Citrus Sinensis ID: 024255

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

MALSLLPVSSPTFPLHHPPSSLYHHHPHRTKLQALVFRKFSLGKERVRGGFMGKKGGGFLWVSPSSSSSSLSVCWASNGGGGDLGRDNYEEDDEAGDESEADDDGDEYDEEISGSASVLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVSFQRSIRNKN

cccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccEEEEEccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccEEEEEEEccHHHHHHcccccccEEEccHHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHccccccccccEEEEEEEEEcccHHHHHHHHHHHcccccccccccccccEEEEEEEcccccEEEccccHHHHHHHcccc

ccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccEEEEEccccccEEEEEEEccccccccccccccHHHHcccccccccccccccccccccccccccccEEEEEccHEEEEEEcccHHHHHHcccccccEEEccHHHHHHHHHHHcccccHEccccHHHHHHHHHHHHcccccccccccEEEEEEcccccHHHHHHHHHHHcccccccccccccccEEEEEEEcccccHcHcHEHHHccccHHccc

malsllpvssptfplhhppsslyhhhphrtkLQALVFRKFSLgkervrggfmgkkgggflwvspsssssslsvcwasnggggdlgrdnyeeddeagdeseadddgdeydeeisgsasvlperwdvLGLGQAmvdfsgmvdddFLERlglekgtrKLVNHEERGRVLRamdgcsykaaaggslSNSLVALARlggkpiggpalnvamtgsvgsdplggfyrAKLRRANvafcsepikdgttgTVIVLTTPDAQRAMLAYQVSFQRSIRNKN

malsllpvsspTFPLHHPPSSLYHHHPHRTKLQALVFRKFSLGKERVRGGFMGKKGGGFLWVSPSSSSSSLSVCWASNGGGGDLGRDNYEEDDEAGDeseadddgdeyDEEISgsasvlpeRWDVLGLGQAMVDFSGMVDDDFLERLglekgtrklvnheergrVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAfcsepikdgttgTVIVLTTPDAQRAMLAYQVsfqrsirnkn

MALSLLPVSSPTFplhhppsslyhhhphRTKLQALVFRKFSLGKERVRggfmgkkgggfLWVspsssssslsVCWASNGGGGDLGRDNyeeddeagdeseadddgdeydeeISGSASVLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVSFQRSIRNKN

*************************HPHRTKLQALVFRKFSLGKERVRGGFMGKKGGGFLWV**********VCW******************************************VLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVSF********

***SLLPVSSPTFPLHHPPSSLYHHHPHRTKLQALVFRKFSLGKERVR**FMGKKGGGFLWVSPSSSSSSLSV*************************************************WDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVSFQR******

MALSLLPVSSPTFPLHHPPSSLYHHHPHRTKLQALVFRKFSLGKERVRGGFMGKKGGGFLWVS*********VCWASNGGGGDLGRDNY*************************SASVLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVSF********

*****LPVSSPTFPLHHPPSSLYHHHPHRTKLQALVFRKFSLGKERVRGGFMGKKGGGFLWVSPSSSSSSLSVCWASN****************************EY******SASVLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVSFQRS*****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		270	2.2.26 [Sep-21-2011]
Q55480		333	Uncharacterized sugar kin	N/A	no	0.477	0.387	0.330	4e-11

>sp\|Q55480\|YZ37_SYNY3 Uncharacterized sugar kinase slr0537 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0537 PE=3 SV=1	Back alignment and function desciption

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 66/139 (47%), Gaps = 10/139 (7%)

Query: 122 RWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGS 181
           ++DV G+G A+VD    V  + L  LG++KG   LV       ++  +     K ++GGS
Sbjct: 4   KYDVYGMGNALVDMEFEVTPEQLASLGIDKGVMTLVEEARENELIAQLAQQRGKQSSGGS 63

Query: 182 LSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFC--SEPIKDGT 239
            +N+LV+LA+LGG               VG D  G FY   L    +      E   +G 
Sbjct: 64  AANTLVSLAQLGGTGF--------YACKVGKDEAGAFYLQDLNDCGLDTNPHHETAGEGI 115

Query: 240 TGTVIVLTTPDAQRAMLAY 258
           TG  +V  TPDA R M A+
Sbjct: 116 TGKCLVFVTPDADRTMNAF 134

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		270
224126219		465	predicted protein [Populus trichocarpa]	0.792	0.460	0.599	1e-69
255558089		483	Ribokinase, putative [Ricinus communis]	0.688	0.385	0.723	3e-69
225454708		461	PREDICTED: uncharacterized sugar kinase	0.533	0.312	0.888	5e-69
147866320		414	hypothetical protein VITISV_012090 [Viti	0.533	0.347	0.888	9e-69
297737278		366	unnamed protein product [Vitis vinifera]	0.533	0.393	0.888	1e-68
449461231		471	PREDICTED: uncharacterized sugar kinase	0.588	0.337	0.790	2e-66
449532553		260	PREDICTED: uncharacterized protein LOC10	0.588	0.611	0.790	2e-66
356543290		461	PREDICTED: uncharacterized sugar kinase	0.766	0.449	0.635	4e-65
226532948		458	uncharacterized protein LOC100273451 [Ze	0.666	0.393	0.694	3e-64
357474331		464	Carbohydrate kinase-like protein [Medica	0.740	0.431	0.650	2e-63

>gi\|224126219\|ref\|XP_002319785.1\| predicted protein [Populus trichocarpa] gi\|222858161\|gb\|EEE95708.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 154/257 (59%), Positives = 174/257 (67%), Gaps = 43/257 (16%)

Query: 9   SSPTFPLHHPPSSLYHHHPHRTKLQA----LVFRKFSLGKERVRGGFMGKKGGGFLWVSP 64
           SSP F L+  P SL+ H+   T L +    +   K     +  RG F             
Sbjct: 26  SSPIFSLYRNPLSLHAHNTTPTNLSSPYGPIQTSKLDTVAKTSRGSF------------- 72

Query: 65  SSSSSSLSVCWASNGGGGDLGRDNYEEDDEAGDESEADDDGDEYDEEISGSA--SVLPER 122
               SSLS               N E +   G +       D+ +EEI G +  SVLP+R
Sbjct: 73  --RISSLS---------------NIERELGTGSQ-------DDEEEEIEGVSPTSVLPDR 108

