Citrus Sinensis ID: 024343

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MAVTVSASILKSSSARVHMLLSSFSPAASFRTPPQLPLLRSSPITTITRTDRALLLLRPHHPKTSSFCTSPITNANAETTTTSESLPRPAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS
Secondary Structure (PSIPRED)
cEEHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEcEEEEEEEEEEEcccccccEEEEEEEcccccEEEEEccccccccccccccEEEEEEEccccccccccccEEEEEEEccccccEEEEccccccccccEEEEcccccccccccccccccccccHHHHHHccccEEcccEEEEEccEEEEEccccEEEccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEcccccccEEccccccccccccccccccHHHHccHHHHHHHHHHHHHHccccccHHccccccccccHcccHHHcccccccccccccccccccccEccEEEEEEEEEEEcccccccEEEEEEccccccEEEEEcccccccHHHccccEEEEEcccccEEEccEEEccEEcEEEccccEEEEEcEcccccccccEcEccccccccccccccccccccHHHHHHHHccccccccccEEEEcccEcEccccEEEEccccccccc
Coil and Loop (DISEMBL)
MAVTVSASILKSSSARVHMLLSsfspaasfrtppqlpllrsspittitrTDRALLllrphhpktssfctspitnanaettttseslprpavednsvnvkdAANMLDIRVGRIIKAWRheeadslyveevdvgeaepriicsglvkyvpleflqdRSVVVLAnlkprnmrgvkshgMLLAASDAahenvelleppqgsvpgeriwfgsqedkenqpapaspnqvQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS
Flexible Loop (DISEMBL)
MAVTVSASILKSSSARVHMLLSSFSPaasfrtppqlpllrsspittITRTDRALLLLRPhhpktssfctspitnANAEttttseslprpavednsvnvkdaanmlDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQtsagavmsrslknanis
Low Complexity Region (SEG)
MAVTVSASILKSSSARVHMLLSSFSPAASFRTPPQLPLLRSSPITTITRTDRALLLLRPHHPKTSSFCTSPItnanaettttsesLPRPAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS
Disordered region (IsUnstruct)
*******************************************ITTITRTDRALLLLR****************************************KDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGV****ML**************************************************IWELVQPHLKTDASLVAMLGEH********************
Disordered Region (DISOPRED)
MAVTVSASILKSSSARVHMLLSSFSPAASFRTPPQLPLLRSSPITTITRTDR***********************************************DAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDK***************KIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANI*
Disordered Region (DISEMBL)
********ILKSSSARVHMLLSSFSPAASFRTPPQLPLLRSSPITTITRTDRALLLLRPHHPKTSSFCTSPITNANA************AVEDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQ***************QKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS
Disordered Region (DISPRO)
MAVTVSASILKSSSARVHMLLSSFSPAASFRTPPQLPLLRSSPITTITRTDRALLLLR*****************************************DAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVTVSASILKSSSARVHMLLSSFSPAASFRTPPQLPLLRSSPITTITRTDRALLLLRPHHPKTSSFCTSPITNANAETTTTSESLPRPAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q29465	528	Tyrosine--tRNA ligase, cy	yes	no	0.579	0.295	0.5	3e-37
Q5R8T5	528	Tyrosine--tRNA ligase, cy	yes	no	0.579	0.295	0.494	1e-36
Q4KM49	528	Tyrosine--tRNA ligase, cy	yes	no	0.579	0.295	0.5	4e-36
P31230	310	Aminoacyl tRNA synthase c	yes	no	0.579	0.503	0.491	5e-36
P54577	528	Tyrosine--tRNA ligase, cy	yes	no	0.579	0.295	0.488	6e-36
Q91WQ3	528	Tyrosine--tRNA ligase, cy	yes	no	0.579	0.295	0.494	6e-36
O54873	359	Aminoacyl tRNA synthase c	no	no	0.568	0.426	0.482	1e-35
Q9ZTS1	801	Probable methionine--tRNA	no	no	0.587	0.197	0.493	1e-34
Q7ZX51	528	Tyrosine--tRNA ligase, cy	N/A	no	0.773	0.393	0.395	7e-34
Q12904	312	Aminoacyl tRNA synthase c	no	no	0.568	0.490	0.476	1e-33

>sp|Q29465|SYYC_BOVIN Tyrosine--tRNA ligase, cytoplasmic OS=Bos taurus GN=YARS PE=2 SV=4

 Score =  155 bits (392), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 85/170 (50%), Positives = 109/170 (64%), Gaps = 14/170 (8%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           LDIRVG++I   +H +ADSLYVE++DVGEAEPR + SGLV++VP E LQDR VVVL NLK
Sbjct: 368 LDIRVGKVISVDKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 427

Query: 165 PRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQE----DKENQPAPAS 219
           P+ MRGVKS GMLL AS +  +  VE L+PP GS PGER++    E    D+E +P    
Sbjct: 428 PQKMRGVKSQGMLLCASVEGVNRKVEPLDPPAGSAPGERVFVKGYEKGQPDEELKP---- 483

Query: 220 PNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
                KKK++E +Q   K     +A   +    T  G+V  +SLK  NIS
Sbjct: 484 -----KKKVFEKLQADFKISDEYIAQWKQTNFMTKMGSVSCKSLKGGNIS 528

Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).
Bos taurus (taxid: 9913)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1

>sp|Q5R8T5|SYYC_PONAB Tyrosine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=YARS PE=2 SV=3

 Score =  153 bits (387), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 109/170 (64%), Gaps = 14/170 (8%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           LDIRVG+II   +H +ADSLYVE++DVGEAEPR + SGLV++VP E LQDR VVVL NLK
Sbjct: 368 LDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 427

Query: 165 PRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQE----DKENQPAPAS 219
           P+ MRGV+S GMLL AS +  +  VE L+PP GS PGER++    E    D+E +P    
Sbjct: 428 PQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGERVFVKGYEKGQPDEELKP---- 483

Query: 220 PNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
                KKK++E +Q   K     +A   +    T  G++  +SLK  NIS
Sbjct: 484 -----KKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS 528

Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q4KM49|SYYC_RAT Tyrosine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Yars PE=2 SV=3

 Score =  151 bits (382), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 85/170 (50%), Positives = 106/170 (62%), Gaps = 14/170 (8%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           LDIRVG+I+   +H +ADSLYVE++DVGEAEPR + SGLV++VP E LQDR VVVL NLK
Sbjct: 368 LDIRVGKILSVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 427

Query: 165 PRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQE----DKENQPAPAS 219
           P+ MRGV S GMLL AS +     VE L+PP GS PGER++    E    D+E +P    
Sbjct: 428 PQKMRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKP---- 483

Query: 220 PNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
                KKK++E +Q   K     VA   +    T  G V  +SLK  NIS
Sbjct: 484 -----KKKVFEKLQADFKISDDCVAQWKQTNFMTKLGFVSCKSLKGGNIS 528

Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P31230|AIMP1_MOUSE Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Mus musculus GN=Aimp1 PE=1 SV=2

 Score =  151 bits (381), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 84/171 (49%), Positives = 109/171 (63%), Gaps = 15/171 (8%)

Query: 102 ANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLA 161
           A+ LD+R+G I+ A +H +ADSLYVEEVDVGEA PR + SGLV +VPLE +Q+R VV+L 
Sbjct: 150 ASRLDLRIGCIVTAKKHPDADSLYVEEVDVGEAAPRTVVSGLVNHVPLEQMQNRMVVLLC 209

Query: 162 NLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGS---QEDKENQPAPA 218
           NLKP  MRGV S  M++ AS  + E VE+L PP GSVPG+RI F +   + DKE  P   
Sbjct: 210 NLKPAKMRGVLSQAMVMCAS--SPEKVEILAPPNGSVPGDRITFDAFPGEPDKELNP--- 264

Query: 219 SPNQVQKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLKNANI 268
                 KKKIWE +QP L T+A  VA   G        G   ++++ N+ I
Sbjct: 265 ------KKKIWEQIQPDLHTNAECVATYKGAPFEVKGKGVCRAQTMANSGI 309

Non-catalytic component of the multisynthase complex. Stimulates the catalytic activity of cytoplasmic arginyl-tRNA synthase. Binds tRNA. Possesses inflammatory cytokine activity. Negatively regulates TGF-beta signaling through stabilization of SMURF2 by binding to SMURF2 and inhibiting its SMAD7-mediated degradation. Involved in glucose homeostasis through induction of glucagon secretion at low glucose levels. Promotes dermal fibroblast proliferation and wound repair. Regulates KDELR1-mediated retention of HSP90B1/gp96 in the endoplasmic reticulum. Plays a role in angiogenesis by inducing endothelial cell migration at low concentrations and endothelian cell apoptosis at high concentrations. Induces maturation of dendritic cells and monocyte cell adhesion. Modulates endothelial cell responses by degrading HIF-1A through interaction with PSMA7.

Mus musculus (taxid: 10090)

>sp|P54577|SYYC_HUMAN Tyrosine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=YARS PE=1 SV=4

 Score =  151 bits (381), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 108/170 (63%), Gaps = 14/170 (8%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           LDIRVG+II   +H +ADSLYVE++DVGEAEPR + SGLV++VP E LQDR VVVL NLK
Sbjct: 368 LDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 427

Query: 165 PRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQE----DKENQPAPAS 219
           P+ MRGV+S GMLL AS +  +  VE L+PP GS PGE ++    E    D+E +P    
Sbjct: 428 PQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKP---- 483

Query: 220 PNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
                KKK++E +Q   K     +A   +    T  G++  +SLK  NIS
Sbjct: 484 -----KKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS 528

Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q91WQ3|SYYC_MOUSE Tyrosine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Yars PE=2 SV=3

 Score =  151 bits (381), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 84/170 (49%), Positives = 106/170 (62%), Gaps = 14/170 (8%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           LDIRVG+I+   +H +ADSLYVE++DVGEAEPR + SGLV++VP E LQDR VVVL NLK
Sbjct: 368 LDIRVGKILSVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 427

Query: 165 PRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQE----DKENQPAPAS 219
           P+ MRGV S GMLL AS +     VE L+PP GS PGER++    E    D+E +P    
Sbjct: 428 PQKMRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKP---- 483

Query: 220 PNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
                KKK++E +Q   K     +A   +    T  G V  +SLK  NIS
Sbjct: 484 -----KKKVFEKLQADFKISEECIAQWKQTNFMTKLGFVSCKSLKGGNIS 528

Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|O54873|AIMP1_CRIGR Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Cricetulus griseus GN=AIMP1 PE=2 SV=1

 Score =  150 bits (378), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/168 (48%), Positives = 107/168 (63%), Gaps = 15/168 (8%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           LD+R+GRI+   +H +ADSLYVEEVDVGEA PR + SGLV +VPL+ +Q+R VV+L NLK
Sbjct: 202 LDLRIGRIVTVKKHPDADSLYVEEVDVGEAAPRTVISGLVNHVPLDQMQNRMVVLLCNLK 261

Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGS---QEDKENQPAPASPN 221
           P  MRG+ S  M++ AS  + E VE+L PP GSVPG+RI F +   + DKE  P      
Sbjct: 262 PAKMRGILSQAMVMCAS--SPEKVEILAPPNGSVPGDRITFDAFPGEPDKELNP------ 313

Query: 222 QVQKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLKNANI 268
              KKKIWE +QP L T+A  VA   G        G   ++++ N+ I
Sbjct: 314 ---KKKIWEQIQPDLHTNAECVATYKGSPFEVKGKGVCRAQTMANSGI 358

Non-catalytic component of the multisynthase complex. Stimulates the catalytic activity of cytoplasmic arginyl-tRNA synthase. Binds tRNA. Possesses inflammatory cytokine activity. Negatively regulates TGF-beta signaling through stabilization of SMURF2 by binding to SMURF2 and inhibiting its SMAD7-mediated degradation. Involved in glucose homeostasis through induction of glucagon secretion at low glucose levels. Promotes dermal fibroblast proliferation and wound repair. Regulates KDELR1-mediated retention of HSP90B1/gp96 in the endoplasmic reticulum. Plays a role in angiogenesis by inducing endothelial cell migration at low concentrations and endothelian cell apoptosis at high concentrations. Induces maturation of dendritic cells and monocyte cell adhesion.

Cricetulus griseus (taxid: 10029)

>sp|Q9ZTS1|SYM_ORYSJ Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 104/164 (63%), Gaps = 6/164 (3%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           LDIRVG I KA +H +ADSLYVEE+DVGE  PR + SGLVK++PLE +Q+R V VL NLK
Sbjct: 643 LDIRVGLIRKAQKHPDADSLYVEEIDVGEEAPRTVVSGLVKFIPLEEMQNRKVCVLCNLK 702

Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQ 224
           P  MRG+KSH M+LAAS+  H  VEL+EPP+ +  GER+ F        +P  AS N   
Sbjct: 703 PVAMRGIKSHAMVLAASNEDHTKVELVEPPESAAVGERVTFAGY---SGEPE-ASLN--A 756

Query: 225 KKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANI 268
           K K WE +   L ++  LVA   +    TSAG    +S+ +  I
Sbjct: 757 KSKTWEKLSADLHSNGELVACYKDVPFTTSAGVCKVKSIASGEI 800

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

>sp|Q7ZX51|SYYC_XENLA Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=yars PE=2 SV=1

 Score =  144 bits (363), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 85/215 (39%), Positives = 125/215 (58%), Gaps = 7/215 (3%)

Query: 56  LLRPHHPKTSSFCTSPITNANAETTTTSESLPRPAVEDNSVNVKDAANMLDIRVGRIIKA 115
           LL P   K +S     ++N      +  +S+P+ + +++     D + +LD+RVG+I+  
Sbjct: 320 LLHPIREKFNSPEMKKLSNDAYPDASKQKSVPKGSTKNSGTEEIDPS-LLDLRVGKILSV 378

Query: 116 WRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHG 175
            +H +ADSLYVE VDVGEA PR + SGLV+YVP + L  RSVV+L NLKP+ MRG++S G
Sbjct: 379 SQHPDADSLYVESVDVGEANPRCVVSGLVQYVPSDQLLGRSVVLLCNLKPQKMRGIESQG 438

Query: 176 MLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQP 234
           MLL AS +   + VE L+PP GS PGERI+    E+ E +     P    KKK++E +Q 
Sbjct: 439 MLLCASTEGEQKQVEPLDPPSGSAPGERIYIEGYENGEPE-GELKP----KKKVFEKLQV 493

Query: 235 HLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
             +    L A        T  G+V  ++L+  +I 
Sbjct: 494 DFRISDDLCAQWKGKNFLTKLGSVTCKTLRGGSIG 528

Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q12904|AIMP1_HUMAN Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 105/168 (62%), Gaps = 15/168 (8%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           LD+R+G II A +H +ADSLYVEEVDVGE  PR + SGLV +VPLE +Q+R V++L NLK
Sbjct: 155 LDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLK 214

Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGS---QEDKENQPAPASPN 221
           P  MRGV S  M++ AS  + E +E+L PP GSVPG+RI F +   + DKE  P      
Sbjct: 215 PAKMRGVLSQAMVMCAS--SPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNP------ 266

Query: 222 QVQKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLKNANI 268
              KKKIWE +QP L T+   VA   G        G   ++++ N+ I
Sbjct: 267 ---KKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGI 311

Non-catalytic component of the multisynthase complex. Stimulates the catalytic activity of cytoplasmic arginyl-tRNA synthase. Binds tRNA. Possesses inflammatory cytokine activity. Negatively regulates TGF-beta signaling through stabilization of SMURF2 by binding to SMURF2 and inhibiting its SMAD7-mediated degradation. Involved in glucose homeostasis through induction of glucagon secretion at low glucose levels. Promotes dermal fibroblast proliferation and wound repair. Regulates KDELR1-mediated retention of HSP90B1/gp96 in the endoplasmic reticulum. Plays a role in angiogenesis by inducing endothelial cell migration at low concentrations and endothelian cell apoptosis at high concentrations. Induces maturation of dendritic cells and monocyte cell adhesion. Modulates endothelial cell responses by degrading HIF-1A through interaction with PSMA7.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
255576659	258	methionyl-tRNA synthetase, putative [Ric	0.743	0.775	0.753	1e-84
224117654	281	predicted protein [Populus trichocarpa]	0.910	0.871	0.627	2e-80
225434269	260	PREDICTED: aminoacyl tRNA synthase compl	0.657	0.680	0.807	5e-80
15232216	273	Nucleic acid-binding, OB-fold-like prote	0.776	0.765	0.694	1e-79
297820848	274	tRNA-binding region domain-containing pr	0.776	0.762	0.685	4e-78
449480867	278	PREDICTED: aminoacyl tRNA synthase compl	0.750	0.726	0.687	2e-77
449453193	278	PREDICTED: aminoacyl tRNA synthase compl	0.750	0.726	0.687	4e-77
296084389	166	unnamed protein product [Vitis vinifera]	0.617	1.0	0.831	6e-77
356531659	256	PREDICTED: aminoacyl tRNA synthase compl	0.862	0.906	0.581	1e-75
351725397	256	uncharacterized protein LOC100499829 [Gl	0.866	0.910	0.596	1e-75

>gi|255576659|ref|XP_002529219.1| methionyl-tRNA synthetase, putative [Ricinus communis] gi|223531337|gb|EEF33175.1| methionyl-tRNA synthetase, putative [Ricinus communis]

 Score =  318 bits (816), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 153/203 (75%), Positives = 170/203 (83%), Gaps = 3/203 (1%)

Query: 67  FCTSPITNANAETTTTSESLPRPAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYV 126
           FCT+   N  AE      S    +  D+  +  DAA MLDIRVG+IIKAWRHEEADSLYV
Sbjct: 59  FCTAANVNVKAEEAAKVSS---ESNSDDGPSAIDAAKMLDIRVGKIIKAWRHEEADSLYV 115

Query: 127 EEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHE 186
           EEVDVGEAEPRIICSGLVKY+PL++LQD+ VVVLANLKPRNMRGVKS GML+AASDA+HE
Sbjct: 116 EEVDVGEAEPRIICSGLVKYIPLDYLQDKKVVVLANLKPRNMRGVKSSGMLMAASDASHE 175

Query: 187 NVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAML 246
           NVELLEPP  S+PGERIWFGS++DKENQP PASPNQVQKKKIWE VQPHLKTD S  AM+
Sbjct: 176 NVELLEPPMDSIPGERIWFGSEDDKENQPDPASPNQVQKKKIWESVQPHLKTDDSCKAMI 235

Query: 247 GEHLMQTSAGAVMSRSLKNANIS 269
           GEHLM+TSAG V+ RSLKNANIS
Sbjct: 236 GEHLMRTSAGVVVCRSLKNANIS 258

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117654|ref|XP_002331598.1| predicted protein [Populus trichocarpa] gi|222873994|gb|EEF11125.1| predicted protein [Populus trichocarpa]

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 167/266 (62%), Positives = 193/266 (72%), Gaps = 21/266 (7%)

Query: 19  MLLSSFSPAASFRTPPQLPLLRSSPITTI---TRTDRALLLLRPHHPKTSSFCTSPITNA 75
           MLLSSF  A SF   P +   +  PI TI        A      HH    SFCT+   N 
Sbjct: 22  MLLSSFKLAFSFSCCPIIIHKKKKPINTIPLLISFSAARHNCHLHH----SFCTT--ANV 75

Query: 76  NAETTTTSESLPR-------PAVEDNS----VNVKDAANMLDIRVGRIIKAWRHEEADSL 124
           NA+  +TS+S P+        A  D++      +KDA N+LDIRVGRIIKAWRHEEADSL
Sbjct: 76  NADAISTSDSEPQSGGGGGGDANSDDTGTSMSKIKDAGNLLDIRVGRIIKAWRHEEADSL 135

Query: 125 YVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAA 184
           YVE+VDVGEAEPRIICSGLVKY+PL+ LQ R VVVLANLKPRNMRGVKS+GML+AAS A+
Sbjct: 136 YVEQVDVGEAEPRIICSGLVKYIPLDHLQHRDVVVLANLKPRNMRGVKSNGMLMAASGAS 195

Query: 185 HENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVA 244
           HENVELL PP GS+PG+RIWFGS +D+ N P PASPNQ+QKKKIWE VQPHLKTD S +A
Sbjct: 196 HENVELLHPPDGSIPGDRIWFGSPDDQTNLPDPASPNQIQKKKIWESVQPHLKTDDSCMA 255

Query: 245 ML-GEHLMQTSAGAVMSRSLKNANIS 269
           +L GEH M+TSAG V S+SL NANIS
Sbjct: 256 ILGGEHFMRTSAGVVASKSLNNANIS 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434269|ref|XP_002280840.1| PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1-like [Vitis vinifera]

 Score =  303 bits (776), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 143/177 (80%), Positives = 163/177 (92%)

Query: 93  DNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFL 152
           D+   +KDAA+MLDIRVG ++KAWRHEEADSLYVEEVDVGE EPRIICSGLVKYVPL+ L
Sbjct: 84  DDGDPIKDAASMLDIRVGLVLKAWRHEEADSLYVEEVDVGEPEPRIICSGLVKYVPLDHL 143

Query: 153 QDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKE 212
           QD+ VVVLANLKPRNMRGVKS GML+AASDA+HENVELL PP+GS+PGERIWFGS+++K+
Sbjct: 144 QDKKVVVLANLKPRNMRGVKSCGMLMAASDASHENVELLVPPEGSIPGERIWFGSEDEKQ 203

Query: 213 NQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
           +QPA ASPNQVQKKKIWELVQPHLKTDAS + +LG HLM+TSAG V+SRSLKNANIS
Sbjct: 204 SQPAAASPNQVQKKKIWELVQPHLKTDASGIVVLGVHLMRTSAGVVVSRSLKNANIS 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232216|ref|NP_191557.1| Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] gi|7019692|emb|CAB75817.1| putative protein [Arabidopsis thaliana] gi|15028195|gb|AAK76594.1| unknown protein [Arabidopsis thaliana] gi|21281111|gb|AAM44914.1| unknown protein [Arabidopsis thaliana] gi|21555448|gb|AAM63861.1| unknown [Arabidopsis thaliana] gi|332646474|gb|AEE79995.1| Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 148/213 (69%), Positives = 176/213 (82%), Gaps = 4/213 (1%)

Query: 58  RPHHPKTSSFCTSPITNANAETTTTS-ESLPRPAVEDNSVNVKDAANMLDIRVGRIIKAW 116
           R   P+ ++FCT+     +A TT ++ ES  +   +    NVK+ AN+LDI+VGRI+KAW
Sbjct: 64  RSSWPRVATFCTAA---PDAGTTVSADESEKKSESQKEEENVKETANLLDIKVGRIVKAW 120

Query: 117 RHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGM 176
           +HEEADSLYVEEVD+GEAEPRIICSGLVKYVPL+ LQ  SVVVLANLKPRNMRGVKS GM
Sbjct: 121 QHEEADSLYVEEVDIGEAEPRIICSGLVKYVPLDLLQGASVVVLANLKPRNMRGVKSCGM 180

Query: 177 LLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHL 236
           LLAASDAAHENVELL PP+GSVPG+R+WFG++ED E  P PA PN+VQKKK+WELVQP L
Sbjct: 181 LLAASDAAHENVELLVPPEGSVPGDRVWFGNEEDLEQLPEPAPPNKVQKKKMWELVQPLL 240

Query: 237 KTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
           KTDAS V+ML EHLM+TS+G V S+SL+NANIS
Sbjct: 241 KTDASGVSMLKEHLMRTSSGLVTSKSLRNANIS 273

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820848|ref|XP_002878307.1| tRNA-binding region domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324145|gb|EFH54566.1| tRNA-binding region domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  297 bits (760), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 146/213 (68%), Positives = 174/213 (81%), Gaps = 4/213 (1%)

Query: 58  RPHHPKTSSFCTSPITNANAETTTTS-ESLPRPAVEDNSVNVKDAANMLDIRVGRIIKAW 116
           R   P+ ++FCT+    ++A TT ++ ES  +        NVK+ AN+LDI+VGRI+KAW
Sbjct: 65  RSSWPRVATFCTAA---SDAGTTVSADESEKKSESHKEEENVKETANLLDIKVGRIVKAW 121

Query: 117 RHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGM 176
           +HEEADSLYVEEVD+GEAEPRIICSGLVKYVPL+ LQ  SVVVLANLKPRNMRGVKS GM
Sbjct: 122 QHEEADSLYVEEVDIGEAEPRIICSGLVKYVPLDLLQGASVVVLANLKPRNMRGVKSCGM 181

