Citrus Sinensis ID: 024283

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMIIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDR
Secondary Structure (PSIPRED)
cccccEEEcccccccccccccccccccccccccccccccccEEEEEEEEEccccccHHHHHHHcccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEccHHHHccccccccccccHHHHHccccccccccccEEEEEEcEccccccccEEEEEHHccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MASLTSVAFTsigqtscqrkvnvsstrsLVSNFEGFRFRTSLFCHcvrfrasssssRMIIQCMstatdvpptvAETKMNFLKlykrpipsiYNTVLQELIVQQHLMRykrtyqydpvfALGFVTVYDRlmegypseeDREAIFQAYITALKEDPEQYRIDAQKLEEWargqtasslvefpskegevEGLLKDIAERasgkgnfsySRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDR
Flexible Loop (DISEMBL)
masltsvaftsigqtscqrkvnvsstrslVSNFEGFRFRTSLFCHCVRFRASSSSSRMIIQCMstatdvpptvAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQtasslvefpskegEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVlnvnkrsvdrdldVYRNLLSKllqakellkeyvdr
Low Complexity Region (SEG)
MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMIIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNllskllqakellkEYVDR
Disordered region (IsUnstruct)
***********I****CQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMIIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKL*EW*********************LLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELL******
Disordered Region (DISOPRED)
*****SV*FT*******************VSNFEGFRFRTSLFCHCVRFRA**SS*RMIIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQ**************************LLKD**ERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVD*
Disordered Region (DISEMBL)
********FTSIG************TRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMIIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDR
Disordered Region (DISPRO)
********FTSIGQ*******************EGFRFRTSLFCHCVRFRASSSSSRMIIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMIIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVxxxxxxxxxxxxxxxxxxxxx
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q7XAB8	293	Protein THYLAKOID FORMATI	N/A	no	0.981	0.901	0.698	1e-105
Q84PB7	287	Protein THYLAKOID FORMATI	yes	no	0.791	0.742	0.816	1e-103
Q9SKT0	300	Protein THYLAKOID FORMATI	yes	no	0.944	0.846	0.672	1e-102
B0C3M8	247	Protein thf1 OS=Acaryochl	yes	no	0.717	0.781	0.363	1e-35
Q116P5	239	Protein thf1 OS=Trichodes	yes	no	0.721	0.811	0.379	5e-34
B8HQ62	236	Protein thf1 OS=Cyanothec	yes	no	0.724	0.826	0.401	1e-32
Q8YZ41	233	Protein thf1 OS=Nostoc sp	yes	no	0.684	0.789	0.373	2e-32
B2J353	235	Protein thf1 OS=Nostoc pu	yes	no	0.684	0.782	0.368	2e-32
Q3M4B2	233	Protein thf1 OS=Anabaena	yes	no	0.684	0.789	0.368	6e-32
Q5N664	254	Protein thf1 OS=Synechoco	yes	no	0.732	0.775	0.338	3e-28

>sp|Q7XAB8|THF1_SOLTU Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1

 Score =  380 bits (976), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 188/269 (69%), Positives = 226/269 (84%), Gaps = 5/269 (1%)

Query: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60
           MA++TSV+F++I Q S +RK +VSS+RS+    + FRFR++     V  R+S+S+SR ++
Sbjct: 1   MAAVTSVSFSAITQ-SAERKSSVSSSRSI----DTFRFRSNFSFDSVNVRSSNSTSRFVV 55

Query: 61  QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120
            C S++    PTVA+TK+ FL  YKRPIP++YNTVLQELIVQQHL RYK++YQYDPVFAL
Sbjct: 56  HCTSSSAADLPTVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFAL 115

Query: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180
           GFVTVYD+LMEGYPSEEDR AIF+AYI ALKEDPEQYR DAQKLEEWAR Q A++LV+F 
Sbjct: 116 GFVTVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFS 175

Query: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKR 240
           SKEGE+E + KDIA+RA  K  F YSR FAVGLFRLLELAN T+PT+LEKLCA LNVNK+
Sbjct: 176 SKEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKK 235

Query: 241 SVDRDLDVYRNLLSKLLQAKELLKEYVDR 269
           SVDRDLDVYRNLLSKL+QAKELLKEYV+R
Sbjct: 236 SVDRDLDVYRNLLSKLVQAKELLKEYVER 264

Involved in a dynamic process of vesicle-mediated thylakoid membrane biogenesis. Required for the normal organization of vesicles into mature thylakoid stacks and ultimately for leaf development.
Solanum tuberosum (taxid: 4113)

>sp|Q84PB7|THF1_ORYSJ Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=THF1 PE=2 SV=1

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 174/213 (81%), Positives = 196/213 (92%)

Query: 55  SSRMIIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQY 114
            SR +++C++TA DVPPTVAETKMNFLK YKRPI SIY+TVLQEL+VQQHLMRYK TYQY
Sbjct: 43  GSRSVVRCVATAGDVPPTVAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQY 102

Query: 115 DPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTAS 174
           D VFALGFVTVYD+LMEGYPS EDR+AIF+AYITAL EDPEQYR DAQK+EEWAR Q  +
Sbjct: 103 DAVFALGFVTVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGN 162

Query: 175 SLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAV 234
           SLVEF SK+GE+E +LKDI+ERA GKG+FSYSRFFAVGLFRLLELANATEPT+L+KLCA 
Sbjct: 163 SLVEFSSKDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAA 222

Query: 235 LNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYV 267
           LN+NKRSVDRDLDVYRN+LSKL+QAKELLKEYV
Sbjct: 223 LNINKRSVDRDLDVYRNILSKLVQAKELLKEYV 255

Involved in a dynamic process of vesicle-mediated thylakoid membrane biogenesis. Required for the normal organization of vesicles into mature thylakoid stacks and ultimately for leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SKT0|THF1_ARATH Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=1 SV=1

 Score =  369 bits (948), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 183/272 (67%), Positives = 219/272 (80%), Gaps = 18/272 (6%)

Query: 3   SLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFR----ASSSSSRM 58
           +++S++F ++GQ+              +SNF   R   S    C +F      S S+S+ 
Sbjct: 5   AISSLSFPALGQSD------------KISNFASSRPLASAIRICTKFSRLSLNSRSTSKS 52

Query: 59  IIQCMSTAT-DVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPV 117
           +I CMS  T DVPP V+ETK  FLK YKRPIPSIYNTVLQELIVQQHLMRYK+TY+YDPV
Sbjct: 53  LIHCMSNVTADVPP-VSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPV 111

Query: 118 FALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV 177
           FALGFVTVYD+LMEGYPS++DR+AIF+AYI AL EDP+QYRIDAQK+EEWAR QT++SLV
Sbjct: 112 FALGFVTVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLV 171

Query: 178 EFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNV 237
           +F SKEG++E +LKDIA RA  K  FSYSRFFAVGLFRLLELA+AT+PTVL+KLCA LN+
Sbjct: 172 DFSSKEGDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNI 231

Query: 238 NKRSVDRDLDVYRNLLSKLLQAKELLKEYVDR 269
           NK+SVDRDLDVYRNLLSKL+QAKELLKEYV+R
Sbjct: 232 NKKSVDRDLDVYRNLLSKLVQAKELLKEYVER 263

Involved in a dynamic process of vesicle-mediated thylakoid membrane biogenesis. Required for the normal organization of vesicles into mature thylakoid stacks and ultimately for leaf development. Also involved in a sugar-signaling mechanism in roots by mediating signaling between the plasma membrane and the plastid. Probably acts downstream of the plasma membrane-delimited heterotrimeric G-protein GPA1 in a D-glucose signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|B0C3M8|THF1_ACAM1 Protein thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1 PE=3 SV=1

 Score =  150 bits (378), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 129/209 (61%), Gaps = 16/209 (7%)

Query: 72  TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
           TV++TK  F  ++ RP+ S+Y  V++EL+V+ HL+R    ++YDP+FALG  T +DR M+
Sbjct: 6   TVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFDRFMD 65

Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEG-----EV 186
           GY  E D++AIF A   A + DP Q + D Q+L E A+ ++A  ++++ ++       E+
Sbjct: 66  GYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGGDEL 125

Query: 187 EGLLKDIAERASGKGNFSYSRFFAVGLFRLLELA--NATE-----PTVLEKLCAVLNVNK 239
           +  L++IA+       F YSR FA+GLF LLEL+  N T+        L  +C VLN+++
Sbjct: 126 QWQLRNIAQNPK----FKYSRLFAIGLFTLLELSEGNITQDEESLAEFLPNICTVLNISE 181

Query: 240 RSVDRDLDVYRNLLSKLLQAKELLKEYVD 268
             + +DL++YR  L K+ Q ++ + + ++
Sbjct: 182 SKLQKDLEIYRGNLDKIAQVRQAMDDILE 210

May be involved in photosynthetic membrane biogenesis.