Query: 123 WDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSL 182
           WDVLGLGQAMVDFSG VDD+FL+RLGLEKGTRK+VNHEERGRVLRAMDGCSYKAAAGGSL
Sbjct: 109 WDVLGLGQAMVDFSGTVDDEFLKRLGLEKGTRKVVNHEERGRVLRAMDGCSYKAAAGGSL 168

Query: 183 SNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGT 242
           SNSLVALARLG K +GGPALNVAM GSVGSDPLGGFYR+KL+RANV F SEP+KDGTTGT
Sbjct: 169 SNSLVALARLGCKSVGGPALNVAMAGSVGSDPLGGFYRSKLQRANVNFLSEPVKDGTTGT 228

Query: 243 VIVLTTPDAQRAMLAYQ 259
           VIVLTTPDAQR MLA+Q
Sbjct: 229 VIVLTTPDAQRTMLAHQ 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255558089\|ref\|XP_002520073.1\| Ribokinase, putative [Ricinus communis] gi\|223540837\|gb\|EEF42397.1\| Ribokinase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225454708\|ref\|XP_002271653.1\| PREDICTED: uncharacterized sugar kinase slr0537-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147866320\|emb\|CAN82032.1\| hypothetical protein VITISV_012090 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297737278\|emb\|CBI26479.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449461231\|ref\|XP_004148345.1\| PREDICTED: uncharacterized sugar kinase slr0537-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449532553\|ref\|XP_004173245.1\| PREDICTED: uncharacterized protein LOC101230396, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356543290\|ref\|XP_003540095.1\| PREDICTED: uncharacterized sugar kinase slr0537-like [Glycine max]	Back alignment and taxonomy information

>gi\|226532948\|ref\|NP_001141360.1\| uncharacterized protein LOC100273451 [Zea mays] gi\|194704168\|gb\|ACF86168.1\| unknown [Zea mays] gi\|195644036\|gb\|ACG41486.1\| carbohydrate kinase-like protein [Zea mays] gi\|414867871\|tpg\|DAA46428.1\| TPA: carbohydrate kinase-like protein [Zea mays]	Back alignment and taxonomy information

>gi\|357474331\|ref\|XP_003607450.1\| Carbohydrate kinase-like protein [Medicago truncatula] gi\|355508505\|gb\|AES89647.1\| Carbohydrate kinase-like protein [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		270
TAIR\|locus:2137782		471	NARA5 "GENES NECESSARY FOR THE	0.948	0.543	0.511	6.6e-58
TIGR_CMR\|SPO_3582		328	SPO_3582 "kinase, pfkB family"	0.466	0.384	0.328	7.1e-14
ZFIN\|ZDB-GENE-030131-948		345	adkb "adenosine kinase b" [Dan	0.470	0.368	0.283	0.00034

TAIR\|locus:2137782 NARA5 "GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 133/260 (51%), Positives = 153/260 (58%)

Query:     1 MALSLL-PVSSPTFXXXXXXXXXXXXXXXRTKLQALVFRKFSLGKERVRXXXXXXXXXXX 59
             MA SLL P+ +                   + L  L       G  R R           
Sbjct:     1 MAFSLLSPIPTSASLFFTLSAITASNNASSSSLSRLYSLYHPKGTLRTRTATSFFGASGN 60

Query:    60 LWVXXXXXXXXXXVCWASNGGGGDLGRDNXXXXXXXXXXXXXXXXXXXXXXXISGSASVL 119
             L +          VC    G G +L  D+                        + S++  
Sbjct:    61 LRIVSMAENRQL-VCRIGGGAGAEL--DDMDEGEIQRIGNEDEDDDEFIQVHANNSSAAS 117

Query:   120 PERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAG 179
             PERWDVLGLGQAMVDFSG+VDD+FL++LGLEKGTRKL+NHEERG++L+AMDGCSYKAAAG
Sbjct:   118 PERWDVLGLGQAMVDFSGVVDDEFLKKLGLEKGTRKLINHEERGKLLQAMDGCSYKAAAG 177

Query:   180 GSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGT 239
             GSLSN+LVALARLG + I    LNVAM GS+G DPLG FY  KLRRANV F S PIKDGT
Sbjct:   178 GSLSNTLVALARLGSQSICDRPLNVAMAGSIGGDPLGSFYGTKLRRANVNFLSAPIKDGT 237

Query:   240 TGTVIVLTTPDAQRAMLAYQ 259
             TGTVIVLTTPDAQR MLAYQ
Sbjct:   238 TGTVIVLTTPDAQRTMLAYQ 257

GO:0005739 "mitochondrion" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0015979 "photosynthesis" evidence=IMP

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

TIGR_CMR\|SPO_3582 SPO_3582 "kinase, pfkB family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-948 adkb "adenosine kinase b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XIII.2592.1	pfkB-type carbohydrate kinase family protein (EC-2.7.1.20) (370 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		270
PLN02813		426	PLN02813, PLN02813, pfkB-type carbohydrate kinase	5e-95
cd01168		312	cd01168, adenosine_kinase, Adenosine kinase (AK) c	4e-38
COG0524		311	COG0524, RbsK, Sugar kinases, ribokinase family [C	3e-13
pfam00294		298	pfam00294, PfkB, pfkB family carbohydrate kinase	4e-09
cd01174		292	cd01174, ribokinase, Ribokinase catalyses the phos	3e-06
cd01166		294	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (Kdg	4e-06
cd01167		295	cd01167, bac_FRK, Fructokinases (FRKs) mainly from	5e-06
cd01942		279	cd01942, ribokinase_group_A, Ribokinase-like subgr	3e-05
TIGR02152		293	TIGR02152, D_ribokin_bact, ribokinase	9e-05
PTZ00247		345	PTZ00247, PTZ00247, adenosine kinase; Provisional	2e-04
PLN02379		367	PLN02379, PLN02379, pfkB-type carbohydrate kinase	3e-04
PRK09434		304	PRK09434, PRK09434, aminoimidazole riboside kinase	0.001
PRK15074		434	PRK15074, PRK15074, inosine/guanosine kinase; Prov	0.003
PTZ00292		326	PTZ00292, PTZ00292, ribokinase; Provisional	0.003