Query: 177 LLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHL 236
           LLAASDAAHENVELL PP+GSVPG+R+WFG++ED E  P PA PN+VQKKK+WE VQP L
Sbjct: 182 LLAASDAAHENVELLVPPEGSVPGDRVWFGNEEDLEQLPEPAPPNKVQKKKMWESVQPLL 241

Query: 237 KTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
           KTD S V+ML EHLM+TS+G V S+SL+NANIS
Sbjct: 242 KTDESGVSMLKEHLMRTSSGLVTSKSLRNANIS 274

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449480867|ref|XP_004156017.1| PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1-like [Cucumis sativus]

 Score =  295 bits (754), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 143/208 (68%), Positives = 172/208 (82%), Gaps = 6/208 (2%)

Query: 66  SFCTS----PITNANAETTTTSESLPRPAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEA 121
           SFCT+    P+T ++A   ++S SL +   +D   N+KDAA+MLDIRVGRIIKAWRH EA
Sbjct: 73  SFCTTASTEPVT-SDASIASSSTSLDKDE-DDPEKNIKDAADMLDIRVGRIIKAWRHLEA 130

Query: 122 DSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAAS 181
           D+LYVEEVDVGE EPR+ICSGLVKY+PL+ L DR V+VLANLKPRNMRG+KS GML+AAS
Sbjct: 131 DTLYVEEVDVGEPEPRLICSGLVKYIPLDQLLDRRVIVLANLKPRNMRGIKSCGMLMAAS 190

Query: 182 DAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDAS 241
           D+ HENVELL PP+GS+PGERIWFGS+++K NQP  A+PNQ+QKKKIWE+VQPHLKTD  
Sbjct: 191 DSLHENVELLLPPEGSIPGERIWFGSEDEKGNQPDAAAPNQIQKKKIWEMVQPHLKTDGC 250

Query: 242 LVAMLGEHLMQTSAGAVMSRSLKNANIS 269
             A+LG H M+TSAG V S SLK+ANIS
Sbjct: 251 CTAVLGSHPMRTSAGVVTSTSLKHANIS 278

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453193|ref|XP_004144343.1| PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1-like [Cucumis sativus]

 Score =  293 bits (751), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 143/208 (68%), Positives = 171/208 (82%), Gaps = 6/208 (2%)

Query: 66  SFCTS----PITNANAETTTTSESLPRPAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEA 121
           SFCT+    P+T ++A    +S SL +   +D   N+KDAA+MLDIRVGRIIKAWRH EA
Sbjct: 73  SFCTTASTEPVT-SDASIALSSTSLDKDD-DDPEKNIKDAADMLDIRVGRIIKAWRHLEA 130

Query: 122 DSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAAS 181
           D+LYVEEVDVGE EPR+ICSGLVKY+PL+ L DR V+VLANLKPRNMRG+KS GML+AAS
Sbjct: 131 DTLYVEEVDVGEPEPRLICSGLVKYIPLDQLLDRRVIVLANLKPRNMRGIKSCGMLMAAS 190

Query: 182 DAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDAS 241
           D+ HENVELL PP+GS+PGERIWFGS+++K NQP  A+PNQ+QKKKIWE+VQPHLKTD  
Sbjct: 191 DSLHENVELLLPPEGSIPGERIWFGSEDEKGNQPDAAAPNQIQKKKIWEMVQPHLKTDGC 250

Query: 242 LVAMLGEHLMQTSAGAVMSRSLKNANIS 269
             A+LG H M+TSAG V S SLK+ANIS
Sbjct: 251 CTAVLGSHPMRTSAGVVTSTSLKHANIS 278

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084389|emb|CBI24777.3| unnamed protein product [Vitis vinifera]

 Score =  293 bits (749), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 138/166 (83%), Positives = 155/166 (93%)

Query: 104 MLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANL 163
           MLDIRVG ++KAWRHEEADSLYVEEVDVGE EPRIICSGLVKYVPL+ LQD+ VVVLANL
Sbjct: 1   MLDIRVGLVLKAWRHEEADSLYVEEVDVGEPEPRIICSGLVKYVPLDHLQDKKVVVLANL 60

Query: 164 KPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQV 223
           KPRNMRGVKS GML+AASDA+HENVELL PP+GS+PGERIWFGS+++K++QPA ASPNQV
Sbjct: 61  KPRNMRGVKSCGMLMAASDASHENVELLVPPEGSIPGERIWFGSEDEKQSQPAAASPNQV 120

Query: 224 QKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
           QKKKIWELVQPHLKTDAS + +LG HLM+TSAG V+SRSLKNANIS
Sbjct: 121 QKKKIWELVQPHLKTDASGIVVLGVHLMRTSAGVVVSRSLKNANIS 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531659|ref|XP_003534394.1| PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1-like [Glycine max]

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 142/244 (58%), Positives = 185/244 (75%), Gaps = 12/244 (4%)

Query: 32  TPPQLPLLRSSPITTITRTDRALLLLRPHHPKTSSFCTSPITNANAETTTTSESLPRPAV 91
           T P LPLL ++   T  R+      L    P  S +   P    ++ + +T E++   A+
Sbjct: 19  TRPHLPLLSNA---TRFRSKFPFFTLS-SSPNPSGY--PPFRTLSSSSASTDEAVTTEAI 72

Query: 92  EDNSVN------VKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVK 145
             N+ +      +KDAA +LD+RVG I++AW+H+EADSLYVEEVD+GE EPRIICSGLVK
Sbjct: 73  TSNNASGEAENSIKDAAGLLDMRVGCILRAWKHDEADSLYVEEVDIGEPEPRIICSGLVK 132

Query: 146 YVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWF 205
           Y+PLE LQ + V+VL+NLKPRNMRGVKS GML+AASDA HENVELL PP+ ++PGERIWF
Sbjct: 133 YIPLEHLQGKKVIVLSNLKPRNMRGVKSCGMLMAASDAKHENVELLFPPEEAIPGERIWF 192

Query: 206 GSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKN 265
           G++++K+NQP  A+PNQ+QKKKIWELVQPHLKTDAS +AMLGEH+M++S G+V  +SL+N
Sbjct: 193 GTEDEKDNQPDAATPNQLQKKKIWELVQPHLKTDASCIAMLGEHVMRSSVGSVACQSLQN 252

Query: 266 ANIS 269
           ANIS
Sbjct: 253 ANIS 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725397|ref|NP_001236579.1| uncharacterized protein LOC100499829 [Glycine max] gi|255626975|gb|ACU13832.1| unknown [Glycine max]

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 145/243 (59%), Positives = 180/243 (74%), Gaps = 10/243 (4%)

Query: 32  TPPQLPLLRSSPITTITRTDRALLLLRPH-----HPKTSSFCTSPITNANAETTTTSESL 86
           T P LPLL ++   T  R+      L        +P   +  +S  +   A TT T  S 
Sbjct: 19  TRPHLPLLSNA---TRFRSKFPFFTLSSSPNPSGYPPFRTLSSSSASTDEAMTTETITSN 75

Query: 87  PRPAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKY 146
                 DNS+  KDAA +LD+RVGRI++AW+H+E DSLYVEEVD+GE EPRIICSGLVKY
Sbjct: 76  NASGEADNSI--KDAAGLLDMRVGRILRAWKHDEVDSLYVEEVDIGEPEPRIICSGLVKY 133

Query: 147 VPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFG 206
           +PLE LQ + V+VL+NLKPRNMRGVKS GML+AASDA HENVELL PP+ + PGERIWFG
Sbjct: 134 IPLENLQGKKVIVLSNLKPRNMRGVKSCGMLMAASDAKHENVELLFPPEEATPGERIWFG 193

Query: 207 SQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNA 266
           ++++K+NQP  A+PNQ+QKKKIWELVQPHLKTD S +AMLGEH+M+TS G+V  +SL+NA
Sbjct: 194 TEDEKDNQPDAATPNQLQKKKIWELVQPHLKTDTSCIAMLGEHVMRTSVGSVACQSLQNA 253

Query: 267 NIS 269
           NIS
Sbjct: 254 NIS 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2080492	273	AT3G59980 [Arabidopsis thalian	0.780	0.769	0.679	3.2e-72
UNIPROTKB|Q29465	528	YARS "Tyrosine--tRNA ligase, c	0.657	0.335	0.478	1.2e-35
UNIPROTKB|E2RHR7	564	YARS "Uncharacterized protein"	0.594	0.283	0.506	2.5e-35
UNIPROTKB|F1MHM5	528	YARS "Tyrosine--tRNA ligase, c	0.657	0.335	0.473	3.1e-35
UNIPROTKB|I3L5T8	528	YARS "Uncharacterized protein"	0.594	0.303	0.5	6.5e-35
UNIPROTKB|P54577	528	YARS "Tyrosine--tRNA ligase, c	0.594	0.303	0.493	2.8e-34
MGI|MGI:2147627	528	Yars "tyrosyl-tRNA synthetase"	0.661	0.337	0.467	2.8e-34
RGD|1307616	528	Yars "tyrosyl-tRNA synthetase"	0.594	0.303	0.506	3.6e-34
UNIPROTKB|Q4KM49	528	Yars "Tyrosine--tRNA ligase, c	0.594	0.303	0.506	3.6e-34
MGI|MGI:102774	310	Aimp1 "aminoacyl tRNA syntheta	0.579	0.503	0.491	2e-33

TAIR|locus:2080492 AT3G59980 [Arabidopsis thaliana (taxid:3702)]

 Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
 Identities = 144/212 (67%), Positives = 168/212 (79%)

Query:    58 RPHHPKTSSFCTSPIXXXXXXXXXXXXXLPRPAVEDNSVNVKDAANMLDIRVGRIIKAWR 117
             R   P+ ++FCT+                     E+   NVK+ AN+LDI+VGRI+KAW+
Sbjct:    64 RSSWPRVATFCTAAPDAGTTVSADESEKKSESQKEEE--NVKETANLLDIKVGRIVKAWQ 121

Query:   118 HEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGML 177
             HEEADSLYVEEVD+GEAEPRIICSGLVKYVPL+ LQ  SVVVLANLKPRNMRGVKS GML
Sbjct:   122 HEEADSLYVEEVDIGEAEPRIICSGLVKYVPLDLLQGASVVVLANLKPRNMRGVKSCGML 181

Query:   178 LAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLK 237
             LAASDAAHENVELL PP+GSVPG+R+WFG++ED E  P PA PN+VQKKK+WELVQP LK
Sbjct:   182 LAASDAAHENVELLVPPEGSVPGDRVWFGNEEDLEQLPEPAPPNKVQKKKMWELVQPLLK 241

Query:   238 TDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
             TDAS V+ML EHLM+TS+G V S+SL+NANIS
Sbjct:   242 TDASGVSMLKEHLMRTSSGLVTSKSLRNANIS 273

GO:0000049 "tRNA binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q29465 YARS "Tyrosine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 89/186 (47%), Positives = 116/186 (62%)

Query:    88 RPAVED---NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLV 144
             +PAV+    NS   +   + LDIRVG++I   +H +ADSLYVE++DVGEAEPR + SGLV
Sbjct:   348 KPAVKGPAKNSEPEEVIPSRLDIRVGKVISVDKHPDADSLYVEKIDVGEAEPRTVVSGLV 407

Query:   145 KYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERI 203
             ++VP E LQDR VVVL NLKP+ MRGVKS GMLL AS +  +  VE L+PP GS PGER+
Sbjct:   408 QFVPKEELQDRLVVVLCNLKPQKMRGVKSQGMLLCASVEGVNRKVEPLDPPAGSAPGERV 467

Query:   204 WFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSL 263
             +    E  + QP         KKK++E +Q   K     +A   +    T  G+V  +SL
Sbjct:   468 FVKGYE--KGQP---DEELKPKKKVFEKLQADFKISDEYIAQWKQTNFMTKMGSVSCKSL 522

Query:   264 KNANIS 269
             K  NIS
Sbjct:   523 KGGNIS 528

GO:0005737 "cytoplasm" evidence=IEA

GO:0004831 "tyrosine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

GO:0006437 "tyrosyl-tRNA aminoacylation" evidence=IEA

UNIPROTKB|E2RHR7 YARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 383 (139.9 bits), Expect = 2.5e-35, P = 2.5e-35
 Identities = 84/166 (50%), Positives = 107/166 (64%)

Query:   105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
             LDIRVG++I   +H +ADSLYVE++DVGEAEPR I SGLV++VP E LQDR VVVL NLK
Sbjct:   404 LDIRVGKVISVDKHPDADSLYVEKIDVGEAEPRTIVSGLVQFVPKEELQDRLVVVLCNLK 463

Query:   165 PRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQV 223
             P+ MRG++S GMLL AS +  +  VE L+PP GS PGER++    E  + QP        
Sbjct:   464 PQKMRGIESQGMLLCASMEGVNRKVEPLDPPPGSAPGERVFVKGYE--KGQP---DEELK 518

Query:   224 QKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
              KKK++E +Q   KT    +A   +    T  G V  +SLK  NIS
Sbjct:   519 PKKKVFEKLQADFKTSEDCIAQWKQTNFMTKLGCVSCKSLKGGNIS 564

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006437 "tyrosyl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004831 "tyrosine-tRNA ligase activity" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|F1MHM5 YARS "Tyrosine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 88/186 (47%), Positives = 116/186 (62%)

Query:    88 RPAVED---NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLV 144
             +PAV+    NS   +   + LDIRVG++I   +H +ADSLYVE++DVGEAEPR + SGLV
Sbjct:   348 KPAVKGPAKNSEPEEVIPSRLDIRVGKVISVDKHPDADSLYVEKIDVGEAEPRTVVSGLV 407

Query:   145 KYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERI 203
             ++VP E LQDR VVVL NLKP+ MRGV+S GMLL AS +  +  VE L+PP GS PGER+
Sbjct:   408 QFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASVEGVNRKVEPLDPPAGSAPGERV 467

Query:   204 WFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSL 263
             +    E  + QP         KKK++E +Q   K     +A   +    T  G+V  +SL
Sbjct:   468 FVKGYE--KGQP---DEELKPKKKVFEKLQADFKISDEYIAQWKQTNFMTKLGSVSCKSL 522

Query:   264 KNANIS 269
             K  NIS
Sbjct:   523 KGGNIS 528

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006437 "tyrosyl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004831 "tyrosine-tRNA ligase activity" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|I3L5T8 YARS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 83/166 (50%), Positives = 106/166 (63%)

Query:   105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
             LDIRVGR+I   +H +ADSLYVE+VDVGEAEPR + SGLV++VP E LQDR VVVL NLK
Sbjct:   368 LDIRVGRVISVDKHPDADSLYVEKVDVGEAEPRTVVSGLVQFVPKEDLQDRLVVVLCNLK 427

Query:   165 PRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQV 223
             P+ MRG++S GMLL AS +     VE L+PP GS PGER++    E  + QP        
Sbjct:   428 PQKMRGIESQGMLLCASVEGVSRKVEPLDPPAGSAPGERVFVKGYE--KGQP---DEELK 482

Query:   224 QKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
              KKK++E +Q   K     +A   +    T  G++  +SLK  NIS
Sbjct:   483 PKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS 528

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006437 "tyrosyl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004831 "tyrosine-tRNA ligase activity" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|P54577 YARS "Tyrosine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 82/166 (49%), Positives = 106/166 (63%)

Query:   105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
             LDIRVG+II   +H +ADSLYVE++DVGEAEPR + SGLV++VP E LQDR VVVL NLK
Sbjct:   368 LDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 427

Query:   165 PRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQV 223
             P+ MRGV+S GMLL AS +  +  VE L+PP GS PGE ++    E  + QP        
Sbjct:   428 PQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYE--KGQP---DEELK 482

Query:   224 QKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
              KKK++E +Q   K     +A   +    T  G++  +SLK  NIS
Sbjct:   483 PKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS 528

GO:0006437 "tyrosyl-tRNA aminoacylation" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004871 "signal transducer activity" evidence=NAS

GO:0005153 "interleukin-8 receptor binding" evidence=TAS

GO:0005615 "extracellular space" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0004831 "tyrosine-tRNA ligase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006418 "tRNA aminoacylation for protein translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0007165 "signal transduction" evidence=NAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:2147627 Yars "tyrosyl-tRNA synthetase" [Mus musculus (taxid:10090)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 86/184 (46%), Positives = 109/184 (59%)

Query:    87 PRPAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKY 146
             P      NS   +   + LDIRVG+I+   +H +ADSLYVE++DVGEAEPR + SGLV++
Sbjct:   350 PAKGPAKNSEPEEVIPSRLDIRVGKILSVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQF 409

Query:   147 VPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWF 205
             VP E LQDR VVVL NLKP+ MRGV S GMLL AS +     VE L+PP GS PGER++ 
Sbjct:   410 VPKEELQDRLVVVLCNLKPQKMRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFV 469

Query:   206 GSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKN 265
                E  + QP         KKK++E +Q   K     +A   +    T  G V  +SLK 
Sbjct:   470 QGYE--KGQP---DEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGFVSCKSLKG 524

Query:   266 ANIS 269
              NIS
Sbjct:   525 GNIS 528

GO:0000049 "tRNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0004831 "tyrosine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0006437 "tyrosyl-tRNA aminoacylation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016874 "ligase activity" evidence=IEA

RGD|1307616 Yars "tyrosyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 84/166 (50%), Positives = 104/166 (62%)

Query:   105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
             LDIRVG+I+   +H +ADSLYVE++DVGEAEPR + SGLV++VP E LQDR VVVL NLK
Sbjct:   368 LDIRVGKILSVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 427

Query:   165 PRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQV 223
             P+ MRGV S GMLL AS +     VE L+PP GS PGER++    E  + QP        
Sbjct:   428 PQKMRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYE--KGQP---DEELK 482

Query:   224 QKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
              KKK++E +Q   K     VA   +    T  G V  +SLK  NIS
Sbjct:   483 PKKKVFEKLQADFKISDDCVAQWKQTNFMTKLGFVSCKSLKGGNIS 528

GO:0000049 "tRNA binding" evidence=IEA

GO:0004831 "tyrosine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006437 "tyrosyl-tRNA aminoacylation" evidence=IEA

UNIPROTKB|Q4KM49 Yars "Tyrosine--tRNA ligase, cytoplasmic" [Rattus norvegicus (taxid:10116)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 84/166 (50%), Positives = 104/166 (62%)

Query:   105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
             LDIRVG+I+   +H +ADSLYVE++DVGEAEPR + SGLV++VP E LQDR VVVL NLK
Sbjct:   368 LDIRVGKILSVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 427

Query:   165 PRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQV 223
             P+ MRGV S GMLL AS +     VE L+PP GS PGER++    E  + QP        
Sbjct:   428 PQKMRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYE--KGQP---DEELK 482

Query:   224 QKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
              KKK++E +Q   K     VA   +    T  G V  +SLK  NIS
Sbjct:   483 PKKKVFEKLQADFKISDDCVAQWKQTNFMTKLGFVSCKSLKGGNIS 528

GO:0005634 "nucleus" evidence=IEA

GO:0006437 "tyrosyl-tRNA aminoacylation" evidence=IEA

MGI|MGI:102774 Aimp1 "aminoacyl tRNA synthetase complex-interacting multifunctional protein 1" [Mus musculus (taxid:10090)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 84/171 (49%), Positives = 108/171 (63%)

Query:   102 ANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLA 161
             A+ LD+R+G I+ A +H +ADSLYVEEVDVGEA PR + SGLV +VPLE +Q+R VV+L 
Sbjct:   150 ASRLDLRIGCIVTAKKHPDADSLYVEEVDVGEAAPRTVVSGLVNHVPLEQMQNRMVVLLC 209

Query:   162 NLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGS---QEDKENQPAPA 218
             NLKP  MRGV S  M++ AS    E VE+L PP GSVPG+RI F +   + DKE  P   
Sbjct:   210 NLKPAKMRGVLSQAMVMCASSP--EKVEILAPPNGSVPGDRITFDAFPGEPDKELNP--- 264

Query:   219 SPNQVQKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLKNANI 268
                   KKKIWE +QP L T+A  VA   G        G   ++++ N+ I
Sbjct:   265 ------KKKIWEQIQPDLHTNAECVATYKGAPFEVKGKGVCRAQTMANSGI 309

GO:0000049 "tRNA binding" evidence=ISO

GO:0001525 "angiogenesis" evidence=IEA

GO:0001937 "negative regulation of endothelial cell proliferation" evidence=ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0005125 "cytokine activity" evidence=IDA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=ISO

GO:0017101 "aminoacyl-tRNA synthetase multienzyme complex" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043498 "cell surface binding" evidence=ISO

GO:0050900 "leukocyte migration" evidence=ISO;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
cd02799	105	cd02799, tRNA_bind_EMAP-II_like, tRNA-binding-doma	3e-60
PLN02610	801	PLN02610, PLN02610, probable methionyl-tRNA synthe	1e-58
cd02153	99	cd02153, tRNA_bindingDomain, The tRNA binding doma	5e-42
pfam01588	95	pfam01588, tRNA_bind, Putative tRNA binding domain	5e-41
cd02800	105	cd02800, tRNA_bind_EcMetRS_like, tRNA-binding-doma	4e-31
PRK00133	673	PRK00133, metG, methionyl-tRNA synthetase; Reviewe	2e-29
COG0073	123	COG0073, ARC1, EMAP domain [General function predi	8e-27
PRK12267	648	PRK12267, PRK12267, methionyl-tRNA synthetase; Rev	1e-25
TIGR00399	137	TIGR00399, metG_C_term, methionyl-tRNA synthetase	3e-24
cd02798	107	cd02798, tRNA_bind_CsaA, tRNA-binding-domain-conta	1e-21
PRK10089	112	PRK10089, PRK10089, tRNA-binding protein; Provisio	5e-15
cd02796	103	cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-	2e-10
TIGR00472	797	TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase	2e-09
PRK00629	791	PRK00629, pheT, phenylalanyl-tRNA synthetase subun	3e-09
TIGR02222	107	TIGR02222, chap_CsaA, export-related chaperone pro	3e-07
COG2517	219	COG2517, COG2517, Predicted RNA-binding protein co	4e-06

>gnl|CDD|239198 cd02799, tRNA_bind_EMAP-II_like, tRNA-binding-domain-containing EMAP2-like proteins

 Score =  185 bits (472), Expect = 3e-60
 Identities = 70/105 (66%), Positives = 85/105 (80%)

Query: 100 DAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVV 159
              + LDIRVG+I+K  +H +ADSLYVEE+D+GE EPR I SGLVK+VPLE +Q+R VVV
Sbjct: 1   VDPSRLDIRVGKILKVRKHPDADSLYVEEIDLGEEEPRTIVSGLVKFVPLEQMQNRLVVV 60

Query: 160 LANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIW 204
           L NLKPR MRGVKS GM+L AS+A HE VELLEPP+G+ PGER+ 
Sbjct: 61  LCNLKPRKMRGVKSQGMVLCASNADHEKVELLEPPEGAKPGERVT 105

This family contains a diverse fraction of tRNA binding proteins, including Caenorhabditis elegans methionyl-tRNA synthetase (CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS), Saccharomyces cerevisiae Arc1p, human p43 and EMAP2. CeMetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multiple activities during apoptosis, angiogenesis and inflammation and participates in malignant transformation. A EMAP-II-like cytokine also is released from hTyrRS upon cleavage. The active cytokine heptapeptide locates to this domain. Length = 105

>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase

 Score =  198 bits (506), Expect = 1e-58
 Identities = 83/166 (50%), Positives = 111/166 (66%), Gaps = 8/166 (4%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           LDIRVG I+KA +H +ADSLYVEE+DVGE  PR + SGLVKY+PLE +Q+R V VL NLK
Sbjct: 643 LDIRVGLIVKAEKHPDADSLYVEEIDVGEGAPRTVVSGLVKYIPLEEMQNRKVCVLCNLK 702

Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI-WFGSQEDKENQPAPASPNQV 223
           P  MRG+KS  M+LAAS++ H  VEL+EPP+ +  GER+ + G + + ++   P      
Sbjct: 703 PAAMRGIKSQAMVLAASNSDHTKVELVEPPESAAVGERVTFPGFEGEPDDVLNP------ 756

Query: 224 QKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
            KKK+WE +QP L T++ LVA   +    TSAG     S+ N +I 
Sbjct: 757 -KKKVWETLQPDLHTNSELVACYKDVPFTTSAGVCKVASIANGSIR 801

