|+|+|+|||+++||+|+|+|
T Consensus        75 ----------------------Vdk~~~mvGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~s~f~Ddd~~~~l~~~w~f  132 (138)
T d1kmta_          75 ----------------------IDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNL  132 (138)
T ss_dssp             ----------------------EEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTCCCSEEEEEEE
T ss_pred             ----------------------EcceeEeeeccCCCCCcEEEeCCCccCCceEEEeeeeeEEEEEEcCCCcEEEEEEEEE
Confidence                                  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecc
Q 024190          263 DIRKEW  268 (271)
Q Consensus       263 dI~K~W  268 (271)
                      +|+|||
T Consensus       133 eI~KdW  138 (138)
T d1kmta_         133 TIKKDW  138 (138)
T ss_dssp             EEESCC
T ss_pred             EEecCC
Confidence            999999

>d2ag4a1 b.95.1.1 (A:2-164) Ganglioside M2 (gm2) activator {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Ganglioside M2 (gm2) activator
superfamily: Ganglioside M2 (gm2) activator
family: Ganglioside M2 (gm2) activator
domain: Ganglioside M2 (gm2) activator
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.96  E-value=4.2  Score=32.05  Aligned_cols=37  Identities=19%  Similarity=0.345  Sum_probs=26.3

Q ss_pred             CCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEEEEEe
Q 024190          227 PEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIR  265 (271)
Q Consensus       227 peEeaPSGmlARGsY~arSkF~DDD~~~~Le~~wsfdI~  265 (271)
                      |+=+-|+ ++..|.|.++..+ +++|+...=++-+|.|+
T Consensus       125 p~v~LP~-~l~~G~Y~v~~~~-~~~g~~l~Ci~~~~slk  161 (163)
T d2ag4a1         125 PDLELPS-WLTTGNYRIESVL-SSSGKRLGCIKIAASLK  161 (163)
T ss_dssp             CCCCCCT-TCSSEEEEEEEEE-EETTEEEEEEEEEEEEE
T ss_pred             ccccccC-ccCCceEEEEEEE-eCCCCEEEEEEEEEEEE
Confidence            3335676 7899999999997 55666655566666664

>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick C2 protein) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: ML domain
domain: Epididymal secretory protein E1 (Niemann-Pick C2 protein)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.98  E-value=4.8  Score=29.72  Aligned_cols=99  Identities=17%  Similarity=0.240  Sum_probs=61.6

Q ss_pred             ceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEeccccCccccccccccccceeeeeeeeeeeeeeeeccccceeeeeC
Q 024190          137 NWFTLKEGSKYSLKFTFEVSNNIVSGLKYTNTVWKAGIKGKQTTYARTHANFLNVIHSYVLLTTSFISVDSAKQMLGTFS  216 (271)
Q Consensus       137 ~~FtIKEGs~Y~lki~F~V~~~IVsGLkY~q~V~K~GIk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdk~~~mlGsy~  216 (271)
                      .+=.|+-|...++.|.|....++ .+|+-.=.++=.||..   ||                     .-.+...-.-|..=
T Consensus        26 ~PC~l~rG~~~~i~i~f~~~~~~-~~~~~~v~~~~~gi~i---p~---------------------p~~~~d~C~~g~~C   80 (130)
T d1nepa_          26 QPCKLHRGQSYSVNVTFTSNTQS-QSSKAVVHGIVMGIPV---PF---------------------PIPESDGCKSGIRC   80 (130)
T ss_dssp             SSEEEETTCEEEEEEEEEESSCB-SCCEEEEEEEETTEEE---EC---------------------CCSCCBGGGTTCCS
T ss_pred             CCCEeeCCCEEEEEEEEEcCccc-ceEEEEEEEEECCEEe---cc---------------------cCCCCcccccCCcC
Confidence            46779999999999999998875 5677666666677761   11                     11232222234444


Q ss_pred             CCC--CC--eeecCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEEEEE
Q 024190          217 PQP--EP--YIHEMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDI  264 (271)
Q Consensus       217 P~~--E~--Y~~~~peEeaPSGmlARGsY~arSkF~DDD~~~~Le~~wsfdI  264 (271)
                      |-.  +.  |.+.+|-   |+ ++-+|+|+++-+..|++++...=|....+|
T Consensus        81 Pl~~G~~~~y~~~~~I---~~-~~P~~~~~v~~~l~d~~~~~i~Cf~v~~~I  128 (130)
T d1nepa_          81 PIEKDKTYNYVNKLPV---KN-EYPSIKVVVEWELTDDKNQRFFCWQIPIEV  128 (130)
T ss_dssp             SBCTTCEEEEEEEEEC---CT-TSCSSEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred             CccCCceEEEEEEEEc---ch-hhccEEEEEEEEEEcCCCCEEEEEEEeeEE
Confidence            432  23  5555542   11 344578999999999998755444544444