>gnl\|CDD\|215434 PLN02813, PLN02813, pfkB-type carbohydrate kinase family protein	Back alignment and domain information

 Score =  285 bits (731), Expect = 5e-95
 Identities = 120/157 (76%), Positives = 135/157 (85%)

Query: 103 DDGDEYDEEISGSASVLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEER 162
            D ++ +         +PERWDVLGLGQAMVDFSGMVDD+FLERLGLEKGTRK++NHEER
Sbjct: 50  QDEEQPEGFGPIPEKAVPERWDVLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEER 109

Query: 163 GRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAK 222
           G+VLRA+DGCSYKA+AGGSLSN+LVALARLG +   GPALNVAM GSVGSDPLG FYR K
Sbjct: 110 GKVLRALDGCSYKASAGGSLSNTLVALARLGSQSAAGPALNVAMAGSVGSDPLGDFYRTK 169

Query: 223 LRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQ 259
           LRRANV F S+P+KDGTTGTVIVLTTPDAQR ML+YQ
Sbjct: 170 LRRANVHFLSQPVKDGTTGTVIVLTTPDAQRTMLSYQ 206

Length = 426

>gnl\|CDD\|238573 cd01168, adenosine_kinase, Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor	Back alignment and domain information

>gnl\|CDD\|223598 COG0524, RbsK, Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|215842 pfam00294, PfkB, pfkB family carbohydrate kinase	Back alignment and domain information

>gnl\|CDD\|238579 cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	Back alignment and domain information

>gnl\|CDD\|238571 cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	Back alignment and domain information

>gnl\|CDD\|238572 cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	Back alignment and domain information

>gnl\|CDD\|238917 cd01942, ribokinase_group_A, Ribokinase-like subgroup A	Back alignment and domain information

>gnl\|CDD\|233751 TIGR02152, D_ribokin_bact, ribokinase	Back alignment and domain information

>gnl\|CDD\|240328 PTZ00247, PTZ00247, adenosine kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|178005 PLN02379, PLN02379, pfkB-type carbohydrate kinase family protein	Back alignment and domain information

>gnl\|CDD\|236514 PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|185033 PRK15074, PRK15074, inosine/guanosine kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|185541 PTZ00292, PTZ00292, ribokinase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		270
PLN02813		426	pfkB-type carbohydrate kinase family protein	99.93
PRK15074		434	inosine/guanosine kinase; Provisional	99.89
PLN02379		367	pfkB-type carbohydrate kinase family protein	99.87
PTZ00247		345	adenosine kinase; Provisional	99.82
KOG2854		343	consensus Possible pfkB family carbohydrate kinase	99.79
cd01168		312	adenosine_kinase Adenosine kinase (AK) catalyzes t	99.76
PRK11142		306	ribokinase; Provisional	99.73
PLN02548		332	adenosine kinase	99.73
cd01944		289	YegV_kinase_like YegV-like sugar kinase. Found onl	99.71
PTZ00292		326	ribokinase; Provisional	99.71
cd01174		292	ribokinase Ribokinase catalyses the phosphorylatio	99.69
cd01939		290	Ketohexokinase Ketohexokinase (fructokinase, KHK)	99.67
cd01942		279	ribokinase_group_A Ribokinase-like subgroup A. Fou	99.67
KOG2855		330	consensus Ribokinase [Carbohydrate transport and m	99.66
PLN02323		330	probable fructokinase	99.66
COG0524		311	RbsK Sugar kinases, ribokinase family [Carbohydrat	99.65
cd01947		265	Guanosine_kinase_like Guanosine kinase-like sugar	99.65
PRK09850		313	pseudouridine kinase; Provisional	99.64
PLN02543		496	pfkB-type carbohydrate kinase family protein	99.63
PLN02967		581	kinase	99.62
cd01166		294	KdgK 2-keto-3-deoxygluconate kinase (KdgK) phospho	99.6
PF00294		301	PfkB: pfkB family carbohydrate kinase; InterPro: I	99.58
cd01167		295	bac_FRK Fructokinases (FRKs) mainly from bacteria	99.58
cd01945		284	ribokinase_group_B Ribokinase-like subgroup B. Fou	99.58
PLN02341		470	pfkB-type carbohydrate kinase family protein	99.55
PRK09954		362	putative kinase; Provisional	99.55
cd01941		288	YeiC_kinase_like YeiC-like sugar kinase. Found in	99.54
TIGR02152		293	D_ribokin_bact ribokinase. This model describes ri	99.54
PRK09813		260	fructoselysine 6-kinase; Provisional	99.53
PRK09434		304	aminoimidazole riboside kinase; Provisional	99.51
cd01940		264	Fructoselysine_kinase_like Fructoselysine kinase-l	99.5
TIGR03828		304	pfkB 1-phosphofructokinase. This enzyme acts in co	99.45
cd01172		304	RfaE_like RfaE encodes a bifunctional ADP-heptose	99.44
cd01943		328	MAK32 MAK32 kinase. MAK32 is a protein found prima	99.43
cd01164		289	FruK_PfkB_like 1-phosphofructokinase (FruK), minor	99.4
TIGR02198		315	rfaE_dom_I rfaE bifunctional protein, domain I. Rf	99.39
cd01937		254	ribokinase_group_D Ribokinase-like subgroup D. Fou	99.37
PRK10294		309	6-phosphofructokinase 2; Provisional	99.35
PRK11316		473	bifunctional heptose 7-phosphate kinase/heptose 1-	99.34
PRK09513		312	fruK 1-phosphofructokinase; Provisional	99.32
PRK13508		309	tagatose-6-phosphate kinase; Provisional	99.32
TIGR01231		309	lacC tagatose-6-phosphate kinase. This enzyme is p	99.31
TIGR03168		303	1-PFK hexose kinase, 1-phosphofructokinase family.	99.29
PLN02630		335	pfkB-type carbohydrate kinase family protein	99.11
cd01946		277	ribokinase_group_C Ribokinase-like subgroup C. Fou	98.97
KOG2947		308	consensus Carbohydrate kinase [Carbohydrate transp	98.83
COG2870		467	RfaE ADP-heptose synthase, bifunctional sugar kina	98.4
cd00287		196	ribokinase_pfkB_like ribokinase/pfkB superfamily:	98.06
COG1105		310	FruK Fructose-1-phosphate kinase and related fruct	98.02
KOG3009		614	consensus Predicted carbohydrate kinase, contains	96.64
PF09026		101	CENP-B_dimeris: Centromere protein B dimerisation	90.04