Length = 801

>gnl|CDD|239066 cd02153, tRNA_bindingDomain, The tRNA binding domain is also known as the Myf domain in literature

 Score =  139 bits (352), Expect = 5e-42
 Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 2/99 (2%)

Query: 107 IRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPR 166
           +RVG+I++A  H  AD LYV +VD+GE +PR I SG     P E L  + VVV  NLKP+
Sbjct: 1   LRVGKIVEAEPHPNADKLYVLKVDIGEEKPRQIVSGAANVYPPEELVGKKVVVAVNLKPK 60

Query: 167 NMRGVKSHGMLLAASD--AAHENVELLEPPQGSVPGERI 203
            +RGV+S GMLL+A +      +V +LE P+ +  G+RI
Sbjct: 61  KLRGVESEGMLLSAEELGLEEGSVGILELPEDAPVGDRI 99

This domain is found in a diverse collection of tRNA binding proteins, including prokaryotic phenylalanyl tRNA synthetases (PheRS), methionyl-tRNA synthetases (MetRS), human tyrosyl-tRNA synthetase(hTyrRS), Saccharomyces cerevisiae Arc1p, Thermus thermophilus CsaA, Aquifex aeolicus Trbp111, human p43 and human EMAP-II. PheRS, MetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. The molecular chaperones Trbp111 and CsaA also contain this domain. CsaA has export related activities; Trbp111 is structure-specific recognizing the L-shape of the tRNA fold. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multiple activities during apoptosis, angiogenesis and inflammation and participates in malignant transformation. An EMAP-II-like cytokine is released from hTyrRS upon cleavage. The active cytokine heptapeptide locates to this domain. For homodimeric members of this group which include CsaA, Trbp111 and Escherichia coli MetRS this domain acts as a dimerization domain. Length = 99

>gnl|CDD|216589 pfam01588, tRNA_bind, Putative tRNA binding domain

 Score =  136 bits (345), Expect = 5e-41
 Identities = 48/96 (50%), Positives = 63/96 (65%), Gaps = 1/96 (1%)

Query: 107 IRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPR 166
           +RVG++++A +H  AD L V +VDVGE E R I SG V   P E L  + VVV+ANLKP 
Sbjct: 1   LRVGKVLEAEKHPNADKLLVLKVDVGEEE-RQIVSGAVNVYPPEELVGKLVVVVANLKPA 59

Query: 167 NMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGER 202
            +RGV+S GM+L+A +    +V LLEPP    PG R
Sbjct: 60  KLRGVESEGMILSAEELDGGSVGLLEPPGDVPPGTR 95

This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1), human tyrosyl-tRNA synthetase, and endothelial-monocyte activating polypeptide II. G4p1 binds specifically to tRNA form a complex with methionyl-tRNA synthetases. In human tyrosyl-tRNA synthetase this domain may direct tRNA to the active site of the enzyme. This domain may perform a common function in tRNA aminoacylation. Length = 95

>gnl|CDD|239199 cd02800, tRNA_bind_EcMetRS_like, tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins

 Score =  111 bits (279), Expect = 4e-31
 Identities = 47/100 (47%), Positives = 66/100 (66%), Gaps = 3/100 (3%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           +D+RVG++++A R E +D L    VD+GE E R I SG+ K+ P E L  + VVV+ANLK
Sbjct: 9   VDLRVGKVLEAERVEGSDKLLKLTVDLGE-EERQIVSGIAKFYPPEELVGKKVVVVANLK 67

Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIW 204
           PR +RGV+S GM+LAA D     ++LL P +   PG R+ 
Sbjct: 68  PRKLRGVESQGMILAAEDG--GKLKLLTPDEEVEPGSRVS 105

This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties. MetRS aminoacylates methionine transfer RNAs (tRNAmet). AaTrbp111 is structure-specific molecular chaperone recognizing the L-shape of the tRNA fold. AaTrbp111 plays a role in nuclear trafficking of tRNAs. The functional unit of EcMetRs and AaTrbp111 is a homodimer, this domain acts as the dimerization domain. Length = 105

>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed

 Score =  116 bits (294), Expect = 2e-29
 Identities = 42/100 (42%), Positives = 62/100 (62%), Gaps = 4/100 (4%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           +D+RV +I++A + E AD L    +D+GE E R + SG+      E L  + VV++ANL 
Sbjct: 576 VDLRVAKIVEAEKVEGADKLLKLTLDLGE-ETRQVFSGIKSAYDPEELVGKLVVMVANLA 634

Query: 165 PRNMR-GVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
           PR M+ GV S GM+LAA      ++ LLEP +G+ PG R+
Sbjct: 635 PRKMKFGV-SEGMVLAAGPGG-GDLFLLEPDEGAKPGMRV 672

Length = 673

>gnl|CDD|223151 COG0073, ARC1, EMAP domain [General function prediction only]

 Score =  100 bits (251), Expect = 8e-27
 Identities = 46/124 (37%), Positives = 68/124 (54%), Gaps = 7/124 (5%)

Query: 86  LPRPAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEA-EPRIICSGLV 144
           L R  +E   + + D A + D+RVG++++A  H  AD L V +VD+G+  EPR I  G  
Sbjct: 1   LTRIGLEVEEIEIDDFAKV-DLRVGKVVEAEPHPNADKLLVLKVDLGDEKEPRQIVCGAP 59

Query: 145 KYVPLEFLQDRSVVVLAN---LKPRNMRGVKSHGMLLAAS--DAAHENVELLEPPQGSVP 199
            +   E L    V  + N   LKP  +RGV+S GMLL+A     + ENV +L   +G  P
Sbjct: 60  NFYAGEKLVGAKVGAVLNGGKLKPAKLRGVESEGMLLSAEELGLSDENVGILTLDEGVPP 119

Query: 200 GERI 203
           G ++
Sbjct: 120 GTKV 123

Length = 123

>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed

 Score =  105 bits (264), Expect = 1e-25
 Identities = 39/99 (39%), Positives = 61/99 (61%), Gaps = 2/99 (2%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           +++RV  +++A + E++D L   +VD+GE EPR I SG+ K+ P E L  + VVV+ANLK
Sbjct: 551 VELRVAEVLEAEKVEKSDKLLKLQVDLGEEEPRQIVSGIAKFYPPEELVGKKVVVVANLK 610

Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
           P  + G +S GM+LAA D     + LL   +    G ++
Sbjct: 611 PAKLMGEESQGMILAAEDD--GKLTLLTVDKEVPNGSKV 647

Length = 648

>gnl|CDD|232958 TIGR00399, metG_C_term, methionyl-tRNA synthetase C-terminal region/beta chain

 Score = 94.4 bits (235), Expect = 3e-24
 Identities = 51/127 (40%), Positives = 74/127 (58%), Gaps = 5/127 (3%)

Query: 77  AETTTTSESLPRPAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEP 136
            E     E    P  E  ++ + D   + D+RVG+I+KA R E++D L   ++D+G+ E 
Sbjct: 15  KEKKDEGEKALEPQKE--TITIDDFEKV-DLRVGKILKAERVEKSDKLLKLKLDLGD-EK 70

Query: 137 RIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQG 196
           R I SG+  Y   E L  + V+V+ANLKP  + GVKS GM+LAA D   + + LL P Q 
Sbjct: 71  RQIVSGIAGYYTPEELVGKKVIVVANLKPAKLFGVKSEGMILAAEDDG-KVLFLLSPDQE 129

Query: 197 SVPGERI 203
           ++ GERI
Sbjct: 130 AIAGERI 136

The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model describes a region of the methionyl-tRNA synthetase that is present at the C-terminus of MetG in some species (E. coli, B. subtilis, Thermotoga maritima, Methanobacterium thermoautotrophicum), and as a separate beta chain in Aquifex aeolicus. It is absent in a number of other species (e.g. Mycoplasma genitalium, Mycobacterium tuberculosis), while Pyrococcus horikoshii has both a full length MetG and a second protein homologous to the beta chain only. Proteins hit by This model should called methionyl-tRNA synthetase beta chain if and only if the model metG hits a separate protein not also hit by This model [Protein synthesis, tRNA aminoacylation]. Length = 137

>gnl|CDD|239197 cd02798, tRNA_bind_CsaA, tRNA-binding-domain-containing CsaA-like proteins

 Score = 86.5 bits (215), Expect = 1e-21
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 2/100 (2%)

Query: 105 LDIRVGRIIKAWRHEEA-DSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANL 163
           +D+RVG I++     EA    Y  +VD GE   +   + + KY   E L  R VV + N 
Sbjct: 9   VDLRVGTIVEVEDFPEARKPAYKLKVDFGEIGVKQSSAQITKYYKPEELIGRQVVAVVNF 68

Query: 164 KPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
            P+ + GV S  ++L A D     V LL P +    G ++
Sbjct: 69  PPKQIAGVLSEVLVLGADDEG-GEVVLLVPDREVPNGAKV 107

CsaA is a molecular chaperone with export related activities. CsaA has a putative tRNA binding activity. The functional unit of CsaA is a homodimer and this domain acts as a dimerization domain. Length = 107

>gnl|CDD|182232 PRK10089, PRK10089, tRNA-binding protein; Provisional

 Score = 69.1 bits (170), Expect = 5e-15
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 104 MLDIRVGRIIKAWRHEEADSL-YVEEVDVGEAEPRIICSG--LVKYVPLEFLQDRSVVVL 160
            +DIRVG I++A    EA    Y   +D GE E  +  S   +  +   E L  + VV +
Sbjct: 11  KVDIRVGTIVEAEPFPEARKPAYKLWIDFGE-EIGVKQSSAQITPHYTPEELIGKQVVAV 69

Query: 161 ANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
            N  P+ + G  S  ++L   D     V LL P +    G ++
Sbjct: 70  VNFPPKQIAGFMSEVLVLGFEDED-GEVVLLTPDRPVPNGVKL 111

Length = 112

>gnl|CDD|239196 cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 18/87 (20%)

Query: 107 IRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSG--LVKYVPLEFLQDRSVVV----- 159
           + VG++++   H  AD L V +VD+GE +P  I  G   V+           VVV     
Sbjct: 1   VVVGKVLEVEPHPNADKLNVCKVDIGENKPLQIVCGAPNVR-------AGDKVVVALPGA 53

Query: 160 -LAN---LKPRNMRGVKSHGMLLAASD 182
            L     +K R +RGV+S GML +A +
Sbjct: 54  VLPGGLKIKKRKLRGVESEGMLCSAKE 80

PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate the 2'OH of the terminal ribose of tRNA they belong functionally to class 1 aaRSs. This domain has general tRNA binding properties and is believed to direct tRNAphe to the active site of the enzyme. Length = 103

>gnl|CDD|232990 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 12/84 (14%)

Query: 107 IRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLV-----KYVPLEFLQDRSVVVLA 161
           + VG++++   H  AD L V +VD+GE E   I  G       K V +  L       L 
Sbjct: 46  VVVGKVLEVEPHPNADKLKVCKVDIGEKEMLQIVCGAPNVEAGKKVAV-ALPG---AKLP 101

Query: 162 N---LKPRNMRGVKSHGMLLAASD 182
           N   +K   +RGV+S GML + S+
Sbjct: 102 NGLKIKKSKLRGVESEGMLCSESE 125

Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however, so This model was built in fragment mode [Protein synthesis, tRNA aminoacylation]. Length = 797

>gnl|CDD|234804 PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed

 Score = 57.1 bits (139), Expect = 3e-09
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 24/103 (23%)

Query: 91  VEDNSVNVKDAANMLD-IRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIIC------SGL 143
           VE     V+D A  L  + VG++++  +H  AD L V +VDVGE   +I+C      +G 
Sbjct: 32  VEG----VEDVAAGLSGVVVGKVLECEKHPNADKLRVCQVDVGEEPLQIVCGAPNVRAGD 87

Query: 144 VKYVPLEFLQDRSVV--VLAN---LKPRNMRGVKSHGMLLAAS 181
              VP+      ++   VL     +K   +RGV+S GML +AS
Sbjct: 88  --KVPV------ALPGAVLPGGFKIKKAKLRGVESEGMLCSAS 122

Length = 791

>gnl|CDD|131277 TIGR02222, chap_CsaA, export-related chaperone protein CsaA

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 3/101 (2%)

Query: 105 LDIRVGRIIKAWRHEEA-DSLYVEEVDVG-EAEPRIICSGLVKYVPLEFLQDRSVVVLAN 162
           LD+RVGRI++A    EA    Y   VD G E   +   + + K    E L  R VV + N
Sbjct: 7   LDLRVGRIVRAEPFPEARKPAYKLWVDFGTEIGVKQSSAQITKLYKPEDLIGRLVVAVVN 66

Query: 163 LKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
             P+ + G  S  ++L   D     V LL+P +    G +I
Sbjct: 67  FPPKQIAGFLSEVLVLGVIDEQ-GRVVLLQPDRPVPNGTKI 106

This model describes Bacillus subtilis CsaA, an export-related chaperone that interacts with the Sec system, and related proteins from a number of other bacteria and archaea. The crystal structure is known for the homodimer from Thermus thermophilus [Protein fate, Protein folding and stabilization, Protein fate, Protein and peptide secretion and trafficking]. Length = 107

>gnl|CDD|225315 COG2517, COG2517, Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only]

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 7/97 (7%)

Query: 98  VKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSV 157
           + D    +DI VG ++   +H  AD L V  V++G     ++ + L      +  +   V
Sbjct: 113 INDPVIAVDIVVGEVMSVGKHPNADKLLVTVVNIGGRAVTVVTNDL------DVREGDRV 166

Query: 158 VVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPP 194
            V A L PRN  GV S GM L A D   E  EL + P
Sbjct: 167 AV-ALLPPRNFFGVVSEGMFLGAKDVDGEPGELPKGP 202

Length = 219

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
KOG2241	255	consensus tRNA-binding protein [Translation, ribos	100.0
PLN02610	801	probable methionyl-tRNA synthetase	100.0
cd02798	107	tRNA_bind_CsaA tRNA-binding-domain-containing CsaA	99.97
PRK10089	112	tRNA-binding protein; Provisional	99.97
TIGR02222	107	chap_CsaA export-related chaperone CsaA. This mode	99.96
cd02799	105	tRNA_bind_EMAP-II_like tRNA-binding-domain-contain	99.95
PF01588	95	tRNA_bind: Putative tRNA binding domain; InterPro:	99.95
cd02800	105	tRNA_bind_EcMetRS_like tRNA-binding-domain-contain	99.95
COG0073	123	ARC1 EMAP domain [General function prediction only	99.95
TIGR00399	137	metG_C_term methionyl-tRNA synthetase C-terminal r	99.94
cd02153	99	tRNA_bindingDomain The tRNA binding domain is also	99.94
PRK12267	648	methionyl-tRNA synthetase; Reviewed	99.9
PRK00133	673	metG methionyl-tRNA synthetase; Reviewed	99.89
cd02796	103	tRNA_bind_bactPheRS tRNA-binding-domain-containing	99.86
TIGR00472	798	pheT_bact phenylalanyl-tRNA synthetase, beta subun	99.72
PRK00629	791	pheT phenylalanyl-tRNA synthetase subunit beta; Re	99.68
COG2517	219	Predicted RNA-binding protein containing a C-termi	99.31
TIGR02306	341	RNA_lig_DRB0094 RNA ligase, DRB0094 family. The me	99.2
PHA02142	366	putative RNA ligase	95.98
PTZ00385	659	lysyl-tRNA synthetase; Provisional	89.8

>KOG2241 consensus tRNA-binding protein [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.5e-54  Score=390.01  Aligned_cols=162  Identities=53%  Similarity=0.809  Sum_probs=155.0

Q ss_pred             CCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecceEEeeee
Q 024343          102 ANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAAS  181 (269)
Q Consensus       102 ~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~SeGMLLsas  181 (269)
                      ..+||||||+|+++++||++|+||+++||+|+.++|||||||++|++.|+|+|++|+|+|||||+||||++|+||+||++
T Consensus        94 ~~~LDiRvG~Ivka~kHpdADsLYve~IdvgE~~PRTVvSGLvk~vpleemq~R~VvvlcNLKPakmRgv~S~gMvlcaS  173 (255)
T KOG2241|consen   94 VSLLDIRVGKIVKAGKHPDADSLYVEEIDVGEAEPRTVVSGLVKHVPLEEMQNRLVVVLCNLKPAKMRGVKSQGMVLCAS  173 (255)
T ss_pred             cceeeEEEeEEEEecccCCcceeEEEEeeecccccceeehhhHhhCCHHHHhCCeEEEEeccccccccccccceeEEecC
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEEEcCCCCCCCCceEEeCCCCCCcCCCCCCCCCCCccchhHhHhCCCcEECCCeEEEeCCeeeeecccceEec
Q 024343          182 DAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSR  261 (269)
Q Consensus       182 e~~~~~VelL~pp~~a~~G~rV~~~g~~~~~~~p~~~~p~~~~KkK~we~v~p~L~t~~~gva~y~~~~~~ts~G~~~~~  261 (269)
                      ++++..||+|.||.++.+|+||+|+||+   ++|+.   .+|+|||+||++||||+|+++|+|+|||.+|+|++|.|+++
T Consensus       174 s~d~~~VE~l~pP~gs~pGdRv~fegfe---gePd~---~LnPKKKiwE~iqpdl~t~~~~va~yKg~~~~~~~G~~~a~  247 (255)
T KOG2241|consen  174 SPDKSVVEPLAPPAGSKPGDRVTFEGFE---GEPDK---ELNPKKKIWEKIQPDLKTNEEGVATYKGAPFETKKGVCTAQ  247 (255)
T ss_pred             CcccceeeeccCCCCCCCCCeeeecCCC---CCcch---hcChhhhhHHHhCCCcccccceEEEecCCceeccCceEEEe
Confidence            9888889999999999999999999997   34654   46799999999999999999999999999999999999999


Q ss_pred             cCCCcccC
Q 024343          262 SLKNANIS  269 (269)
Q Consensus       262 sl~~~~Is  269 (269)
                      ||+|++||
T Consensus       248 ti~n~~Ik  255 (255)
T KOG2241|consen  248 TISNGGIK  255 (255)
T ss_pred             eccCCCCC
Confidence            99999997

>PLN02610 probable methionyl-tRNA synthetase

Probab=100.00  E-value=2.5e-42  Score=355.50  Aligned_cols=169  Identities=50%  Similarity=0.767  Sum_probs=156.5

Q ss_pred             CceeecccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceec
Q 024343           94 NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKS  173 (269)
Q Consensus        94 ~~isi~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~S  173 (269)
                      +.++++||. ++|||||+|+++++||++||||+++||+|++++||||||+++++++|+|+|++|+|++||||++||||.|
T Consensus       633 ~~~~~~~~~-~~dlrVg~I~~~~~hp~adkL~~~~Vd~G~~~~r~ivsG~~~~~~~e~l~G~~Vvv~~nlkp~klrGv~S  711 (801)
T PLN02610        633 AAEREIDVS-RLDIRVGLIVKAEKHPDADSLYVEEIDVGEGAPRTVVSGLVKYIPLEEMQNRKVCVLCNLKPAAMRGIKS  711 (801)
T ss_pred             cccccccce-eeeeEEEEEEEEEeecCCCcceEEEEEeCCCceEEEEeCccccCChHHhCCCEEEEEEEecccccCCccc
Confidence            347778996 5999999999999999999999999999987899999999999999999999999999999999999999


Q ss_pred             ceEEeeeecCCCCcEEEEcCCCCCCCCceEEeCCCCCCcCCCCCCCCCCCccchhHhHhCCCcEECCCeEEEeCCeeeee
Q 024343          174 HGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQT  253 (269)
Q Consensus       174 eGMLLsase~~~~~VelL~pp~~a~~G~rV~~~g~~~~~~~p~~~~p~~~~KkK~we~v~p~L~t~~~gva~y~~~~~~t  253 (269)
                      ||||||++++++++++|+.||+++++|++|+|+|+++   +|+.   .+++|||+||+|||+|+||++|+++|+|.+|+|
T Consensus       712 ~GMll~a~~~~~~~~~ll~~~~~~~~G~~v~~~~~~~---~p~~---~~~~k~k~~~~~~~~l~~~~~~~~~~~~~~~~~  785 (801)
T PLN02610        712 QAMVLAASNSDHTKVELVEPPESAAVGERVTFPGFEG---EPDD---VLNPKKKVWETLQPDLHTNSELVACYKDVPFTT  785 (801)
T ss_pred             ceeEEecccCCCCceEEEeCCCCCCCCCEEEeCCCCC---Cccc---ccCcccchHHHhCCCCEECCceEEEECCEEEEe
Confidence            9999999876666799999999999999999999764   3432   467899999999999999999999999999999


Q ss_pred             cccceEeccCCCcccC
Q 024343          254 SAGAVMSRSLKNANIS  269 (269)
Q Consensus       254 s~G~~~~~sl~~~~Is  269 (269)
                      ++|+|++++|+|+.|+
T Consensus       786 ~~g~~~~~~~~~~~i~  801 (801)
T PLN02610        786 SAGVCKVASIANGSIR  801 (801)
T ss_pred             cCCCeEcccCCCCEeC
Confidence            9999999999999986

>cd02798 tRNA_bind_CsaA tRNA-binding-domain-containing CsaA-like proteins

Probab=99.97  E-value=7.6e-31  Score=211.33  Aligned_cols=106  Identities=31%  Similarity=0.469  Sum_probs=98.9

Q ss_pred             eeecccCCcCCeEEEEEEEEEeCCCC-CceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecc
Q 024343           96 VNVKDAANMLDIRVGRIIKAWRHEEA-DSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSH  174 (269)
Q Consensus        96 isi~df~~~ldIrVGkIveve~HP~A-DKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~Se  174 (269)
                      +++++|.+ +|+|||+|+++++||++ ++||+++||+|++++|||+||+.+||++|||+|++|++++||||+||||+.||
T Consensus         1 ~~~~~f~k-ldi~vG~V~~~~~~p~a~~kL~~~~Vd~G~~~~r~ivsg~~~~~~~e~l~gk~v~~v~Nlkp~k~~G~~S~   79 (107)
T cd02798           1 ISYEDFEK-VDLRVGTIVEVEDFPEARKPAYKLKVDFGEIGVKQSSAQITKYYKPEELIGRQVVAVVNFPPKQIAGVLSE   79 (107)
T ss_pred             CCHHHcee-eeeEEEEEEEEEECCCcccceEEEEEEecCccceehhhhhhhcCCHHHhcCCcEEEEeCCCCceecceecc
Confidence            46788875 99999999999999999 99999999999877899999999999999999999999999999999999999


Q ss_pred             eEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343          175 GMLLAASDAAHENVELLEPPQGSVPGERI  203 (269)
Q Consensus       175 GMLLsase~~~~~VelL~pp~~a~~G~rV  203 (269)
                      |||||++++ +++++++.|+.++++|+||
T Consensus        80 gm~l~~~~~-~~~~~~~~~~~~~~~G~~i  107 (107)
T cd02798          80 VLVLGADDE-GGEVVLLVPDREVPNGAKV  107 (107)
T ss_pred             EEEEEEEcC-CCcEEEecCCCCCCCcCCC
Confidence            999999865 3578999999999999986

CsaA is a molecular chaperone with export related activities. CsaA has a putative tRNA binding activity. The functional unit of CsaA is a homodimer and this domain acts as a dimerization domain.