Acaryochloris marina (strain MBIC 11017) (taxid: 329726)

>sp|Q116P5|THF1_TRIEI Protein thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1 PE=3 SV=1

 Score =  144 bits (364), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 120/203 (59%), Gaps = 9/203 (4%)

Query: 72  TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
           TV++TK  F   + RPI SIYN V++EL+V+ HL+     Y Y+P +ALG VT +DR M+
Sbjct: 6   TVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFDRFMQ 65

Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP--SKEGEVEGL 189
           GY  +ED+ +IF A I   +EDP +YR DA+ LE+ A   +AS ++ +   SK  +    
Sbjct: 66  GYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQY 125

Query: 190 LKDIAERASGKGNFSYSRFFAVGLFRLLELANA-------TEPTVLEKLCAVLNVNKRSV 242
           L+D     S    F YSR FA+GLF LLE+ +             L+K+C  LN+ +  +
Sbjct: 126 LQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTELIKEQEKRTEALKKICQSLNLVEEKL 185

Query: 243 DRDLDVYRNLLSKLLQAKELLKE 265
            +D+D+Y + L ++ QA+  +++
Sbjct: 186 LKDIDLYLSNLERVAQARSAMED 208

May be involved in photosynthetic membrane biogenesis.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

>sp|B8HQ62|THF1_CYAP4 Protein thf1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=thf1 PE=3 SV=1

 Score =  140 bits (352), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/209 (40%), Positives = 125/209 (59%), Gaps = 14/209 (6%)

Query: 70  PPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRL 129
           P TV++TK  F   + RPI SIY  V++EL+V+ HL+R  +T+ YDPVFALG VT ++R 
Sbjct: 4   PRTVSDTKRAFYHNHARPINSIYRRVVEELLVEIHLLRVNQTFVYDPVFALGVVTTFERF 63

Query: 130 MEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGL 189
           M+GY    D+ +IF A   A + DP+Q + DAQ+L    RGQ+  SL+++ S    + G 
Sbjct: 64  MQGYHPPADQTSIFNAICLAQELDPQQVQQDAQELLGRVRGQSLESLLDWISTAASLGGD 123

Query: 190 LKDIAERA-SGKGNFSYSRFFAVGLFRLLELANATEP----------TVLEKLCAVLNVN 238
            +    RA +    F YSR FAVGLF LLE A   EP           VL+++  V+++ 
Sbjct: 124 EQQNRLRAIASNPTFKYSRLFAVGLFTLLEQA---EPELGKDEARLLQVLQQVGEVMHLP 180

Query: 239 KRSVDRDLDVYRNLLSKLLQAKELLKEYV 267
              + +DL+ YR+ L K+ QA++ L++ V
Sbjct: 181 VEKMQKDLEQYRSNLEKMTQARKTLEDIV 209

May be involved in photosynthetic membrane biogenesis.

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

>sp|Q8YZ41|THF1_NOSS1 Protein thf1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=thf1 PE=3 SV=1

 Score =  139 bits (351), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/201 (37%), Positives = 121/201 (60%), Gaps = 17/201 (8%)

Query: 72  TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
           TV++TK  F  L+ RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +DR ME
Sbjct: 6   TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFME 65

Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPS------KEGE 185
           GY  E D+E+IF A   A++++P++YR DA++L+  A+    + LV + S      ++ +
Sbjct: 66  GYQPERDKESIFSAICQAVEQEPQRYRQDAERLQAVAQSLPVNDLVAWLSQANHLQQDAD 125

Query: 186 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANAT-------EPTVLEKLCAVLNVN 238
           ++  L+ IA       NF YSR FA+GLF LLE +N             L+ + A L+++
Sbjct: 126 LQAQLQAIA----NNSNFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKSIAAGLHLS 181

Query: 239 KRSVDRDLDVYRNLLSKLLQA 259
                +DL++YR+ L K+ QA
Sbjct: 182 DDKFSKDLELYRSNLDKMTQA 202

May be involved in photosynthetic membrane biogenesis.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|B2J353|THF1_NOSP7 Protein thf1 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=thf1 PE=3 SV=1

 Score =  139 bits (351), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/201 (36%), Positives = 123/201 (61%), Gaps = 17/201 (8%)

Query: 72  TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
           TV++TK  F  L+ RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +DR M+
Sbjct: 6   TVSDTKRTFYNLHTRPINTIYRRVVEELMVEMHLLSVNIDFSYNPIYALGVVTTFDRFMQ 65

Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV------EFPSKEGE 185
           GY  E D+E+IF A   A+++DP+ YR DA++L+  A+G     L+       +  ++ +
Sbjct: 66  GYEPERDQESIFNALCRAIEQDPQHYRQDAERLQAIAKGLPVKDLIGWLGQTTYLDRDAD 125

Query: 186 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANA----TEPTVLEKLCAV---LNVN 238
           ++  L+ IA       NF Y+R FA+G+F LLE ++      E  + E L A+   L+V+
Sbjct: 126 LQAQLQAIA----NNPNFKYNRLFAIGVFSLLEQSDPELVKDEKQLTEALKAIAAGLHVS 181

Query: 239 KRSVDRDLDVYRNLLSKLLQA 259
              +++DL++YR+ L K+ QA
Sbjct: 182 DDKLNKDLELYRSNLDKMAQA 202

May be involved in photosynthetic membrane biogenesis.

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

>sp|Q3M4B2|THF1_ANAVT Protein thf1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=thf1 PE=3 SV=1

 Score =  137 bits (346), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 74/201 (36%), Positives = 122/201 (60%), Gaps = 17/201 (8%)

Query: 72  TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
           TV++TK  F  L+ RPI +IY  V++EL+V+ HL+     + Y+P++ALG VT +DR M+
Sbjct: 6   TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMQ 65

Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPS------KEGE 185
           GY  E D+E+IF A   A++++P++YR DA++L+  A+    + LV + S      ++ +
Sbjct: 66  GYQPERDKESIFSAICQAVEQEPQRYRQDAERLKAVAQSLPVNDLVAWLSQANHLQQDAD 125

Query: 186 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANAT-------EPTVLEKLCAVLNVN 238
           ++  L+ IA       NF YSR FA+GLF LLE +N             L+ + A L+++
Sbjct: 126 LQAQLQAIA----SNPNFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKTIAAGLHLS 181

Query: 239 KRSVDRDLDVYRNLLSKLLQA 259
              + +DL++YR+ L K+ QA
Sbjct: 182 DDKLSKDLELYRSNLDKMTQA 202

May be involved in photosynthetic membrane biogenesis.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

>sp|Q5N664|THF1_SYNP6 Protein thf1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=thf1 PE=3 SV=2

 Score =  125 bits (314), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 116/207 (56%), Gaps = 10/207 (4%)

Query: 71  PTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLM 130
           PTV+++K  F   Y RPI  +Y  V++EL+V+ HL+    ++ YDP+FALG VT +D  M
Sbjct: 5   PTVSDSKRAFYAAYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFM 64

Query: 131 EGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKE---GEVE 187
             Y   E    +F A   A++++PEQYR DA  + E  RG  + ++ ++ ++    G   
Sbjct: 65  SSYRPIEAVGPLFTALTQAVRQNPEQYRHDANAIAEQVRGVGSDTIRQWLTEAEALGNAP 124

Query: 188 GLLKDIAERASGKGNFSYSRFFAVGLFRLLELANAT---EPTVLEKLCAVL----NVNKR 240
            L++   +  +G+  F YSR FA+GLF LLE A      +P  L+     +    ++   
Sbjct: 125 ELVRSSFQAIAGRSEFKYSRLFAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSD 184

Query: 241 SVDRDLDVYRNLLSKLLQAKELLKEYV 267
            + +DLD+YR+ L K+ QA+  ++E +
Sbjct: 185 KLQKDLDLYRSNLEKMEQARITMEEAI 211

May be involved in photosynthetic membrane biogenesis.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
356543780	297	PREDICTED: protein THYLAKOID FORMATION1,	0.996	0.902	0.776	1e-120
356549970	297	PREDICTED: protein THYLAKOID FORMATION1,	0.996	0.902	0.769	1e-119
255553917	299	Protein THYLAKOID FORMATION1, chloroplas	0.996	0.896	0.774	1e-119
449438054	298	PREDICTED: protein THYLAKOID FORMATION 1	0.992	0.895	0.773	1e-119
255636566	297	unknown [Glycine max]	0.996	0.902	0.769	1e-119
224124656	298	predicted protein [Populus trichocarpa]	0.996	0.899	0.762	1e-118
359485791	299	PREDICTED: protein THYLAKOID FORMATION1,	0.992	0.892	0.773	1e-116
224146717	296	predicted protein [Populus trichocarpa]	0.988	0.898	0.762	1e-115
356542877	291	PREDICTED: protein THYLAKOID FORMATION1,	0.966	0.893	0.736	1e-112
356517586	291	PREDICTED: protein THYLAKOID FORMATION1,	0.977	0.903	0.729	1e-111