>PLN02813 pfkB-type carbohydrate kinase family protein	Back alignment and domain information

Probab=99.93  E-value=4.2e-25  Score=214.15  Aligned_cols=163  Identities=74%  Similarity=1.135  Sum_probs=143.4

Q ss_pred             CCCCCCcccccccCCCCCCCCCcEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCCh
Q 024255          102 DDDGDEYDEEISGSASVLPERWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGS  181 (270)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGs  181 (270)
                      ++|++|+|...+.+....+++++|++||++++|++..+++.|++++++++++++++++++..++++++.+..+...+||+
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~vl~iG~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~~~~~~~~GG~  128 (426)
T PLN02813         49 QQDEEQPEGFGPIPEKAVPERWDVLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDGCSYKASAGGS  128 (426)
T ss_pred             cCCCCCccccCCCCcccCCCcceEEEeCCceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhccCceEecCcH
Confidence            44455556777888889999999999999999999999998999999999999999999999999998888889999999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCcceEEEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEecCc
Q 024255          182 LSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVS  261 (270)
Q Consensus       182 AaNtAvaLARLG~~~~~~p~~~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~GA  261 (270)
                      ++|+|++|+|||.+....++.+|.|+|+||+|.+|+++++.|++.||++.++...+.+||+++++++++|+|+|++|+|+
T Consensus       129 ~~N~AvalarLG~~~~~~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~~~~~Tg~~~ilv~~~gertii~~~Ga  208 (426)
T PLN02813        129 LSNTLVALARLGSQSAAGPALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPVKDGTTGTVIVLTTPDAQRTMLSYQGT  208 (426)
T ss_pred             HHHHHHHHHHhccccccCCCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceecCCCCceEEEEEEcCCCCceeeeccCc
Confidence            99999999999942222233347999999999999999999999999999887556799999999999999999999998


Q ss_pred             ccc
Q 024255          262 FQR  264 (270)
Q Consensus       262 n~~  264 (270)
                      +..
T Consensus       209 ~~~  211 (426)
T PLN02813        209 SST  211 (426)
T ss_pred             hhh
Confidence            744

>PRK15074 inosine/guanosine kinase; Provisional	Back alignment and domain information

>PLN02379 pfkB-type carbohydrate kinase family protein	Back alignment and domain information

>PTZ00247 adenosine kinase; Provisional	Back alignment and domain information

>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor	Back alignment and domain information

>PRK11142 ribokinase; Provisional	Back alignment and domain information

>PLN02548 adenosine kinase	Back alignment and domain information

>cd01944 YegV_kinase_like YegV-like sugar kinase	Back alignment and domain information

>PTZ00292 ribokinase; Provisional	Back alignment and domain information

>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	Back alignment and domain information

>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose	Back alignment and domain information

>cd01942 ribokinase_group_A Ribokinase-like subgroup A	Back alignment and domain information

>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PLN02323 probable fructokinase	Back alignment and domain information

>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases	Back alignment and domain information

>PRK09850 pseudouridine kinase; Provisional	Back alignment and domain information

>PLN02543 pfkB-type carbohydrate kinase family protein	Back alignment and domain information

>PLN02967 kinase	Back alignment and domain information

>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	Back alignment and domain information

>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases	Back alignment and domain information

>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	Back alignment and domain information

>cd01945 ribokinase_group_B Ribokinase-like subgroup B	Back alignment and domain information

>PLN02341 pfkB-type carbohydrate kinase family protein	Back alignment and domain information

>PRK09954 putative kinase; Provisional	Back alignment and domain information

>cd01941 YeiC_kinase_like YeiC-like sugar kinase	Back alignment and domain information

>TIGR02152 D_ribokin_bact ribokinase	Back alignment and domain information

>PRK09813 fructoselysine 6-kinase; Provisional	Back alignment and domain information

>PRK09434 aminoimidazole riboside kinase; Provisional	Back alignment and domain information

>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like	Back alignment and domain information

>TIGR03828 pfkB 1-phosphofructokinase	Back alignment and domain information

>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose	Back alignment and domain information

>cd01943 MAK32 MAK32 kinase	Back alignment and domain information

>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	Back alignment and domain information

>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I	Back alignment and domain information

>cd01937 ribokinase_group_D Ribokinase-like subgroup D	Back alignment and domain information

>PRK10294 6-phosphofructokinase 2; Provisional	Back alignment and domain information

>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional	Back alignment and domain information

>PRK09513 fruK 1-phosphofructokinase; Provisional	Back alignment and domain information

>PRK13508 tagatose-6-phosphate kinase; Provisional	Back alignment and domain information

>TIGR01231 lacC tagatose-6-phosphate kinase	Back alignment and domain information

>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family	Back alignment and domain information

>PLN02630 pfkB-type carbohydrate kinase family protein	Back alignment and domain information

>cd01946 ribokinase_group_C Ribokinase-like subgroup C	Back alignment and domain information

>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group	Back alignment and domain information

>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]	Back alignment and domain information

>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		270
3ubo_A		354	The Crystal Structure Of Adenosine Kinase From Sino		5e-11
4e3a_A		352	Crystal Structure Of Probable Sugar Kinase Protein		3e-07
1bx4_A		345	Structure Of Human Adenosine Kinase At 1.50 Angstro		7e-05

>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From Sinorhizobium Meliloti Length = 354

Back alignment and structure

Iteration: 1

Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 13/139 (9%) Query: 122 RWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGS 181 ++DVL +G A+VD DD FLE G+ KG L+N +R +L + G + + A+GGS Sbjct: 5 KYDVLTIGNAIVDIIARCDDSFLEENGIIKGAXNLIN-ADRAELLYSRXGPAVE-ASGGS 62 Query: 182 LSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGT-- 239 N+ +A LGG+ A G V D LG + +R V F ++P+ DG Sbjct: 63 AGNTAAGVASLGGR--------AAYFGKVADDQLGEIFTHDIRAQGVHFQTKPL-DGHPP 113 Query: 240 TGTVIVLTTPDAQRAMLAY 258 T + T D +R+ Y Sbjct: 114 TARSXIFVTEDGERSXNTY 132