>PRK10089 tRNA-binding protein; Provisional

Probab=99.97  E-value=2.3e-30  Score=210.18  Aligned_cols=108  Identities=27%  Similarity=0.372  Sum_probs=100.0

Q ss_pred             ceeecccCCcCCeEEEEEEEEEeCCCCCce-EEEEEEcCCC-CcEEEEeCCCCcccccccCCCEEEEEEeeccceeccee
Q 024343           95 SVNVKDAANMLDIRVGRIIKAWRHEEADSL-YVEEVDVGEA-EPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVK  172 (269)
Q Consensus        95 ~isi~df~~~ldIrVGkIveve~HP~ADKL-yv~kVDvGe~-e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~  172 (269)
                      .+++++|.+ +|+|||+|+++++||++++| |+++||+|++ +.|+|++|+..||++|+|+|++|++++||||++|||+.
T Consensus         3 ~i~~~~f~k-ldlrvg~I~~~~~~p~a~kL~~~l~vd~G~~~~~r~i~sgl~~~~~~eel~gk~v~~v~Nlkp~~~~G~~   81 (112)
T PRK10089          3 TITYEDFEK-VDIRVGTIVEAEPFPEARKPAYKLWIDFGEEIGVKQSSAQITPHYTPEELIGKQVVAVVNFPPKQIAGFM   81 (112)
T ss_pred             ccCHhHhhh-hheeeEEEEEEEEcCCcCcceEEEEEEecCccCcceEehhhcccCCHHHHccCcEEEEECCCcceecCcc
Confidence            377889975 99999999999999999999 9999999985 58999999999999999999999999999999999999


Q ss_pred             cceEEeeeecCCCCcEEEEcCCCCCCCCceEE
Q 024343          173 SHGMLLAASDAAHENVELLEPPQGSVPGERIW  204 (269)
Q Consensus       173 SeGMLLsase~~~~~VelL~pp~~a~~G~rV~  204 (269)
                      |||||||+++++ ..++++.|+.++++|+||+
T Consensus        82 S~gmil~~~~~~-~~~~l~~p~~~~~~G~~i~  112 (112)
T PRK10089         82 SEVLVLGFEDED-GEVVLLTPDRPVPNGVKLV  112 (112)
T ss_pred             ccEEEEEEEcCC-CeEEEecCCCCCCCcCCcC
Confidence            999999998654 3589999999999999985

>TIGR02222 chap_CsaA export-related chaperone CsaA

Probab=99.96  E-value=2.8e-30  Score=208.56  Aligned_cols=105  Identities=31%  Similarity=0.406  Sum_probs=96.6

Q ss_pred             ecccCCcCCeEEEEEEEEEeCCCCCc-eEEEEEEcCCC-CcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecce
Q 024343           98 VKDAANMLDIRVGRIIKAWRHEEADS-LYVEEVDVGEA-EPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHG  175 (269)
Q Consensus        98 i~df~~~ldIrVGkIveve~HP~ADK-Lyv~kVDvGe~-e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~SeG  175 (269)
                      |++|.+ +|+|||+|+++++||+++| ||+++||+|++ +.|+|++|+..||++|+|+|++|++++||||++|||+.|||
T Consensus         1 ~~~f~k-ldlrvg~I~~~~~~p~a~k~L~~l~vd~G~~~~~r~ivsgi~~~~~~e~L~gk~v~~v~Nl~p~k~~G~~S~g   79 (107)
T TIGR02222         1 YEDFEK-LDLRVGRIVRAEPFPEARKPAYKLWVDFGTEIGVKQSSAQITKLYKPEDLIGRLVVAVVNFPPKQIAGFLSEV   79 (107)
T ss_pred             Cchhhh-hhheeEEEEEEeecCCcccceeEEEEEecCcCCcceEehhhhhhCCHHHhCCCeEEEEECCCCceeCCccccE
Confidence            467864 9999999999999999998 99999999974 47999999999999999999999999999999999999999


Q ss_pred             EEeeeecCCCCcEEEEcCCCCCCCCceEE
Q 024343          176 MLLAASDAAHENVELLEPPQGSVPGERIW  204 (269)
Q Consensus       176 MLLsase~~~~~VelL~pp~~a~~G~rV~  204 (269)
                      ||||+.+++ ..+.++.|++++++|+||+
T Consensus        80 Mil~~~~~~-~~~~l~~~~~~~~~G~~v~  107 (107)
T TIGR02222        80 LVLGVIDEQ-GRVVLLQPDRPVPNGTKIA  107 (107)
T ss_pred             EEEEEECCC-CeEEEecCCCCCCCcCCcC
Confidence            999998643 4589999999999999984

This model describes Bacillus subtilis CsaA, an export-related chaperone that interacts with the Sec system, and related proteins from a number of other bacteria and archaea. The crystal structure is known for the homodimer from Thermus thermophilus.

>cd02799 tRNA_bind_EMAP-II_like tRNA-binding-domain-containing EMAP2-like proteins

Probab=99.95  E-value=3.7e-28  Score=193.94  Aligned_cols=104  Identities=68%  Similarity=1.089  Sum_probs=96.0

Q ss_pred             ccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecceEEee
Q 024343          100 DAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLA  179 (269)
Q Consensus       100 df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~SeGMLLs  179 (269)
                      +|. ++|+|||+|+++++||++++||+++||+|+++.+||+||+.|+|++|+|+|++|++++||+|++|+|+.||||+||
T Consensus         2 ~f~-~~~i~vg~I~~~~~~p~s~kL~~l~Vd~G~~~~~~Ivsg~~~~~~~~~~~g~~v~~l~nl~~~~~~G~~S~GMll~   80 (105)
T cd02799           2 DPS-RLDIRVGKILKVRKHPDADSLYVEEIDLGEEEPRTIVSGLVKFVPLEQMQNRLVVVLCNLKPRKMRGVKSQGMVLC   80 (105)
T ss_pred             Cce-EEEEEEEEEEEEEecCCCCccEEEEEEeCCCcEEEEEcCccccCCHHHhCCCEEEEEEeeccceECCeeeceEEEE
Confidence            454 4999999999999999999999999999987889999999999999999999999999999999999999999999


Q ss_pred             eecCCCCcEEEEcCCCCCCCCceEE
Q 024343          180 ASDAAHENVELLEPPQGSVPGERIW  204 (269)
Q Consensus       180 ase~~~~~VelL~pp~~a~~G~rV~  204 (269)
                      +.+++...+.+++||.++++|++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~G~~i~  105 (105)
T cd02799          81 ASNADHEKVELLEPPEGAKPGERVT  105 (105)
T ss_pred             eccCCCCcEEEEECCCCCCCCCEeC
Confidence            9876534688999999999999983

This family contains a diverse fraction of tRNA binding proteins, including Caenorhabditis elegans methionyl-tRNA synthetase (CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS), Saccharomyces cerevisiae Arc1p, human p43 and EMAP2. CeMetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multiple activities during apoptosis, angiogenesis and inflammation and participates in malignant transformation. A EMAP-II-like cytokine also is released from hTyrRS upon cleavage. The active cytokine heptapeptide locates to this domain.

>PF01588 tRNA_bind: Putative tRNA binding domain; InterPro: IPR002547 This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1) [], human tyrosyl-tRNA synthetase [], and endothelial-monocyte activating polypeptide II

Probab=99.95  E-value=2.6e-28  Score=191.92  Aligned_cols=95  Identities=49%  Similarity=0.741  Sum_probs=87.4

Q ss_pred             eEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecceEEeeeecCCCC
Q 024343          107 IRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAAHE  186 (269)
Q Consensus       107 IrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~SeGMLLsase~~~~  186 (269)
                      ||||+|+++++||++||||+++||+|+++ |||+||+.|++.+++|.|+.+++++|+++++|+|+.|||||||+++.+..
T Consensus         1 i~vg~I~~~~~hp~sdkL~~~~Vd~G~~~-~~Ivsg~~n~~~~~~lv~~~~~~v~n~~~~~i~Gv~SeGMlls~~e~~~~   79 (95)
T PF01588_consen    1 IRVGKILEVEPHPNSDKLYVLKVDIGEEE-RQIVSGAKNVYEPEVLVGKKVVVVANLKPRKIRGVESEGMLLSASELGDG   79 (95)
T ss_dssp             EEEEEEEEEEEETTSSSEEEEEEESSSSE-EEEEESCTTTSTHHHHTTTEEEEETTSCBEEETTEEEESEE-EEECSTSS
T ss_pred             CEEEEEEEEEECCCCCEEEEEEEEeCCce-EEEEeccccccChhhhcceeEEEEEccCCcEEEeccCCEEEEEeeccCCC
Confidence            79999999999999999999999999966 99999999999999999999999999999999999999999999984445


Q ss_pred             cEEEEcCCCCCCCCce
Q 024343          187 NVELLEPPQGSVPGER  202 (269)
Q Consensus       187 ~VelL~pp~~a~~G~r  202 (269)
                      ...++.+|+++++|+|
T Consensus        80 ~~~ll~~~~~~~~G~~   95 (95)
T PF01588_consen   80 SVGLLVLPDDAPPGED   95 (95)
T ss_dssp             EEEEEEESSTS-TTSB
T ss_pred             CEEEEECCCCCCCCCC
Confidence            6778999999999986

G4p1 binds specifically to tRNA form a complex with methionyl-tRNA synthetases []. In human tyrosyl-tRNA synthetase this domain may direct tRNA to the active site of the enzyme []. This domain may perform a common function in tRNA aminoacylation [].; GO: 0000049 tRNA binding; PDB: 3BU2_C 1PYB_A 2Q2I_A 2Q2H_A 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 2CWP_A ....

>cd02800 tRNA_bind_EcMetRS_like tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins

Probab=99.95  E-value=8.8e-28  Score=191.54  Aligned_cols=103  Identities=48%  Similarity=0.771  Sum_probs=96.6

Q ss_pred             eecccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecceE
Q 024343           97 NVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGM  176 (269)
Q Consensus        97 si~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~SeGM  176 (269)
                      ++++|.. +|+|||+|+++++||++++||+++||+|+ +.++|+||++|+|.++++.|+++++++||+|++|||+.|+||
T Consensus         2 ~~~~~~~-ldi~vg~I~~~~~~p~a~kL~~~~vd~G~-~~~~iv~g~~~~~~~~~l~g~~v~~~~nl~~~~~~Gv~S~GM   79 (105)
T cd02800           2 TIDDFAK-VDLRVGKVLEAERVEGSDKLLKLTVDLGE-EERQIVSGIAKFYPPEELVGKKVVVVANLKPRKLRGVESQGM   79 (105)
T ss_pred             ChHHcee-eeEEEEEEEEEEecCCCCcceEEEEEeCC-eEEEEEeCcccccCHhHhccCceEeEeeECCccCCCeEeceE
Confidence            4677764 99999999999999999999999999998 789999999999999999999999999999999999999999


Q ss_pred             EeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343          177 LLAASDAAHENVELLEPPQGSVPGERI  203 (269)
Q Consensus       177 LLsase~~~~~VelL~pp~~a~~G~rV  203 (269)
                      |||+.++  +.++|+.||.++++|+||
T Consensus        80 l~s~~~~--~~~~l~~~~~~~~~G~~i  104 (105)
T cd02800          80 ILAAEDG--GKLKLLTPDEEVEPGSRV  104 (105)
T ss_pred             EEEecCC--CeEEEEeCCCCCCCcCCc
Confidence            9999865  568999999999999997

This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties. MetRS aminoacylates methionine transfer RNAs (tRNAmet). AaTrbp111 is structure-specific molecular chaperone recognizing the L-shape of the tRNA fold. AaTrbp111 plays a role in nuclear trafficking of tRNAs. The functional unit of EcMetRs and AaTrbp111 is a homodimer, this domain acts as the dimerization domain.

>COG0073 ARC1 EMAP domain [General function prediction only]

Probab=99.95  E-value=1.4e-27  Score=196.69  Aligned_cols=114  Identities=38%  Similarity=0.604  Sum_probs=101.0

Q ss_pred             CCCCCCceeecccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCC-CcEEEEeCCCCcccccccCCCEEEEEEe---ec
Q 024343           89 PAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEA-EPRIICSGLVKYVPLEFLQDRSVVVLAN---LK  164 (269)
Q Consensus        89 ~~~~~~~isi~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~-e~RtIvSGl~n~~~~EeL~GkkVvVl~N---LK  164 (269)
                      .+.+.+++.+++|. +.+||||+|+++++||++||||+|+||+|++ ++|||+||+.|||+.+++.++++.+++|   ||
T Consensus         4 ~~~e~e~i~~~~~~-~~~l~vg~V~~~~~~p~adkL~~~~Vd~G~~~~~~qiv~G~~n~~~~~~vv~a~v~~v~~~~~ik   82 (123)
T COG0073           4 IGLEVEEIEIDDFA-KVDLRVGKVVEAEPHPNADKLLVLKVDLGDEKEPRQIVCGAPNFYAGEKLVGAKVGAVLNGGKLK   82 (123)
T ss_pred             cccccccccccccc-cCCeEEEEEEEeEECCCCCeeEEEEEEcCCCCcEEEEEcCCccccCCceeeeeeEEEEeCCCccc
Confidence            34455779999996 5999999999999999999999999999975 4899999999999999999999999999   99


Q ss_pred             cceecceecceEEeeeecCCCC--cEEEEcCCCCCCCCceE
Q 024343          165 PRNMRGVKSHGMLLAASDAAHE--NVELLEPPQGSVPGERI  203 (269)
Q Consensus       165 prkirGv~SeGMLLsase~~~~--~VelL~pp~~a~~G~rV  203 (269)
                      |+||||+.|+|||||+.+.+-.  ...|+.+|++.++|+++
T Consensus        83 p~klrG~~S~GMics~~e~~~~~~~~~il~~~~~~~~g~~~  123 (123)
T COG0073          83 PAKLRGVESEGMLLSAEELGLSDENVGILTLDEGVPPGTKV  123 (123)
T ss_pred             ceeecCcccceEEEEcccCCCccccceEEeCCCCCCCCCCC
Confidence            9999999999999999985421  35578889898888763

>TIGR00399 metG_C_term methionyl-tRNA synthetase C-terminal region/beta chain

Probab=99.94  E-value=1.5e-26  Score=194.28  Aligned_cols=109  Identities=43%  Similarity=0.686  Sum_probs=100.6

Q ss_pred             CCCceeecccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecce
Q 024343           92 EDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGV  171 (269)
Q Consensus        92 ~~~~isi~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv  171 (269)
                      .+..+++++|.. +++|||+|+++++||++++||+++||+|+ +.|||+||+..+|.+++|.|++|++++||+|++|||+
T Consensus        28 ~k~~~~~~~f~k-ldi~Vg~I~eve~hp~adkL~v~~Vd~G~-~~~qIvsg~~~~~~~~~l~G~~v~~~~nlkp~k~~Gv  105 (137)
T TIGR00399        28 QKETITIDDFEK-VDLRVGKILKAERVEKSDKLLKLKLDLGD-EKRQIVSGIAGYYTPEELVGKKVIVVANLKPAKLFGV  105 (137)
T ss_pred             cccccCHhhcee-eeeEEEEEEEEeecCCCCcceEEEEEeCC-ceEEEEeCcccCcCHhHcCCCEEEeeEEecCccCCCe
Confidence            345688999975 99999999999999999999999999997 4699999999999999999999999999999999999


Q ss_pred             ecceEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343          172 KSHGMLLAASDAAHENVELLEPPQGSVPGERI  203 (269)
Q Consensus       172 ~SeGMLLsase~~~~~VelL~pp~~a~~G~rV  203 (269)
                      .|+|||||+.++++ .++|+.|+.++++|+||
T Consensus       106 ~S~GMlls~~~~~~-~~~l~~~~~~~~~G~~i  136 (137)
T TIGR00399       106 KSEGMILAAEDDGK-VLFLLSPDQEAIAGERI  136 (137)
T ss_pred             EeccEEEEEecCCC-eEEEecCCCCCCCcCCc
Confidence            99999999997543 68999999999999997

The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model describes a region of the methionyl-tRNA synthetase that is present at the C-terminus of MetG in some species (E. coli, B. subtilis, Thermotoga maritima, Methanobacterium thermoautotrophicum), and as a separate beta chain in Aquifex aeolicus. It is absent in a number of other species (e.g. Mycoplasma genitalium, Mycobacterium tuberculosis), while Pyrococcus horikoshii has both a full length MetG and a second protein homologous to the beta chain only. Proteins hit by this model should called methionyl-tRNA synthetase beta chain if and only if the model metG hits a separate protein not also hit by this model.

>cd02153 tRNA_bindingDomain The tRNA binding domain is also known as the Myf domain in literature

Probab=99.94  E-value=2.5e-26  Score=180.50  Aligned_cols=97  Identities=47%  Similarity=0.755  Sum_probs=89.2

Q ss_pred             eEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecceEEeeeecCC--
Q 024343          107 IRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASDAA--  184 (269)
Q Consensus       107 IrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~SeGMLLsase~~--  184 (269)
                      +|||+|+++++||++++||+++||+|+++.++|+||+.|+|++|+++|++|++++||+|++|+|+.|+|||||+++.+  
T Consensus         1 ~~vg~I~~~~~~p~~~kL~~~~vd~G~~~~~~ivsg~~~~~~~~~~~g~~v~~~~~l~~~~~~g~~S~GMl~s~~~~g~~   80 (99)
T cd02153           1 LRVGKIVEAEPHPNADKLYVLKVDIGEEKPRQIVSGAANVYPPEELVGKKVVVAVNLKPKKLRGVESEGMLLSAEELGLE   80 (99)
T ss_pred             CEEEEEEEEEECCCCCCCEEEEEEeCCCcEEEEEeCCcccCChHHhCCCEEEEEEecccccCCCeecccEEeeccccCCC
Confidence            689999999999999999999999998788999999999999999999999999999999999999999999999842  


Q ss_pred             CCcEEEEcCCCCCCCCceE
Q 024343          185 HENVELLEPPQGSVPGERI  203 (269)
Q Consensus       185 ~~~VelL~pp~~a~~G~rV  203 (269)
                      .+...|+.+|.++++|+++
T Consensus        81 ~~~~~i~~~~~~~~~G~~~   99 (99)
T cd02153          81 EGSVGILELPEDAPVGDRI   99 (99)
T ss_pred             CCceEEEECCCCCCCCCcC
Confidence            2345688888889999875

This domain is found in a diverse collection of tRNA binding proteins, including prokaryotic phenylalanyl tRNA synthetases (PheRS), methionyl-tRNA synthetases (MetRS), human tyrosyl-tRNA synthetase(hTyrRS), Saccharomyces cerevisiae Arc1p, Thermus thermophilus CsaA, Aquifex aeolicus Trbp111, human p43 and human EMAP-II. PheRS, MetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. The molecular chaperones Trbp111 and CsaA also contain this domain. CsaA has export related activities; Trbp111 is structure-specific recognizing the L-shape of the tRNA fold. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multi

>PRK12267 methionyl-tRNA synthetase; Reviewed

Probab=99.90  E-value=1.5e-23  Score=211.16  Aligned_cols=108  Identities=37%  Similarity=0.614  Sum_probs=99.6

Q ss_pred             CCceeecccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceeccee
Q 024343           93 DNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVK  172 (269)
Q Consensus        93 ~~~isi~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~  172 (269)
                      +.++++++|.. +|||||+|+++++||++|+||+++||+|++++|||+||+.+++.+++|.|++|++++||||++||||.
T Consensus       540 ~~~~~~~~f~~-~d~~vg~i~~~~~~p~adkL~~~~vd~G~~~~~~iv~g~~~~~~~~~l~g~~v~~~~nl~~~~~~Gv~  618 (648)
T PRK12267        540 KPEITIDDFDK-VELRVAEVLEAEKVEKSDKLLKLQVDLGEEEPRQIVSGIAKFYPPEELVGKKVVVVANLKPAKLMGEE  618 (648)
T ss_pred             cCccCHhhhhh-hceeEEEEEeeccCCCCCccceEEEEeCCCceEEEEeCCcccCCHhHhCCCeEEEEEeecccccCCcc
Confidence            35599999974 99999999999999999999999999998778999999999999999999999999999999999999


Q ss_pred             cceEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343          173 SHGMLLAASDAAHENVELLEPPQGSVPGERI  203 (269)
Q Consensus       173 SeGMLLsase~~~~~VelL~pp~~a~~G~rV  203 (269)
                      |+|||||+.++  +.+.|+.||+++++|++|
T Consensus       619 S~gMl~s~~~~--~~~~l~~~~~~~~~G~~~  647 (648)
T PRK12267        619 SQGMILAAEDD--GKLTLLTVDKEVPNGSKV  647 (648)
T ss_pred             cceEEEEeccC--CeEEEEeCCCCCCCcCCC
Confidence            99999999873  246788889899999986

>PRK00133 metG methionyl-tRNA synthetase; Reviewed

Probab=99.89  E-value=1.7e-23  Score=212.05  Aligned_cols=107  Identities=40%  Similarity=0.593  Sum_probs=99.1

Q ss_pred             CCceeecccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeecccee-cce
Q 024343           93 DNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNM-RGV  171 (269)
Q Consensus        93 ~~~isi~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprki-rGv  171 (269)
                      .+++++++|. ++|||||+|+++++||++++||+++||+|++ ++||+||+.|++.+++|.|++|++++||||++| +|+
T Consensus       565 ~~~~~~~~f~-~~di~vg~I~~~~~~p~~~~l~~~~vd~G~~-~~~iv~g~~~~~~~~~l~G~~v~~~~nlkp~~~~~Gv  642 (673)
T PRK00133        565 AETISFDDFA-KVDLRVAKIVEAEKVEGADKLLKLTLDLGEE-TRQVFSGIKSAYDPEELVGKLVVMVANLAPRKMKFGV  642 (673)
T ss_pred             ccccCHHHHh-hhhcceeeeEeeecCCCCCccceeeEecCCc-eeEEEcCccccCCHHHHhcCeeEEEEeeccccccCCc
Confidence            3569999997 4999999999999999999999999999985 899999999999999999999999999999999 999


Q ss_pred             ecceEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343          172 KSHGMLLAASDAAHENVELLEPPQGSVPGERI  203 (269)
Q Consensus       172 ~SeGMLLsase~~~~~VelL~pp~~a~~G~rV  203 (269)
                       |||||||+.++ +++|.++.++.++++|++|
T Consensus       643 -S~gMl~~~~~~-~~~i~~l~~~~~~~~G~~~  672 (673)
T PRK00133        643 -SEGMVLAAGPG-GGDLFLLEPDEGAKPGMRV  672 (673)
T ss_pred             -cceeEEEeecC-CCcEEEecCCCCCCCCCcC
Confidence             99999999854 3579999888889999986

>cd02796 tRNA_bind_bactPheRS tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain

Probab=99.86  E-value=1.2e-21  Score=155.04  Aligned_cols=90  Identities=34%  Similarity=0.562  Sum_probs=80.7

Q ss_pred             eEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEE---------eeccceecceecceEE
Q 024343          107 IRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLA---------NLKPRNMRGVKSHGML  177 (269)
Q Consensus       107 IrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~---------NLKprkirGv~SeGML  177 (269)
                      |+||+|+++++||++++||+++||+|+++.++|++|+.|+.     +|++|+++.         ||++++|+|+.|+|||
T Consensus         1 ~~vg~I~~~~~hp~~~kL~~~~vd~g~~~~~~Iv~~~~n~~-----~g~~vvv~~~gs~l~~~~~i~~~~~~G~~S~GMl   75 (103)
T cd02796           1 VVVGKVLEVEPHPNADKLNVCKVDIGENKPLQIVCGAPNVR-----AGDKVVVALPGAVLPGGLKIKKRKLRGVESEGML   75 (103)
T ss_pred             CEEEEEEEEEecCCCCceEEEEEEeCCCcEEEEEcCccHhh-----cCCEEEEEecCCCcCCCceEcceeeCCcccchhC
Confidence            68999999999999999999999999878999999999997     899999986         9999999999999999


Q ss_pred             eeeec----CCCCcEEEEcCCCCCCCCceE
Q 024343          178 LAASD----AAHENVELLEPPQGSVPGERI  203 (269)
Q Consensus       178 Lsase----~~~~~VelL~pp~~a~~G~rV  203 (269)
                      ||+.+    +++.+  ++++|+++++|+++
T Consensus        76 ~s~~elg~~~~~~g--i~~l~~~~~~G~~~  103 (103)
T cd02796          76 CSAKELGLGEDSDG--IIELPEDAPVGTDI  103 (103)
T ss_pred             cchhHcCCCCCCCe--EEECCCCCCCCCCC
Confidence            99987    33344  56778888999864

PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate the 2'OH of the terminal ribose of tRNA they belong functionally to class 1 aaRSs. This domain has general tRNA binding properties and is believed to direct tRNAphe to the active site of the enzyme.