>gi|356543780|ref|XP_003540338.1| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Glycine max]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/269 (77%), Positives = 240/269 (89%), Gaps = 1/269 (0%)

Query: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60
           MA+LTS++F+++   S +RKV +SSTR L S+ E F FRT    H V  RAS+S S+M++
Sbjct: 1   MAALTSLSFSAVTHCS-ERKVTLSSTRFLASSSEIFGFRTDFSYHYVGVRASNSPSKMVV 59

Query: 61  QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120
           QCMS+ATDVPPTV+ETK+NFLK YKRPIPSIYNTVLQELIVQQHLM+YKR+Y+YDPVFAL
Sbjct: 60  QCMSSATDVPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMKYKRSYRYDPVFAL 119

Query: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180
           GFVT+YD+LMEGYPS+EDR+AIFQAYI ALKEDPEQYRIDA+KLEEWAR Q  +SLVEF 
Sbjct: 120 GFVTIYDKLMEGYPSDEDRDAIFQAYIKALKEDPEQYRIDARKLEEWARVQKPTSLVEFS 179

Query: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKR 240
           SKEGEVEG+LKDIAERA GKG FSYSRFFAVGLFRLLELANATEPT+L+KLC  LN+NKR
Sbjct: 180 SKEGEVEGILKDIAERAGGKGEFSYSRFFAVGLFRLLELANATEPTILDKLCVALNINKR 239

Query: 241 SVDRDLDVYRNLLSKLLQAKELLKEYVDR 269
           SVDRDLDVYR LLSKL+QAKELLKEY+DR
Sbjct: 240 SVDRDLDVYRILLSKLVQAKELLKEYIDR 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549970|ref|XP_003543363.1| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Glycine max]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/269 (76%), Positives = 241/269 (89%), Gaps = 1/269 (0%)

Query: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60
           MA+LTS++F+++   S +RKV +SSTR L S+ E F FRT    H V  RAS+S+S+M++
Sbjct: 1   MAALTSLSFSAVTHCS-ERKVTLSSTRFLASSSELFGFRTDFSYHYVGVRASNSASKMVV 59

Query: 61  QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120
           QCMS+ATDVPPTV+ETK+NFLK YKRPIPSIYNTVLQELIVQQHLM+YKR+Y+YDPVFAL
Sbjct: 60  QCMSSATDVPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMKYKRSYRYDPVFAL 119

Query: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180
           GFVT+YD+LMEGYPS+EDR+AIFQAYI ALKEDPEQYRIDA+KLEEWAR Q+ +SLVEF 
Sbjct: 120 GFVTIYDKLMEGYPSDEDRDAIFQAYIKALKEDPEQYRIDARKLEEWARVQSPTSLVEFS 179

Query: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKR 240
           SKEGE E +LKDIAERA GKG FSYSRFFAVGLFRL+ELANATEPT+L+KLCA LN+NKR
Sbjct: 180 SKEGEAERILKDIAERAGGKGEFSYSRFFAVGLFRLVELANATEPTILDKLCAALNINKR 239

Query: 241 SVDRDLDVYRNLLSKLLQAKELLKEYVDR 269
           SVDRDLDVYR LLSKL+QAKELLKEY+DR
Sbjct: 240 SVDRDLDVYRILLSKLVQAKELLKEYIDR 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553917|ref|XP_002517999.1| Protein THYLAKOID FORMATION1, chloroplast precursor, putative [Ricinus communis] gi|223542981|gb|EEF44517.1| Protein THYLAKOID FORMATION1, chloroplast precursor, putative [Ricinus communis]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/271 (77%), Positives = 239/271 (88%), Gaps = 3/271 (1%)

Query: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLF-CHCVRFRAS-SSSSRM 58
           MA++TSV+F++I Q+  +RK   S +RS  SNF+ FRF    F CH V  +AS SSSSRM
Sbjct: 1   MAAVTSVSFSAIAQSFTERKSVASWSRSFSSNFDSFRFPVGGFSCHYVGVKASNSSSSRM 60

Query: 59  IIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVF 118
           +I CMSTATDVPPTV+ETK NFL  YK+PIPSIYNTVLQELIVQQHLMRYKR+Y+YDPVF
Sbjct: 61  LIHCMSTATDVPPTVSETKFNFLNSYKKPIPSIYNTVLQELIVQQHLMRYKRSYRYDPVF 120

Query: 119 ALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVE 178
           ALGFVTVYD+LM+GYPS+EDREAIFQAYI AL E+PEQYRIDA+KLE+WAR QT SSLV+
Sbjct: 121 ALGFVTVYDQLMQGYPSDEDREAIFQAYINALNEEPEQYRIDAKKLEDWARSQTPSSLVD 180

Query: 179 FPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVN 238
           F SKEGEVEG+LKDIAERA G G+FSYSRFFA+GLFRLLEL+N+TEPTVLEKLCA LN+N
Sbjct: 181 FSSKEGEVEGILKDIAERA-GNGSFSYSRFFAIGLFRLLELSNSTEPTVLEKLCAALNIN 239

Query: 239 KRSVDRDLDVYRNLLSKLLQAKELLKEYVDR 269
           KR VDRDLDVYRNLLSKL+QAKELLKEYVDR
Sbjct: 240 KRGVDRDLDVYRNLLSKLVQAKELLKEYVDR 270

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438054|ref|XP_004136805.1| PREDICTED: protein THYLAKOID FORMATION 1, chloroplastic-like [Cucumis sativus] gi|449493105|ref|XP_004159194.1| PREDICTED: protein THYLAKOID FORMATION 1, chloroplastic-like [Cucumis sativus]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/269 (77%), Positives = 237/269 (88%), Gaps = 2/269 (0%)

Query: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60
           MA++ S++F+++ Q S  R++ + S+RS  SNF GF FRTS+F H  R RAS+ SSRM+I
Sbjct: 1   MAAVNSISFSTLNQCS-DRRLLLPSSRSHSSNFHGFPFRTSVFTHYSRVRASTFSSRMVI 59

Query: 61  QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120
            CMS  TDV  TVAETK+NFLK YKRPIPSIYNTVLQELIVQQHLMRYKRTY+YDPVFAL
Sbjct: 60  HCMSAGTDVT-TVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFAL 118

Query: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180
           GFVTVYD+LMEGYPS+EDREAIFQAYI AL EDPEQYRIDA+K EEWAR QTA+SLVEF 
Sbjct: 119 GFVTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFA 178

Query: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKR 240
           S+EGEVE +LKDIAERA  KGNFSYSRFFA+GLFRLLELANATEP++LEKLCA LN++K+
Sbjct: 179 SREGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKK 238

Query: 241 SVDRDLDVYRNLLSKLLQAKELLKEYVDR 269
            VDRDLDVYRNLLSKL+QAKELLKEYVDR
Sbjct: 239 GVDRDLDVYRNLLSKLVQAKELLKEYVDR 267

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636566|gb|ACU18621.1| unknown [Glycine max]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/269 (76%), Positives = 241/269 (89%), Gaps = 1/269 (0%)

Query: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60
           MA+LTS++F+++   S +RKV +SSTR L S+ E F FRT    H V  RAS+S+S+M++
Sbjct: 1   MAALTSLSFSAVIHCS-ERKVTLSSTRFLASSSELFGFRTDFSYHYVGVRASNSASKMVV 59

Query: 61  QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120
           QCMS+ATDVPPTV+ETK+NFLK YKRPIPSIYNTVLQELIVQQHLM+YKR+Y+YDPVFAL
Sbjct: 60  QCMSSATDVPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMKYKRSYRYDPVFAL 119

Query: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180
           GFVT+YD+LMEGYPS+EDR+AIFQAYI ALKEDPEQYRIDA+KLEEWAR Q+ +SLVEF 
Sbjct: 120 GFVTIYDKLMEGYPSDEDRDAIFQAYIKALKEDPEQYRIDARKLEEWARVQSPTSLVEFS 179

Query: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKR 240
           SKEGE E +LKDIAERA GKG FSYSRFFAVGLFRL+ELANATEPT+L+KLCA LN+NKR
Sbjct: 180 SKEGEAERILKDIAERAGGKGEFSYSRFFAVGLFRLVELANATEPTILDKLCAALNINKR 239

Query: 241 SVDRDLDVYRNLLSKLLQAKELLKEYVDR 269
           SVDRDLDVYR LLSKL+QAKELLKEY+DR
Sbjct: 240 SVDRDLDVYRILLSKLVQAKELLKEYIDR 268

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124656|ref|XP_002319386.1| predicted protein [Populus trichocarpa] gi|222857762|gb|EEE95309.1| predicted protein [Populus trichocarpa]

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/269 (76%), Positives = 234/269 (86%), Gaps = 1/269 (0%)

Query: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60
           M ++TS++F+++ Q+S +R   VSS  S   +FEGFR R+   CH V  +AS+S+SR  I
Sbjct: 1   MTAITSLSFSAVNQSSSERNTFVSSLASRNLSFEGFRLRSVFSCHYVGVKASNSTSRTAI 60