PyMOL of 3ubo

>pdb|4E3A|A Chain A, Crystal Structure Of Probable Sugar Kinase Protein From Rhizobium Etli Cfn 42 Length = 352

Back alignment and structure

>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms Length = 345

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		270
4e3a_A		352	Sugar kinase protein; structural genomics, protein	5e-46
3otx_A		347	Adenosine kinase, putative; AP5A, transferase-tran	2e-38
1bx4_A		345	Protein (adenosine kinase); human adenosine kinase	3e-36
3loo_A		365	Anopheles gambiae adenosine kinase; AP4A, P4-DI(ad	2e-33
2abs_A		383	Adenosine kinase, AK; ribokinase fold, alpha/beta,	7e-32
2hlz_A		312	Ketohexokinase; non-protein kinase, creatine kinas	1e-18
2c4e_A		302	Sugar kinase MJ0406; transferase, nucleoside kinas	1e-10
3h49_A		325	Ribokinase; transferase,PFKB family,sugar kinase Y	4e-10
2qcv_A		332	Putative 5-dehydro-2-deoxygluconokinase; structura	3e-09
3hj6_A		327	Fructokinase, FRK; fructose, transferase, carbohyd	8e-09
3pl2_A		319	Sugar kinase, ribokinase family; PFKB PFAM motif,	1e-08
2pkf_A		334	Adenosine kinase; transferase, S genomics, TB stru	2e-08
2qhp_A		296	Fructokinase; NP_810670.1, PFKB family carbohydrat	9e-08
3ljs_A		338	Fructokinase; fructokianse, PSI2, NYSGXRC, structu	1e-07
3ewm_A		313	Uncharacterized sugar kinase PH1459; carbohydrate	1e-07
1v1a_A		309	2-keto-3-deoxygluconate kinase; ATP, structural ge	1e-07
4du5_A		336	PFKB; structural genomics, PSI-biology, NEW YORK s	1e-07
1tyy_A		339	Putative sugar kinase; ribokinase fold, alpha/beta	2e-07
3iq0_A		330	Putative ribokinase II; transferase,kinase,SAD,rib	2e-07
2v78_A		313	Fructokinase; transferase, PFKB family carbohydrat	2e-07
2dcn_A		311	Hypothetical fructokinase; 2-keto-3-deoxygluconate	3e-07
2nwh_A		317	AGR_C_3442P, carbohydrate kinase; structural genom	9e-07
3ikh_A		299	Carbohydrate kinase; transferase,kinase,SAD,ribose	2e-06
3lhx_A		319	Ketodeoxygluconokinase; structural genomics, PSI-2	2e-06
2rbc_A		343	Sugar kinase, AGR_C_4560P; ribokinase family, ATP-	3e-06
4e69_A		328	2-dehydro-3-deoxygluconokinase; putative sugar kin	6e-06
3kd6_A		313	Carbohydrate kinase, PFKB family; nucleoside kinas	8e-06
1vm7_A		311	Ribokinase; TM0960, structural genomics, JCSG, pro	1e-05
2afb_A		351	2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-	1e-05
3go6_A		310	Ribokinase RBSK; phosphofructokinase, carbohydrate	2e-05
3kzh_A		328	Probable sugar kinase; NYSGXRC, PSI-II, protein st	2e-05
2fv7_A		331	Ribokinase; structural genomics, structural genomi	2e-05
1vk4_A		298	PFKB carbohydrate kinase TM0415; structural genomi	2e-05
3ktn_A		346	Carbohydrate kinase, PFKB family; PFKB family,ribo	2e-05
1rkd_A		309	Ribokinase; carbohydrate kinase, ribose, nucleotid	3e-05
3bf5_A		306	Ribokinase related protein; 10640157, putative rib	1e-04
3ry7_A		304	Ribokinase; transferase; 2.15A {Staphylococcus aur	2e-04
3b1n_A		326	Ribokinase, putative; rossmann fold, ATP binding,	3e-04

>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A* Length = 352	Back alignment and structure

 Score =  156 bits (397), Expect = 5e-46
 Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 11/138 (7%)

Query: 122 RWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGS 181
           R+DVL +G A+VD     +D FL    + K    L++ E    +   M       A+GGS
Sbjct: 25  RFDVLTVGNAIVDIISRCNDQFLIDNQITKAAMNLIDAERAELLYSRMG--PALEASGGS 82

Query: 182 LSNSLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDG-TT 240
             N+   +A LGGK         A  G+V +D LG  +   +R   V + ++P      T
Sbjct: 83  AGNTAAGVANLGGK--------AAYFGNVAADQLGDIFTHDIRAQGVHYQTKPKGAFPPT 134

Query: 241 GTVIVLTTPDAQRAMLAY 258
              ++  T D +R+M  Y
Sbjct: 135 ARSMIFVTEDGERSMNTY 152

PyMOL of 4e3a

>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A* Length = 347	Back alignment and structure

>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A* Length = 345	Back alignment and structure

>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae} Length = 365	Back alignment and structure

>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A* Length = 383	Back alignment and structure

>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A Length = 312	Back alignment and structure

>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A Length = 302	Back alignment and structure

>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A* Length = 325	Back alignment and structure

>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125} Length = 332	Back alignment and structure

>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii} Length = 327	Back alignment and structure

>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} Length = 319	Back alignment and structure

>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A* Length = 334	Back alignment and structure

>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Length = 296	Back alignment and structure

>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} PDB: 3lki_A* Length = 338	Back alignment and structure

>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A* Length = 313	Back alignment and structure

>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A Length = 309	Back alignment and structure

>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP} Length = 336	Back alignment and structure

>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A* Length = 339	Back alignment and structure

>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} PDB: 3k9e_A Length = 330	Back alignment and structure

>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A* Length = 313	Back alignment and structure

>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A* Length = 311	Back alignment and structure

>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str} Length = 317	Back alignment and structure

>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A* Length = 299	Back alignment and structure

>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri} Length = 319	Back alignment and structure