>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial

Probab=99.72  E-value=1.9e-17  Score=171.04  Aligned_cols=91  Identities=30%  Similarity=0.465  Sum_probs=81.0

Q ss_pred             CeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEE---------EeeccceecceecceE
Q 024343          106 DIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVL---------ANLKPRNMRGVKSHGM  176 (269)
Q Consensus       106 dIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl---------~NLKprkirGv~SeGM  176 (269)
                      .++||+|+++++||++|+|++|+||+|+++.+||+||+.|+.     +|++|+|+         .+|++++|||+.|+||
T Consensus        45 ~~~vg~i~~~~~hp~~~~L~~~~vd~g~~~~~~Iv~ga~n~~-----~g~~V~va~~Ga~l~~~~~i~~~~~~Gv~S~GM  119 (798)
T TIGR00472        45 GVVVGKVLEVEPHPNADKLKVCKVDIGEKEMLQIVCGAPNVE-----AGKKVAVALPGAKLPNGLKIKKSKLRGVESEGM  119 (798)
T ss_pred             CEEEEEEEEEEecCCCCcEEEEEEEcCCCceEEEEeCCcccc-----CCCEEEEEccCCCccCCceEeeeecCCeeechh
Confidence            499999999999999999999999999767899999999998     89999998         5799999999999999


Q ss_pred             Eeeeec----CCCCcEEEEcCCCCCCCCceE
Q 024343          177 LLAASD----AAHENVELLEPPQGSVPGERI  203 (269)
Q Consensus       177 LLsase----~~~~~VelL~pp~~a~~G~rV  203 (269)
                      +|++++    ++++++.+|  |++.++|+++
T Consensus       120 lcs~~elg~~~~~~gi~~l--~~~~~~G~~~  148 (798)
T TIGR00472       120 LCSEDELGLDEKSDGIIVL--DEDAPLGTDI  148 (798)
T ss_pred             cccHhHcCCCCCCCCEEEc--CCCCCCCccH
Confidence            999987    234676444  6788899888

Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.

>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed

Probab=99.68  E-value=9.7e-17  Score=165.81  Aligned_cols=90  Identities=36%  Similarity=0.538  Sum_probs=80.2

Q ss_pred             CeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEE---------EeeccceecceecceE
Q 024343          106 DIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVL---------ANLKPRNMRGVKSHGM  176 (269)
Q Consensus       106 dIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl---------~NLKprkirGv~SeGM  176 (269)
                      +++||+|+++++||++|||++|+||+|+ +.+||+||+.|+.     +|++|+|+         .+|++++|||+.|+||
T Consensus        44 ~i~vg~i~~~~~hp~~~~L~v~~v~~g~-~~~~iv~ga~n~~-----~g~~v~~a~~G~~l~~~~~i~~~~~~Gv~S~GM  117 (791)
T PRK00629         44 GVVVGKVLECEKHPNADKLRVCQVDVGE-EPLQIVCGAPNVR-----AGDKVPVALPGAVLPGGFKIKKAKLRGVESEGM  117 (791)
T ss_pred             CEEEEEEEEEEecCCCCeEEEEEEEcCC-eEEEEEeCCcccc-----CCCEEEEEccCCCccCCceEeeeecCCeEEchh
Confidence            5999999999999999999999999998 5699999999997     89999995         3599999999999999


Q ss_pred             Eeeeec----CCCCcEEEEcCCCCCCCCceE
Q 024343          177 LLAASD----AAHENVELLEPPQGSVPGERI  203 (269)
Q Consensus       177 LLsase----~~~~~VelL~pp~~a~~G~rV  203 (269)
                      +|+++|    ++++||.+|  |+++++|+.+
T Consensus       118 lcs~~ELGl~~~~~GI~~L--~~~~~~G~~~  146 (791)
T PRK00629        118 LCSASELGLSDDHDGIIEL--PEDAPVGTDA  146 (791)
T ss_pred             cccHhHcCCCcCCCCeEEC--CCCCCCCccH
Confidence            999987    345787555  6788899888

>COG2517 Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only]

Probab=99.31  E-value=3.2e-12  Score=113.32  Aligned_cols=79  Identities=34%  Similarity=0.515  Sum_probs=68.8

Q ss_pred             ecccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecceEE
Q 024343           98 VKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGML  177 (269)
Q Consensus        98 i~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~SeGML  177 (269)
                      |.|...-+++.||+|.++.+||++|+||+|.||+|+ ..++||++.-.+.     +|++|+| +-|.|+.|.|++|+||+
T Consensus       113 I~d~~~aV~~vvGEV~Sv~~hp~aD~L~v~vvn~G~-r~~tVVTN~~~vr-----eg~~vaV-AlLPPr~F~gvvSeGMF  185 (219)
T COG2517         113 INDPVIAVDIVVGEVMSVGKHPNADKLLVTVVNIGG-RAVTVVTNDLDVR-----EGDRVAV-ALLPPRNFFGVVSEGMF  185 (219)
T ss_pred             cCCcceeEEEEeeeeeecccCCCCCceEEEEEecCC-eEEEEEecccccc-----cCCEEEE-EecChhHhcccccccee
Confidence            444444578999999999999999999999999998 3689999999998     8999755 56999999999999999


Q ss_pred             eeeecC
Q 024343          178 LAASDA  183 (269)
Q Consensus       178 Lsase~  183 (269)
                      |.+.+-
T Consensus       186 lg~~d~  191 (219)
T COG2517         186 LGAKDV  191 (219)
T ss_pred             eccccc
Confidence            999653

>TIGR02306 RNA_lig_DRB0094 RNA ligase, DRB0094 family

Probab=99.20  E-value=4.2e-11  Score=114.40  Aligned_cols=66  Identities=21%  Similarity=0.238  Sum_probs=60.7

Q ss_pred             eEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEE------E-------------------
Q 024343          107 IRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVL------A-------------------  161 (269)
Q Consensus       107 IrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl------~-------------------  161 (269)
                      .+||+|+++++||+||+|.+|+||.     .|||+|..|+.     .|.+|+++      -                   
T Consensus         3 ~vv~kV~~i~php~Ad~L~v~~Vd~-----~~vV~ga~n~~-----~Gd~Vv~a~~gs~Lp~~~~~~~~~~~~~~~~~g~   72 (341)
T TIGR02306         3 AVMREIADLQPHPNADALELATVGG-----WEVVVKKGEYR-----VGSDCVYFPEDSVLPTDAGLFRFLETRAKILDGK   72 (341)
T ss_pred             eEEEEEEEeeecCCCCceEEEEEeC-----EEEEcCCCcCC-----CCCEEEEECCCCCCCCCCCcchhhcccccccccc
Confidence            4799999999999999999999997     89999999998     89999986      1                   


Q ss_pred             ---eeccceecceecceEEeeeec
Q 024343          162 ---NLKPRNMRGVKSHGMLLAASD  182 (269)
Q Consensus       162 ---NLKprkirGv~SeGMLLsase  182 (269)
                         .|+.++|||+.||||+|+..+
T Consensus        73 ~~~~Ik~~klRG~~SqGMlcs~~~   96 (341)
T TIGR02306        73 MRARVKTVRLRGEISQGIALPTGA   96 (341)
T ss_pred             ccceEeEEEeccEEEccEEechhh
Confidence               678889999999999999886

The member of this family from Deinococcus radiodurans, a species that withstands and recovers from extensive radiation or dessication damage, is an apparent RNA ligase. It repairs RNA stand breaks in nicked DNA:RNA and RNA:RNA but not DNA:DNA duplexes. It has adenylyltransferase activity associated with the C-terminal domain. Related proteins also in this family are found in Streptomyces avermitilis MA-4680 and in bacteriophage 44RR2.8t. The phage example is unsurprising since one mechanism of host cell defense against phage is cleavage and inactivation of certain tRNA molecules. A fungal sequence from Neurospora crassa scores between trusted and noise cutofffs and may be similar in function.

>PHA02142 putative RNA ligase

Probab=95.98  E-value=0.026  Score=55.14  Aligned_cols=65  Identities=20%  Similarity=0.242  Sum_probs=47.3

Q ss_pred             eEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEE--------------------------
Q 024343          107 IRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVL--------------------------  160 (269)
Q Consensus       107 IrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl--------------------------  160 (269)
                      ..|-+|..+++||+||.+=+.+||-     .++|-.-..|.     .|..|+.+                          
T Consensus        10 v~v~~i~~i~pi~~Ad~ie~a~V~g-----w~vVV~kg~f~-----~GD~~vY~eiDS~lP~~~~~~~~l~~~~~~~~g~   79 (366)
T PHA02142         10 ASMRKIADLQPIPGADAIEVATIDG-----WEVVVKKGEFR-----VGDDCVYFEIDSLLPTDNPAFRFLETRARIYDGK   79 (366)
T ss_pred             EEEEEEeeecccCCCCceeEEEECC-----EEEEEeccccc-----cCCeEEEecccccccCCchhhhhhhccccccCCc
Confidence            6788999999999999998888872     33333333333     44444443                          


Q ss_pred             --EeeccceecceecceEEeeee
Q 024343          161 --ANLKPRNMRGVKSHGMLLAAS  181 (269)
Q Consensus       161 --~NLKprkirGv~SeGMLLsas  181 (269)
                        ..|+..++||..||||++-.+
T Consensus        80 ~~~Ri~t~klRG~iSQGl~lpl~  102 (366)
T PHA02142         80 MRARIKTIKLRGQISQGIALPTG  102 (366)
T ss_pred             ccceEEEEEEeeEEeeeEEeccc
Confidence              257889999999999998744

>PTZ00385 lysyl-tRNA synthetase; Provisional

Probab=89.80  E-value=0.036  Score=57.88  Aligned_cols=63  Identities=11%  Similarity=0.026  Sum_probs=54.0

Q ss_pred             CCCceeecccCCcCCeEEEEEEEEEeCCC-CCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccc
Q 024343           92 EDNSVNVKDAANMLDIRVGRIIKAWRHEE-ADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPR  166 (269)
Q Consensus        92 ~~~~isi~df~~~ldIrVGkIveve~HP~-ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKpr  166 (269)
                      -++++.++.|.+ .|        |+..|. +.+|.-.+.|.|.+..|+|.||+..||.  +|.|+..+++|| +||
T Consensus       595 ~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~-~pr  658 (659)
T PTZ00385        595 LEQEFRRNGLSE-DS--------CANVRELRRVIMELGQRGGENGLPTAGGRLSEWRI--TLTFAIIRFICG-TPR  658 (659)
T ss_pred             hHHHHhhcccch-hh--------hhhchHHHHHHhceecccCCCCccchhHHHHHHHH--HHhcceeEEEeC-CCC
Confidence            345567777764 43        888999 9999999999999999999999999996  799999999999 886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
1ntg_A	172	Crystal Structure Of The Emap Ii-Like Cytokine Rele		5e-37
1euj_A	166	A Novel Anti-Tumor Cytokine Contains A Rna-Binding		1e-34
1e7z_A	174	Crystal Structure Of The Emap2RNA BINDING DOMAIN OF		1e-34
1fl0_A	171	Crystal Structure Of The Emap2RNA-Binding Domain Of		1e-34
1mkh_A	107	C-Terminal Domain Of Methionyl-Trna Synthetase From		9e-17
1rqg_A	722	Methionyl-Trna Synthetase From Pyrococcus Abyssi Le		2e-16
3ers_X	118	Crystal Structure Of E. Coli Trbp111 Length = 118		7e-13
1pyb_A	111	Crystal Structure Of Aquifex Aeolicus Trbp111: A St		8e-11
2cwp_A	112	Crystal Structure Of Metrs Related Protein From Pyr		1e-06
2e8g_A	241	The Structure Of Protein From P. Horikoshii At 1.7		1e-05

>pdb|1NTG|A Chain A, Crystal Structure Of The Emap Ii-Like Cytokine Released From Human Tyrosyl-Trna Synthetase Length = 172

Iteration: 1
 Score =  150 bits (380), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 108/170 (63%), Gaps = 14/170 (8%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           LDIRVG+II   +H +ADSLYVE++DVGEAEPR + SGLV++VP E LQDR VVVL NLK
Sbjct: 10  LDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLK 69
Query: 165 PRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQE----DKENQPAPAS 219
           P+ MRGV+S GMLL AS +  +  VE L+PP GS PGE ++    E    D+E +P    
Sbjct: 70  PQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKP---- 125
Query: 220 PNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
                KKK++E +Q   K     +A   +    T  G++  +SLK  NIS
Sbjct: 126 -----KKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS 170

>pdb|1EUJ|A Chain A, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif Present In Aminoacyl-Trna Synthetases Length = 166

Iteration: 1
 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 105/168 (62%), Gaps = 15/168 (8%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           LD+R+G II A +H +ADSLYVEEVDVGE  PR + SGLV +VPLE +Q+R V++L NLK
Sbjct: 9   LDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLK 68
Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGS---QEDKENQPAPASPN 221
           P  MRGV S  M++ AS  + E +E+L PP GSVPG+RI F +   + DKE  P      
Sbjct: 69  PAKMRGVLSQAMVMCAS--SPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNP------ 120
Query: 222 QVQKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLKNANI 268
              KKKIWE +QP L T+   VA   G        G   ++++ N+ I
Sbjct: 121 ---KKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGI 165

>pdb|1E7Z|A Chain A, Crystal Structure Of The Emap2RNA BINDING DOMAIN OF THE P43 Protein From Human Aminoacyl-Trna Synthetase Complex Length = 174

Iteration: 1
 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 105/168 (62%), Gaps = 15/168 (8%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           LD+R+G II A +H +ADSLYVEEVDVGE  PR + SGLV +VPLE +Q+R V++L NLK
Sbjct: 9   LDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLK 68
Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGS---QEDKENQPAPASPN 221
           P  MRGV S  M++ AS  + E +E+L PP GSVPG+RI F +   + DKE  P      
Sbjct: 69  PAKMRGVLSQAMVMCAS--SPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNP------ 120
Query: 222 QVQKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLKNANI 268
              KKKIWE +QP L T+   VA   G        G   ++++ N+ I
Sbjct: 121 ---KKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGI 165

>pdb|1FL0|A Chain A, Crystal Structure Of The Emap2RNA-Binding Domain Of The P43 Protein From Human Aminoacyl-Trna Synthetase Complex Length = 171

Iteration: 1
 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 105/168 (62%), Gaps = 15/168 (8%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           LD+R+G II A +H +ADSLYVEEVDVGE  PR + SGLV +VPLE +Q+R V++L NLK
Sbjct: 6   LDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLK 65
Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGS---QEDKENQPAPASPN 221
           P  MRGV S  M++ AS  + E +E+L PP GSVPG+RI F +   + DKE  P      
Sbjct: 66  PAKMRGVLSQAMVMCAS--SPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNP------ 117
Query: 222 QVQKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLKNANI 268
              KKKIWE +QP L T+   VA   G        G   ++++ N+ I
Sbjct: 118 ---KKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGI 162

>pdb|1MKH|A Chain A, C-Terminal Domain Of Methionyl-Trna Synthetase From Pyrococcus Abyssi Length = 107

Iteration: 1
 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           LD+RVG+II+   H  AD LYV +VD+G+ E R + +GL KY   E L +R VVV+ANL+
Sbjct: 11  LDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLE 69
Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
           P+ +RG+ S GMLLAA D   E V LL P +    G ++
Sbjct: 70  PKKLRGIGSQGMLLAADDG--ERVALLMPDKEVKLGAKV 106

>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi Length = 722

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 68/108 (62%), Gaps = 4/108 (3%)
Query: 96  VNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDR 155
           V   D A  LD+RVG+II+   H  AD LYV +VD+G+ E R + +GL KY   E L +R
Sbjct: 618 VKFDDFAK-LDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNR 675
Query: 156 SVVVLANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
            VVV+ANL+P+ +RG+ S GMLLAA D   E V LL P +    G ++
Sbjct: 676 YVVVVANLEPKKLRGIGSQGMLLAADDG--ERVALLMPDKEVKLGAKV 721

>pdb|3ERS|X Chain X, Crystal Structure Of E. Coli Trbp111 Length = 118

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 3/100 (3%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           L++RVG+I++  RHE AD LY+ +VDVG+   + + S LV Y   E L  ++VVVL NL+
Sbjct: 12  LEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTS-LVPYYSEEELMGKTVVVLCNLQ 70
Query: 165 PRNMRGVKSHGMLLAA-SDAAHENVELLEPPQGSVPGERI 203
              MRG  S  MLL A +D   E+V LL P +    G R+
Sbjct: 71  KAKMRGETSECMLLCAETDDGSESV-LLTPERMMPAGVRV 109

>pdb|1PYB|A Chain A, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture- Specific Trna Binding Protein Length = 111

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           +D+RV +++ A R E ++ L    + +G+ E R + +G+ KY   E L  + +V++ANLK
Sbjct: 15  VDLRVAKVLSAERVEGSEKLLKLTLSLGD-EERTVVAGIAKYYTPEELVGKKIVIVANLK 73
Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
           PR + G++S GM+LAASD   EN+ ++ P +    G ++
Sbjct: 74  PRKIFGIESQGMILAASDG--ENLSVIVPDRDVKEGAKL 110

>pdb|2CWP|A Chain A, Crystal Structure Of Metrs Related Protein From Pyrococcus Horikoshii Length = 112

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 100 DAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVV 159
           D      ++VG + KA + +    L    VD G  E R I +G+   +P E L+ +  + 
Sbjct: 10  DEFWKFQMKVGLVKKAEKIKRTKKLIKLIVDFGNEE-RTIVTGIADQIPPEELEGKKFIF 68
Query: 160 LANLKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIW 204
           + NLKP+   GV+S GML+ A +     V L+  P+    G R+W
Sbjct: 69  VVNLKPKKFSGVESQGMLILA-ETEDGKVYLIPVPEEVPVGARVW 112

>pdb|2E8G|A Chain A, The Structure Of Protein From P. Horikoshii At 1.7 Angstrom Resolution Length = 241

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 98  VKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSV 157
           + D    +DI VG ++   +H  AD L V  V++GE    ++ + L        +++ + 
Sbjct: 129 INDPVIAVDIVVGEVMSVGKHPSADRLLVTNVNIGERAVTVVTNDLT-------VKEGNR 181
Query: 158 VVLANLKPRNMRGVKSHGMLLAASDAAHENV--ELLEPPQG 196
           V +A L PRN  G+ S GM L A +   +NV  E+   P+G
Sbjct: 182 VAVALLPPRNFFGIVSEGMFLGAGEGVLKNVKGEIGGLPKG 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
1ntg_A	172	Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligas	1e-72
1fl0_A	171	Endothelial-monocyte activating polypeptide II; RN	6e-71
1pxf_A	111	Hypothetical protein YGJH; oligonucleotide-oligosa	4e-44
1mkh_A	107	Metrs;, C-terminal domain of methionyl-tRNA synthe	6e-39
1rqg_A	722	Methionyl-tRNA synthetase; translation, dimerizati	7e-33
1pyb_A	111	Methionyl-tRNA synthetase beta subunit; oligonucle	1e-31
2cwp_A	112	Metrs related protein; structural GEN riken struct	1e-31
1gd7_A	109	CSAA protein; oligonucleotide-binding fold, functi	3e-29
3g48_A	112	Chaperone CSAA; structural genomics, niaid structu	5e-27
2nzh_A	113	Protein CSAA; beta barrel, oligonucleotide/oligosa	4e-25
2e8g_A	241	Hypothetical protein PH0536; oligonucleotide/oligo	8e-25
2q2i_A	116	AGR_C_4014P, secretion chaperone; beta barrel, OB	1e-24
2q2h_A	131	AGR_C_4014P, secretion chaperone, phage-display de	7e-24
3pco_B	795	Phenylalanyl-tRNA synthetase, beta chain; aminoacy	2e-08
3bu2_A	199	Putative tRNA-binding protein; structural genomics	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
1b7y_B	785	Phers, protein (phenylalanyl-tRNA synthetase); enz	8e-05
2rhq_B	795	Phenylalanyl-tRNA synthetase beta chain; heterotet	2e-04

>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4 Length = 172

 Score =  219 bits (559), Expect = 1e-72
 Identities = 81/167 (48%), Positives = 106/167 (63%), Gaps = 6/167 (3%)

Query: 104 MLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANL 163
            LDIRVG+II   +H +ADSLYVE++DVGEAEPR + SGLV++VP E LQDR VVVL NL
Sbjct: 9   RLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNL 68

Query: 164 KPRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQ 222
           KP+ MRGV+S GMLL AS +  +  VE L+PP GS PGE ++    E  +    P    +
Sbjct: 69  KPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQ----PDEELK 124

Query: 223 VQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
             KKK++E +Q   K     +A   +    T  G++  +SLK  NIS
Sbjct: 125 -PKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS 170

>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A Length = 171

 Score =  214 bits (547), Expect = 6e-71
 Identities = 77/166 (46%), Positives = 101/166 (60%), Gaps = 9/166 (5%)

Query: 104 MLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANL 163
            LD+R+G II A +H +ADSLYVEEVDVGE  PR + SGLV +VPLE +Q+R V++L NL
Sbjct: 5   RLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNL 64

Query: 164 KPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQV 223
           KP  MRGV S  M++ AS    E +E+L PP GSVPG+RI F   +    +P        
Sbjct: 65  KPAKMRGVLSQAMVMCASSP--EKIEILAPPNGSVPGDRITF---DAFPGEPDKELN--- 116

Query: 224 QKKKIWELVQPHLKTDASLVAML-GEHLMQTSAGAVMSRSLKNANI 268
            KKKIWE +QP L T+   VA   G        G   ++++ N+ I
Sbjct: 117 PKKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGI 162

>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} SCOP: b.40.4.4 PDB: 3ers_X Length = 111

 Score =  144 bits (365), Expect = 4e-44
 Identities = 40/99 (40%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           L++RVG+I++  RHE AD LY+ +VDVG+ +     + LV Y   E L  ++VVVL NL+
Sbjct: 12  LEMRVGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYYSEEELMGKTVVVLCNLQ 70

Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
              MRG  S  MLL A         LL P +    G R+
Sbjct: 71  KAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRV 109

>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4 Length = 107

 Score =  130 bits (330), Expect = 6e-39
 Identities = 48/99 (48%), Positives = 65/99 (65%), Gaps = 3/99 (3%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           LD+RVG+II+   H  AD LYV +VD+G+ E R + +GL KY   E L +R VVV+ANL+
Sbjct: 11  LDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLE 69

Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
           P+ +RG+ S GMLLAA D   E V LL P +    G ++
Sbjct: 70  PKKLRGIGSQGMLLAADDG--ERVALLMPDKEVKLGAKV 106

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722

 Score =  125 bits (316), Expect = 7e-33
 Identities = 48/99 (48%), Positives = 65/99 (65%), Gaps = 3/99 (3%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           LD+RVG+II+   H  AD LYV +VD+G+ E R + +GL KY   E L +R VVV+ANL+
Sbjct: 626 LDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLE 684

Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
           P+ +RG+ S GMLLAA D   E V LL P +    G ++
Sbjct: 685 PKKLRGIGSQGMLLAADDG--ERVALLMPDKEVKLGAKV 721

>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4 Length = 111

 Score =  112 bits (282), Expect = 1e-31
 Identities = 35/99 (35%), Positives = 62/99 (62%), Gaps = 3/99 (3%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           +D+RV +++ A R E ++ L    + +G+ E R + +G+ KY   E L  + +V++ANLK
Sbjct: 15  VDLRVAKVLSAERVEGSEKLLKLTLSLGD-EERTVVAGIAKYYTPEELVGKKIVIVANLK 73

Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
           PR + G++S GM+LAASD   EN+ ++ P +    G ++
Sbjct: 74  PRKIFGIESQGMILAASDG--ENLSVIVPDRDVKEGAKL 110

>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii} Length = 112

 Score =  112 bits (282), Expect = 1e-31
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
             ++VG + KA + +    L    VD G  E R I +G+   +P E L+ +  + + NLK
Sbjct: 15  FQMKVGLVKKAEKIKRTKKLIKLIVDFGN-EERTIVTGIADQIPPEELEGKKFIFVVNLK 73

Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIW 204
           P+   GV+S GML+ A       V L+  P+    G R+W
Sbjct: 74  PKKFSGVESQGMLILAET-EDGKVYLIPVPEEVPVGARVW 112

>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4 Length = 109

 Score =  105 bits (265), Expect = 3e-29
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 105 LDIRVGRIIKAWRHEEAD-SLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANL 163
           LD+RVGR+++A  HE+A    Y   VD+G    +   + + +    E L  R VV   NL
Sbjct: 10  LDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNL 69

Query: 164 KPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIW 204
             + + G  S  ++L   D A   V LL P +    G +++
Sbjct: 70  GAKRVAGFLSEVLVLGVPDEA-GRVVLLAPDREVPLGGKVF 109