Query: 61  QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120
            CMST+TDVPPTV+ETK NFLK YKRPIPSIYNTVLQELIVQQHLMRYK+TY YDPVF L
Sbjct: 61  HCMSTSTDVPPTVSETKSNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYLYDPVFGL 120

Query: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180
           G VTVYD+LMEGYPS+EDREAIFQAYI ALKEDPEQYRIDA+KLEEWAR QT SSLV+F 
Sbjct: 121 GLVTVYDQLMEGYPSDEDREAIFQAYIKALKEDPEQYRIDAKKLEEWARAQTHSSLVDFS 180

Query: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKR 240
           SKEGE+EG+LK IAERA+  GNFSYSRFFAVGLFRLLEL+NA+EPTVLEKLC+ LN+NKR
Sbjct: 181 SKEGEIEGILKGIAERAAS-GNFSYSRFFAVGLFRLLELSNASEPTVLEKLCSALNINKR 239

Query: 241 SVDRDLDVYRNLLSKLLQAKELLKEYVDR 269
           SVDRDLDVYR LLSKL+QAKELLKEYVDR
Sbjct: 240 SVDRDLDVYRGLLSKLVQAKELLKEYVDR 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485791|ref|XP_002275686.2| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Vitis vinifera]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/269 (77%), Positives = 241/269 (89%), Gaps = 2/269 (0%)

Query: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60
           MA++TS++F+++GQ+S +RKV V +TRS  S FE FRFR + +   VR  +SSSSSRM++
Sbjct: 1   MAAVTSLSFSALGQSS-ERKVPVPTTRSFASAFEAFRFRANFYAVGVRSSSSSSSSRMVV 59

Query: 61  QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120
           QCMS+ TDVP TV+ETKMNFLK YKRPIPSIYNT+LQEL+VQQHLMRYKRTY+YD VFAL
Sbjct: 60  QCMSSVTDVP-TVSETKMNFLKNYKRPIPSIYNTLLQELMVQQHLMRYKRTYRYDAVFAL 118

Query: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180
           GFVTVYD+LM+GYPS+EDR+ IFQ YI AL+EDPEQYR DAQ LEEWAR QTASSLVEF 
Sbjct: 119 GFVTVYDQLMDGYPSDEDRDIIFQVYIKALREDPEQYRKDAQMLEEWARSQTASSLVEFS 178

Query: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKR 240
           SKEGEVEG+LKDIAERA GKG+FSYSRFFA+GLFRLLELANATEPT+LEKLCA  N++KR
Sbjct: 179 SKEGEVEGILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPTILEKLCAAFNISKR 238

Query: 241 SVDRDLDVYRNLLSKLLQAKELLKEYVDR 269
           SVDRDLDVYRNLL+KL+QAKELLKEYVDR
Sbjct: 239 SVDRDLDVYRNLLTKLVQAKELLKEYVDR 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146717|ref|XP_002326111.1| predicted protein [Populus trichocarpa] gi|222862986|gb|EEF00493.1| predicted protein [Populus trichocarpa]

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/269 (76%), Positives = 239/269 (88%), Gaps = 3/269 (1%)

Query: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60
           MA++T V+F++I Q+S  R+   +  R+L   FEGFRFR+S  CH V  RAS+S+SRM+I
Sbjct: 1   MAAVTPVSFSAISQSSSDRRAFCTVARNL--GFEGFRFRSSFSCHYVGVRASNSTSRMVI 58

Query: 61  QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120
            CMST+TDVPPTVA+TK+NFLK YKRPIPSIYNTVLQELIVQQHLM+YK+T++YDPVF L
Sbjct: 59  HCMSTSTDVPPTVADTKLNFLKAYKRPIPSIYNTVLQELIVQQHLMKYKKTFRYDPVFGL 118

Query: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180
           GFVTVYD+LMEGYPS+EDREAIFQAYI AL+EDPEQYRIDA+KLEEWAR QT SSLV+F 
Sbjct: 119 GFVTVYDQLMEGYPSDEDREAIFQAYIKALEEDPEQYRIDAKKLEEWARAQTPSSLVDFS 178

Query: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKR 240
           S+EGE+EG LKDIAER +  GNFSYSRFFAVGLFRLLEL+NA+EPTVLEKLC+ LN+NKR
Sbjct: 179 SREGEIEGTLKDIAERVAS-GNFSYSRFFAVGLFRLLELSNASEPTVLEKLCSALNINKR 237

Query: 241 SVDRDLDVYRNLLSKLLQAKELLKEYVDR 269
           SVDRDLDVYR LLSKL+QA+ELLKEYVDR
Sbjct: 238 SVDRDLDVYRGLLSKLVQARELLKEYVDR 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542877|ref|XP_003539891.1| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Glycine max]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/266 (73%), Positives = 231/266 (86%), Gaps = 6/266 (2%)

Query: 4   LTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMIIQCM 63
           ++S +F+++ Q+S QR +      +L SN   FRFR    C  V  RAS+S+S+M+++C 
Sbjct: 5   ISSFSFSTLTQSSSQRNLT-----TLSSNSPTFRFRVGFSCLNVGVRASNSASKMVVRCS 59

Query: 64  STATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFV 123
           S+  + PPTV+ETK+NFLK YKRPIPSIYNTVLQELIVQQHLMRYKR+Y+YD VFALGFV
Sbjct: 60  SSVAE-PPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDAVFALGFV 118

Query: 124 TVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKE 183
           TVY++LMEGYPS+EDR+AIFQAYI ALKEDPEQYR+DA+KLEEWAR Q  +SL+EF S+E
Sbjct: 119 TVYEQLMEGYPSDEDRDAIFQAYIQALKEDPEQYRVDAKKLEEWARSQNPNSLLEFSSRE 178

Query: 184 GEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVD 243
           GEVEG+LKDIAERA GKG+FSYSRFFA+GLFRLLELANA EPT+LEKLCAVLNVNKRSVD
Sbjct: 179 GEVEGILKDIAERAGGKGDFSYSRFFAIGLFRLLELANAMEPTILEKLCAVLNVNKRSVD 238

Query: 244 RDLDVYRNLLSKLLQAKELLKEYVDR 269
           RDLDVYRNLLSKL+QAKELLKEYVDR
Sbjct: 239 RDLDVYRNLLSKLVQAKELLKEYVDR 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517586|ref|XP_003527468.1| PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Glycine max]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/270 (72%), Positives = 234/270 (86%), Gaps = 7/270 (2%)

Query: 1   MASLTS-VAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMI 59
           MA++TS  +F+++ Q+S  R ++     +L SN   FR R    CH V  RAS+S+S+++
Sbjct: 1   MATVTSSFSFSTLTQSSSPRNLS-----TLSSNSPTFRIRVGFSCHYVGVRASNSASKIV 55

Query: 60  IQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFA 119
           ++C S+A   PPTV+ETK+NFLK YKRPIPSIYNTVLQELIVQQHLMRYKR+Y+YD VFA
Sbjct: 56  VRC-SSAVAEPPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDAVFA 114

Query: 120 LGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEF 179
           LGFVTVY++LMEGYPS+EDR+AIFQAYI ALKEDPEQYR+DA+KLEEWAR Q  +SLV+F
Sbjct: 115 LGFVTVYEQLMEGYPSDEDRDAIFQAYIQALKEDPEQYRVDAKKLEEWARAQNPTSLVDF 174

Query: 180 PSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNK 239
            S+EGEVEG+LKDIAERA GKG+FSYSRFFA+GLFRLLELANA EPT+LEKLCAVLNV+K
Sbjct: 175 SSREGEVEGILKDIAERAGGKGDFSYSRFFAIGLFRLLELANAMEPTILEKLCAVLNVDK 234

Query: 240 RSVDRDLDVYRNLLSKLLQAKELLKEYVDR 269
           RSVDRDLDVYRNLLSKL+QAKELLKEYVDR
Sbjct: 235 RSVDRDLDVYRNLLSKLVQAKELLKEYVDR 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2051353	300	PSB29 "AT2G20890" [Arabidopsis	0.888	0.796	0.681	1.9e-83
UNIPROTKB|P73956	240	thf1 "Protein thf1" [Synechocy	0.669	0.75	0.340	2.1e-22

TAIR|locus:2051353 PSB29 "AT2G20890" [Arabidopsis thaliana (taxid:3702)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 167/245 (68%), Positives = 194/245 (79%)

Query:    30 VSNFEGFRFRTSLFCHCVRFRA----SSSSSRMIIQCMSTAT-DVPPTVAETKMNFLKLY 84
             +SNF   R   S    C +F      S S+S+ +I CMS  T DVPP V+ETK  FLK Y
Sbjct:    20 ISNFASSRPLASAIRICTKFSRLSLNSRSTSKSLIHCMSNVTADVPP-VSETKSKFLKAY 78

Query:    85 KRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQ 144
             KRPIPSIYNTVLQELIVQQHLMRYK+TY+YDPVFALGFVTVYD+LMEGYPS++DR+AIF+
Sbjct:    79 KRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFVTVYDQLMEGYPSDQDRDAIFK 138

Query:   145 AYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFS 204
             AYI AL EDP+QYRIDAQK+EEWAR QT++SLV+F SKEG++E +LKDIA RA  K  FS
Sbjct:   139 AYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKEGDIEAVLKDIAGRAGSKEGFS 198

Query:   205 YSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXX 264
             YSRFFAVGLFRLLELA+AT+PTVL+KLCA LN+NK+SVDRDLDVYRN             
Sbjct:   199 YSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDRDLDVYRNLLSKLVQAKELLK 258

Query:   265 EYVDR 269
             EYV+R
Sbjct:   259 EYVER 263

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010027 "thylakoid membrane organization" evidence=IEA;RCA;IMP

GO:0015979 "photosynthesis" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010319 "stromule" evidence=IDA

GO:0045037 "protein import into chloroplast stroma" evidence=IDA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=ISS;IDA

GO:0010207 "photosystem II assembly" evidence=RCA;TAS

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IPI

GO:0009527 "plastid outer membrane" evidence=IDA

GO:0009528 "plastid inner membrane" evidence=IDA

GO:0009532 "plastid stroma" evidence=IDA

GO:0010182 "sugar mediated signaling pathway" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006417 "regulation of translation" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|P73956 thf1 "Protein thf1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 64/188 (34%), Positives = 100/188 (53%)

Query:    72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
             TV++ K  F   Y RPI SIY   ++EL+V+ HL+     + YDP+FALG VT ++  M+
Sbjct:     6 TVSDAKRKFFTHYSRPISSIYRRFVEELLVEMHLLSVNIDFTYDPIFALGIVTSFNSFMQ 65

Query:   132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP-SKEGEVEGLL 190
             GY   E   AIF A    + ++P+Q R DA+ +   A      + V    S++   + LL
Sbjct:    66 GYQPAEQLPAIFNALCHGVDQNPDQVRQDAKNVAASAHHIGLDAWVTAAASEQASGDNLL 125

Query:   191 KDIAERASGKGNFSYSRFFAVGLFRLL-----ELANATEPT--VLEKLCAVLNVNKRSVD 243
              +       +  F YSR FA+GL+ LL     E+ +  E     L +L  +L+++   V 
Sbjct:   126 LNTLTGIHQRHKFKYSRLFAIGLYTLLADQDPEVKDNDEKRQDYLTRLSELLDLSLDKVV 185

Query:   244 RDLDVYRN 251
             +DLD+YR+
Sbjct:   186 KDLDLYRS 193


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      269       256   0.00086  114 3  11 22  0.42    33
                                                     32  0.48    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  177 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.85u 0.16s 23.01t   Elapsed:  00:00:01
  Total cpu time:  22.85u 0.16s 23.01t   Elapsed:  00:00:01
  Start:  Thu May  9 22:10:19 2013   End:  Thu May  9 22:10:20 2013

GO:0030096 "plasma membrane-derived thylakoid photosystem II" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SKT0	THF1_ARATH	No assigned EC number	0.6727	0.9442	0.8466	yes	no
Q7XAB8	THF1_SOLTU	No assigned EC number	0.6988	0.9814	0.9010	N/A	no
Q84PB7	THF1_ORYSJ	No assigned EC number	0.8169	0.7918	0.7421	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
PLN00047	283	PLN00047, PLN00047, photosystem II biogenesis prot	1e-154
PLN03060	206	PLN03060, PLN03060, inositol phosphatase-like prot	1e-110
pfam11264	216	pfam11264, ThylakoidFormat, Thylakoid formation pr	2e-85
PRK13266	225	PRK13266, PRK13266, Thf1-like protein; Reviewed	1e-55
TIGR03060	214	TIGR03060, PS_II_psb29, photosystem II biogenesis	4e-49

>gnl|CDD|177679 PLN00047, PLN00047, photosystem II biogenesis protein Psb29; Provisional

 Score =  431 bits (1109), Expect = e-154
 Identities = 195/269 (72%), Positives = 221/269 (82%), Gaps = 15/269 (5%)

Query: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60
           MA++ SV+F ++GQ+S  R   VS+ RS  S FE                AS S+SR ++
Sbjct: 1   MAAVCSVSFPALGQSSKARPAPVSAARSFASRFE---------------VASRSTSRRVV 45

Query: 61  QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120
            CM+  TDVPPTVAETK  FLK YKRPIPSIY+TVLQEL+VQQHLMRYK+TY+YDPVFAL
Sbjct: 46  HCMAAVTDVPPTVAETKAKFLKSYKRPIPSIYSTVLQELLVQQHLMRYKKTYRYDPVFAL 105

Query: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180
           GFVTVYD+LMEGYPS+EDR+AIF+AYI AL EDPEQYR DA KLEEWAR QT SSLV+F 
Sbjct: 106 GFVTVYDQLMEGYPSDEDRDAIFKAYIKALGEDPEQYRKDAAKLEEWARSQTGSSLVDFS 165

Query: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKR 240
           SKEGE+EG+LKDIAERA  KG FSYSRFFA+GLFRLLELANATEPT LEKLCA LN+NKR
Sbjct: 166 SKEGEIEGILKDIAERAGSKGKFSYSRFFAIGLFRLLELANATEPTALEKLCAALNINKR 225

Query: 241 SVDRDLDVYRNLLSKLLQAKELLKEYVDR 269
           SVDRDLDVYR LLSKL+QAKELLKEYV+R
Sbjct: 226 SVDRDLDVYRGLLSKLVQAKELLKEYVER 254

Length = 283

>gnl|CDD|215554 PLN03060, PLN03060, inositol phosphatase-like protein; Provisional

 Score =  316 bits (811), Expect = e-110
 Identities = 144/199 (72%), Positives = 172/199 (86%)

Query: 71  PTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLM 130
           PTVA+TK +FLK Y++PIPSIY+ V+QEL+VQQHLMRY  TY+YDP+FALGFVTVYD+LM
Sbjct: 3   PTVADTKASFLKAYRKPIPSIYSNVIQELLVQQHLMRYNATYKYDPIFALGFVTVYDQLM 62

Query: 131 EGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLL 190
           +GYP+  DR+AIF+AYI AL EDP+QYR DA+KLEEWA  Q+AS + +F S +GEVE +L
Sbjct: 63  DGYPNATDRDAIFKAYIEALGEDPDQYRKDAKKLEEWASSQSASGIADFNSGDGEVEAVL 122

Query: 191 KDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYR 250
           KDIAERA+GK  F YSRFFA+GLFRLLE A A++P VLEKL   LNV+KRSVDRDLDVYR
Sbjct: 123 KDIAERAAGKTKFHYSRFFAIGLFRLLECAKASDPAVLEKLSKALNVSKRSVDRDLDVYR 182

Query: 251 NLLSKLLQAKELLKEYVDR 269
           NLLSKL QAKEL+KEY+DR
Sbjct: 183 NLLSKLAQAKELIKEYIDR 201

Length = 206

>gnl|CDD|221050 pfam11264, ThylakoidFormat, Thylakoid formation protein

 Score =  253 bits (649), Expect = 2e-85
 Identities = 86/206 (41%), Positives = 129/206 (62%), Gaps = 8/206 (3%)

Query: 72  TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
           TV+++K  F   + RPIPS+Y  V+ EL+V+ HL+ +   ++YDP+FALG VTV+DR ME
Sbjct: 1   TVSDSKRAFHAAFPRPIPSLYRRVVDELLVELHLLSHNSDFKYDPLFALGLVTVFDRFME 60

Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPS-KEGEVEGLL 190
           GY  EE ++AIF A  ++L  DPEQ R DA++LEE A+  +   ++ + S K G     L
Sbjct: 61  GYRPEEHKDAIFNALCSSLGFDPEQLRADAEQLEEAAKSHSLEEILSWLSQKGGGAPNPL 120

Query: 191 KDIAERASGKGNFSYSRFFAVGLFRLLELANA-------TEPTVLEKLCAVLNVNKRSVD 243
           +D  +  +    F YSR FA+GLF LLE A             +L++L   L ++K  V+
Sbjct: 121 QDTLQAIASNSKFHYSRLFAIGLFTLLEEAKGDLDKDEEDLRKILKELSESLGLSKERVE 180

Query: 244 RDLDVYRNLLSKLLQAKELLKEYVDR 269
           +DLD+YR+ L K+ QAKEL++E ++ 
Sbjct: 181 KDLDLYRSNLEKMAQAKELMEETLEA 206

THF1 is localised to the outer plastid membrane and the stroma. THF1 has a role in sugar signalling. THF1 is also thought to have a role in chloroplast and leaf development. THF1 has been shown to play a crucial role in vesicle-mediated thylakoid membrane biogenesis. Length = 216