>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str} Length = 343	Back alignment and structure

>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A* Length = 328	Back alignment and structure

>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum} Length = 313	Back alignment and structure

>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1 Length = 311	Back alignment and structure

>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1 Length = 351	Back alignment and structure

>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A* Length = 310	Back alignment and structure

>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens} Length = 328	Back alignment and structure

>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1 Length = 331	Back alignment and structure

>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1 Length = 298	Back alignment and structure

>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis} Length = 346	Back alignment and structure

>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A* Length = 309	Back alignment and structure

>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728} Length = 306	Back alignment and structure

>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus} Length = 304	Back alignment and structure

>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A* Length = 326	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		270
3uq6_A		372	Adenosine kinase, putative; ribokinase, transferas	99.9
4e3a_A		352	Sugar kinase protein; structural genomics, protein	99.88
3vas_A		370	Putative adenosine kinase; ribokinase, enzyme, tra	99.87
3otx_A		347	Adenosine kinase, putative; AP5A, transferase-tran	99.86
3loo_A		365	Anopheles gambiae adenosine kinase; AP4A, P4-DI(ad	99.85
1bx4_A		345	Protein (adenosine kinase); human adenosine kinase	99.79
2abs_A		383	Adenosine kinase, AK; ribokinase fold, alpha/beta,	99.79
3go6_A		310	Ribokinase RBSK; phosphofructokinase, carbohydrate	99.76
1rkd_A		309	Ribokinase; carbohydrate kinase, ribose, nucleotid	99.75
2fv7_A		331	Ribokinase; structural genomics, structural genomi	99.75
3ry7_A		304	Ribokinase; transferase; 2.15A {Staphylococcus aur	99.74
2c4e_A		302	Sugar kinase MJ0406; transferase, nucleoside kinas	99.73
2hlz_A		312	Ketohexokinase; non-protein kinase, creatine kinas	99.73
2rbc_A		343	Sugar kinase, AGR_C_4560P; ribokinase family, ATP-	99.72
3ikh_A		299	Carbohydrate kinase; transferase,kinase,SAD,ribose	99.72
3h49_A		325	Ribokinase; transferase,PFKB family,sugar kinase Y	99.71
3ljs_A		338	Fructokinase; fructokianse, PSI2, NYSGXRC, structu	99.71
3kzh_A		328	Probable sugar kinase; NYSGXRC, PSI-II, protein st	99.7
3bf5_A		306	Ribokinase related protein; 10640157, putative rib	99.69
2pkf_A		334	Adenosine kinase; transferase, S genomics, TB stru	99.69
3lhx_A		319	Ketodeoxygluconokinase; structural genomics, PSI-2	99.67
1vm7_A		311	Ribokinase; TM0960, structural genomics, JCSG, pro	99.67
2nwh_A		317	AGR_C_3442P, carbohydrate kinase; structural genom	99.67
3ewm_A		313	Uncharacterized sugar kinase PH1459; carbohydrate	99.67
3pl2_A		319	Sugar kinase, ribokinase family; PFKB PFAM motif,	99.67
3b1n_A		326	Ribokinase, putative; rossmann fold, ATP binding,	99.67
4e69_A		328	2-dehydro-3-deoxygluconokinase; putative sugar kin	99.66
3hj6_A		327	Fructokinase, FRK; fructose, transferase, carbohyd	99.65
2v78_A		313	Fructokinase; transferase, PFKB family carbohydrat	99.65
2dcn_A		311	Hypothetical fructokinase; 2-keto-3-deoxygluconate	99.64
1tyy_A		339	Putative sugar kinase; ribokinase fold, alpha/beta	99.64
1v1a_A		309	2-keto-3-deoxygluconate kinase; ATP, structural ge	99.64
4du5_A		336	PFKB; structural genomics, PSI-biology, NEW YORK s	99.64
2qcv_A		332	Putative 5-dehydro-2-deoxygluconokinase; structura	99.62
3ktn_A		346	Carbohydrate kinase, PFKB family; PFKB family,ribo	99.62
3iq0_A		330	Putative ribokinase II; transferase,kinase,SAD,rib	99.61
4gm6_A		351	PFKB family carbohydrate kinase; enzyme function i	99.59
2ajr_A		331	Sugar kinase, PFKB family; TM0828, possible 1-phos	99.57
3cqd_A		309	6-phosphofructokinase isozyme 2; phosphofructokina	99.57
3umo_A		309	6-phosphofructokinase isozyme 2; glycolysis, trans	99.56
3ie7_A		320	LIN2199 protein; phosphofructokinases, transferase	99.55
2f02_A		323	Tagatose-6-phosphate kinase; LACC, structural geno	99.52
2qhp_A		296	Fructokinase; NP_810670.1, PFKB family carbohydrat	99.51
2jg1_A		330	Tagatose-6-phosphate kinase; phosphoryl transfer,	99.49
4e84_A		352	D-beta-D-heptose 7-phosphate kinase; LPS-heptose b	99.46
2jg5_A		306	Fructose 1-phosphate kinase; 1-phosphofructokinase	99.42
2afb_A		351	2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-	99.41
2abq_A		306	Fructose 1-phosphate kinase; dimer, structural gen	99.41
3kd6_A		313	Carbohydrate kinase, PFKB family; nucleoside kinas	99.34
1vk4_A		298	PFKB carbohydrate kinase TM0415; structural genomi	99.14

>3uq6_A Adenosine kinase, putative; ribokinase, transferase; HET: ADN AMP; 2.30A {Schistosoma mansoni} PDB: 3uq9_A*	Back alignment and structure

Probab=99.90  E-value=2.6e-23  Score=193.51  Aligned_cols=138  Identities=20%  Similarity=0.255  Sum_probs=119.1