>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} Length = 112

 Score =  100 bits (251), Expect = 5e-27
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)

Query: 105 LDIRVGRIIKAWRHEEAD-SLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANL 163
           LD+R+G +  A   +EA       E+D GE   +   + + K    E L  + +V + N 
Sbjct: 13  LDLRIGTVTHAEEFKEARVPAIRLEIDFGELGMKQSSAQITKRYNPEDLIGQQIVAVVNF 72

Query: 164 KPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
            P+ + G KS  ++L     A  +V LL+P      G +I
Sbjct: 73  PPKRVAGFKSEVLVLGGVPEA-GDVVLLQPNMELPNGTKI 111

>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A Length = 113

 Score = 95.3 bits (238), Expect = 4e-25
 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 3/101 (2%)

Query: 105 LDIRVGRIIKAWRHEEAD-SLYVEEVDVG-EAEPRIICSGLVKYVPLEFLQDRSVVVLAN 162
           LDIR G I+KA    EA        +D G E   +   + + K    E L ++ V+ + N
Sbjct: 13  LDIRTGTIVKAEEFPEARVPAIKLVIDFGTEIGIKQSSAQITKRYKPEGLINKQVIAVVN 72

Query: 163 LKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
             PR + G KS  ++L        +V LL+P Q    G +I
Sbjct: 73  FPPRRIAGFKSEVLVLGGIP-GQGDVVLLQPDQPVPNGTKI 112

>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii} Length = 241

 Score = 98.2 bits (244), Expect = 8e-25
 Identities = 42/201 (20%), Positives = 72/201 (35%), Gaps = 16/201 (7%)

Query: 6   SASILKSSSARVHMLLSSFSPAASFRTPPQLPLLRSSP---ITTITRTDRALLLLRPHHP 62
           S  + K     +  L  S+         PQ+  L+      I  +   D     L     
Sbjct: 38  SIQLAKEMIPDIQALRYSYIDPEELVDTPQMKDLKEKAKGIIEALGGEDWHHKFLSQASR 97

Query: 63  KTSSFCTSPITNANAETTTTSESLPRPAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEAD 122
           +        +        T      R  +      + D    +DI VG ++   +H  AD
Sbjct: 98  EDREKVEEQVARIKFFLNTILNLDRRLKLGK----INDPVIAVDIVVGEVMSVGKHPSAD 153

Query: 123 SLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASD 182
            L V  V++GE    ++ + L        +++ + V +A L PRN  G+ S GM L A +
Sbjct: 154 RLLVTNVNIGERAVTVVTNDLT-------VKEGNRVAVALLPPRNFFGIVSEGMFLGAGE 206

Query: 183 AAHENVE--LLEPPQGSVPGE 201
              +NV+  +   P+G     
Sbjct: 207 GVLKNVKGEIGGLPKGIPLEA 227

>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str} Length = 116

 Score = 94.2 bits (235), Expect = 1e-24
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 3/101 (2%)

Query: 105 LDIRVGRIIKAWRHEEAD-SLYVEEVDVG-EAEPRIICSGLVKYVPLEFLQDRSVVVLAN 162
           +DIRVG I++A    EA       ++D G E   +   + +  +   E L  R V+ + N
Sbjct: 16  VDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPESLVGRQVLGVVN 75

Query: 163 LKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
             PR +   +S  + L  +D A+ ++ L    +    GE++
Sbjct: 76  FPPRQIGPFRSEVLTLGFAD-ANGDIVLAAVERPVPNGEKM 115

>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str} Length = 131

 Score = 92.3 bits (230), Expect = 7e-24
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 3/101 (2%)

Query: 105 LDIRVGRIIKAWRHEEAD-SLYVEEVDVG-EAEPRIICSGLVKYVPLEFLQDRSVVVLAN 162
           +DIRVG I++A    EA       ++D G E   +   + +  +   E L  R V+ + N
Sbjct: 31  VDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPESLVGRQVLGVVN 90

Query: 163 LKPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
             PR +   +S  + L  +D A+ ++ L    +    GE++
Sbjct: 91  FPPRQIGPFRSEVLTLGFAD-ANGDIVLAAVERPVPNGEKM 130

>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Length = 795

 Score = 53.6 bits (130), Expect = 2e-08
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 25/104 (24%)

Query: 91  VEDNSVNVKDAANMLD-IRVGRIIKAWRHEEADSLYVEEVDVGEAEPR-IIC------SG 142
           V+     V+  A     + VG +++  +H  AD L V +V+VG      I+C       G
Sbjct: 32  VDG----VEPVAGSFHGVVVGEVVECAQHPNADKLRVTKVNVGGDRLLDIVCGAPNCRQG 87

Query: 143 LVKYVPLEFLQDRSVV--VLAN---LKPRNMRGVKSHGMLLAAS 181
           L   V +      + +  VL     +K   +RG  S GML + S
Sbjct: 88  L--RVAV------ATIGAVLPGDFKIKAAKLRGEPSEGMLCSFS 123

>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp} Length = 199

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 23/113 (20%)

Query: 106 DIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIIC------SGLVKYVPLEFLQDRSVV- 158
              VG +    +H +AD L V  VDV   + +I+C      +G    V +      + V 
Sbjct: 92  KFVVGYVETKDKHPDADKLSVLSVDVATEKLQIVCGAPNVEAGQ--KVVV------AKVG 143

Query: 159 -VLAN---LKPRNMRGVKSHGMLLAAS----DAAHENVELLEPPQGSVPGERI 203
            V+ +   +K   +RGV S GM+ +        A +   ++        G+  
Sbjct: 144 AVMPSGMVIKDAELRGVASSGMICSMKELGLPNAPQEKGIMVLSDDYTVGQSF 196

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 33/131 (25%)

Query: 98  VKDAANMLDIRVGRIIKAWRHEEAD-----SLYVEEVDVGEAEPRIICSGLVKY-VPLE- 150
           V++    L I    ++   + E+        +Y+E+ D    + ++      KY V    
Sbjct: 83  VEEV---LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV----FAKYNVSRLQ 135

Query: 151 -FLQDRSVVVLANLKPRNMRGVKSHGML------LAASDAAHENVELLEPPQGSVPGERI 203
            +L+ R    L  L+P   + V   G+L      +A        V      Q  +  +  
Sbjct: 136 PYLKLRQA--LLELRP--AKNVLIDGVLGSGKTWVALDVCLSYKV------QCKMDFKIF 185

Query: 204 W--FGSQEDKE 212
           W    +    E
Sbjct: 186 WLNLKNCNSPE 196

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 7e-04
 Identities = 39/253 (15%), Positives = 70/253 (27%), Gaps = 84/253 (33%)

Query: 34  PQLPLLRSSPITTITRTDRALLLLRPH-----HP-----KTS---SFCTSP--------- 71
            +  + R  P   + +   ALL LRP             KT      C S          
Sbjct: 127 AKYNVSRLQPYLKLRQ---ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 72  ---ITNANAETTTTS----ESL------PRPAVEDNSVNVKDAANMLDIRVGRIIKAWRH 118
              +   N  +  T     + L         +  D+S N+K   + +   + R++K+  +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 119 EEADSLYVEEVDVGEAEPRII------CSGLVKYVPLEFLQDRSVV-VLANLKPRNMRGV 171
           E  + L V   +V     +        C  L+        + + V   L+     ++   
Sbjct: 244 E--NCLLVLL-NV--QNAKAWNAFNLSCKILLT------TRFKQVTDFLSAATTTHISLD 292

Query: 172 KSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQK------ 225
                L        E   LL            +   +           P +V        
Sbjct: 293 HHSMTLTPD-----EVKSLLLK----------YLDCRPQDL-------PREVLTTNPRRL 330

Query: 226 KKIWELVQPHLKT 238
             I E ++  L T
Sbjct: 331 SIIAESIRDGLAT 343

>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Length = 785

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 27/104 (25%)

Query: 91  VEDNSVNVKDAANMLD-IRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIIC------SGL 143
            +     ++    +   +   R+++A        L    +D G     ++        G+
Sbjct: 32  TDR----IERVFPIPRGVVFARVLEAHPIP-GTRLKRLVLDAGR-TVEVVSGAENARKGI 85

Query: 144 VKYVPLEFLQDRSVV--VLAN----LKPRNMRGVKSHGMLLAAS 181
              V L      ++    L      +  R ++GV+S GM L+  
Sbjct: 86  --GVAL------ALPGTELPGLGQKVGERVIQGVRSFGMALSPR 121

>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Length = 795

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 24/85 (28%)

Query: 109 VGRIIKAWRHEEADSLYVEEVDVGEAEPR-IIC------SGLVKYVPLEFLQDRSVV--V 159
           VG I      +E  S  + +VD+GE EP  I+C      +G   +V +      + V   
Sbjct: 47  VGYIQ----SKEKGSGNICQVDIGEEEPVQIVCGAPNVDAGQ--HVIV------AKVGGR 94

Query: 160 LAN---LKPRNMRGVKSHGMLLAAS 181
           L     +K   +RG +S GM+ +  
Sbjct: 95  LPGGIKIKRAKLRGERSEGMICSLQ 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
1ntg_A	172	Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligas	100.0
1fl0_A	171	Endothelial-monocyte activating polypeptide II; RN	100.0
3ers_X	118	TRNA-binding protein YGJH; oligonucleotide-oligosa	100.0
1gd7_A	109	CSAA protein; oligonucleotide-binding fold, functi	100.0
3g48_A	112	Chaperone CSAA; structural genomics, niaid structu	100.0
2cwp_A	112	Metrs related protein; structural GEN riken struct	100.0
2q2i_A	116	AGR_C_4014P, secretion chaperone; beta barrel, OB	100.0
2nzh_A	113	Protein CSAA; beta barrel, oligonucleotide/oligosa	100.0
1mkh_A	107	Metrs;, C-terminal domain of methionyl-tRNA synthe	100.0
1pyb_A	111	Methionyl-tRNA synthetase beta subunit; oligonucle	100.0
2q2h_A	131	AGR_C_4014P, secretion chaperone, phage-display de	100.0
1pxf_A	111	Hypothetical protein YGJH; oligonucleotide-oligosa	99.97
1rqg_A	722	Methionyl-tRNA synthetase; translation, dimerizati	99.92
2e8g_A	241	Hypothetical protein PH0536; oligonucleotide/oligo	99.92
3bu2_A	199	Putative tRNA-binding protein; structural genomics	99.92
3pco_B	795	Phenylalanyl-tRNA synthetase, beta chain; aminoacy	99.84
1b7y_B	785	Phers, protein (phenylalanyl-tRNA synthetase); enz	99.76
2rhq_B	795	Phenylalanyl-tRNA synthetase beta chain; heterotet	99.74

>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4

Probab=100.00  E-value=1.5e-50  Score=350.07  Aligned_cols=165  Identities=50%  Similarity=0.746  Sum_probs=150.6

Q ss_pred             cccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecceEEe
Q 024343           99 KDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLL  178 (269)
Q Consensus        99 ~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~SeGMLL  178 (269)
                      .||. ++|||||+|+++++||+|||||+|+||+|++++|||+||+.|+|++|+|+|++|++++||||+||||+.|+||||
T Consensus         5 ~df~-kl~irVG~I~~~e~hP~AdkL~v~~VD~G~~~~rqIvsG~~n~~~~eel~G~~Vvvl~nlkp~klrGv~S~GMvL   83 (172)
T 1ntg_A            5 VIPS-RLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLL   83 (172)
T ss_dssp             CCGG-GSCEEEEEEEEEEECTTCSSCEEEEEECSSSSCEEEEESCTTTSCGGGTTTCEEEEECCBCCEEETTEEECCEEC
T ss_pred             cCcc-EeCEEEEEEEEEEECCCCCccEEEEEEeCCCcEEEEEECCCCCCChHHHCCCEEEEEEeEcceeecceecCCEEe
Confidence            4675 599999999999999999999999999998779999999999999999999999999999999999999999976


Q ss_pred             eeec-CCCCcEEEEcCCCCCCCCceEEeCCCCCCcCCCCCCCCCCCccchhHhHhCCCcEECCCeEEEeCCeeeeecccc
Q 024343          179 AASD-AAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGA  257 (269)
Q Consensus       179 sase-~~~~~VelL~pp~~a~~G~rV~~~g~~~~~~~p~~~~p~~~~KkK~we~v~p~L~t~~~gva~y~~~~~~ts~G~  257 (269)
                      |+.+ +++++++|+.||+++++|++++|+|++.  .+|+   +.+++|||+||++||+|+||++|+|+|+|.+|+|++|+
T Consensus        84 cs~~e~~~~~v~il~~~~~~~~G~~v~~~g~~~--~~p~---~~l~~kkk~~e~~~~~l~t~~~~~a~~k~~~~~~~~g~  158 (172)
T 1ntg_A           84 CASIEGINRQVEPLDPPAGSAPGEHVFVKGYEK--GQPD---EELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGS  158 (172)
T ss_dssp             EEEEESSSEEEEECBCCBTCCTTCEEEETTCSS--CCCC---SSBCGGGCHHHHHHTTEEECTTSBEEETTEEEEETTEE
T ss_pred             EecccccCCCeEEEECCCCCCCCCEEEeCCcCC--CCCc---cccCcchhhHHhhCCCcEECCCCEEEECCEEEEeCCCC
Confidence            6654 3356899999999999999999999853  2343   45789999999999999999999999999999999999


Q ss_pred             eEeccCCCcccC
Q 024343          258 VMSRSLKNANIS  269 (269)
Q Consensus       258 ~~~~sl~~~~Is  269 (269)
                      |++++|+|+.|+
T Consensus       159 ~~~~~l~~~~i~  170 (172)
T 1ntg_A          159 ISCKSLKGGNIS  170 (172)
T ss_dssp             CBCSSCTTCEEE
T ss_pred             EEeeecCCCEEE
Confidence            999999999985

>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A

Probab=100.00  E-value=2.3e-47  Score=330.00  Aligned_cols=161  Identities=48%  Similarity=0.782  Sum_probs=146.4

Q ss_pred             ccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecceEEee
Q 024343          100 DAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLA  179 (269)
Q Consensus       100 df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~SeGMLLs  179 (269)
                      ||. ++|||||+|+++++||+|||||+++||+|++++|||+||+.|+|++++|.|+++++++||||+||||+.|||||||
T Consensus         2 df~-kldirVG~I~~~e~hP~AdkL~v~~VD~G~~~~rqIV~G~~n~v~~a~lggk~v~~~~nlkp~klrGv~SeGMvLc   80 (171)
T 1fl0_A            2 DVS-RLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMC   80 (171)
T ss_dssp             CGG-GSCEEEEEEEEEEEETTEEEEEEEEEECSSSSCEEEEECCTTTSCGGGGTTEEEEEECCSCCEESSSCEECCEECE
T ss_pred             Ccc-EEeEEEEEEEEEEECCCCCccEEEEEEcCCCcEEEEEECCCceEcchhcCCEEEcCceEEeeEEEccEeccCEEEE
Confidence            575 5999999999999999999999999999987799999999999999999999999899999999999999999877


Q ss_pred             eecCCCCcEEEEcCCCCCCCCceEEeCCCCCCcCCCCCCCCCCCccchhHhHhCCCcEECCCeEEEeCCeeee-ecccce
Q 024343          180 ASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQ-TSAGAV  258 (269)
Q Consensus       180 ase~~~~~VelL~pp~~a~~G~rV~~~g~~~~~~~p~~~~p~~~~KkK~we~v~p~L~t~~~gva~y~~~~~~-ts~G~~  258 (269)
                      +.++  +++.|+.||+++++|+++.|+|++.   +|+   +.+++|||+||++||+|+||++|+|+|+|.+|+ |++|+|
T Consensus        81 s~~~--~~~~il~~~~~~~~G~~v~~~g~~~---~p~---~~l~~kkk~~e~~~~~l~t~~~~va~~k~~~~~~~~~g~~  152 (171)
T 1fl0_A           81 ASSP--EKIEILAPPNGSVPGDRITFDAFPG---EPD---KELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVC  152 (171)
T ss_dssp             EEET--TEEEECBCCTTCCTTCBCCCTTSCC---CCC---SSCCTTTCTHHHHGGGEEECTTSBEEETTEECEETTTEEC
T ss_pred             EecC--CCEEEEECCCCCCCCCEEEeCCCCC---CCc---cccCchhhhHHhhCCCcEECCCeEEEECCEEEEECCCccE
Confidence            7653  4688999999999999999999863   343   346799999999999999999999999999996 577999


Q ss_pred             EeccCCCcccC
Q 024343          259 MSRSLKNANIS  269 (269)
Q Consensus       259 ~~~sl~~~~Is  269 (269)
                      ++++|+|+.|+
T Consensus       153 ~~~~l~~~~~~  163 (171)
T 1fl0_A          153 RAQTMSNSGIK  163 (171)
T ss_dssp             BCSSCCSCEEC
T ss_pred             EeeecCCCeEe
Confidence            99999999874

>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4

Probab=100.00  E-value=6.7e-35  Score=235.46  Aligned_cols=107  Identities=28%  Similarity=0.373  Sum_probs=100.1

Q ss_pred             ceeecccCCcCCeEEEEEEEEEeCCCCCce-EEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceec
Q 024343           95 SVNVKDAANMLDIRVGRIIKAWRHEEADSL-YVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKS  173 (269)
Q Consensus        95 ~isi~df~~~ldIrVGkIveve~HP~ADKL-yv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~S  173 (269)
                      +|+|+||. ++|||||+|+++++||+|||| |+++||+|++++|||+||++|+|.+++|.|++|++++||||+||||+.|
T Consensus         1 ~i~~~df~-k~di~VG~I~~~e~hp~adkL~~~~~Vd~G~~~~rqIv~G~~n~~~~~~l~G~~v~~~~nlkp~klrGv~S   79 (109)
T 1gd7_A            1 MTPLEAFQ-ILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNLGAKRVAGFLS   79 (109)
T ss_dssp             CCHHHHHH-HSCEEEEEEEEEEECTTCSSCCEEEEEECGGGCEEEEEECCTTTCCHHHHTTCEEEEECSSCCEEETTEEE
T ss_pred             CcChHHhh-ccCEEEEEEEEEEECCCCccccEEEEEEcCCCcEEEEEECCccccChhhcCCCEEEeeEecCceEeccEee
Confidence            47899997 599999999999999999999 9999999986789999999999999999999999999999999999999


Q ss_pred             ceEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343          174 HGMLLAASDAAHENVELLEPPQGSVPGERI  203 (269)
Q Consensus       174 eGMLLsase~~~~~VelL~pp~~a~~G~rV  203 (269)
                      ||||||++++ ++++.+|.||+++++|+++
T Consensus        80 ~GMl~sa~~~-~~~i~~l~~~~~~~~G~~i  108 (109)
T 1gd7_A           80 EVLVLGVPDE-AGRVVLLAPDREVPLGGKV  108 (109)
T ss_dssp             CSEECEEECT-TSCEEEEEESSCCCTTCBC
T ss_pred             cCEEEEeecC-CCcEEEEeCCCCCCCCCCC
Confidence            9999999854 3579999999999999986

>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} SCOP: b.40.4.4

Probab=100.00  E-value=7.9e-35  Score=236.29  Aligned_cols=108  Identities=28%  Similarity=0.373  Sum_probs=101.4

Q ss_pred             CceeecccCCcCCeEEEEEEEEEeCCCCCc-eEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceeccee
Q 024343           94 NSVNVKDAANMLDIRVGRIIKAWRHEEADS-LYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVK  172 (269)
Q Consensus        94 ~~isi~df~~~ldIrVGkIveve~HP~ADK-Lyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~  172 (269)
                      +.|+|+||. ++|||||+|+++++||+||| ||+++||+|+.++|||+||+.++|.+++|+|++|++++||||+||||+.
T Consensus         3 ~~i~~ddF~-kldirVG~I~~~e~hp~adkpL~~~~Vd~G~~~~~qIv~G~~~~~~~~~l~G~~v~~~~nlkp~kirGv~   81 (112)
T 3g48_A            3 AMANFEDFL-TLDLRIGTVTHAEEFKEARVPAIRLEIDFGELGMKQSSAQITKRYNPEDLIGQQIVAVVNFPPKRVAGFK   81 (112)
T ss_dssp             CCCCHHHHH-TCCEEEEEEEEEEEEEETTEEEEEEEEECGGGCEEEEEECCTTTCCHHHHTTCEEEEECCSCCEEETTEE
T ss_pred             ceeCHHHhh-ceEEEEEEEEEEEECCCCCCeEEEEEEEcCCCcEEEEEeCCccccChhHcCCCEEEEEccccceeECCee
Confidence            569999997 59999999999999999999 9999999998678999999999999999999999999999999999999


Q ss_pred             cceEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343          173 SHGMLLAASDAAHENVELLEPPQGSVPGERI  203 (269)
Q Consensus       173 SeGMLLsase~~~~~VelL~pp~~a~~G~rV  203 (269)
                      |||||||+++++ ..++|+.||.++++|+||
T Consensus        82 S~GMl~s~~~~~-~~~~ll~p~~~~~~G~~i  111 (112)
T 3g48_A           82 SEVLVLGGVPEA-GDVVLLQPNMELPNGTKI  111 (112)
T ss_dssp             ECSEECEEEEET-TEEEECCCSSCCCTTCBC
T ss_pred             cCcEEeEeecCC-CCEEEEeCCCCCCCCCCc
Confidence            999999998753 358999999999999986

>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii}

Probab=100.00  E-value=5.9e-34  Score=230.92  Aligned_cols=106  Identities=30%  Similarity=0.488  Sum_probs=99.4

Q ss_pred             ceeecccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecc
Q 024343           95 SVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSH  174 (269)
Q Consensus        95 ~isi~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~Se  174 (269)
                      +|+|+||. +++||||+|+++++||+|||||+|+||+|+ ++|||+||++|+|.+++|.|++|++++||||+||||+.||
T Consensus         6 ~i~~~df~-k~~lrVG~I~~~e~hp~adkL~~~~VD~G~-~~rqIV~G~~n~~~~~~l~G~~v~~~~nlkp~klrGv~S~   83 (112)
T 2cwp_A            6 LYDVDEFW-KFQMKVGLVKKAEKIKRTKKLIKLIVDFGN-EERTIVTGIADQIPPEELEGKKFIFVVNLKPKKFSGVESQ   83 (112)
T ss_dssp             CCCHHHHH-TSCEEEEEEEEEEECTTCSSCEEEEEECSS-CEEEEEECCTTTSCGGGTTTCEEEEECSSCCEEETTEEEC
T ss_pred             CcCHHHhh-cCCEEEEEEEEEEECCCCCccEEEEEEeCC-eEEEEEECCccccChhhcCCCEEECeEEEccceeCCEecc
Confidence            58999997 599999999999999999999999999998 7899999999999999999999999999999999999999


Q ss_pred             eEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343          175 GMLLAASDAAHENVELLEPPQGSVPGERI  203 (269)
Q Consensus       175 GMLLsase~~~~~VelL~pp~~a~~G~rV  203 (269)
                      |||||+++++ .++.|+.||+++++|+++
T Consensus        84 GMl~sa~~~~-~~~~il~~~~~~~~G~~i  111 (112)
T 2cwp_A           84 GMLILAETED-GKVYLIPVPEEVPVGARV  111 (112)
T ss_dssp             SEECCEECTT-SCEECCBCCTTSCTTCEE
T ss_pred             cEEEEeecCC-CcEEEEECCCCCCCCCCC
Confidence            9999998543 467899999999999987

>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str}

Probab=100.00  E-value=2.4e-34  Score=234.50  Aligned_cols=108  Identities=24%  Similarity=0.314  Sum_probs=100.7

Q ss_pred             CceeecccCCcCCeEEEEEEEEEeCCCCCce-EEEEEEcCCC-CcEEEEeCCCCcccccccCCCEEEEEEeeccceecce
Q 024343           94 NSVNVKDAANMLDIRVGRIIKAWRHEEADSL-YVEEVDVGEA-EPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGV  171 (269)
Q Consensus        94 ~~isi~df~~~ldIrVGkIveve~HP~ADKL-yv~kVDvGe~-e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv  171 (269)
                      ++|+|+||. ++|||||+|+++++||+|||| |+|+||+|++ ++|||+||++|+|.+++|.|++|++++||||+||||+
T Consensus         6 ~~i~~~df~-k~~lrVG~I~~~e~hp~adkL~~~~~VD~G~~~~~rqIv~G~~n~~~~~~l~G~~v~~~~nlkp~kirGv   84 (116)
T 2q2i_A            6 GEISYADFE-KVDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPESLVGRQVLGVVNFPPRQIGPF   84 (116)
T ss_dssp             CCCCHHHHH-TSCEEEEEEEEEEECTTSSSCCEEEEEECHHHHCEEEEEESCTTTCCHHHHTTCEEEEECCSCCEEETTE
T ss_pred             ceeCHHHhh-cCCEEEEEEEEEEECCCCCCccEEEEEEeCCCCcEEEEEECCcCccChhhcCCCEEECceEEcceEECCE
Confidence            359999997 599999999999999999999 9999999974 6899999999999999999999999999999999999


Q ss_pred             ecceEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343          172 KSHGMLLAASDAAHENVELLEPPQGSVPGERI  203 (269)
Q Consensus       172 ~SeGMLLsase~~~~~VelL~pp~~a~~G~rV  203 (269)
                      .|||||||++++ ++++.+|.||+++++|+++
T Consensus        85 ~S~GMl~sa~~~-~~~i~ll~p~~~~~~G~~i  115 (116)
T 2q2i_A           85 RSEVLTLGFADA-NGDIVLAAVERPVPNGEKM  115 (116)
T ss_dssp             EECCEECEEECT-TSCEEEEEESSCCCTTCBC
T ss_pred             EeCCEEEEeecC-CCcEEEEeCCCCCCCCCCC
Confidence            999999999854 3579999999999999986

>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A

Probab=100.00  E-value=9.6e-35  Score=235.86  Aligned_cols=109  Identities=28%  Similarity=0.362  Sum_probs=100.9

Q ss_pred             CceeecccCCcCCeEEEEEEEEEeCCCCCce-EEEEEEcCCC-CcEEEEeCCCCcccccccCCCEEEEEEeeccceecce
Q 024343           94 NSVNVKDAANMLDIRVGRIIKAWRHEEADSL-YVEEVDVGEA-EPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGV  171 (269)
Q Consensus        94 ~~isi~df~~~ldIrVGkIveve~HP~ADKL-yv~kVDvGe~-e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv  171 (269)
                      ++|+|+||. ++|||||+|+++++||+|||| |+|+||+|++ ++|||+||++|+|.+++|.|++|++++||||+||||+
T Consensus         3 ~~i~~~df~-k~~lrVG~I~~~e~hp~adkL~~~~~Vd~G~~~~~rqIv~G~~n~~~~~~l~G~~v~~~~nlkp~kirGv   81 (113)
T 2nzh_A            3 HMAVIDDFE-KLDIRTGTIVKAEEFPEARVPAIKLVIDFGTEIGIKQSSAQITKRYKPEGLINKQVIAVVNFPPRRIAGF   81 (113)
T ss_dssp             -CHHHHHHH-HCCEEEEEEEEEEEETTSSSCEEEEEEECHHHHCEEEEEECCTTTCCHHHHTTCEEEEETTSCCEEETTE
T ss_pred             cccCHHHhh-cCCEEEEEEEEEEECCCCCcccEEEEEEeCCCCcEEEEEECCCcccCHHHhCCCEEEeeEEEcceEECCE
Confidence            459999997 599999999999999999999 9999999985 6899999999999999999999999999999999999


Q ss_pred             ecceEEeeeecCCCCcEEEEcCCCCCCCCceEE
Q 024343          172 KSHGMLLAASDAAHENVELLEPPQGSVPGERIW  204 (269)
Q Consensus       172 ~SeGMLLsase~~~~~VelL~pp~~a~~G~rV~  204 (269)
                      .|||||||++++ +++++++.||+++++|+++.
T Consensus        82 ~S~GMl~sa~~~-~~~i~ll~~~~~~~~G~~i~  113 (113)
T 2nzh_A           82 KSEVLVLGGIPG-QGDVVLLQPDQPVPNGTKIG  113 (113)
T ss_dssp             EECSEECEEEEE-TTEEEEEEESSCCCTTCEEC
T ss_pred             EeCCEEEEeecC-CCCEEEEECCCCCCCCCCCC
Confidence            999999999874 35788999999999999973

>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4

Probab=100.00  E-value=4e-34  Score=230.08  Aligned_cols=105  Identities=48%  Similarity=0.716  Sum_probs=98.4

Q ss_pred             ceeecccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecc
Q 024343           95 SVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSH  174 (269)
Q Consensus        95 ~isi~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~Se  174 (269)
                      +|+|+||. ++|||||+|+++++||+|||||+++||+|+ ++|||+||++|+|.+++|.|++|++++||||+||||+.||
T Consensus         2 ~i~~~df~-k~dl~VG~I~~~e~hp~adkL~~~~Vd~G~-~~rqIv~G~~n~~~~~al~G~~v~~~~nlkp~klrGv~S~   79 (107)
T 1mkh_A            2 YVKFDDFA-KLDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQ   79 (107)
T ss_dssp             CCCHHHHH-TSCEEEEEEEEEEECTTCSSCEEEEEECSS-CEEEEEECCTTTCCHHHHTTCEEEEETTSCCEEC-CCEEC
T ss_pred             EecHHHhh-ccCEEEEEEEEEEECCCCCccEEEEEEeCC-eEEEEEeCCccccChhhcCCCEEECCeeEcceEEcCeeec
Confidence            58999997 599999999999999999999999999998 6899999999999999999999999999999999999999


Q ss_pred             eEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343          175 GMLLAASDAAHENVELLEPPQGSVPGERI  203 (269)
Q Consensus       175 GMLLsase~~~~~VelL~pp~~a~~G~rV  203 (269)
                      |||||++  +++++.+|.||+++++|+++
T Consensus        80 GMl~s~~--~~~gi~~l~p~~~~~~G~~i  106 (107)
T 1mkh_A           80 GMLLAAD--DGERVALLMPDKEVKLGAKV  106 (107)
T ss_dssp             CCBCEEE--CSSCEEECCCSSCCCTTCEE
T ss_pred             cEEEEcc--CCCcEEEEeCCCCCCCCCCC
Confidence            9999996  35689999999999999987

>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4

Probab=100.00  E-value=3.2e-34  Score=231.98  Aligned_cols=108  Identities=34%  Similarity=0.620  Sum_probs=99.6

Q ss_pred             CCCceeecccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecce
Q 024343           92 EDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGV  171 (269)
Q Consensus        92 ~~~~isi~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv  171 (269)
                      .+++|+|+||. +++||||+|+++++||+|||||+++||+|+ ++|||+||+.|+|.+++|.|++|++++||||+||||+
T Consensus         3 ~~~~i~~~df~-k~~lrVG~I~~~e~hp~adkL~~~~Vd~G~-~~rqIv~G~~n~~~~~al~G~~v~~~~nlkp~klrGv   80 (111)
T 1pyb_A            3 EKALIGIEDFL-KVDLRVAKVLSAERVEGSEKLLKLTLSLGD-EERTVVAGIAKYYTPEELVGKKIVIVANLKPRKIFGI   80 (111)
T ss_dssp             --CCCCHHHHH-HSCEEEEEEEEEECCSSCSCCEEEEEEETT-EEEEEEECCTTTSCHHHHTTCEEEEETTSCSSCTTSC
T ss_pred             cccccCHHHhc-cCCEEEEEEEEEEECCCCCccEEEEEEeCC-cEEEEEECCccccCccccCCCEEECcEeecceEEccE
Confidence            45679999997 599999999999999999999999999998 7899999999999999999999999999999999999


Q ss_pred             ecceEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343          172 KSHGMLLAASDAAHENVELLEPPQGSVPGERI  203 (269)
Q Consensus       172 ~SeGMLLsase~~~~~VelL~pp~~a~~G~rV  203 (269)
                      .|||||||++++  +.+.|+.||+++++|+++
T Consensus        81 ~S~GMl~sa~e~--~~~~il~~~~~~~~G~~v  110 (111)
T 1pyb_A           81 ESQGMILAASDG--ENLSVIVPDRDVKEGAKL  110 (111)
T ss_dssp             CBSSEECEEECS--SCEEEEEESSCCCTTEEC
T ss_pred             eeccEEEEeccC--CceEEEECCCCCCCCCCC
Confidence            999999999874  356788899999999986

>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str}

Probab=100.00  E-value=1.2e-33  Score=235.10  Aligned_cols=107  Identities=24%  Similarity=0.316  Sum_probs=100.3

Q ss_pred             ceeecccCCcCCeEEEEEEEEEeCCCCCce-EEEEEEcCCC-CcEEEEeCCCCcccccccCCCEEEEEEeeccceeccee
Q 024343           95 SVNVKDAANMLDIRVGRIIKAWRHEEADSL-YVEEVDVGEA-EPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVK  172 (269)
Q Consensus        95 ~isi~df~~~ldIrVGkIveve~HP~ADKL-yv~kVDvGe~-e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~  172 (269)
                      +|+|+||. ++|||||+|+++++||+|||| |+|+||+|++ ++|||+||+.|+|.+++|.|++|++++||||+||||+.
T Consensus        22 ~i~~~df~-k~~lrVG~I~~~e~hP~AdkL~~v~~VD~G~~~~~rqIV~G~~n~~~p~al~G~~v~~~~nlkp~kirGv~  100 (131)
T 2q2h_A           22 EISYADFE-KVDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPESLVGRQVLGVVNFPPRQIGPFR  100 (131)
T ss_dssp             CCCHHHHH-TSCEEEEEEEEEEECTTCSSCCEEEEEECHHHHCEEEEEESCTTTCCHHHHTTCEEEEECCSCCEEETTEE
T ss_pred             ccCHHHhh-ccCEEEEEEEEEEECCCCCcccEEEEEEECCCCcEEEEEECCCcccChhhcCCCEEECceEEcceEECCEE
Confidence            59999997 599999999999999999999 9999999985 68999999999999999999999999999999999999


Q ss_pred             cceEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343          173 SHGMLLAASDAAHENVELLEPPQGSVPGERI  203 (269)
Q Consensus       173 SeGMLLsase~~~~~VelL~pp~~a~~G~rV  203 (269)
                      |||||||++++ ++++.+|.||+++++|+++
T Consensus       101 SeGMl~sa~~~-~~gi~lL~p~~~~~~G~~i  130 (131)
T 2q2h_A          101 SEVLTLGFADA-NGDIVLAAVERPVPNGEKM  130 (131)
T ss_dssp             ECCEECEEECT-TSCEEEEEESSCCCTTCBC
T ss_pred             eCcEEEEeecC-CCcEEEEeCCCCCCCCCCC
Confidence            99999999854 3579999999999999986

>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} PDB: 3ers_X

Probab=99.97  E-value=4.8e-33  Score=225.25  Aligned_cols=109  Identities=39%  Similarity=0.556  Sum_probs=98.4

Q ss_pred             CceeecccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceec
Q 024343           94 NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKS  173 (269)
Q Consensus        94 ~~isi~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~S  173 (269)
                      ++|+|+||. ++|||||+|+++++||+|||||+|+||+|+ +.|||+||+..+|++++|.|++|++++||||+||||+.|
T Consensus         2 ~~i~~~df~-k~dlrVG~I~~~e~hp~adkL~v~~Vd~G~-~~~qiv~g~a~~~~~~~l~G~~v~~~~nikp~klrGv~S   79 (111)
T 1pxf_A            2 ETVAYADFA-RLEMRVGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETS   79 (111)
T ss_dssp             CCSSHHHHH-HSCEEEEEEEEEECCTTCTTCCEEEEEETT-EEEEEECCCCTTSHHHHHTTCEEEEETTCSCCCBTTBCC
T ss_pred             CccCHHHhh-cccEEEEEEEEEEECCCCCeEEEEEEEeCC-CceEEEEeccCcccchhcCCCEEEEEEEEecccCCCEec
Confidence            369999997 599999999999999999999999999997 689999998888899999999999999999999999999


Q ss_pred             ceEEeeeecCCCCcEEEEcCCCCCCCCceEE
Q 024343          174 HGMLLAASDAAHENVELLEPPQGSVPGERIW  204 (269)
Q Consensus       174 eGMLLsase~~~~~VelL~pp~~a~~G~rV~  204 (269)
                      ||||||+.++++..+.|+.|+.++++|++|.
T Consensus        80 ~GMlL~a~~ed~~~~~l~~p~~~~~~G~~vv  110 (111)
T 1pxf_A           80 ECMLLCAETDDGSESVLLTPERMMPAGVRVV  110 (111)
T ss_dssp             CCCBCEEECTTSCCEEECCCSSCCCTTCBCC
T ss_pred             ceEEEEecccCCCcEEEEcCCCCCCCCCEec
Confidence            9999777765544566888888899999874

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1

Probab=99.92  E-value=6.4e-27  Score=236.84  Aligned_cols=105  Identities=49%  Similarity=0.745  Sum_probs=0.0

Q ss_pred             ceeecccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecc
Q 024343           95 SVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSH  174 (269)
Q Consensus        95 ~isi~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~Se  174 (269)
                      +|+|+||.+ +|||||+|++|++||+|||||+|+||+|+ ++||||||++|+|.+++|+|++|++++||||+||||++||
T Consensus       617 ~i~~~~f~k-~~~~vg~i~~~~~~p~adkl~~~~vd~G~-~~~~iv~g~~~~~~~~~l~G~~v~~~~nl~~~k~~g~~S~  694 (722)
T 1rqg_A          617 YVKFDDFAK-LDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQ  694 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccHhHhhh-cceEEEEEEEEEeCCCCCcceEEEEEcCC-ceEEEEECCcccCCHHHcCCCEEeCeeEEcceeeCCcccC
Confidence            699999974 99999999999999999999999999998 5899999999999999999999999999999999999999


Q ss_pred             eEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343          175 GMLLAASDAAHENVELLEPPQGSVPGERI  203 (269)
Q Consensus       175 GMLLsase~~~~~VelL~pp~~a~~G~rV  203 (269)
                      |||||++++  ++|.+|.|+.++++|++|
T Consensus       695 gM~~~~~~~--~~i~~l~~~~~~~~G~~~  721 (722)
T 1rqg_A          695 GMLLAADDG--ERVALLMPDKEVKLGAKV  721 (722)
T ss_dssp             -----------------------------
T ss_pred             eEEEEeeCC--CcEEEeCCCCCCCCCCCC
Confidence            999999643  589899888899999987

>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii}

Probab=99.92  E-value=1.1e-25  Score=203.55  Aligned_cols=110  Identities=26%  Similarity=0.380  Sum_probs=86.5

Q ss_pred             cccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecceEEe
Q 024343           99 KDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLL  178 (269)
Q Consensus        99 ~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~SeGMLL  178 (269)
                      ++|. ++|||||+|+++++||+|||||+|+||+|+ ++|||+||+.||.     .| .+++++||+|++|||+.|+||||
T Consensus       131 ~~f~-kldirVGkIl~ve~hP~AdKL~v~~VD~G~-~~rqIV~Ga~n~~-----~G-~vVvVAnLpp~klrGv~SeGMlc  202 (241)
T 2e8g_A          131 DPVI-AVDIVVGEVMSVGKHPSADRLLVTNVNIGE-RAVTVVTNDLTVK-----EG-NRVAVALLPPRNFFGIVSEGMFL  202 (241)
T ss_dssp             CGGG-GSCEEEEEEEEEEECTTCTTCEEEEEECSS-CEEEEEESCTTCC-----TT-CEEEEECCCCEEETTEEECCEEC
T ss_pred             Cccc-ccCEEEEEEEEEEECCCCCccEEEEEEeCC-ceEEEEECCcccc-----CC-CEEEEEECCCcccCCcccCcEEe
Confidence            4665 589999999999999999999999999998 6899999999987     47 67778999999999999999999


Q ss_pred             eeecCCCCcEEEEcCCCCCCCCceEEeCCCCCCcCCCCCCCCCCCccchhHhHhCC
Q 024343          179 AASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQP  234 (269)
Q Consensus       179 sase~~~~~VelL~pp~~a~~G~rV~~~g~~~~~~~p~~~~p~~~~KkK~we~v~p  234 (269)
                      |+++    +  +...+    .|..+.|   +  ...|+   ..+|||||+||+++.
T Consensus       203 sa~E----g--l~~~~----~G~I~~L---p--~~~p~---~~lnpkkk~~e~~~~  240 (241)
T 2e8g_A          203 GAGE----G--VLKNV----KGEIGGL---P--KGIPL---EALNETRNAVEAFLK  240 (241)
T ss_dssp             EETT----E--ECCBC----BSCTTSC---C--BSCCG---GGGHHHHHHHHHHHC
T ss_pred             ECcc----C--CCCCC----CCcEEEC---C--CCCch---hhcCchhhHHHHHhc
Confidence            9975    3  22222    2422122   1  12222   357899999999875

>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp}

Probab=99.92  E-value=3.8e-25  Score=195.22  Aligned_cols=91  Identities=27%  Similarity=0.369  Sum_probs=82.1

Q ss_pred             CCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEE---------Eeeccceecceecce
Q 024343          105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVL---------ANLKPRNMRGVKSHG  175 (269)
Q Consensus       105 ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl---------~NLKprkirGv~SeG  175 (269)
                      -++|||+|+++++||+|||||+|+||+|+ ++|||+||++|++     .|++|+++         +||||+||||+.|+|
T Consensus        91 ~~vvVG~V~~~e~hP~ADkL~v~~VdvG~-~~~qIV~Ga~n~~-----~G~kVvva~~Ga~lp~g~nIk~~KlrGv~S~G  164 (199)
T 3bu2_A           91 PKFVVGYVETKDKHPDADKLSVLSVDVAT-EKLQIVCGAPNVE-----AGQKVVVAKVGAVMPSGMVIKDAELRGVASSG  164 (199)
T ss_dssp             CSEEEEEEEEEEECTTTSSCEEEEEECSS-CEEEEEECCTTCC-----TTCEEEEECTTCBCTTSCBCCEEEETTEEEES
T ss_pred             CCeEEEEEEEEEECCCCCEEEEEEEEeCC-EEEEEEeCCchhh-----CCCEEEEEecCCCccCCceEeeeEEcCceecc
Confidence            47999999999999999999999999995 7899999999997     89999998         899999999999999


Q ss_pred             EEeeeec----C--CCCcEEEEcCCCCCCCCceE
Q 024343          176 MLLAASD----A--AHENVELLEPPQGSVPGERI  203 (269)
Q Consensus       176 MLLsase----~--~~~~VelL~pp~~a~~G~rV  203 (269)
                      ||||+++    +  ++.++.++  |+++++|+++
T Consensus       165 MlcSa~ELGl~~~~~~~gI~~l--~~~~~~G~~v  196 (199)
T 3bu2_A          165 MICSMKELGLPNAPQEKGIMVL--SDDYTVGQSF  196 (199)
T ss_dssp             EECCTTTTTCSSCBSCCSCCEE--CTTSCTTSBS
T ss_pred             EEeehhhcCCCcccCCCeEEEC--CCCCCCCCcc
Confidence            9999986    2  34565444  7889999997

>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}

Probab=99.84  E-value=3.3e-21  Score=197.78  Aligned_cols=91  Identities=31%  Similarity=0.421  Sum_probs=84.0

Q ss_pred             CeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEE---------EeeccceecceecceE
Q 024343          106 DIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVL---------ANLKPRNMRGVKSHGM  176 (269)
Q Consensus       106 dIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl---------~NLKprkirGv~SeGM  176 (269)
                      +|+||+|+++++||++|||++|+||+|+++++|||||++|+.     +|++|+|+         +|||++||||+.|+||
T Consensus        44 ~~~vg~v~~~~~hp~adkL~~~~vd~G~~~~~~iv~ga~n~~-----~g~~v~va~~Ga~l~~~~~ik~~k~rG~~S~GM  118 (795)
T 3pco_B           44 GVVVGEVVECAQHPNADKLRVTKVNVGGDRLLDIVCGAPNCR-----QGLRVAVATIGAVLPGDFKIKAAKLRGEPSEGM  118 (795)
T ss_dssp             CEEEEEEEEEECCTTCSSCCEEEEECSSSSCEEEECCCSSCC-----TTCEEEEECTTCBCTTSCBCCCEESSSSEESSE
T ss_pred             CeEEEEEEEEEecCCCCeEEEEEEEcCCCcEEEEEeCCcccc-----CCCEEEEEecCcCcCCCceEcccccCCeecCcE
Confidence            599999999999999999999999999988999999999998     89999998         7999999999999999


Q ss_pred             Eeeeec----CCCCcEEEEcCCCCCCCCceE
Q 024343          177 LLAASD----AAHENVELLEPPQGSVPGERI  203 (269)
Q Consensus       177 LLsase----~~~~~VelL~pp~~a~~G~rV  203 (269)
                      ||+++|    ++++|+.+|  |+++++|+++
T Consensus       119 lcs~~elgl~~~~~gi~~l--~~~~~~G~~~  147 (795)
T 3pco_B          119 LCSFSELGISDDHSGIIEL--PADAPIGTDI  147 (795)
T ss_dssp             ECCSGGGTSCCCCSSCCEE--CSSCCTTSBH
T ss_pred             ecchhhcCCCCCCCeEEEC--CccccCCCCH
Confidence            999986    456787555  7889999998

>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*

Probab=99.76  E-value=1.6e-19  Score=185.17  Aligned_cols=97  Identities=21%  Similarity=0.246  Sum_probs=81.4

Q ss_pred             CCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcc----cccccCCCEEEE-EEeeccceecceecceEEee
Q 024343          105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYV----PLEFLQDRSVVV-LANLKPRNMRGVKSHGMLLA  179 (269)
Q Consensus       105 ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~----~~EeL~GkkVvV-l~NLKprkirGv~SeGMLLs  179 (269)
                      -+++||+|+++++||+| ||++|+||+|  ++||||||++|++    -+..+.|++++. .+||||+||||+.|+||||+
T Consensus        43 ~~~~vg~V~~~~~hp~a-kL~v~~Vd~G--~~~qIv~Ga~n~~~g~~v~~a~~G~~l~~~~~~ik~~klrGv~S~GMlcs  119 (785)
T 1b7y_B           43 RGVVFARVLEAHPIPGT-RLKRLVLDAG--RTVEVVSGAENARKGIGVALALPGTELPGLGQKVGERVIQGVRSFGMALS  119 (785)
T ss_dssp             TTEEEEEEEEEEECTTS-SCEEEEEESS--SEEEEEECCTTCCTTCEEEEECTTCCCSSCSSCCCCEECSSSEECSEECC
T ss_pred             CCeEEEEEEEEEECCCC-eEEEEEEecC--CEEEEEeCCCccCCCCEeEEEcCCCEeecCceEEeeeEeccccccceeee
Confidence            36999999999999999 9999999999  6899999999995    444555555554 57999999999999999999


Q ss_pred             eec----CCCCcEEEEcCCCCC-CCCceE--EeC
Q 024343          180 ASD----AAHENVELLEPPQGS-VPGERI--WFG  206 (269)
Q Consensus       180 ase----~~~~~VelL~pp~~a-~~G~rV--~~~  206 (269)
                      +++    +++.++  +.+|+++ ++|+++  +++
T Consensus       120 ~~eLgl~~~~~gi--~~l~~~~~~~G~~~~~~l~  151 (785)
T 1b7y_B          120 PRELGVGEYGGGL--LEFPEDALPPGTPLSEAWP  151 (785)
T ss_dssp             HHHHTSCSCCSSC--CCBCTTSSCTTCBGGGTSC
T ss_pred             HHHhCCCCCCCce--EECccccccCCCcHHHccC
Confidence            985    445665  5557888 999999  555

>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*

Probab=99.74  E-value=2e-18  Score=177.02  Aligned_cols=87  Identities=26%  Similarity=0.415  Sum_probs=79.1

Q ss_pred             CeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEE---------EeeccceecceecceE
Q 024343          106 DIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVL---------ANLKPRNMRGVKSHGM  176 (269)
Q Consensus       106 dIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl---------~NLKprkirGv~SeGM  176 (269)
                      +++||+|++|++|    ||++|+||+|+++++|||||++|+.     .|++|+|+         +|||++||||+.|+||
T Consensus        44 ~~vvg~v~~~~~h----kL~~~~vd~g~~~~~~Iv~ga~n~~-----~g~~v~va~~Ga~lpg~~~ik~~klrG~~S~GM  114 (795)
T 2rhq_B           44 NLVVGYIQSKEKG----SGNICQVDIGEEEPVQIVCGAPNVD-----AGQHVIVAKVGGRLPGGIKIKRAKLRGERSEGM  114 (795)
T ss_dssp             EEEEEEEEEEECS----SSCEEEEECSSSSCEEEECCCTTCC-----TTCEEEEEEEEEEETTTEECCCEEETTEEECSE
T ss_pred             CeEEEEEEEEEEE----eEEEEEEEcCCCeEEEEEeCCchhh-----CCCEEEEEecCcCcCCCceEcceeecCccccce
Confidence            6999999999999    9999999999877899999999997     99999999         8999999999999999


Q ss_pred             Eeeeec----CC------CCcEEEEcCCCCCCCCceE
Q 024343          177 LLAASD----AA------HENVELLEPPQGSVPGERI  203 (269)
Q Consensus       177 LLsase----~~------~~~VelL~pp~~a~~G~rV  203 (269)
                      |||++|    ++      +.++  +.+|+++++|+++
T Consensus       115 lcs~~elGl~~~~~~~~~~~gi--~~l~~~~~~G~~~  149 (795)
T 2rhq_B          115 ICSLQEIGISSNVVPKAYENGI--FVFPTEVEPGTDA  149 (795)
T ss_dssp             ECCSGGGTCCGGGSCHHHHTSC--CBCSSCCCTTSBH
T ss_pred             eeeHHHcCCCcccccccCCCeE--EECCCCCcCCCch
Confidence            999986    33      4675  4558889999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d1ntga_	171	b.40.4.4 (A:) C-terminal domain of metazoan tyrosy	4e-50
d1fl0a_	164	b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId	3e-43
d1pxfa_	111	b.40.4.4 (A:) Structure-specific tRNA-binding prot	4e-28
d1mkha_	107	b.40.4.4 (A:) C-terminal domain of methionyl-tRNA	7e-28
d1pyba_	107	b.40.4.4 (A:) Structure-specific tRNA-binding prot	7e-27
d1gd7a_	109	b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermo	5e-24

>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  160 bits (406), Expect = 4e-50
 Identities = 80/170 (47%), Positives = 105/170 (61%), Gaps = 6/170 (3%)

Query: 101 AANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVL 160
             + LDIRVG+II   +H +ADSLYVE++DVGEAEPR + SGLV++VP E LQDR VVVL
Sbjct: 5   IPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVL 64

Query: 161 ANLKPRNMRGVKSHGMLLAAS-DAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPAS 219
            NLKP+ MRGV+S GMLL AS +  +  VE L+PP GS PGE ++    E  +       
Sbjct: 65  CNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQ-----PD 119

Query: 220 PNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSRSLKNANIS 269
                KKK++E +Q   K     +A   +    T  G++  +SLK  NIS
Sbjct: 120 EELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNIS 169

>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: EMAP II
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (360), Expect = 3e-43
 Identities = 77/165 (46%), Positives = 101/165 (61%), Gaps = 9/165 (5%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           LD+R+G II A +H +ADSLYVEEVDVGE  PR + SGLV +VPLE +Q+R V++L NLK
Sbjct: 6   LDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLK 65

Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQ 224
           P  MRGV S  M++ AS    E +E+L PP GSVPG+RI F   +    +P         
Sbjct: 66  PAKMRGVLSQAMVMCASSP--EKIEILAPPNGSVPGDRITF---DAFPGEPDKELN---P 117

Query: 225 KKKIWELVQPHLKTDASLVA-MLGEHLMQTSAGAVMSRSLKNANI 268
           KKKIWE +QP L T+   VA   G        G   ++++ N+ I
Sbjct: 118 KKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGI 162

>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Escherichia coli [TaxId: 562]} Length = 111

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: Structure-specific tRNA-binding protein TRBP111
species: Escherichia coli [TaxId: 562]

 Score =  101 bits (254), Expect = 4e-28
 Identities = 40/99 (40%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           L++RVG+I++  RHE AD LY+ +VDVG+ +     + LV Y   E L  ++VVVL NL+
Sbjct: 12  LEMRVGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYYSEEELMGKTVVVLCNLQ 70

Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
              MRG  S  MLL A         LL P +    G R+
Sbjct: 71  KAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRV 109

>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 107

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: C-terminal domain of methionyl-tRNA synthetase, MetRS-CD
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

 Score =  101 bits (252), Expect = 7e-28
 Identities = 48/99 (48%), Positives = 65/99 (65%), Gaps = 3/99 (3%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           LD+RVG+II+   H  AD LYV +VD+G+ E R + +GL KY   E L +R VVV+ANL+
Sbjct: 11  LDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLE 69

Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
           P+ +RG+ S GMLLAA D   E V LL P +    G ++
Sbjct: 70  PKKLRGIGSQGMLLAADD--GERVALLMPDKEVKLGAKV 106

>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Aquifex aeolicus [TaxId: 63363]} Length = 107

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: Structure-specific tRNA-binding protein TRBP111
species: Aquifex aeolicus [TaxId: 63363]

 Score = 98.5 bits (245), Expect = 7e-27
 Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 3/99 (3%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLK 164
           +D+RV +++ A R E ++ L    + +G+ E  ++     KY   E L  + +V++ANLK
Sbjct: 11  VDLRVAKVLSAERVEGSEKLLKLTLSLGDEERTVVAGI-AKYYTPEELVGKKIVIVANLK 69

Query: 165 PRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERI 203
           PR + G++S GM+LAASD   EN+ ++ P +    G ++
Sbjct: 70  PRKIFGIESQGMILAASD--GENLSVIVPDRDVKEGAKL 106

>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 274]} Length = 109

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: TRBP111 homolog CsaA
species: Thermus thermophilus [TaxId: 274]

 Score = 91.3 bits (226), Expect = 5e-24
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 2/101 (1%)

Query: 105 LDIRVGRIIKAWRHEEADSLYVEEV-DVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANL 163
           LD+RVGR+++A  HE+A     +   D+G    +   + + +    E L  R VV   NL
Sbjct: 10  LDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNL 69

Query: 164 KPRNMRGVKSHGMLLAASDAAHENVELLEPPQGSVPGERIW 204
             + + G  S  ++L   D     V LL P +    G +++
Sbjct: 70  GAKRVAGFLSEVLVLGVPD-EAGRVVLLAPDREVPLGGKVF 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1ntga_	171	C-terminal domain of metazoan tyrosyl-tRNA synthet	100.0
d1fl0a_	164	EMAP II {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1pxfa_	111	Structure-specific tRNA-binding protein TRBP111 {E	100.0
d1mkha_	107	C-terminal domain of methionyl-tRNA synthetase, Me	100.0
d1pyba_	107	Structure-specific tRNA-binding protein TRBP111 {A	100.0
d1gd7a_	109	TRBP111 homolog CsaA {Thermus thermophilus [TaxId:	99.97
d1jjcb3	113	Domain B2 of PheRS-beta, PheT {Thermus thermophilu	99.85

>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-45  Score=316.25  Aligned_cols=162  Identities=50%  Similarity=0.767  Sum_probs=149.8

Q ss_pred             CcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecceEEeeeec
Q 024343          103 NMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLAASD  182 (269)
Q Consensus       103 ~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~SeGMLLsase  182 (269)
                      +++|||||+|+++++||+|||||+++||+|+++.|||+||+.|+++.+++.|+++++++||||+||||+.|||||||+++
T Consensus         7 skldi~VG~I~~v~~hP~adkL~v~~Vd~G~~~~~~Iv~g~~~~~~~~~~~g~~v~~~~nlk~~kirGv~SeGMl~s~~e   86 (171)
T d1ntga_           7 SRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASI   86 (171)
T ss_dssp             GGSCEEEEEEEEEEECTTCSSCEEEEEECSSSSCEEEEESCTTTSCGGGTTTCEEEEECCBCCEEETTEEECCEECEEEE
T ss_pred             ccccEEEEEEEEEEECCCCCeeEEEEEEeCCCceEEEEeecccccccchhcccccceeeeccccccCccccceEEeeccc
Confidence            57999999999999999999999999999998899999999999999999999999999999999999999999999997


Q ss_pred             CC-CCcEEEEcCCCCCCCCceEEeCCCCCCcCCCCCCCCCCCccchhHhHhCCCcEECCCeEEEeCCeeeeecccceEec
Q 024343          183 AA-HENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLMQTSAGAVMSR  261 (269)
Q Consensus       183 ~~-~~~VelL~pp~~a~~G~rV~~~g~~~~~~~p~~~~p~~~~KkK~we~v~p~L~t~~~gva~y~~~~~~ts~G~~~~~  261 (269)
                      .+ .+.++++++|.++++|++|+|+|+++..  ++   +.+++|+|.|+.++++|.|++||+|+|++.+|+|++|+|+++
T Consensus        87 ~g~~~~~~~~~~p~~~~~G~~v~~~~~~~~~--~~---~~~~~k~k~~~~~~~~l~v~~d~~a~~k~~~~~t~~g~~~~~  161 (171)
T d1ntga_          87 EGINRQVEPLDPPAGSAPGEHVFVKGYEKGQ--PD---EELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCK  161 (171)
T ss_dssp             ESSSEEEEECBCCBTCCTTCEEEETTCSSCC--CC---SSBCGGGCHHHHHHTTEEECTTSBEEETTEEEEETTEECBCS
T ss_pred             CCCccceeeecCCCCCCCcCEEEECCccccC--cc---cccCcccchHHHhcccccCCCCCEEEECCeeeecCCCCEEec
Confidence            43 4567889999999999999999886532  22   246789999999999999999999999999999999999999


Q ss_pred             cCCCcccC
Q 024343          262 SLKNANIS  269 (269)
Q Consensus       262 sl~~~~Is  269 (269)
                      +++|++||
T Consensus       162 ~i~~~~iS  169 (171)
T d1ntga_         162 SLKGGNIS  169 (171)
T ss_dssp             SCTTCEEE
T ss_pred             cCCCCEEe
Confidence            99999997

>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: EMAP II
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-45  Score=312.08  Aligned_cols=161  Identities=48%  Similarity=0.774  Sum_probs=147.9

Q ss_pred             ccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecceEEee
Q 024343          100 DAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSHGMLLA  179 (269)
Q Consensus       100 df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~SeGMLLs  179 (269)
                      ||. ++|||||+|+++++||+|||||+|+||+|++++|||+||+.|+|++++|.|++|++++||||+||||+.|||||||
T Consensus         2 Df~-kldirVGkI~~~~~hP~adkL~v~~VD~G~~~~~~Iv~g~~~~~~~~~l~g~~v~~~~nlkp~kirGv~SeGMlls   80 (164)
T d1fl0a_           2 DVS-RLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMC   80 (164)
T ss_dssp             CGG-GSCEEEEEEEEEEEETTEEEEEEEEEECSSSSCEEEEECCTTTSCGGGGTTEEEEEECCSCCEESSSCEECCEECE
T ss_pred             Ccc-ceeEEEEEEEEEEECCCCCcceEEEEEccCCceEEEEeeccccccchhccCccccccccccccccCceEcceEEEe
Confidence            575 5999999999999999999999999999998899999999999999999999999999999999999999999999


Q ss_pred             eecCCCCcEEEEcCCCCCCCCceEEeCCCCCCcCCCCCCCCCCCccchhHhHhCCCcEECCCeEEEeCCeee-eecccce
Q 024343          180 ASDAAHENVELLEPPQGSVPGERIWFGSQEDKENQPAPASPNQVQKKKIWELVQPHLKTDASLVAMLGEHLM-QTSAGAV  258 (269)
Q Consensus       180 ase~~~~~VelL~pp~~a~~G~rV~~~g~~~~~~~p~~~~p~~~~KkK~we~v~p~L~t~~~gva~y~~~~~-~ts~G~~  258 (269)
                      +++.  +++.+++||+++++|++|+|++++..   ++   +..++|+|+||.++++|++|++|+++|+|.++ ++++|+|
T Consensus        81 a~~~--~~~~ll~~p~~~~~G~~v~~~~~~~~---~~---~~l~~k~~~~~~i~~~l~~n~~~~~~~~g~~~~~~~~g~~  152 (164)
T d1fl0a_          81 ASSP--EKIEILAPPNGSVPGDRITFDAFPGE---PD---KELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVC  152 (164)
T ss_dssp             EEET--TEEEECBCCTTCCTTCBCCCTTSCCC---CC---SSCCTTTCTHHHHGGGEEECTTSBEEETTEECEETTTEEC
T ss_pred             eeCC--CccEEEeCCCCCCCCCEEEecccCCC---Cc---hhcCcccchhHhhccCcEECCCCEEEECCEEeeeccCCCE
Confidence            9975  46889999999999999999987642   33   24568999999999999999999999999998 5689999


Q ss_pred             EeccCCCcccC
Q 024343          259 MSRSLKNANIS  269 (269)
Q Consensus       259 ~~~sl~~~~Is  269 (269)
                      ++++|+|+.|+
T Consensus       153 ~~~~l~~~~Ik  163 (164)
T d1fl0a_         153 RAQTMSNSGIK  163 (164)
T ss_dssp             BCSSCCSCEEC
T ss_pred             EcccCCCCeee
Confidence            99999999985

>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: Structure-specific tRNA-binding protein TRBP111
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.9e-35  Score=236.15  Aligned_cols=109  Identities=39%  Similarity=0.556  Sum_probs=101.0

Q ss_pred             CceeecccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceec
Q 024343           94 NSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKS  173 (269)
Q Consensus        94 ~~isi~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~S  173 (269)
                      ++|+|+||. ++|||||+|+++++||+|||||+++||+|+ +.|||+||+.++|++|+|+|++|++++||||+||||+.|
T Consensus         2 e~i~~~dF~-kldirVG~I~~~e~hp~adkL~~~~VD~G~-~~~~iv~g~~~~~~~e~lvGk~v~~v~Nlkp~kirGv~S   79 (111)
T d1pxfa_           2 ETVAYADFA-RLEMRVGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETS   79 (111)
T ss_dssp             CCSSHHHHH-HSCEEEEEEEEEECCTTCTTCCEEEEEETT-EEEEEECCCCTTSHHHHHTTCEEEEETTCSCCCBTTBCC
T ss_pred             CeechhHhc-eeeEEEEEEEEEEEcCCCCceEEEEEEeCC-cceeEEEEcccccChhHhcCceeeeecccccceECCeec
Confidence            579999997 599999999999999999999999999998 679999999999999999999999999999999999999


Q ss_pred             ceEEeeeecCCCCcEEEEcCCCCCCCCceEE
Q 024343          174 HGMLLAASDAAHENVELLEPPQGSVPGERIW  204 (269)
Q Consensus       174 eGMLLsase~~~~~VelL~pp~~a~~G~rV~  204 (269)
                      ||||||+.++++..+.++.|++++++|+||.
T Consensus        80 eGMil~~~~~d~~~~~ll~p~~~~~~G~rv~  110 (111)
T d1pxfa_          80 ECMLLCAETDDGSESVLLTPERMMPAGVRVV  110 (111)
T ss_dssp             CCCBCEEECTTSCCEEECCCSSCCCTTCBCC
T ss_pred             eEEEEEeEcCCCCcEEEEcCCCCCCCCCEec
Confidence            9999999886666677888888899999973

>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: C-terminal domain of methionyl-tRNA synthetase, MetRS-CD
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=100.00  E-value=9.7e-35  Score=231.62  Aligned_cols=105  Identities=49%  Similarity=0.745  Sum_probs=98.3

Q ss_pred             ceeecccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecc
Q 024343           95 SVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSH  174 (269)
Q Consensus        95 ~isi~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~Se  174 (269)
                      .|+|+||.+ +|||||+|+++++||+|||||+++||+|+ +.|||+||+.|+|++|+|.|++|++++||||++|||+.||
T Consensus         2 ~I~~ddF~k-ldirVG~I~~~~~hp~adkL~~~~Vd~G~-~~~~Iv~G~~~~~~~e~liG~~v~~v~nlk~~kirGv~Se   79 (107)
T d1mkha_           2 YVKFDDFAK-LDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQ   79 (107)
T ss_dssp             CCCHHHHHT-SCEEEEEEEEEEECTTCSSCEEEEEECSS-CEEEEEECCTTTCCHHHHTTCEEEEETTSCCEEC-CCEEC
T ss_pred             EEEhhHeee-eeEEEEEEEEEEecCCCCceEEEEEEcCC-eEEEEEEEeeeEEcCcccCCCEEEeecCCCcccCCCccCC
Confidence            489999975 99999999999999999999999999998 6899999999999999999999999999999999999999


Q ss_pred             eEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343          175 GMLLAASDAAHENVELLEPPQGSVPGERI  203 (269)
Q Consensus       175 GMLLsase~~~~~VelL~pp~~a~~G~rV  203 (269)
                      |||||++++  +++.+|.||+++++|++|
T Consensus        80 GMl~s~~e~--~~~~ll~~~~~~~~G~~i  106 (107)
T d1mkha_          80 GMLLAADDG--ERVALLMPDKEVKLGAKV  106 (107)
T ss_dssp             CCBCEEECS--SCEEECCCSSCCCTTCEE
T ss_pred             EEEEEeecC--CcEEEEECCCCCCCCCcc
Confidence            999999874  478899999999999997

>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: Structure-specific tRNA-binding protein TRBP111
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=6.7e-35  Score=232.70  Aligned_cols=105  Identities=34%  Similarity=0.626  Sum_probs=98.7

Q ss_pred             ceeecccCCcCCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecc
Q 024343           95 SVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSH  174 (269)
Q Consensus        95 ~isi~df~~~ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~Se  174 (269)
                      .|+|+||. ++|||||+|+++++||+|||||+++||+|+ +.|||+||+.++|++|+|+|++|++++||||+||||+.||
T Consensus         2 ~I~~~dF~-kldirVG~I~~~e~hp~adkL~~~~VD~G~-~~~~iv~g~~~~~~~e~liGk~v~~v~Nlkp~kirG~~Se   79 (107)
T d1pyba_           2 LIGIEDFL-KVDLRVAKVLSAERVEGSEKLLKLTLSLGD-EERTVVAGIAKYYTPEELVGKKIVIVANLKPRKIFGIESQ   79 (107)
T ss_dssp             CCCHHHHH-HSCEEEEEEEEEECCSSCSCCEEEEEEETT-EEEEEEECCTTTSCHHHHTTCEEEEETTSCSSCTTSCCBS
T ss_pred             EEeHHHcc-eeeEEEEEEEEEEeccccCceEEEEeecCC-cccceEEeeecccChhHhcCcEEEEEeccccceECCeeee
Confidence            48999997 499999999999999999999999999998 5799999999999999999999999999999999999999


Q ss_pred             eEEeeeecCCCCcEEEEcCCCCCCCCceE
Q 024343          175 GMLLAASDAAHENVELLEPPQGSVPGERI  203 (269)
Q Consensus       175 GMLLsase~~~~~VelL~pp~~a~~G~rV  203 (269)
                      |||||++++  +++.+|.|+.++++|++|
T Consensus        80 gMil~~~d~--~~~~ll~p~~~~~~G~~i  106 (107)
T d1pyba_          80 GMILAASDG--ENLSVIVPDRDVKEGAKL  106 (107)
T ss_dssp             SEECEEECS--SCEEEEEESSCCCTTEEC
T ss_pred             EEEEEEEcC--CceEEEeCCCCCCCCCcc
Confidence            999999864  478899999999999986

>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: TRBP111 homolog CsaA
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=2.1e-32  Score=217.52  Aligned_cols=107  Identities=28%  Similarity=0.383  Sum_probs=96.4

Q ss_pred             eeecccCCcCCeEEEEEEEEEeCCCCCceEEE-EEEcCCCCcEEEEeCCCCcccccccCCCEEEEEEeeccceecceecc
Q 024343           96 VNVKDAANMLDIRVGRIIKAWRHEEADSLYVE-EVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVLANLKPRNMRGVKSH  174 (269)
Q Consensus        96 isi~df~~~ldIrVGkIveve~HP~ADKLyv~-kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl~NLKprkirGv~Se  174 (269)
                      ++|+||. ++|||||+|+++++||++|||+++ .+|.|+.+.++|++|+.+||.+|+|+|+++++++||||+||||+.||
T Consensus         2 ~~~edF~-kldirVG~I~s~e~hp~adkll~~~v~~~g~~~~~~i~~~~~~~~~~e~lvG~~v~~~~Nlkp~kirGv~Se   80 (109)
T d1gd7a_           2 TPLEAFQ-ILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNLGAKRVAGFLSE   80 (109)
T ss_dssp             CHHHHHH-HSCEEEEEEEEEEECTTCSSCCEEEEEECGGGCEEEEEECCTTTCCHHHHTTCEEEEECSSCCEEETTEEEC
T ss_pred             CChhHhc-eeeEEEEEEEEEEEccCcccccEEEEEecCcccceEEeeccccccChhhhcCCccccccccCcceEccccCC
Confidence            5799996 599999999999999999995555 55566667899999999999999999999999999999999999999


Q ss_pred             eEEeeeecCCCCcEEEEcCCCCCCCCceEE
Q 024343          175 GMLLAASDAAHENVELLEPPQGSVPGERIW  204 (269)
Q Consensus       175 GMLLsase~~~~~VelL~pp~~a~~G~rV~  204 (269)
                      |||||+++++ +++.+|.||+++++|+|||
T Consensus        81 GMiL~~~~~~-~~~~ll~p~~~~~~G~ri~  109 (109)
T d1gd7a_          81 VLVLGVPDEA-GRVVLLAPDREVPLGGKVF  109 (109)
T ss_dssp             SEECEEECTT-SCEEEEEESSCCCTTCBCC
T ss_pred             EEEEEEEcCC-CcEEEEeCCCCCCCCCccC
Confidence            9999999754 5788999999999999985

>d1jjcb3 b.40.4.4 (B:39-151) Domain B2 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: Domain B2 of PheRS-beta, PheT
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=8.9e-22  Score=158.23  Aligned_cols=89  Identities=20%  Similarity=0.290  Sum_probs=77.0

Q ss_pred             CCeEEEEEEEEEeCCCCCceEEEEEEcCCCCcEEEEeCCCCcccccccCCCEEEEE----------Eeeccceecceecc
Q 024343          105 LDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRIICSGLVKYVPLEFLQDRSVVVL----------ANLKPRNMRGVKSH  174 (269)
Q Consensus       105 ldIrVGkIveve~HP~ADKLyv~kVDvGe~e~RtIvSGl~n~~~~EeL~GkkVvVl----------~NLKprkirGv~Se  174 (269)
                      -+|+||+|+++++||+ |||++|+||+|+  .+||+||+.|+.     .|.+|+|+          .+|++++|||+.|+
T Consensus         5 ~gvvvg~I~~~~~hP~-~kL~~~~Vd~g~--~~~IV~ga~Nv~-----~g~~v~vA~~Ga~lp~~g~~I~~~kirGv~S~   76 (113)
T d1jjcb3           5 RGVVFARVLEAHPIPG-TRLKRLVLDAGR--TVEVVSGAENAR-----KGIGVALALPGTELPGLGQKVGERVIQGVRSF   76 (113)
T ss_dssp             TTEEEEEEEEEEECTT-SSCEEEEEESSS--EEEEEECCTTCC-----TTCEEEEECTTCCCTTCSSCCCEEEETTEEEE
T ss_pred             CCEEEEEEEEeEeCCC-CcEEEEEECCCC--EEEEEeCCchhh-----cCcEEEEEecccccCcccceeccceecCEeee
Confidence            3699999999999996 899999999984  689999999998     89999997          26999999999999


Q ss_pred             eEEeeeec----CCCCcEEEEcCCCC-CCCCceE
Q 024343          175 GMLLAASD----AAHENVELLEPPQG-SVPGERI  203 (269)
Q Consensus       175 GMLLsase----~~~~~VelL~pp~~-a~~G~rV  203 (269)
                      ||||+++|    ++++++.+|  |++ .++|+++
T Consensus        77 GMlcS~~ELGl~~~~~GI~~L--~~d~~~~G~~~  108 (113)
T d1jjcb3          77 GMALSPRELGVGEYGGGLLEF--PEDALPPGTPL  108 (113)
T ss_dssp             SEECCHHHHTSCSCCSSCCCB--CTTSSCTTCBG
T ss_pred             eEEecHHHcCCCCCCCcEEEe--CCCCCCCCCch
Confidence            99999985    566786444  666 5899986