Citrus Sinensis ID: 024232

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Protein Sequence
MRMNPPADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTERVMYGRSHRRRD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccEEEHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHEEEEEEEEccccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHccHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHEEEEEEHHHHHHEHEEEEHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcEEEEEccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mrmnppadaaetspllahslpdhlirsrrllrrpppplRGAAARLLRRASGrrlmlrepsvRVRETAAEQLEERQsywaysrpiIVLDVLWNLVFVIVAFAVLGvsinekpevplRLRIVGYALQCLFHVFCVslefkrrrrgegvvfgdsvsgsssttvtgdeeerfhgendssVAKNLESANTFLSFLWWIVGFYWITAsgetliscspqLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTERvmygrshrrrd
Flexible Loop (DISEMBL)
mrmnppadaaetspllahSLPDHLIrsrrllrrpppplrgAAARLlrrasgrrlmlrepsvrvrETAAEQLeerqsywaysRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGegvvfgdsvsgsssttvtgdeeerfhgendssVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYAltervmygrshrrrd
Low Complexity Region (SEG)
MRMNPPADAAETSPLLAHSLPDHLIrsrrllrrpppplrgaaarllrrasgrrlmlrEPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRgegvvfgdsvsgsssttvtgdeeeRFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTERVMYGRSHRRRD
Disordered region (IsUnstruct)
**************************************************************************QSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVF**********************************ANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTERVMY********
Disordered Region (DISOPRED)
******************************************************************************AYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKR**************************************KNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTERV**********
Disordered Region (DISEMBL)
***********TSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFG**************************VAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTERVMY********
Disordered Region (DISPRO)
*************************************************************************RQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRG****************************NDSSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTERVMYGR******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRMNPPADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTERVMYGRSHRRRD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	270	2.2.26 [Sep-21-2011]
Q93Z92	390	E3 ubiquitin-protein liga	no	no	0.896	0.620	0.527	2e-59
Q8LDB8	381	E3 ubiquitin-protein liga	no	no	0.803	0.569	0.540	1e-52
Q9LN71	408	E3 ubiquitin-protein liga	no	no	0.844	0.558	0.496	1e-51
Q8GUU2	359	E3 ubiquitin protein liga	no	no	0.785	0.590	0.439	8e-47

>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1

 Score =  229 bits (583), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 136/258 (52%), Positives = 174/258 (67%), Gaps = 16/258 (6%)

Query: 6   PADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRE 65
           P     T  +   S P H    R+ LR         AAR LR A  RR+M REPS+ VRE
Sbjct: 40  PPTVTRTISVDEESNPIHRSARRQGLRE--------AARFLRHAGSRRMM-REPSMLVRE 90

Query: 66  TAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQ 125
           TAAEQLEERQS WAYS+P++ LD+LWNL FV +  AVL +S +EKP +PLR+ +VGY +Q
Sbjct: 91  TAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQ 150

Query: 126 CLFHVFCVSLEFKRRRRG----EGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLE 181
           C  H+ CV +E++RRRR     +G   G + S S         E+R  GE  S+ AK+LE
Sbjct: 151 CWLHMACVCVEYRRRRRRRHPEDGGGSGLTNSSSQQYVSLAQLEDR--GET-SNPAKHLE 207

Query: 182 SANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIA 241
           SANT  SF+WWI+GFYW++A G+TL S SPQLYWLC+ FL FDV FV+ CV +AC+IG+A
Sbjct: 208 SANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALACVIGLA 267

Query: 242 VCCCLPCILGILYALTER 259
           VCCCLPCI+ ILYA+ ++
Sbjct: 268 VCCCLPCIIAILYAVADQ 285

Mediates E2-dependent protein ubiquitination in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2

 Score =  206 bits (524), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/235 (54%), Positives = 167/235 (71%), Gaps = 18/235 (7%)

Query: 42  AARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFA 101
           AARLLR AS  R+M+REPS+ VRE AAEQLEERQS WAYS+P++VLD +WNL FV+VA A
Sbjct: 32  AARLLRHASSGRMMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATA 91

Query: 102 VLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVT 161
           VL +S +E P +PLR+ I+GY LQC+ H+ CV +E++RR            S SSS++ +
Sbjct: 92  VLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSS 151

Query: 162 G-DEEE----------------RFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGE 204
             DEEE                +   EN+S  AK+LESANT +SF+WW++GFYW+++ G+
Sbjct: 152 SMDEEEGLGLSRNSDERYLELGQLENENNS-FAKHLESANTMISFIWWVIGFYWVSSGGQ 210

Query: 205 TLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTER 259
            L   SPQLYWLC+ FL FDV FV+ CV +AC+IGIAVCCCLPCI+ +LYA+ E+
Sbjct: 211 ELAQGSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAEQ 265

Mediates E2-dependent protein ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1

 Score =  203 bits (517), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/252 (49%), Positives = 163/252 (64%), Gaps = 24/252 (9%)

Query: 28  RRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVL 87
           RR +RR    LR  AAR L RAS  R+M REPS+ VRE AAEQLEERQS WAYS+P++VL
Sbjct: 48  RRSVRRQG--LR-EAARFLSRASSGRVM-REPSMLVREAAAEQLEERQSDWAYSKPVVVL 103

Query: 88  DVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVV 147
           D++WNL FV VA A+L +S  E P +PLR+ ++GYALQC+ H+ CV +E++RR R     
Sbjct: 104 DIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRRRNRRRTNR 163

Query: 148 --------------------FGDSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFL 187
                                 +   GS   +   D          SSVAK+LESANT  
Sbjct: 164 TTTTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVAKHLESANTMF 223

Query: 188 SFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLP 247
           SF+WWI+GFYW++A G+ L   SP++YWL + FL FDV FV+ CV +AC+IGIAVCCCLP
Sbjct: 224 SFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALACVIGIAVCCCLP 283

Query: 248 CILGILYALTER 259
           CI+ +LYA+ ++
Sbjct: 284 CIIAVLYAVADQ 295

Mediates E2-dependent protein ubiquitination in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1 PE=2 SV=1

 Score =  187 bits (474), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 95/216 (43%), Positives = 128/216 (59%), Gaps = 4/216 (1%)

Query: 41  AAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAF 100
           A A LL R +G R     PS+ VRETAA  LEER+  W YS+P++  D+LWN   V+ + 
Sbjct: 38  ALAVLLGRITGHR----APSMLVRETAARALEERRIDWGYSKPVVAADILWNAALVLASA 93

Query: 101 AVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTV 160
            +L  ++ E+P  P+R+ I  Y LQCLFHV  V  E+ RR         +S         
Sbjct: 94  VMLVGTVEERPNEPIRVWICVYGLQCLFHVVLVWSEYWRRNSTRRARDLESYDHEDYNIE 153

Query: 161 TGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTF 220
              E++        S  K  ES NT +SF+WWI+GFYW+   G+ L+  +P LYWL V F
Sbjct: 154 YDYEQDSDDNSTTYSFVKRCESINTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIF 213

Query: 221 LAFDVVFVMICVGVACLIGIAVCCCLPCILGILYAL 256
           LA DV F + CV +ACL+GIA+CCCLPCI+ +LYA+
Sbjct: 214 LAIDVFFAVFCVVLACLVGIALCCCLPCIIALLYAV 249

Probable E3 ubiquitin-protein ligase required for embryo development.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
449432181	385	PREDICTED: E3 ubiquitin-protein ligase A	0.937	0.657	0.598	2e-87
255541482	375	cleavage and polyadenylation specificity	0.948	0.682	0.638	2e-81
297817430	377	hypothetical protein ARALYDRAFT_486593 [	0.918	0.657	0.586	3e-80
18411876	379	RING/U-box domain-containing protein [Ar	0.918	0.654	0.581	2e-79
6850885	362	putative protein [Arabidopsis thaliana]	0.825	0.616	0.634	2e-78
301133592	363	C3HC4 type zinc finger protein [Brassica	0.870	0.647	0.584	6e-74
224063987	378	predicted protein [Populus trichocarpa]	0.925	0.661	0.597	2e-70
356530111	369	PREDICTED: E3 ubiquitin-protein ligase A	0.851	0.623	0.584	1e-69
297824629	381	hypothetical protein ARALYDRAFT_322232 [	0.859	0.608	0.594	2e-69
356568312	375	PREDICTED: E3 ubiquitin-protein ligase A	0.859	0.618	0.585	3e-69

>gi|449432181|ref|XP_004133878.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Cucumis sativus] gi|449480146|ref|XP_004155812.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Cucumis sativus]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 158/264 (59%), Positives = 202/264 (76%), Gaps = 11/264 (4%)

Query: 6   PADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRE 65
           P  A + SPLL HS+ + L RSR  +RR P PLRGA  RLLRRASGR++MLREPSVRVRE
Sbjct: 11  PFRAVDNSPLLGHSVTNGLFRSRGFIRRSPQPLRGAV-RLLRRASGRQMMLREPSVRVRE 69

Query: 66  TAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQ 125
           TAAEQLEERQS WAYS+PII+LD+LWNL FVI++F VLG+S +EKP VPLR  I+GYALQ
Sbjct: 70  TAAEQLEERQSDWAYSKPIILLDLLWNLAFVIISFTVLGLSTSEKPSVPLRFWIIGYALQ 129

Query: 126 CLFHVFCVSLEFKRRRRGEGVV----FGDSVSGSSSTTVTGDE------EERFHGENDSS 175
           C+ H+ CV++E+KRRR            D  SG  S +V+G +      E+  + +  S+
Sbjct: 130 CIIHMSCVAVEYKRRRSTREPTGLDRNSDWTSGEDSNSVSGSDGDDYATEQTVNEDESSN 189

Query: 176 VAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVA 235
           + K++ESANT  SF+WW++GFYW+TA G+ LI  SPQLYWL +TFLAFDVVFV+ICV +A
Sbjct: 190 LVKHIESANTMFSFIWWLLGFYWVTAGGQELIEGSPQLYWLSITFLAFDVVFVLICVAIA 249

Query: 236 CLIGIAVCCCLPCILGILYALTER 259
           CL+G+A+CCCLPCI+ ILYA+T++
Sbjct: 250 CLVGVAICCCLPCIIAILYAVTDQ 273

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541482|ref|XP_002511805.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis] gi|223548985|gb|EEF50474.1| cleavage and polyadenylation specificity factor, putative [Ricinus communis]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 166/260 (63%), Positives = 204/260 (78%), Gaps = 4/260 (1%)

Query: 4   NPPADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRV 63
           +P +D+ + SPLL HS+ DHL+RSRR+LRR PPP RGAAARLLRRAS RR+MLREPSVRV
Sbjct: 3   SPQSDSVDMSPLLTHSIADHLLRSRRILRRQPPPFRGAAARLLRRASSRRMMLREPSVRV 62

Query: 64  RETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYA 123
           RE AAEQLEERQ+ WAYS+PII LDVLWNL FV +   VLG+S+ E+P++PLR+ I+GY+
Sbjct: 63  RENAAEQLEERQTDWAYSKPIIFLDVLWNLAFVGIGVVVLGLSVKEEPQLPLRVWIIGYS 122

Query: 124 LQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVTGDE----EERFHGENDSSVAKN 179
           LQCLFH+ CV  E+KRR  G       S S S S +  GD      E+   + D+ V K 
Sbjct: 123 LQCLFHIGCVIFEYKRRLFGTSARLEASDSTSVSESDGGDSVDDGVEQRGNDGDTCVVKQ 182

Query: 180 LESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIG 239
           LESANT  SF+WWIVGFYW+TA G+ L + SPQLYWLC+TFLAFDV+FV+IC+ VACLIG
Sbjct: 183 LESANTMFSFIWWIVGFYWVTAGGQNLTNDSPQLYWLCITFLAFDVIFVIICIAVACLIG 242

Query: 240 IAVCCCLPCILGILYALTER 259
           +A+CCCLPCI+GILYA+T+R
Sbjct: 243 LAICCCLPCIIGILYAMTDR 262

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817430|ref|XP_002876598.1| hypothetical protein ARALYDRAFT_486593 [Arabidopsis lyrata subsp. lyrata] gi|297322436|gb|EFH52857.1| hypothetical protein ARALYDRAFT_486593 [Arabidopsis lyrata subsp. lyrata]

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 153/261 (58%), Positives = 184/261 (70%), Gaps = 13/261 (4%)

Query: 4   NPPADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRV 63
           +P  D  + SPLL  +  +    S+        PLRGAA+RLLRRAS RR+MLREPSVRV
Sbjct: 12  SPATDTMDVSPLLGRNRRNRPRSSQ--------PLRGAASRLLRRASNRRMMLREPSVRV 63

Query: 64  RETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYA 123
           RE AAEQLEERQS WAYS+PIIVLD+LWN VFVIV+ A+LG S  E P+VPLRL I+GY 
Sbjct: 64  REVAAEQLEERQSQWAYSKPIIVLDILWNFVFVIVSIAILGFSSEEDPDVPLRLWIIGYN 123

Query: 124 LQCLFHVFCVSLEFKRRRRGEGVVFGDSVSGSSSTTVTGDEEERF-----HGENDSSVAK 178
            QCL HV CV  E+KRRR       G+  S   S + + DE + +       ++ +S  K
Sbjct: 124 FQCLLHVGCVIAEYKRRREANSPPSGEDSSNHESLSGSDDESDGYSINDTDDDHGTSFTK 183

Query: 179 NLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLI 238
           +LESANT  SF+WWI+GFYW+TA  E L   SPQLYWLCV FLAFDV+FV+ICV VA LI
Sbjct: 184 HLESANTMFSFVWWIIGFYWVTADTEALAQSSPQLYWLCVAFLAFDVMFVVICVAVASLI 243

Query: 239 GIAVCCCLPCILGILYALTER 259
           GIAVCCCLPCI+ ILYAL ++
Sbjct: 244 GIAVCCCLPCIIAILYALADQ 264

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411876|ref|NP_567110.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gi|16648921|gb|AAL24312.1| putative protein [Arabidopsis thaliana] gi|17978715|gb|AAL47351.1| putative protein [Arabidopsis thaliana] gi|332646647|gb|AEE80168.1| RING/U-box domain-containing protein [Arabidopsis thaliana]

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 153/263 (58%), Positives = 186/263 (70%), Gaps = 15/263 (5%)

Query: 4   NPPADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRV 63
           +P  D  + SPLL  +  +    S+        P+RGAA+RLLRRAS RR+MLREPSVRV
Sbjct: 12  SPTTDTMDASPLLGRNRRNRPRSSQ--------PIRGAASRLLRRASNRRMMLREPSVRV 63

Query: 64  RETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYA 123
           RE AAEQLEERQS WAYS+PIIVLD+LWN +FVIV+ A+LG S +E P+VPLRL I+GY 
Sbjct: 64  REVAAEQLEERQSQWAYSKPIIVLDILWNFLFVIVSIAILGFSSDEDPDVPLRLWIIGYN 123

Query: 124 LQCLFHVFCVSLEFKRRR-------RGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSV 176
           +QCLFHV CV  E+KRRR        GE     +S+SGS   +           ++ +S 
Sbjct: 124 VQCLFHVGCVIAEYKRRRVANSPPPSGEDSSNHESLSGSEDESDGYSINNTDDDDHGTSF 183

Query: 177 AKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVAC 236
            K+LESANT  SF+WWI+GFYW+TA  E L   SPQLYWLCV FLAFDV+FV+ICV VA 
Sbjct: 184 TKHLESANTMFSFVWWIIGFYWVTADTEALAQSSPQLYWLCVAFLAFDVMFVVICVAVAS 243

Query: 237 LIGIAVCCCLPCILGILYALTER 259
           LIGIAVCCCLPCI+ ILYAL ++
Sbjct: 244 LIGIAVCCCLPCIIAILYALADQ 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6850885|emb|CAB71048.1| putative protein [Arabidopsis thaliana]

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 146/230 (63%), Positives = 174/230 (75%), Gaps = 7/230 (3%)

Query: 37  PLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFV 96
           P+RGAA+RLLRRAS RR+MLREPSVRVRE AAEQLEERQS WAYS+PIIVLD+LWN +FV
Sbjct: 20  PIRGAASRLLRRASNRRMMLREPSVRVREVAAEQLEERQSQWAYSKPIIVLDILWNFLFV 79

Query: 97  IVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRR-------RGEGVVFG 149
           IV+ A+LG S +E P+VPLRL I+GY +QCLFHV CV  E+KRRR        GE     
Sbjct: 80  IVSIAILGFSSDEDPDVPLRLWIIGYNVQCLFHVGCVIAEYKRRRVANSPPPSGEDSSNH 139

Query: 150 DSVSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGETLISC 209
           +S+SGS   +           ++ +S  K+LESANT  SF+WWI+GFYW+TA  E L   
Sbjct: 140 ESLSGSEDESDGYSINNTDDDDHGTSFTKHLESANTMFSFVWWIIGFYWVTADTEALAQS 199

Query: 210 SPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTER 259
           SPQLYWLCV FLAFDV+FV+ICV VA LIGIAVCCCLPCI+ ILYAL ++
Sbjct: 200 SPQLYWLCVAFLAFDVMFVVICVAVASLIGIAVCCCLPCIIAILYALADQ 249

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301133592|gb|ADK63418.1| C3HC4 type zinc finger protein [Brassica rapa]

 Score =  283 bits (724), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 149/255 (58%), Positives = 174/255 (68%), Gaps = 20/255 (7%)

Query: 6   PADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRE 65
           PA    +SPLL  +            RRP  PLRGAA+RLLRRAS R +MLRE SVRVRE
Sbjct: 15  PATDDASSPLLNRN------------RRPSQPLRGAASRLLRRASSRGMMLRESSVRVRE 62

Query: 66  TAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQ 125
           TAAEQ+EERQS WAYS+P+IVLDVLWNL FV V   V   S  E P  PLR  IVGY LQ
Sbjct: 63  TAAEQIEERQSEWAYSKPVIVLDVLWNLAFVFVTVGVSWFSSEEDPRAPLRFWIVGYNLQ 122

Query: 126 CLFHVFCVSLEFKRRRRGEGVVFG-DSVSGSSSTTVTGDEEERFHGENDSSVAKNLESAN 184
           CL H+ CV  E++RR     +  G  SV GSS     G E      E+ +SVAK++ES N
Sbjct: 123 CLIHIACVIAEYRRRESNRDLDSGLSSVQGSSDG--YGAE-----IESGNSVAKHIESTN 175

Query: 185 TFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCC 244
              SF+WW++GFYW+TA  E L   SPQLYWLCV FLAFDV+FV++CV VACLIGIAVCC
Sbjct: 176 AIFSFVWWVIGFYWVTADAEELAQSSPQLYWLCVAFLAFDVIFVVLCVAVACLIGIAVCC 235

Query: 245 CLPCILGILYALTER 259
           CLPCI+ +LYAL +R
Sbjct: 236 CLPCIIAVLYALADR 250

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063987|ref|XP_002301335.1| predicted protein [Populus trichocarpa] gi|222843061|gb|EEE80608.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 156/261 (59%), Positives = 196/261 (75%), Gaps = 11/261 (4%)

Query: 4   NPPADAAETSPLLAHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRV 63
           +P +DA ++SPLLAHS+ +HL+RSRRLLRRPP  LRGAAAR+LRRAS RR+MLREPSVRV
Sbjct: 11  SPQSDAIDSSPLLAHSIANHLLRSRRLLRRPPQ-LRGAAARILRRASSRRMMLREPSVRV 69

Query: 64  RETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYA 123
           RE AAEQLEERQS W YS+P++V+DVLW+L  VI+A  VLG+S+ EKP VP R  IV Y 
Sbjct: 70  RENAAEQLEERQSDWGYSKPVVVIDVLWSLAIVIIAVGVLGLSLEEKPRVPFRAWIVAYI 129

Query: 124 LQCLFHVFCVSLEFKRRR----RGEGVVFGDSVSGSSSTTVTGDEEERFHGENDSSVAKN 179
           L C  HV CV +E+++RR    R  G++  D  SG S    T   E    G+N +SVAK 
Sbjct: 130 LLCSCHVVCVVVEYRKRRNLGLRESGILSSD--SGDSLDFSTQQSEN--DGQN-TSVAKR 184

Query: 180 LESANTFLSFLWWIVGFYWITASG-ETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLI 238
           +ESA T  S +WWI+GFYW+T +G + +   SPQLYWLC+ FLA D +FV+IC+ VACLI
Sbjct: 185 VESAMTTFSIIWWIIGFYWVTTAGRQNVAKDSPQLYWLCIAFLAADTLFVIICIAVACLI 244

Query: 239 GIAVCCCLPCILGILYALTER 259
           GIAVCC LPCI+GILYA+ ++
Sbjct: 245 GIAVCCFLPCIIGILYAMADQ 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530111|ref|XP_003533627.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Glycine max]

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 142/243 (58%), Positives = 171/243 (70%), Gaps = 13/243 (5%)

Query: 24  LIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRP 83
           L RSRR   R PP LR  AA   RRASGRR+MLREPSVRVRE AA ++E RQS WAYSRP
Sbjct: 23  LPRSRR---RAPPSLR-TAATFFRRASGRRMMLREPSVRVREAAAAEVEGRQSEWAYSRP 78

Query: 84  IIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRG 143
           ++ LDV WN  F+ +  +VL +S +E P VPLR  IVGY LQ   H  CV  EF RRRR 
Sbjct: 79  VVALDVAWNAAFLAIGASVLALSADEDPCVPLRAWIVGYLLQGALHSLCVVAEFTRRRRT 138

Query: 144 ---EGVVFGDSVSGSSSTTVTGDEE----ERFHGENDSSVAKNLESANTFLSFLWWIVGF 196
               G   G +V  S S+    DEE    E+F   + +S+ K++ESANT LSF+WWIVGF
Sbjct: 139 ATISGTHSGSNVEWSFSSE--SDEEFYPSEQFLEGDGNSITKHIESANTMLSFIWWIVGF 196

Query: 197 YWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYAL 256
           YW+TA G++L   SPQLYWLC+TFL+FDV+ V+ICV VACLIGIAVCCCLPCIL ILY +
Sbjct: 197 YWVTAGGQSLTRDSPQLYWLCITFLSFDVMIVLICVAVACLIGIAVCCCLPCILAILYVV 256

Query: 257 TER 259
            ++
Sbjct: 257 ADQ 259

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824629|ref|XP_002880197.1| hypothetical protein ARALYDRAFT_322232 [Arabidopsis lyrata subsp. lyrata] gi|297326036|gb|EFH56456.1| hypothetical protein ARALYDRAFT_322232 [Arabidopsis lyrata subsp. lyrata]

 Score =  268 bits (686), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 148/249 (59%), Positives = 175/249 (70%), Gaps = 17/249 (6%)

Query: 24  LIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRP 83
           L R+RR L R   PLRGAA+RLLRRAS RR+MLRE SVRVRE AAEQ+EERQS WAYS+P
Sbjct: 24  LNRNRRALSRSSQPLRGAASRLLRRASSRRMMLRESSVRVRENAAEQIEERQSEWAYSKP 83

Query: 84  IIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRG 143
           +IVLDVLWNL FV V  A+LG S +E P VPLR  I+GY LQCLFHV CV  E++RR R 
Sbjct: 84  VIVLDVLWNLAFVFVTIAILGFSSDENPHVPLRFWIIGYNLQCLFHVGCVIAEYRRRHRR 143

Query: 144 EGVVFGDS-------------VSGSSSTTVTGDEEERFHGENDSSVAKNLESANTFLSFL 190
           +   F +                 S    +  D +     E  +S+AK+LESAN   SF+
Sbjct: 144 QSDDFPNEDSVLGSSSSHGSSEDESDDYAIVDDSQ----IEPGTSLAKHLESANAIFSFV 199

Query: 191 WWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCIL 250
           WWI+GFYW+TA  E L   SPQLYWLCV FLAFDV+FV++CV VACLIGIAVCCCLPCI+
Sbjct: 200 WWIIGFYWVTADSEELSQSSPQLYWLCVAFLAFDVIFVVLCVAVACLIGIAVCCCLPCII 259

Query: 251 GILYALTER 259
            +LYAL +R
Sbjct: 260 AVLYALADR 268

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568312|ref|XP_003552356.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like [Glycine max]

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 141/241 (58%), Positives = 171/241 (70%), Gaps = 9/241 (3%)

Query: 26  RSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSVRVRETAAEQLEERQSYWAYSRPII 85
           RSR LLRR PPPL   AA   RRASGRR+MLREPSVR+RE AA ++E RQS WAYSRP++
Sbjct: 25  RSRHLLRRAPPPLH-TAATFFRRASGRRMMLREPSVRMREAAAAEVEGRQSEWAYSRPVV 83

Query: 86  VLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRG-- 143
            LDV WN VF+ +  +VL +S +E P VPLR  IVGY LQ   H  CV  EF RRRR   
Sbjct: 84  ALDVAWNAVFLAIGASVLALSTDEDPCVPLRAWIVGYLLQGALHSLCVVAEFTRRRRRRV 143

Query: 144 EGVVFGDSVSGSSSTTVTGDEEERFHG-----END-SSVAKNLESANTFLSFLWWIVGFY 197
            G   G +V G    + + + +E F+      E D +S+ K++E+ NT LSF+WWIVGFY
Sbjct: 144 SGTHPGSNVVGHVQWSFSSESDEEFYPPEQFLEGDGNSITKHIETVNTMLSFIWWIVGFY 203

Query: 198 WITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGILYALT 257
           W+TA G++L   SPQLYWLC+TFLAFDVV V+ICV VACLIGIAVCCCLPCIL ILY + 
Sbjct: 204 WVTAGGQSLTRDSPQLYWLCITFLAFDVVIVLICVSVACLIGIAVCCCLPCILAILYVVA 263

Query: 258 E 258
           +
Sbjct: 264 D 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	270
TAIR|locus:2098916	379	AT3G61180 [Arabidopsis thalian	0.748	0.532	0.593	1.4e-62
TAIR|locus:2139717	390	AT4G11680 [Arabidopsis thalian	0.748	0.517	0.541	3.1e-60
TAIR|locus:2195077	408	AT1G12760 [Arabidopsis thalian	0.318	0.210	0.627	1.8e-58
TAIR|locus:2015248	381	AT1G63170 [Arabidopsis thalian	0.748	0.530	0.513	3.6e-57
TAIR|locus:2200301	343	AT1G68070 [Arabidopsis thalian	0.707	0.556	0.482	3.7e-48
TAIR|locus:1005452975	359	RIE1 "RING-finger protein for	0.748	0.562	0.436	1.2e-44
TAIR|locus:2034210	407	AT1G80400 [Arabidopsis thalian	0.211	0.140	0.393	1.3e-09
TAIR|locus:2125652	453	AT4G32600 [Arabidopsis thalian	0.211	0.125	0.393	2.7e-09
TAIR|locus:2037164	227	AT1G44010 "AT1G44010" [Arabido	0.229	0.273	0.313	3.5e-05
TAIR|locus:2133877	335	AT4G26580 [Arabidopsis thalian	0.585	0.471	0.224	6.5e-05

TAIR|locus:2098916 AT3G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 124/209 (59%), Positives = 146/209 (69%)

Query:    58 EPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRL 117
             EPSVRVRE AAEQLEERQS WAYS+PIIVLD+LWN +FVIV+ A+LG S +E P+VPLRL
Sbjct:    58 EPSVRVREVAAEQLEERQSQWAYSKPIIVLDILWNFLFVIVSIAILGFSSDEDPDVPLRL 117

Query:   118 RIVGYALQCLFHVFCVSLEFKRRRRXXX---XXXXXXXXXXXXXXXXXXXXXRFHGEND- 173
              I+GY +QCLFHV CV  E+KRRR                              +  +D 
Sbjct:   118 WIIGYNVQCLFHVGCVIAEYKRRRVANSPPPSGEDSSNHESLSGSEDESDGYSINNTDDD 177

Query:   174 ---SSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMI 230
                +S  K+LESANT  SF+WWI+GFYW+TA  E L   SPQLYWLCV FLAFDV+FV+I
Sbjct:   178 DHGTSFTKHLESANTMFSFVWWIIGFYWVTADTEALAQSSPQLYWLCVAFLAFDVMFVVI 237

Query:   231 CVGVACLIGIAVCCCLPCILGILYALTER 259
             CV VA LIGIAVCCCLPCI+ ILYAL ++
Sbjct:   238 CVAVASLIGIAVCCCLPCIIAILYALADQ 266

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2139717 AT4G11680 [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 110/203 (54%), Positives = 144/203 (70%)

Query:    58 EPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRL 117
             EPS+ VRETAAEQLEERQS WAYS+P++ LD+LWNL FV +  AVL +S +EKP +PLR+
Sbjct:    83 EPSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRV 142

Query:   118 RIVGYALQCLFHVFCVSLEFKRRRRXXXXXXXXXXXXXXXXXXXXXXXXRFHGENDSS-V 176
              +VGY +QC  H+ CV +E++RRRR                        +     ++S  
Sbjct:   143 WVVGYGIQCWLHMACVCVEYRRRRRRRHPEDGGGSGLTNSSSQQYVSLAQLEDRGETSNP 202

Query:   177 AKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVAC 236
             AK+LESANT  SF+WWI+GFYW++A G+TL S SPQLYWLC+ FL FDV FV+ CV +AC
Sbjct:   203 AKHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALAC 262

Query:   237 LIGIAVCCCLPCILGILYALTER 259
             +IG+AVCCCLPCI+ ILYA+ ++
Sbjct:   263 VIGLAVCCCLPCIIAILYAVADQ 285

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2195077 AT1G12760 [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
 Identities = 54/86 (62%), Positives = 71/86 (82%)

Query:   174 SSVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVG 233
             SSVAK+LESANT  SF+WWI+GFYW++A G+ L   SP++YWL + FL FDV FV+ CV 
Sbjct:   210 SSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVA 269

Query:   234 VACLIGIAVCCCLPCILGILYALTER 259
             +AC+IGIAVCCCLPCI+ +LYA+ ++
Sbjct:   270 LACVIGIAVCCCLPCIIAVLYAVADQ 295

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:2015248 AT1G63170 [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 112/218 (51%), Positives = 148/218 (67%)

Query:    58 EPSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRL 117
             EPS+ VRE AAEQLEERQS WAYS+P++VLD +WNL FV+VA AVL +S +E P +PLR+
Sbjct:    48 EPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPLRV 107

Query:   118 RIVGYALQCLFHVFCVSLEFKRR--RRXXXXXXXXXXXXXXXXXX---------XXXXXX 166
              I+GY LQC+ H+ CV +E++RR  RR                                 
Sbjct:   108 WIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEGLGLSRNSDE 167

Query:   167 RFH--G--ENDS-SVAKNLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFL 221
             R+   G  EN++ S AK+LESANT +SF+WW++GFYW+++ G+ L   SPQLYWLC+ FL
Sbjct:   168 RYLELGQLENENNSFAKHLESANTMISFIWWVIGFYWVSSGGQELAQGSPQLYWLCIVFL 227

Query:   222 AFDVVFVMICVGVACLIGIAVCCCLPCILGILYALTER 259
              FDV FV+ CV +AC+IGIAVCCCLPCI+ +LYA+ E+
Sbjct:   228 GFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAEQ 265

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2200301 AT1G68070 [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 95/197 (48%), Positives = 124/197 (62%)

Query:    60 SVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRI 119
             S+ VRETAA++LEER++ W YS+P++ LD+LWN  FV+VA  +L V   EKP VP+R+ I
Sbjct:    44 SMVVRETAAQELEERRADWGYSKPVVALDMLWNTAFVLVAIVMLLVFKEEKPNVPIRIWI 103

Query:   120 VGYALQCLFHVFCVSLEFKRRRRXXXXXXXXXXXXXXXXXXXXXXXXRFHGENDSSVAKN 179
              GYA+QCL HV  V LEF++R                          RF         K 
Sbjct:   104 CGYAIQCLVHVVLVWLEFRKRNARSRPGDLEAAQATNQDSEDEDNDERFLS------TKT 157

Query:   180 LESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIG 239
              ES NT +SF+WWIVGFYW+ + G+ L+  +  LYWL   FLAFDV F + CV +ACLIG
Sbjct:   158 CESMNTIISFVWWIVGFYWLVSGGDILLQNATHLYWLTFVFLAFDVFFAIFCVVLACLIG 217

Query:   240 IAVCCCLPCILGILYAL 256
             IA+CCCLPCI+ +LYA+
Sbjct:   218 IALCCCLPCIIALLYAV 234

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:1005452975 RIE1 "RING-finger protein for embryogenesis" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 89/204 (43%), Positives = 118/204 (57%)

Query:    59 PSVRVRETAAEQLEERQSYWAYSRPIIVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLR 118
             PS+ VRETAA  LEER+  W YS+P++  D+LWN   V+ +  +L  ++ E+P  P+R+ 
Sbjct:    52 PSMLVRETAARALEERRIDWGYSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIRVW 111

Query:   119 IVGYALQCLFHVFCVSLEFKRRRRXXXXXXXXXXXXXXXXXXXXXXXXRFHGENDSSVAK 178
             I  Y LQCLFHV  V  E+ RR                                  S  K
Sbjct:   112 ICVYGLQCLFHVVLVWSEYWRRNSTRRARDLESYDHEDYNIEYDYEQDSDDNSTTYSFVK 171

Query:   179 NLESANTFLSFLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVACLI 238
               ES NT +SF+WWI+GFYW+   G+ L+  +P LYWL V FLA DV F + CV +ACL+
Sbjct:   172 RCESINTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLACLV 231

Query:   239 GIAVCCCLPCILGILYAL--TERV 260
             GIA+CCCLPCI+ +LYA+  TE V
Sbjct:   232 GIALCCCLPCIIALLYAVAGTEGV 255

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

TAIR|locus:2034210 AT1G80400 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
 Identities = 26/66 (39%), Positives = 39/66 (59%)

Query:   190 LWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVAC--LIGIAVCCCLP 247
             +W++VG  WI   G +  S SP+LY LC+ FL F       C+G A   ++   +CCCLP
Sbjct:   236 VWFVVGNVWIFG-GHSSPSDSPKLYRLCIAFLTFS------CIGYAMPFILCATICCCLP 288

Query:   248 CILGIL 253
             C++ +L
Sbjct:   289 CLISVL 294

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2125652 AT4G32600 [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
 Identities = 26/66 (39%), Positives = 38/66 (57%)

Query:   190 LWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVVFVMICVGVAC--LIGIAVCCCLP 247
             +W++VG  WI   G +  + +P LY LC+ FL F       C+G A   ++   +CCCLP
Sbjct:   241 VWFVVGNVWIFG-GHSSAAEAPNLYRLCLVFLTFS------CIGYAMPFILCTTICCCLP 293

Query:   248 CILGIL 253
             CI+ IL
Sbjct:   294 CIISIL 299

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2037164 AT1G44010 "AT1G44010" [Arabidopsis thaliana (taxid:3702)]

 Score = 96 (38.9 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query:   189 FLWWIVGFYWITASGETLISCSPQLYWLCVTFLAFDVV-FV---MICVGVACLIGIAVCC 244
             F+ W+V F W+  S  + +  + Q +WLC+ FLAF  + +V   +IC  + C I + +  
Sbjct:   131 FVGWVVLFLWMYHSSSSSLYDNTQYFWLCMAFLAFTCIRYVPARLICSAI-CFIFVVIIW 189

Query:   245 CLPCILG 251
                 +LG
Sbjct:   190 FCADVLG 196

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2133877 AT4G26580 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 6.5e-05, P = 6.5e-05
 Identities = 38/169 (22%), Positives = 73/169 (43%)

Query:    85 IVLDVLWNLVFVIVAFAVLGVSINEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRRRXX 144
             +V +++  L+ + V  + L +S NE+P  P+RL I GY + CL ++  +   + R++   
Sbjct:    88 MVSELIALLLQITVITSTLALSKNERPVWPMRLWITGYNVGCLLNLMLLYGRY-RQQDTS 146

Query:   145 XXXXXXXXXXXXXXXXXXXXXXRFHGENDSSVAKNLESANTFLSFLWWIVGFYWITASGE 204
                                     H  N     K   S   F + +W+++G  W+  S  
Sbjct:   147 HENAFSFGDIEQQQRSREETTRCSHLMN-----KCRTSLELFFA-IWFVIGNVWVFDSRF 200

Query:   205 TLISCSPQLYWLCVTFLAFDVVFVMICVGVACLIGIAVCCCLPCILGIL 253
                  +P L+ LC++ LA++     +C     L+ + +CC +P +   L
Sbjct:   201 GSFHYAPILHVLCISLLAWNA----LCYSFPFLLFLLLCCVVPLVSSFL 245

GO:0008270 "zinc ion binding" evidence=IEA;ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.5__2585__AT3G61180.1 annotation not avaliable (377 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	270
PF04505	82	Dispanin: Interferon-induced transmembrane protein	87.43

>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression []

Probab=87.43  E-value=0.16  Score=39.51  Aligned_cols=17  Identities=41%  Similarity=1.191  Sum_probs=12.9

Q ss_pred             HHHhhHH-HHHHHHHHhh
Q 024232          241 AVCCCLP-CILGILYALT  257 (270)
Q Consensus       241 alCCCLP-cIIaiLyava  257 (270)
                      .+|||+| -|+++.|+..
T Consensus        26 ~l~Cc~PlGi~Ai~~s~k   43 (82)
T PF04505_consen   26 TLCCCWPLGIVAIVYSSK   43 (82)
T ss_pred             HHHHHhhHHHHHheechh
Confidence            3499999 4778888776

; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	270
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 44/155 (28%)

Query: 6   PADAAETSPLL----AHSLPDHLIRSRRLLRRPPPPLRGAAARLLRRASGRRLMLREPSV 61
           P +   T+P      A S+ D L                      +  +  +L       
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNW----------------KHVNCDKLT------ 356

Query: 62  RVRETAAEQL---EERQSYWAYSR-------PIIVLDVLWN-----LVFVIVAFAVLGVS 106
            + E++   L   E R+ +   S        P I+L ++W       V V+V        
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 107 INEKPEVPLRLRIVGYALQCLFHVFCVSLEFKRRR 141
           + ++P+    + I   ++     V   +     R 
Sbjct: 417 VEKQPK-ESTISI--PSIYLELKVKLENEYALHRS 448

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00