Q ss_pred             CCcEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCC
Q 024255          122 RWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPA  201 (270)
Q Consensus       122 ~~~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~  201 (270)
                      ...|++||+++||+++++++.|+++++|++|.++++++++++.+.+..........+||+++|+|+++++||.+.     
T Consensus        26 ~~~v~giGnalvDi~~~v~d~~l~~~~l~kg~m~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~la~LG~~~-----  100 (372)
T 3uq6_A           26 EGYVFGMGNPLLDIIVDADDFMYRKYNLKKDNIVLAEEKHMTIYDEIQKKKKLNYIAGGATLNTVKMIQWIIQKP-----  100 (372)
T ss_dssp             TTCEEEEECCEEEEEEECCTHHHHHTTCCTTEEEECCGGGTTHHHHHHTSSSCEEEECCHHHHHHHHHHHHHCST-----
T ss_pred             CCeEEEECCceeeEEEEeCHHHHHHcCCCCCceEEcCHHHHHHHHHHhccCCeEEeCCcHHHHHHHHHHHcCCCC-----
Confidence            346999999999999999999999999999999999866555444444455678899999999999999999762     


Q ss_pred             cceEEEEEeCCCchHHHHHHHHHHcCCCCccccccCC-CCceEEEEEcCCCCeEEEEecCccccc
Q 024255          202 LNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDG-TTGTVIVLTTPDAQRAMLAYQVSFQRS  265 (270)
Q Consensus       202 ~~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g-~TG~~~VLv~~dGeRTiv~~~GAn~~~  265 (270)
                      ..|+|+|+||+|.+|+++++.|++.||++.++...+. +|+.|+++++ +|+|+|++|+|++...
T Consensus       101 ~~~~fiG~VG~D~~G~~l~~~L~~~GV~~~~~~~~~~~~T~~~~v~~~-dgert~~~~~ga~~~l  164 (372)
T 3uq6_A          101 FVCSYVGCIGADIQGKYIKNDCSALDLVTEFQIAEEPLMTGKVAVLVS-EKLRSMVTYLGAACDL  164 (372)
T ss_dssp             TSEEEEEEECSSHHHHHHHHHHHHTTCEECCEECCTTCCEEEEEEEEC-SSCEEEEEEEEGGGGC
T ss_pred             CcEEEEeeecCCHHHHHHHHHHHHcCCCceeeeecCCCCceEEEEEcC-CCceEEEEeccchhhc
Confidence            2379999999999999999999999999999877664 8999999886 8999999999987653

PyMOL of 3uq6

>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A*	Back alignment and structure

>3vas_A Putative adenosine kinase; ribokinase, enzyme, transferase; HET: ADN; 2.26A {Schistosoma mansoni} PDB: 4dc3_A* 3vaq_A* 3uq6_A* 3uq9_A*	Back alignment and structure

>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A*	Back alignment and structure

>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae}	Back alignment and structure

>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A*	Back alignment and structure

>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A*	Back alignment and structure

>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A*	Back alignment and structure

>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*	Back alignment and structure

>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1	Back alignment and structure

>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}	Back alignment and structure

>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A	Back alignment and structure

>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A	Back alignment and structure

>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}	Back alignment and structure

>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A*	Back alignment and structure

>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A*	Back alignment and structure

>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} SCOP: c.72.1.0 PDB: 3lki_A*	Back alignment and structure

>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens}	Back alignment and structure

>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728}	Back alignment and structure

>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A*	Back alignment and structure

>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri}	Back alignment and structure

>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1	Back alignment and structure

>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str}	Back alignment and structure

>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A*	Back alignment and structure

>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} SCOP: c.72.1.0	Back alignment and structure

>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A*	Back alignment and structure

>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*	Back alignment and structure

>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii}	Back alignment and structure

>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A*	Back alignment and structure

>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*	Back alignment and structure

>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A*	Back alignment and structure

>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A	Back alignment and structure

>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP}	Back alignment and structure

>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}	Back alignment and structure

>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis}	Back alignment and structure

>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} SCOP: c.72.1.0 PDB: 3k9e_A	Back alignment and structure

>4gm6_A PFKB family carbohydrate kinase; enzyme function initiative, transferase; 2.00A {Listeria grayi dsm 20601}	Back alignment and structure

>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1	Back alignment and structure

>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A*	Back alignment and structure

>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*	Back alignment and structure

>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A	Back alignment and structure

>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A*	Back alignment and structure

>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482}	Back alignment and structure

>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*	Back alignment and structure

>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A*	Back alignment and structure

>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus}	Back alignment and structure

>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1	Back alignment and structure

>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1	Back alignment and structure

>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum}	Back alignment and structure

>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		270
d1bx4a_		342	c.72.1.1 (A:) Adenosine kinase {Human (Homo sapien	5e-20
d2absa1		350	c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma g	5e-18
d2ajra1		319	c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {T	5e-09
d2afba1		333	c.72.1.1 (A:-2-330) 2-keto-3-deoxygluconate kinase	2e-08
d1v19a_		302	c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Ther	4e-06
d2dcna1		308	c.72.1.1 (A:2-309) Hypothetical fructokinase ST247	4e-06
d1vk4a_		288	c.72.1.1 (A:) Hypothetical protein TM0415 {Thermot	9e-06
d1tyya_		304	c.72.1.1 (A:) Aminoimidazole riboside kinase {Salm	2e-05
d2abqa1		306	c.72.1.1 (A:1-306) Fructose 1-phosphate kinase Fru	1e-04
d2f02a1		313	c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase Lac	1e-04
d2fv7a1		308	c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapien	4e-04
d1vm7a_		299	c.72.1.1 (A:) Ribokinase {Thermotoga maritima [Tax	0.002

>d1bx4a_ c.72.1.1 (A:) Adenosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 342	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Adenosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (211), Expect = 5e-20
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 4/131 (3%)

Query: 125 VLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSN 184
           + G+G  ++D S +VD DFL++  L+   + L   + +      +     +  AGGS  N
Sbjct: 6   LFGMGNPLLDISAVVDKDFLDKYSLKPNDQILAEDKHKELFDELVKKFKVEYHAGGSTQN 65

Query: 185 SLVALARLGGKPIGGPALNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVI 244
           S+     +  +P           G +G D  G   + K   A+V        +  TGT  
Sbjct: 66  SIKVAQWMIQQPHK----AATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQNEQPTGTCA 121

Query: 245 VLTTPDAQRAM 255
              T D +  +
Sbjct: 122 ACITGDNRSLI 132

PyMOL of d1bx4a_

>d2absa1 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma gondii [TaxId: 5811]} Length = 350	Back information, alignment and structure