>gnl|CDD|237324 PRK13266, PRK13266, Thf1-like protein; Reviewed

 Score =  178 bits (453), Expect = 1e-55
 Identities = 82/207 (39%), Positives = 125/207 (60%), Gaps = 10/207 (4%)

Query: 68  DVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYD 127
           +   TV+++K  F   + RPI SIY  V+ EL+V+ HL+     ++YDP+FALG VTV+D
Sbjct: 2   NNRRTVSDSKRAFYAAFPRPINSIYRRVVDELLVELHLLSVNSDFKYDPLFALGLVTVFD 61

Query: 128 RLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSK--EGE 185
           R M+GY  EE +++IF A   A+  DPEQ R DA++L E A+G++   ++ + ++   GE
Sbjct: 62  RFMQGYRPEEHKDSIFNALCQAVGFDPEQLRQDAERLLELAKGKSLKEILSWLTQKALGE 121

Query: 186 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEP-------TVLEKLCAVLNVN 238
             GLL  +   A+    F YSR FA+GL+ LLE A              L+ +   L ++
Sbjct: 122 PGGLLATLLAIANNS-KFKYSRLFAIGLYTLLEEAQPDLVKDEEKLNEALKDISEGLGLS 180

Query: 239 KRSVDRDLDVYRNLLSKLLQAKELLKE 265
           K  V++DLD+YR+ L K+ QA EL++E
Sbjct: 181 KEKVEKDLDLYRSNLEKMEQALELIEE 207

Length = 225

>gnl|CDD|213765 TIGR03060, PS_II_psb29, photosystem II biogenesis protein Psp29

 Score =  161 bits (409), Expect = 4e-49
 Identities = 75/204 (36%), Positives = 121/204 (59%), Gaps = 8/204 (3%)

Query: 69  VPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDR 128
              TV+++K  F   + R IP +Y  V+ EL+V+ HL+ ++  ++YDP+FALG VTV+DR
Sbjct: 3   ERRTVSDSKRAFHAAFPRVIPPLYRRVVDELLVELHLLSHQSDFKYDPLFALGLVTVFDR 62

Query: 129 LMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEG 188
            MEGY  EE  +A+F A   +   DPEQ R DA++L E A+G+    ++ + ++      
Sbjct: 63  FMEGYRPEEHLDALFDALCNSNGFDPEQLREDAKQLLEQAKGKGLDEILSWLTQANL-SN 121

Query: 189 LLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEP-------TVLEKLCAVLNVNKRS 241
              D  +  +G+  F YSR FA+GL+ LLE A   +         +L++L   L ++   
Sbjct: 122 GGGDTLQGIAGRHKFKYSRLFAIGLYSLLEEAAPDKDIDEEDLNEILKELSEALGLSYDR 181

Query: 242 VDRDLDVYRNLLSKLLQAKELLKE 265
           V++DLD+Y++ L K+ QA EL++E
Sbjct: 182 VEKDLDLYKSNLEKMKQALELMEE 205

Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function [Energy metabolism, Photosynthesis]. Length = 214

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
PLN00047	283	photosystem II biogenesis protein Psb29; Provision	100.0
PLN03060	206	inositol phosphatase-like protein; Provisional	100.0
PRK13266	225	Thf1-like protein; Reviewed	100.0
PF11264	216	ThylakoidFormat: Thylakoid formation protein; Inte	100.0
TIGR03060	214	PS_II_psb29 photosystem II biogenesis protein Psp2	100.0
PF11264	216	ThylakoidFormat: Thylakoid formation protein; Inte	94.47
PRK13266	225	Thf1-like protein; Reviewed	94.26
TIGR03060	214	PS_II_psb29 photosystem II biogenesis protein Psp2	93.97
PLN03060	206	inositol phosphatase-like protein; Provisional	92.5
PLN00047	283	photosystem II biogenesis protein Psb29; Provision	90.16

>PLN00047 photosystem II biogenesis protein Psb29; Provisional

Probab=100.00  E-value=2e-101  Score=709.29  Aligned_cols=254  Identities=74%  Similarity=1.138  Sum_probs=242.0

Q ss_pred             CCccccccccccccccccccccccccccccccccccccccccceeeeeeeecCCCccceeeeeccCCCCCCchhHhHHHH
Q 024283            1 MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMIIQCMSTATDVPPTVAETKMNF   80 (269)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TVSDTKr~F   80 (269)
                      |||++|+||++++|++  ++++..++|+++   .+|+|+         +|++++ +|+||+||+++++++||||||||+|
T Consensus         1 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~TVSDTKr~F   65 (283)
T PLN00047          1 MAAVCSVSFPALGQSS--KARPAPVSAARS---FASRFE---------VASRST-SRRVVHCMAAVTDVPPTVAETKAKF   65 (283)
T ss_pred             CccccccChHhhcccc--cccCCccchhhh---hccccc---------cccccc-cceeeeehhhccCCCCcHHHHHHHH
Confidence            8999999999999997  666666667775   667776         676654 5999999999999999999999999


Q ss_pred             HhhCCCcCCcchhHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCHHHHHHH
Q 024283           81 LKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRID  160 (269)
Q Consensus        81 ~~~y~rPI~sIYrrvv~ELLVE~HLLs~n~~F~YDplFALG~VTvFd~fm~GY~peed~~~IF~Alc~Alg~Dp~qyR~d  160 (269)
                      |++|||||||||||||||||||||||+||++|+|||||||||||+||+||+||||++|+++||+|||+|+|+||+|||+|
T Consensus        66 ~~~yp~pIpsiYrrvvdELLVElHLLs~n~~F~yDplFALGlVtvfd~fm~GY~Pee~~~~IF~Alc~a~g~Dp~qyr~d  145 (283)
T PLN00047         66 LKSYKRPIPSIYSTVLQELLVQQHLMRYKKTYRYDPVFALGFVTVYDQLMEGYPSDEDRDAIFKAYIKALGEDPEQYRKD  145 (283)
T ss_pred             HHhCCCCCcHHHHHHHHHHHHHHHHHHhccCceeCchhhhhhHHHHHHHHccCCChHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCccccccccCCcchhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCCCCHHHHHHHHHhcCCChh
Q 024283          161 AQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKR  240 (269)
Q Consensus       161 A~~l~~~A~~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~~~~~d~~~l~~l~~~Lgls~e  240 (269)
                      |++|++||+|++.+|+++|+...|++++.|++||+++++|++||||||||||||+|||.++++||+++++||++|||+++
T Consensus       146 A~~l~~~A~~~s~~~l~~~l~~~~~l~~~l~~IA~~a~~~~~f~YSRlfAIGLf~LLe~a~~~d~~~l~~l~e~Lgls~~  225 (283)
T PLN00047        146 AAKLEEWARSQTGSSLVDFSSKEGEIEGILKDIAERAGSKGKFSYSRFFAIGLFRLLELANATEPTALEKLCAALNINKR  225 (283)
T ss_pred             HHHHHHHHhcCCHHHHHHHHhcchHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHcCCCHH
Confidence            99999999999999999999999999999999998887899999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHhhHHHHHHHHHHHHHHhcC
Q 024283          241 SVDRDLDVYRNLLSKLLQAKELLKEYVDR  269 (269)
Q Consensus       241 kv~KDL~lYrsnLeKmaQA~elmeE~ler  269 (269)
                      ||+|||+|||||||||+||+|||||+++|
T Consensus       226 kv~KDLdlYrsnLeKm~QA~elmeE~~~~  254 (283)
T PLN00047        226 SVDRDLDVYRGLLSKLVQAKELLKEYVER  254 (283)
T ss_pred             HHHhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999975

>PLN03060 inositol phosphatase-like protein; Provisional

Probab=100.00  E-value=7.6e-91  Score=617.11  Aligned_cols=200  Identities=72%  Similarity=1.163  Sum_probs=195.6

Q ss_pred             CCchhHhHHHHHhhCCCcCCcchhHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 024283           70 PPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITA  149 (269)
Q Consensus        70 ~~TVSDTKr~F~~~y~rPI~sIYrrvv~ELLVE~HLLs~n~~F~YDplFALG~VTvFd~fm~GY~peed~~~IF~Alc~A  149 (269)
                      +||||||||+||++|||||||||||||||||||||||+||++|+|||||||||||+||+||+||||++|+++||+|||+|
T Consensus         2 ~~TVsDtKr~F~~~~p~pI~siYrrvv~ELLVE~HLl~~n~~f~yD~lfAlGlvt~fd~fm~GY~Pee~~~~IF~Alc~a   81 (206)
T PLN03060          2 VPTVADTKASFLKAYRKPIPSIYSNVIQELLVQQHLMRYNATYKYDPIFALGFVTVYDQLMDGYPNATDRDAIFKAYIEA   81 (206)
T ss_pred             CCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhccCceeCchHHhhHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHhcCCccccccccCCcchhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCCCCHHHHH
Q 024283          150 LKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLE  229 (269)
Q Consensus       150 lg~Dp~qyR~dA~~l~~~A~~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~~~~~d~~~l~  229 (269)
                      +|+||+|||+||+++++||+|++.++|.+|++++|+.+..|+++++++++|++||||||||||||+|||.++++||++++
T Consensus        82 ~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~f~YSRl~AIGL~~LLe~a~~~d~~~l~  161 (206)
T PLN03060         82 LGEDPDQYRKDAKKLEEWASSQSASGIADFNSGDGEVEAVLKDIAERAAGKTKFHYSRFFAIGLFRLLECAKASDPAVLE  161 (206)
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhcccccchHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            99999999999999999999999999999999988888888888888889999999999999999999999989999999


Q ss_pred             HHHHhcCCChhhhhhhHHHHHhhHHHHHHHHHHHHHHhcC
Q 024283          230 KLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDR  269 (269)
Q Consensus       230 ~l~~~Lgls~ekv~KDL~lYrsnLeKmaQA~elmeE~ler  269 (269)
                      +||++|||+++||+|||++||||||||+||+|||||++++
T Consensus       162 ~l~~~L~ls~~kv~kDL~lYrsnLeKm~qa~el~ee~~~~  201 (206)
T PLN03060        162 KLSKALNVSKRSVDRDLDVYRNLLSKLAQAKELIKEYIDR  201 (206)
T ss_pred             HHHHHcCCCHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999974

>PRK13266 Thf1-like protein; Reviewed

Probab=100.00  E-value=1.7e-88  Score=608.70  Aligned_cols=201  Identities=40%  Similarity=0.722  Sum_probs=188.5

Q ss_pred             CCCCchhHhHHHHHhhCCCcCCcchhHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHhcCCCCchhHHHHHHHHH
Q 024283           68 DVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYI  147 (269)
Q Consensus        68 ~~~~TVSDTKr~F~~~y~rPI~sIYrrvv~ELLVE~HLLs~n~~F~YDplFALG~VTvFd~fm~GY~peed~~~IF~Alc  147 (269)
                      +++||||||||+||++|||||||||||||||||||||||+||++|+|||||||||||+||+||+||||++|+++||+|||
T Consensus         2 ~~~~TVSDtKr~F~~~~p~pI~siYrrvv~ELLVElHLl~~n~~F~yDplfAlGlvt~fd~fm~GY~Pee~~~~IF~Alc   81 (225)
T PRK13266          2 NNRRTVSDSKRAFYAAFPRPINSIYRRVVDELLVELHLLSVNSDFKYDPLFALGLVTVFDRFMQGYRPEEHKDSIFNALC   81 (225)
T ss_pred             CCCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhccCceeCchHHhhHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCc--chhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCC---
Q 024283          148 TALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKE--GEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANA---  222 (269)
Q Consensus       148 ~Alg~Dp~qyR~dA~~l~~~A~~~s~~~l~~~~~~~--g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~~~~---  222 (269)
                      +|+|+||+|||+||++|++||+|++.++|.+|++++  |+++.+++.++ .+++|++||||||||||||+|||.+++   
T Consensus        82 ~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~~~~~~~~l~~~l~-~ia~~~~f~YSRl~AIGL~~LLe~a~~~~~  160 (225)
T PRK13266         82 QAVGFDPEQLRQDAERLLELAKGKSLKEILSWLTQKALGEPGGLLATLL-AIANNSKFKYSRLFAIGLYTLLEEAQPDLV  160 (225)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhccccccchhHHHHHH-HHhcCCCCchHHHHHHHHHHHHHhcCcccc
Confidence            999999999999999999999999999999999964  45555555554 455699999999999999999999987   


Q ss_pred             CCH----HHHHHHHHhcCCChhhhhhhHHHHHhhHHHHHHHHHHHHHHhcC
Q 024283          223 TEP----TVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDR  269 (269)
Q Consensus       223 ~d~----~~l~~l~~~Lgls~ekv~KDL~lYrsnLeKmaQA~elmeE~ler  269 (269)
                      +||    +++++||++||||++||+|||+|||||||||+||+|||||++++
T Consensus       161 ~d~~~~~~~l~~l~~~L~ls~~kv~KDL~lYrsnLeKm~Qa~el~ee~~~~  211 (225)
T PRK13266        161 KDEEKLNEALKDISEGLGLSKEKVEKDLDLYRSNLEKMEQALELIEETLEA  211 (225)
T ss_pred             cCHHHHHHHHHHHHHHcCCCHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            466    59999999999999999999999999999999999999999974

>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp

Probab=100.00  E-value=1.3e-88  Score=606.52  Aligned_cols=198  Identities=52%  Similarity=0.890  Sum_probs=189.0

Q ss_pred             chhHhHHHHHhhCCCcCCcchhHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 024283           72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALK  151 (269)
Q Consensus        72 TVSDTKr~F~~~y~rPI~sIYrrvv~ELLVE~HLLs~n~~F~YDplFALG~VTvFd~fm~GY~peed~~~IF~Alc~Alg  151 (269)
                      |||||||+||++|||||||||||||||||||||||+||++|+|||||||||||+||+||+||||++|+++||+|||+|+|
T Consensus         1 TVsDtKr~F~~~~~~pI~siYrrvv~ELLVe~HLl~~n~~F~yD~lfalG~vt~fd~fm~GY~p~~~~~~If~Alc~a~~   80 (216)
T PF11264_consen    1 TVSDTKRAFYKAFPRPIPSIYRRVVDELLVELHLLSVNKDFQYDPLFALGLVTVFDRFMQGYPPEEDKDSIFNALCQALG   80 (216)
T ss_pred             ChhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCceeCchHHhhHHHHHHHHhcCCCChhHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhcCCccccccccCC-cchhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCC-------C
Q 024283          152 EDPEQYRIDAQKLEEWARGQTASSLVEFPSK-EGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANA-------T  223 (269)
Q Consensus       152 ~Dp~qyR~dA~~l~~~A~~~s~~~l~~~~~~-~g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~~~~-------~  223 (269)
                      +||+|||+||+++++||+|+|.++|.+|+++ .++.++.|++++.+|++|++||||||||||||+|||.+++       .
T Consensus        81 ~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~~~~~~~l~~~~~~ia~~~~f~YSRl~AIGL~~LLe~a~~~~~~~~~~  160 (216)
T PF11264_consen   81 FDPEQYRQDAEKLEEWAKGKSIEDLLSWLSQKGGEGDNPLAAILQAIASNPKFKYSRLFAIGLFRLLELAGADLVKDEEK  160 (216)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccchHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCcccccChhh
Confidence            9999999999999999999999999999986 4566677777777778899999999999999999999988       3


Q ss_pred             CHHHHHHHHHhcCCChhhhhhhHHHHHhhHHHHHHHHHHHHHHhcC
Q 024283          224 EPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDR  269 (269)
Q Consensus       224 d~~~l~~l~~~Lgls~ekv~KDL~lYrsnLeKmaQA~elmeE~ler  269 (269)
                      +++++++||++||||++||+|||++||||||||+||+|||||+++|
T Consensus       161 ~~~~l~~l~~~l~ls~~kv~kDL~lYrsnLeKm~qA~el~ee~~~~  206 (216)
T PF11264_consen  161 RPEALEKLSEALGLSKEKVEKDLDLYRSNLEKMAQAKELMEEILEA  206 (216)
T ss_pred             HHHHHHHHHHHcCCCHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999999874

(strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II

>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29

Probab=100.00  E-value=1.6e-88  Score=605.12  Aligned_cols=198  Identities=39%  Similarity=0.682  Sum_probs=185.7

Q ss_pred             CCCCchhHhHHHHHhhCCCcCCcchhHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHhcCCCCchhHHHHHHHHH
Q 024283           68 DVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYI  147 (269)
Q Consensus        68 ~~~~TVSDTKr~F~~~y~rPI~sIYrrvv~ELLVE~HLLs~n~~F~YDplFALG~VTvFd~fm~GY~peed~~~IF~Alc  147 (269)
                      +++||||||||+||++|||||||||||||||||||||||+||++|+|||||||||||+||+||+||||++|+++||+|||
T Consensus         2 ~~~~TVSDtKr~F~~~~p~pI~siYrrvv~ELLVElHLl~~n~~F~yDplfAlGlvt~fd~fm~GY~Pee~~~~IF~Alc   81 (214)
T TIGR03060         2 TERRTVSDSKRAFHAAFPRVIPPLYRRVVDELLVELHLLSHQSDFKYDPLFALGLVTVFDRFMEGYRPEEHLDALFDALC   81 (214)
T ss_pred             CCCCcHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhccCceeCchHHhhHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCcch--hHH-HHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCCC-
Q 024283          148 TALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGE--VEG-LLKDIAERASGKGNFSYSRFFAVGLFRLLELANAT-  223 (269)
Q Consensus       148 ~Alg~Dp~qyR~dA~~l~~~A~~~s~~~l~~~~~~~g~--~~~-~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~~~~~-  223 (269)
                      +|+|+||+|||+||+++++||+|++.++|.+|+++.|+  .+. +|++||    +|++||||||||||||+|||.+++. 
T Consensus        82 ~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~~~~~~~~l~l~~ia----~n~~f~YSRl~AIGL~~LLe~a~~~~  157 (214)
T TIGR03060        82 NSNGFDPEQLREDAKQLLEQAKGKGLDEILSWLTQANLSNGGGDTLQGIA----GRHKFKYSRLFAIGLYSLLEEAAPDK  157 (214)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhccccCCcchhHHHHHh----cCCCcchHHHHHHHHHHHHHhcCccc
Confidence            99999999999999999999999999999999987543  222 566665    5999999999999999999999863 


Q ss_pred             --C----HHHHHHHHHhcCCChhhhhhhHHHHHhhHHHHHHHHHHHHHHhcC
Q 024283          224 --E----PTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDR  269 (269)
Q Consensus       224 --d----~~~l~~l~~~Lgls~ekv~KDL~lYrsnLeKmaQA~elmeE~ler  269 (269)
                        |    ++++++||++||||.+||+|||+|||||||||+||+|||||++++
T Consensus       158 ~~d~~~~~~~l~~l~~~L~ls~~kv~KDL~lYrsnLeKm~Qa~el~ee~~~~  209 (214)
T TIGR03060       158 DIDEEDLNEILKELSEALGLSYDRVEKDLDLYKSNLEKMKQALELMEETLEA  209 (214)
T ss_pred             ccCHHHHHHHHHHHHHHcCCCHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence              4    459999999999999999999999999999999999999999974

Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.

>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp

Probab=94.47  E-value=0.051  Score=49.74  Aligned_cols=56  Identities=20%  Similarity=0.294  Sum_probs=47.3

Q ss_pred             hcccccccccccchhhHHHHHHHHhc-CCCCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 024283          106 MRYKRTYQYDPVFALGFVTVYDRLME-GYPSEEDREAIFQAYITALKEDPEQYRIDA  161 (269)
Q Consensus       106 Ls~n~~F~YDplFALG~VTvFd~fm~-GY~peed~~~IF~Alc~Alg~Dp~qyR~dA  161 (269)
                      ..-|..|.|.-+||+|+.+..+.--- .-..++.+..+.+.||+++|+.++.+.+|-
T Consensus       127 ia~~~~f~YSRl~AIGL~~LLe~a~~~~~~~~~~~~~~l~~l~~~l~ls~~kv~kDL  183 (216)
T PF11264_consen  127 IASNPKFKYSRLFAIGLFRLLELAGADLVKDEEKRPEALEKLSEALGLSKEKVEKDL  183 (216)
T ss_pred             HhcCCCCchHHHHHHHHHHHHHhcCcccccChhhHHHHHHHHHHHcCCCHHHHHhhH
Confidence            34578999999999999999987654 244567888899999999999999999885

(strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II

>PRK13266 Thf1-like protein; Reviewed

Probab=94.26  E-value=0.089  Score=48.49  Aligned_cols=63  Identities=17%  Similarity=0.292  Sum_probs=50.9

Q ss_pred             HHHHHhhhcccccccccccchhhHHHHHHHHhcC-CCCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 024283           99 LIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEG-YPSEEDREAIFQAYITALKEDPEQYRIDA  161 (269)
Q Consensus        99 LLVE~HLLs~n~~F~YDplFALG~VTvFd~fm~G-Y~peed~~~IF~Alc~Alg~Dp~qyR~dA  161 (269)
                      |+-.++=..-|..|.|.-+||+|+.+..+.---. ...++++..+...+|.++|+..+.+.+|-
T Consensus       125 l~~~l~~ia~~~~f~YSRl~AIGL~~LLe~a~~~~~~d~~~~~~~l~~l~~~L~ls~~kv~KDL  188 (225)
T PRK13266        125 LLATLLAIANNSKFKYSRLFAIGLYTLLEEAQPDLVKDEEKLNEALKDISEGLGLSKEKVEKDL  188 (225)
T ss_pred             HHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHcCCCHHHHHhhH
Confidence            3334444557899999999999999999876542 45666889999999999999999998884

>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29

Probab=93.97  E-value=0.071  Score=48.81  Aligned_cols=58  Identities=19%  Similarity=0.301  Sum_probs=48.1

Q ss_pred             HhhhcccccccccccchhhHHHHHHHHhcCC--CCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 024283          103 QHLMRYKRTYQYDPVFALGFVTVYDRLMEGY--PSEEDREAIFQAYITALKEDPEQYRIDA  161 (269)
Q Consensus       103 ~HLLs~n~~F~YDplFALG~VTvFd~fm~GY--~peed~~~IF~Alc~Alg~Dp~qyR~dA  161 (269)
                      ++=..-|..|.|.-+||+|+.+..+. .+|.  ..++++..+.+.+|+++|+..+.+.+|-
T Consensus       127 l~~ia~n~~f~YSRl~AIGL~~LLe~-a~~~~~~d~~~~~~~l~~l~~~L~ls~~kv~KDL  186 (214)
T TIGR03060       127 LQGIAGRHKFKYSRLFAIGLYSLLEE-AAPDKDIDEEDLNEILKELSEALGLSYDRVEKDL  186 (214)
T ss_pred             HHHHhcCCCcchHHHHHHHHHHHHHh-cCcccccCHHHHHHHHHHHHHHcCCCHHHHHhhH
Confidence            34445789999999999999999984 4543  4567788999999999999999988884

Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.

>PLN03060 inositol phosphatase-like protein; Provisional

Probab=92.50  E-value=0.48  Score=43.28  Aligned_cols=47  Identities=13%  Similarity=0.387  Sum_probs=39.0

Q ss_pred             CCCCcchhhHHHHHHHHHhh-cCCC----C-HHHHHHHHHhcCCChhhhhhhH
Q 024283          200 KGNFSYSRFFAVGLFRLLEL-ANAT----E-PTVLEKLCAVLNVNKRSVDRDL  246 (269)
Q Consensus       200 n~~F~YSRlfAIGLf~LLE~-~~~~----d-~~~l~~l~~~Lgls~ekv~KDL  246 (269)
                      |..|.|.-+||+||.+..+. ....    + ....+.||+++|+.++.+.+|-
T Consensus        41 n~~f~yD~lfAlGlvt~fd~fm~GY~Pee~~~~IF~Alc~a~~~dp~~~r~dA   93 (206)
T PLN03060         41 NATYKYDPIFALGFVTVYDQLMDGYPNATDRDAIFKAYIEALGEDPDQYRKDA   93 (206)
T ss_pred             ccCceeCchHHhhHHHHHHHHHcCCCChHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            89999999999999999943 3332    2 3479999999999999988886

>PLN00047 photosystem II biogenesis protein Psb29; Provisional

Probab=90.16  E-value=0.99  Score=43.09  Aligned_cols=47  Identities=15%  Similarity=0.377  Sum_probs=39.0

Q ss_pred             CCCCcchhhHHHHHHHHHhh-cCCC----C-HHHHHHHHHhcCCChhhhhhhH
Q 024283          200 KGNFSYSRFFAVGLFRLLEL-ANAT----E-PTVLEKLCAVLNVNKRSVDRDL  246 (269)
Q Consensus       200 n~~F~YSRlfAIGLf~LLE~-~~~~----d-~~~l~~l~~~Lgls~ekv~KDL  246 (269)
                      |..|.|.-+||+||.+..+. ....    | ....+.+|+++|+.++.+.+|-
T Consensus        94 n~~F~yDplFALGlVtvfd~fm~GY~Pee~~~~IF~Alc~a~g~Dp~qyr~dA  146 (283)
T PLN00047         94 KKTYRYDPVFALGFVTVYDQLMEGYPSDEDRDAIFKAYIKALGEDPEQYRKDA  146 (283)
T ss_pred             ccCceeCchhhhhhHHHHHHHHccCCChHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            89999999999999999943 3332    2 3479999999999999988886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
3g80_A	97	Protein B2; RNA-binding, viral protein, suppressor	82.84

>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}

Probab=82.84  E-value=1.6  Score=34.48  Aligned_cols=28  Identities=21%  Similarity=0.353  Sum_probs=24.9

Q ss_pred             HhcCCChhhhhhhHHHHHhhHHHHHHHH
Q 024283          233 AVLNVNKRSVDRDLDVYRNLLSKLLQAK  260 (269)
Q Consensus       233 ~~Lgls~ekv~KDL~lYrsnLeKmaQA~  260 (269)
                      .+|....++|.|||+-|+.-|.|++|-.
T Consensus        49 ~sl~~qDpnV~kDLdn~~acL~k~~~t~   76 (97)
T 3g80_A           49 QTLMIADPNVNKDLRAFCEFLTVQHQRA   76 (97)
T ss_dssp             HTCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccccCchHHHHHHHHHHHHHHHHHHH
Confidence            5677889999999999999999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00