>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga maritima [TaxId: 2336]} Length = 319	Back information, alignment and structure

>d2afba1 c.72.1.1 (A:-2-330) 2-keto-3-deoxygluconate kinase {Thermotoga maritima, TM0067 [TaxId: 2336]} Length = 333	Back information, alignment and structure

>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus thermophilus [TaxId: 274]} Length = 302	Back information, alignment and structure

>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478 {Sulfolobus tokodaii [TaxId: 111955]} Length = 308	Back information, alignment and structure

>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga maritima [TaxId: 2336]} Length = 288	Back information, alignment and structure

>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella typhimurium [TaxId: 90371]} Length = 304	Back information, alignment and structure

>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]} Length = 306	Back information, alignment and structure

>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC {Enterococcus faecalis [TaxId: 1351]} Length = 313	Back information, alignment and structure

>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 308	Back information, alignment and structure

>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId: 2336]} Length = 299	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		270
d2absa1		350	Adenosine kinase {Toxoplasma gondii [TaxId: 5811]}	99.85
d1bx4a_		342	Adenosine kinase {Human (Homo sapiens) [TaxId: 960	99.82
d2fv7a1		308	Ribokinase {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1vm7a_		299	Ribokinase {Thermotoga maritima [TaxId: 2336]}	99.68
d1rkda_		306	Ribokinase {Escherichia coli [TaxId: 562]}	99.63
d2afba1		333	2-keto-3-deoxygluconate kinase {Thermotoga maritim	99.62
d1tyya_		304	Aminoimidazole riboside kinase {Salmonella typhimu	99.6
d1v19a_		302	2-keto-3-deoxygluconate kinase {Thermus thermophil	99.59
d2dcna1		308	Hypothetical fructokinase ST2478 {Sulfolobus tokod	99.55
d2f02a1		313	Tagatose-6-phosphate kinase LacC {Enterococcus fae	99.26
d2ajra1		319	Putative sugar kinase TM0828 {Thermotoga maritima	99.25
d2abqa1		306	Fructose 1-phosphate kinase FruB {Bacillus halodur	99.18
d1vk4a_		288	Hypothetical protein TM0415 {Thermotoga maritima [	99.11

>d2absa1 c.72.1.1 (A:10-359) Adenosine kinase {Toxoplasma gondii [TaxId: 5811]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: Ribokinase-like
family: Ribokinase-like
domain: Adenosine kinase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.85  E-value=3e-21  Score=171.20  Aligned_cols=138  Identities=22%  Similarity=0.326  Sum_probs=116.1

Q ss_pred             CCcEEEEcCcceeeEeecChhHHHhhccCCCceeeeccccccceeeeccCCccEEecCChHHHHHHHHHHhCCCCCCCCC
Q 024255          122 RWDVLGLGQAMVDFSGMVDDDFLERLGLEKGTRKLVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGGKPIGGPA  201 (270)
Q Consensus       122 ~~~VlvIG~alVDii~~vd~~~pe~~~L~~G~~~lv~~ee~~~l~e~i~~~~~~~~~GGsAaNtAvaLARLG~~~~~~p~  201 (270)
                      +++|+|||+++||++.++++.|++++++++|.+.+++.++.. ++..+........+||+++|+|++|++||...     
T Consensus         3 p~kil~iG~~~vD~~~~v~~~~l~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~GG~~~N~a~~la~L~~~g-----   76 (350)
T d2absa1           3 PMRVFAIGNPILDLVAEVPSSFLDEFFLKRGDATLATPEQMR-IYSTLDQFNPTSLPGGSALNSVRVVQKLLRKP-----   76 (350)
T ss_dssp             CCCEEEECCCEEEEEEECCHHHHHHTTCCTTCEEECCGGGGG-GGGTGGGGCCEEEEESHHHHHHHHHHHHHCST-----
T ss_pred             CcEEEEECCceEEEEEEeCHHHHHHcCCCCCcceecCHHHHH-HHHhhhccCceEecCcHHHHHHHHHHHhccCC-----
Confidence            579999999999999999988999999999999998866444 44455445567789999999999999995431     


Q ss_pred             cceEEEEEeCCCchHHHHHHHHHHcCCCCccccccCCCCceEEEEEcCCCCeEEEEecCcccccc
Q 024255          202 LNVAMTGSVGSDPLGGFYRAKLRRANVAFCSEPIKDGTTGTVIVLTTPDAQRAMLAYQVSFQRSI  266 (270)
Q Consensus       202 ~~V~fVG~VGdD~~Ge~I~e~L~e~GVdt~~v~~~~g~TG~~~VLv~~dGeRTiv~~~GAn~~~~  266 (270)
                      .+|.|+|+||+|.+|+++++.|++.||++.++...+..|+.|+++++ +++|+++++.+++....
T Consensus        77 ~~~~~ig~vG~D~~G~~i~~~l~~~gv~~~~~~~~~~~t~~~~v~~~-~~~~~~~~~~~~~~~~~  140 (350)
T d2absa1          77 GSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVLIN-EKERTLCTHLGACGSFR  140 (350)
T ss_dssp             TSEEEEEEECSSHHHHHHHHHHHHHTCEEEEEECTTCCCEEEEEEEE-TTEEEEEEECGGGGGCC
T ss_pred             ccEEEEecCCCChhhHhHHHHHHhcCCcccccccccccceEEEEEee-ccCcceEeeeccccccc
Confidence            12799999999999999999999999999988665568999999998 67899999988765443

PyMOL of d2absa1

>d1bx4a_ c.72.1.1 (A:) Adenosine kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2fv7a1 c.72.1.1 (A:15-322) Ribokinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vm7a_ c.72.1.1 (A:) Ribokinase {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1tyya_ c.72.1.1 (A:) Aminoimidazole riboside kinase {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2dcna1 c.72.1.1 (A:2-309) Hypothetical fructokinase ST2478 {Sulfolobus tokodaii [TaxId: 111955]}	Back information, alignment and structure

>d2f02a1 c.72.1.1 (A:1-313) Tagatose-6-phosphate kinase LacC {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d2ajra1 c.72.1.1 (A:1-319) Putative sugar kinase TM0828 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

>d1vk4a_ c.72.1.1 (A:) Hypothetical protein TM0415 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure