Citrus Sinensis ID: 024346

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MDESYNNLPSSHLLGSVPAVVSEEKHATSYEAPEATMQTFPPGNGGGSRPGYQSLGSSSEGFEQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKSYMEGNDLTVLVVASFCLQMALAIFIKVWFFP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccHHHHHHHHHHcccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcEcccccHHHHHHHHHHHccccccccHHEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mdesynnlpsshllgsvpavvseekhatsyeapeatmqtfppgngggsrpgyqslgsssegfeqqpannwkgffsissytqyfnvdtdIVINRLfsslhplsgdffskidanpdlygLIWISTTLVFMLASFGNCATYLMQKytnssaswsfDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNlksymegndLTVLVVASFCLQMALAIFIKVWFFP
Flexible Loop (DISEMBL)
mdesynnlpsshllgSVPAVVSEEKHATSYEAPEATMQTFPPGNGGGSRPGYQSLGSSSEGFEQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKSYMEGNDLTVLVVASFCLQMALAIFIKVWFFP
Low Complexity Region (SEG)
MDESYNNLPSSHLLGSVPAVVSEEKHATSYEAPEATMQTFPPGNGGGSRPGYQSLGSSSEGFEQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKSYMEGNDLTVLVVASFCLQMALAIFIKVWFFP
Disordered region (IsUnstruct)
********************************************************************NWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKSYMEGNDLTVLVVASFCLQMALAIFIKVWFF*
Disordered Region (DISOPRED)
******N******************************************************************FSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKSYMEGNDLTVLVVASFCLQMALAIFIKVWFFP
Disordered Region (DISEMBL)
**********SHLLGSVPAVVSEEKHATSYEAPEATMQTFPPGNGGGSRPGYQ**********QQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKSYMEGNDLTVLVVASFCLQMALAIFIKVWFFP
Disordered Region (DISPRO)
*********************************************************************WKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKSYMEGNDLTVLVVASFCLQMALAIFIKVWFFP
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDESYNNLPSSHLLGSVPAVVSEEKHATSYEAPEATMQTFPPGNGGGSRPGYQSLGSSSEGFEQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKSYMEGNDLTVLVVASFCLQMALAIFIKVWFFP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q54TS4	347	Protein YIPF1 homolog OS=	yes	no	0.762	0.590	0.344	6e-29
Q5RBL0	306	Protein YIPF1 OS=Pongo ab	yes	no	0.832	0.732	0.323	3e-23
Q9Y548	306	Protein YIPF1 OS=Homo sap	yes	no	0.881	0.774	0.317	8e-23
Q91VU1	306	Protein YIPF1 OS=Mus musc	yes	no	0.851	0.748	0.315	2e-22
Q6P6G5	306	Protein YIPF1 OS=Rattus n	yes	no	0.851	0.748	0.315	6e-22
Q99LP8	312	Protein YIPF2 OS=Mus musc	no	no	0.873	0.753	0.307	2e-21
Q9BWQ6	316	Protein YIPF2 OS=Homo sap	no	no	0.609	0.518	0.358	2e-19
Q5XIT3	311	Protein YIPF2 OS=Rattus n	no	no	0.747	0.646	0.319	2e-19
Q9UTD3	249	Protein YIP5 OS=Schizosac	yes	no	0.602	0.650	0.261	3e-09

>sp|Q54TS4|YIPF1_DICDI Protein YIPF1 homolog OS=Dictyostelium discoideum GN=yipf1 PE=3 SV=1

 Score =  127 bits (320), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 120/218 (55%), Gaps = 13/218 (5%)

Query: 55  LGSSSEGFEQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPD 114
           L ++ +G E++       F+ +  Y   FNVDT  V  RL  S+ P+   FF+ I  NPD
Sbjct: 112 LNTNEDGTEKK-----YSFYEVPYYRFLFNVDTKEVGLRLIRSMLPIKFSFFNLIRENPD 166

Query: 115 LYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLA 174
           LYG  W+ T+LVF++A   N   Y    +++   SW  D+  +  +A T+YGY+ V+PL 
Sbjct: 167 LYGPFWVLTSLVFIVAVTSNLNEYF---HSSDHKSWEVDIQKIVYSAITIYGYSFVIPLI 223

Query: 175 YYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAF 234
            + + ++M     L+   C++GY+LFIFV  S L +IP++L++WII+ +A   S  F+  
Sbjct: 224 LWGIFKWMNLGLRLLDMLCIYGYTLFIFVPASILCVIPLQLVQWIIVAIASIVSGLFLVT 283

Query: 235 N----LKSYMEGNDLTVLVVASFCLQMALAIFIKVWFF 268
           N    LK       L +  V    L + LA+ +K++FF
Sbjct: 284 NIFTPLKEDFTKRGLIICAVIG-ALHIGLALVLKLYFF 320

Dictyostelium discoideum (taxid: 44689)

>sp|Q5RBL0|YIPF1_PONAB Protein YIPF1 OS=Pongo abelii GN=YIPF1 PE=2 SV=1

 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 121/238 (50%), Gaps = 14/238 (5%)

Query: 44  NGGGSRPGYQSLGSSSEGFEQQPANNWKG--FFSISSYTQYFNVDTDIVINRLFSSLHPL 101
            G G     + LG+      +  A   K   F++   Y  +F+VDT  V +R+  SL P+
Sbjct: 45  RGSGREEDDELLGNDDSDKTELLAGQKKSSPFWTFEYYQTFFDVDTYQVFDRIKGSLLPI 104

Query: 102 SGDFFSK--IDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNV 159
            G  F +  I +NPDLYG  WI  TLVF +A  GN + +L+      +  +  +   V++
Sbjct: 105 PGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNLSNFLIH-LGEKTYRYVPEFRKVSI 163

Query: 160 AACTVYGYAIVVPLAYYFLLQYMGS------SASLVRFWCLWGYSLFIFVVTSFLLLIPI 213
           AA T+Y YA +VPLA +  L +  S      S S +   C++GYSLFI++ T+ L +IP 
Sbjct: 164 AATTIYAYAWLVPLALWGFLMWRNSKVMNIVSYSFLEIVCVYGYSLFIYIPTAILWIIPQ 223

Query: 214 ELLRWIIILLAGTTSSCFVAFNL-KSYMEGNDLTVL--VVASFCLQMALAIFIKVWFF 268
           + +RWI++++A   S   +A     +  E N    L  +V    L M L++    +FF
Sbjct: 224 KAVRWILVMIALGISGSVLAMTFWPAVREDNRRVALATIVTIVLLHMLLSVGCLAYFF 281

Pongo abelii (taxid: 9601)

>sp|Q9Y548|YIPF1_HUMAN Protein YIPF1 OS=Homo sapiens GN=YIPF1 PE=2 SV=1

 Score =  107 bits (268), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 125/252 (49%), Gaps = 15/252 (5%)

Query: 31  EAPEATMQTFPPG-NGGGSRPGYQSLGSSSEGFEQQPANNWKG--FFSISSYTQYFNVDT 87
           E P  T +  P    G G     + LG+      +  A   K   F++   Y  +F+VDT
Sbjct: 31  EDPGETPKHQPGSPRGSGREEDDELLGNDDSDKTELLAGQKKSSPFWTFEYYQTFFDVDT 90

Query: 88  DIVINRLFSSLHPLSGDFFSK--IDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTN 145
             V +R+  SL P+ G  F +  I +NPDLYG  WI  TLVF +A  GN + +L+     
Sbjct: 91  YQVFDRIKGSLLPIPGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNLSNFLIH-LGE 149

Query: 146 SSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGS------SASLVRFWCLWGYSL 199
            +  +  +   V++AA  +Y YA +VPLA +  L +  S      S S +   C++GYSL
Sbjct: 150 KTYHYVPEFRKVSIAATIIYAYAWLVPLALWGFLMWRNSKVMNIVSYSFLEIVCVYGYSL 209

Query: 200 FIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNL-KSYMEGNDLTVL--VVASFCLQ 256
           FI++ T+ L +IP + +RWI++++A   S   +A     +  E N    L  +V    L 
Sbjct: 210 FIYIPTAILWIIPQKAVRWILVMIALGISGSLLAMTFWPAVREDNRRVALATIVTIVLLH 269

Query: 257 MALAIFIKVWFF 268
           M L++    +FF
Sbjct: 270 MLLSVGCLAYFF 281

Homo sapiens (taxid: 9606)

>sp|Q91VU1|YIPF1_MOUSE Protein YIPF1 OS=Mus musculus GN=Yipf1 PE=2 SV=1

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 126/244 (51%), Gaps = 15/244 (6%)

Query: 38  QTFPPGNGGGSRPGYQSLGSSSEGFEQQPANNWKG--FFSISSYTQYFNVDTDIVINRLF 95
           Q  PPG+ G      + LG++     +  A   +   F++   Y  +F+VDT  V +R+ 
Sbjct: 40  QPRPPGSVGREE-DEELLGNNDSDETELLAGQKRSSPFWTFEYYQTFFDVDTYQVFDRIK 98

Query: 96  SSLHPLSGDFFSK--IDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFD 153
            SL P+ G  F +  I +NPDLYG  WI  TLVF +A  GN + +L+      +  +  +
Sbjct: 99  GSLLPVPGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNLSNFLIH-LGEKTYHYVPE 157

Query: 154 VSFVNVAACTVYGYAIVVPLAYYFLLQYMGS------SASLVRFWCLWGYSLFIFVVTSF 207
              V++AA  +Y YA +VPLA +  L +  S      S S +   C++GYSLFI++ T+ 
Sbjct: 158 FQKVSIAATVIYAYAWLVPLALWGFLLWRNSKVMSMVSYSFLEIVCVYGYSLFIYIPTAV 217

Query: 208 LLLIPIELLRWIIILLA-GTTSSCFVAFNLKSYMEGNDLTVL--VVASFCLQMALAIFIK 264
           L +IP  ++RW+++++A G + S  V     +  E N    L  +V    L + L++   
Sbjct: 218 LWIIPQRVVRWVLVMIALGVSGSVLVMTFWPAVREDNRRVALATIVTIVLLHVLLSVGCL 277

Query: 265 VWFF 268
            +FF
Sbjct: 278 AYFF 281

Mus musculus (taxid: 10090)

>sp|Q6P6G5|YIPF1_RAT Protein YIPF1 OS=Rattus norvegicus GN=Yipf1 PE=2 SV=1

 Score =  104 bits (260), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 124/244 (50%), Gaps = 15/244 (6%)

Query: 38  QTFPPGNGGGSRPGYQSLGSSSEGFEQQPANNWKG--FFSISSYTQYFNVDTDIVINRLF 95
           Q  PPG+ G      + LG++     +  A   K   F++   Y  +F+VDT  V +R+ 
Sbjct: 40  QPRPPGSLGREE-DEELLGTNDSDETELLAGQKKSSPFWTFEYYQTFFDVDTYQVFDRIK 98

Query: 96  SSLHPLSGDFFSK--IDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFD 153
            SL P+ G  F +  I +NPDLYG  WI  TLVF +A  GN + +L+      +  +  +
Sbjct: 99  GSLLPVPGKNFVRLYIRSNPDLYGPFWICATLVFAIAISGNLSNFLIH-LGEKTYHYVPE 157

Query: 154 VSFVNVAACTVYGYAIVVPLAYYFLLQYMGS------SASLVRFWCLWGYSLFIFVVTSF 207
              V++AA  +Y YA +VPLA +  L +  S      S S +   C++GYSLFI++ T+ 
Sbjct: 158 FQKVSIAATVIYAYAWLVPLALWGFLLWRNSKVMNIVSYSFLEIVCVYGYSLFIYIPTAV 217

Query: 208 LLLIPIELLRWIIILLAGTTSSCFVAFNL-KSYMEGNDLTVL--VVASFCLQMALAIFIK 264
           L +IP  ++RW+++ +A   S   +A     +  E N    L  +V    L + L++   
Sbjct: 218 LWIIPQRVIRWVLVTIALGISGSVLAMTFWPAVREDNRRVALATIVTIMLLHVLLSVGCL 277

Query: 265 VWFF 268
            +FF
Sbjct: 278 AYFF 281

Rattus norvegicus (taxid: 10116)

>sp|Q99LP8|YIPF2_MOUSE Protein YIPF2 OS=Mus musculus GN=Yipf2 PE=2 SV=1

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 125/254 (49%), Gaps = 19/254 (7%)

Query: 10  SSHLLGSVP--AVVSEEKHATSYEAPEATMQTFPPGNGGGSRPGYQSLGSSSEGFEQQPA 67
           +++LL   P  A  S+    TS E     + +   G G G+  G +    +S   E++P 
Sbjct: 15  ATNLLAETPDAATTSQSDELTSREHVAVVVGS---GIGYGAEVGEEEDDKTSLLQEEKPQ 71

Query: 68  NNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSK--IDANPDLYGLIWISTTL 125
                F++   Y  +F+VDT  V++R+  SL P  G  F +  +   PDLYG  WI  TL
Sbjct: 72  PR---FWTFDYYQSFFDVDTSQVLDRIKGSLLPHPGHNFVRHHLRNRPDLYGPFWICATL 128

Query: 126 VFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGSS 185
            F+LA  GN    L Q+  + S  +S     V +A  T+Y YA +VPLA +  L++   +
Sbjct: 129 AFVLAVTGNLTLVLAQR-RDPSIHYSPQFHKVTIAGITIYCYAWLVPLALWGFLRWRQGT 187

Query: 186 ASLVRFW------CLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKSY 239
              +  +      C++GYSLF+F+ T  L LIP++ ++W+   L    S+  + F L   
Sbjct: 188 RERMGLYTFLETVCVYGYSLFVFIPTVVLWLIPVQWIQWLFGALGLALSAAGLVFTLWPV 247

Query: 240 MEGNDLTVLVVASF 253
           +  +  T LV A+ 
Sbjct: 248 VRED--TRLVAAAL 259

Mus musculus (taxid: 10090)

>sp|Q9BWQ6|YIPF2_HUMAN Protein YIPF2 OS=Homo sapiens GN=YIPF2 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 92/173 (53%), Gaps = 9/173 (5%)

Query: 72  GFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSK--IDANPDLYGLIWISTTLVFML 129
           GF++ S Y  +F+VDT  V++R+  SL P  G  F +  +   PDLYG  WI  TL F+L
Sbjct: 76  GFWTFSYYQSFFDVDTSQVLDRIKGSLLPRPGHNFVRHHLRNRPDLYGPFWICATLAFVL 135

Query: 130 ASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGSSA--- 186
           A  GN    L Q+  + S  +S     V VA  ++Y YA +VPLA +  L++        
Sbjct: 136 AVTGNLTLVLAQR-RDPSIHYSPQFHKVTVAGISIYCYAWLVPLALWGFLRWRKGVQERM 194

Query: 187 ---SLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNL 236
              + +   C++GYSLF+F+    L LIP+  L+W+   LA   S+  + F L
Sbjct: 195 GPYTFLETVCIYGYSLFVFIPMVVLWLIPVPWLQWLFGALALGLSAAGLVFTL 247

Homo sapiens (taxid: 9606)

>sp|Q5XIT3|YIPF2_RAT Protein YIPF2 OS=Rattus norvegicus GN=Yipf2 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 111/219 (50%), Gaps = 18/219 (8%)

Query: 10  SSHLLGSVP--AVVSEEKHATSYEAPEATMQTFPPGNGGGSRPGYQSLGSSSEGFEQQPA 67
           +++LL   P  A  S+    TS E     + +   G G G+  G +    +S   +++P 
Sbjct: 15  AANLLAETPDAATTSQSDKLTSQEHVAVVVGS---GIGYGAE-GEEEDDKTSLLQDEKPQ 70

Query: 68  NNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSK--IDANPDLYGLIWISTTL 125
                F++   Y  +F+VDT  V++R+  SL P  G  F +  +   PDLYG  WI  TL
Sbjct: 71  PR---FWTFDYYQSFFDVDTSQVLDRIKGSLLPHPGHNFVRHHLRNRPDLYGPFWICATL 127

Query: 126 VFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGSS 185
            F+LA  GN    L Q+  + S  +S     V +A  T+Y YA +VPLA +  L++   +
Sbjct: 128 AFVLAVTGNLTLVLAQR-RDPSIHYSPQFHKVTIAGITIYCYAWLVPLALWGFLRWRQGT 186

Query: 186 ASLVRFW------CLWGYSLFIFVVTSFLLLIPIELLRW 218
              +  +      C++GYSLF+F+ T  L LIP++ L+W
Sbjct: 187 RERMGLYTFLETVCVYGYSLFVFIPTVVLWLIPVQWLQW 225

Rattus norvegicus (taxid: 10116)

>sp|Q9UTD3|YIP5_SCHPO Protein YIP5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=yip5 PE=3 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 18/180 (10%)

Query: 28  TSYEAPEATMQTFPPGNGGGSRPGYQSLGSSSEGFEQQPANNWKGFFSISSYTQYFNVDT 87
           T++EA +   Q  P      ++P    L S     ++ P   W       +    FNV+T
Sbjct: 16  TTFEAEDLYKQRTPI-----TKPPAPRLQSRRASMQETP---W-------TIKDSFNVET 60

Query: 88  DIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSS 147
             V+ R   +L P + +FF  +D  PDLYG  WI+TT++  L  F N  T    +Y    
Sbjct: 61  KDVVQRCIHTLIP-TVNFFDVVDDRPDLYGPFWITTTVIQALF-FSNSITE-YARYATGH 117

Query: 148 ASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSF 207
            +  + +  +  AA  +YGY  ++ +  + +L +   +  L+   CL+GY+  +++  S 
Sbjct: 118 GTSGYSIKKLISAASIIYGYTTIIAVLLWGILVWNKCNPKLLDCLCLYGYANIVWLPVSL 177

Possible role in vesicle-mediated transport. May be involved in proper membrane localization of Rab GTPases.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
356501093	270	PREDICTED: protein YIPF1 homolog [Glycin	0.996	0.992	0.720	1e-115
359807651	270	uncharacterized protein LOC100813483 [Gl	0.996	0.992	0.720	1e-114
255566494	271	Protein YIPF1, putative [Ricinus communi	0.996	0.988	0.725	1e-113
359486763	270	PREDICTED: protein YIPF1 homolog [Vitis	1.0	0.996	0.7	1e-112
296086170	269	unnamed protein product [Vitis vinifera]	1.0	1.0	0.695	1e-112
449441358	270	PREDICTED: protein YIPF1 homolog [Cucumi	0.996	0.992	0.704	1e-112
449495287	270	PREDICTED: LOW QUALITY PROTEIN: protein	0.996	0.992	0.704	1e-112
224109456	271	predicted protein [Populus trichocarpa]	0.992	0.985	0.712	1e-107
388505556	275	unknown [Lotus japonicus]	0.992	0.970	0.669	1e-105
357492413	273	YIPF1-like protein [Medicago truncatula]	0.996	0.981	0.658	1e-105

>gi|356501093|ref|XP_003519363.1| PREDICTED: protein YIPF1 homolog [Glycine max]

 Score =  419 bits (1076), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 193/268 (72%), Positives = 235/268 (87%)

Query: 2   DESYNNLPSSHLLGSVPAVVSEEKHATSYEAPEATMQTFPPGNGGGSRPGYQSLGSSSEG 61
           + SY  LP+SHLLGSVPAV++EE +AT + A  A MQTFPP NGG   PG+Q+LGS +E 
Sbjct: 3   ESSYTGLPTSHLLGSVPAVITEENNATKHVATGANMQTFPPNNGGDRGPGHQTLGSPTEA 62

Query: 62  FEQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWI 121
           FEQQPANNW+G FS+SSY++YFNVDTD+V+ RL SSL+P++ DFFSKIDANPDLYGLIWI
Sbjct: 63  FEQQPANNWRGIFSMSSYSEYFNVDTDVVLIRLISSLNPVAADFFSKIDANPDLYGLIWI 122

Query: 122 STTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQY 181
           STTLVF+LAS GN AT+LMQK+ ++S SWSFDVS+VNVAAC++YGYAIVVPLAYYF LQY
Sbjct: 123 STTLVFVLASLGNLATFLMQKHADNSTSWSFDVSYVNVAACSIYGYAIVVPLAYYFFLQY 182

Query: 182 MGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKSYME 241
           MGS+ASL+RFWCLWGYSL IF+++SFLL+IP+E LRW+IILL G  S+ FVA NL+SY+E
Sbjct: 183 MGSNASLIRFWCLWGYSLTIFIMSSFLLIIPVEFLRWVIILLTGVASASFVALNLRSYIE 242

Query: 242 GNDLTVLVVASFCLQMALAIFIKVWFFP 269
           GN+L+V ++A+F LQMALAIFIKVWFFP
Sbjct: 243 GNELSVAIIAAFFLQMALAIFIKVWFFP 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807651|ref|NP_001241169.1| uncharacterized protein LOC100813483 [Glycine max] gi|255641790|gb|ACU21164.1| unknown [Glycine max]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/268 (72%), Positives = 234/268 (87%)

Query: 2   DESYNNLPSSHLLGSVPAVVSEEKHATSYEAPEATMQTFPPGNGGGSRPGYQSLGSSSEG 61
           + SY  LP+SHLLGSVPAVV+EE +A+ + A  A MQ FPP NGG   PGY +LGS +E 
Sbjct: 3   ESSYTGLPTSHLLGSVPAVVTEENNASKHVATSANMQIFPPNNGGDRGPGYNTLGSPTEA 62

Query: 62  FEQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWI 121
           FEQQPANNW+G FSISSY++YFNVDTD+V+ RL SSL+P++GDFFSKIDANPDLYGLIWI
Sbjct: 63  FEQQPANNWRGVFSISSYSEYFNVDTDVVLIRLISSLNPVAGDFFSKIDANPDLYGLIWI 122

Query: 122 STTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQY 181
           STTLVF+LAS GN AT+LMQK+ ++S SWSFDVS+VNVAAC++YGYAIVVPLAYYF LQY
Sbjct: 123 STTLVFVLASLGNLATFLMQKHVDNSTSWSFDVSYVNVAACSIYGYAIVVPLAYYFFLQY 182

Query: 182 MGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKSYME 241
           MGS+ASL+RFWC+WGYSL IF+++SFLL+IP+E LRW+IILL G  S+ FVA NL+SY+E
Sbjct: 183 MGSNASLIRFWCMWGYSLTIFIMSSFLLIIPVEFLRWVIILLTGVASASFVALNLRSYIE 242

Query: 242 GNDLTVLVVASFCLQMALAIFIKVWFFP 269
           GN+L+V ++A+F LQMALAIFIKVWFFP
Sbjct: 243 GNELSVAIIAAFFLQMALAIFIKVWFFP 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566494|ref|XP_002524232.1| Protein YIPF1, putative [Ricinus communis] gi|223536509|gb|EEF38156.1| Protein YIPF1, putative [Ricinus communis]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/270 (72%), Positives = 232/270 (85%), Gaps = 2/270 (0%)

Query: 1   MDESYNNLPSSHLLGSVPAVVSEEKHATS-YEAPEATMQTFPPG-NGGGSRPGYQSLGSS 58
           M+ESY+NLP+SHLLGSVPAVVSEEK  T+ YE PEA MQTFPP  NGGG+  GYQ+LG+ 
Sbjct: 1   MEESYSNLPTSHLLGSVPAVVSEEKSTTTTYEVPEANMQTFPPNSNGGGTTRGYQTLGTP 60

Query: 59  SEGFEQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGL 118
            EGFEQQ  NNWKG FSISSYTQYFNVDTDIVINR+ SS +P+ GDFF KIDA+PDLYGL
Sbjct: 61  PEGFEQQAPNNWKGVFSISSYTQYFNVDTDIVINRIMSSFYPIGGDFFRKIDAHPDLYGL 120

Query: 119 IWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFL 178
           IWISTTL+ +LA  GNCATYLMQK+T SSASW+FDV +VNVA   +YGYAI+VPLA+YFL
Sbjct: 121 IWISTTLICLLAGLGNCATYLMQKHTESSASWNFDVGYVNVATFAIYGYAILVPLAFYFL 180

Query: 179 LQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKS 238
            QY+G++ASL+RFWC+WGYSL IFV++SFLL++P+E  RWIIIL AG  S+CFVA NLK 
Sbjct: 181 FQYLGANASLIRFWCMWGYSLVIFVISSFLLVVPVEAFRWIIILAAGIDSACFVATNLKF 240

Query: 239 YMEGNDLTVLVVASFCLQMALAIFIKVWFF 268
            + GNDLT++VV++FCLQ+ALAIFIK WFF
Sbjct: 241 CIGGNDLTIVVVSAFCLQLALAIFIKAWFF 270

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486763|ref|XP_002282343.2| PREDICTED: protein YIPF1 homolog [Vitis vinifera]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/270 (70%), Positives = 235/270 (87%), Gaps = 1/270 (0%)

Query: 1   MDESYNNLPSSHLLGSVPAVVSEEKHATSYEAPEATMQTFPPGNGGGSRPGYQSLGSSSE 60
           MDESYNNLP+SHLLGSVPAVV+EEK   +YE PEA +Q FPP NG     GYQ+ GS +E
Sbjct: 1   MDESYNNLPTSHLLGSVPAVVNEEKSIATYEVPEANLQIFPPNNGARGGQGYQTPGSPAE 60

Query: 61  G-FEQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLI 119
           G   QQ A+NWKG FSISSYTQYFNVDTD+V+NRL SSLHP+ GDFFSKIDANPDLYGLI
Sbjct: 61  GDGPQQSASNWKGVFSISSYTQYFNVDTDVVLNRLISSLHPIGGDFFSKIDANPDLYGLI 120

Query: 120 WISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLL 179
           W STTL+F++A+ GNCATYL +K ++SS +WSFDV ++N+AAC++YGYA+VVP+A+YFLL
Sbjct: 121 WTSTTLIFVIAALGNCATYLTKKQSSSSTTWSFDVGYLNLAACSIYGYALVVPVAFYFLL 180

Query: 180 QYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKSY 239
           QY+GS+ASLVRFWCLWGYSLFIF+++S LL+IP+E LRW+II+LAG  S+CFVA NL++Y
Sbjct: 181 QYLGSNASLVRFWCLWGYSLFIFILSSVLLIIPVEFLRWLIIVLAGGASACFVALNLRTY 240

Query: 240 MEGNDLTVLVVASFCLQMALAIFIKVWFFP 269
           ++GND+T+++VASF LQM LA+FIK+ FFP
Sbjct: 241 IQGNDITLVIVASFVLQMGLALFIKICFFP 270

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086170|emb|CBI31611.3| unnamed protein product [Vitis vinifera]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/269 (69%), Positives = 233/269 (86%)

Query: 1   MDESYNNLPSSHLLGSVPAVVSEEKHATSYEAPEATMQTFPPGNGGGSRPGYQSLGSSSE 60
           MDESYNNLP+SHLLGSVPAVV+EEK   +YE PEA +Q FPP NG     GYQ+ GS + 
Sbjct: 1   MDESYNNLPTSHLLGSVPAVVNEEKSIATYEVPEANLQIFPPNNGARGGQGYQTPGSPAG 60

Query: 61  GFEQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIW 120
              QQ A+NWKG FSISSYTQYFNVDTD+V+NRL SSLHP+ GDFFSKIDANPDLYGLIW
Sbjct: 61  DGPQQSASNWKGVFSISSYTQYFNVDTDVVLNRLISSLHPIGGDFFSKIDANPDLYGLIW 120

Query: 121 ISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQ 180
            STTL+F++A+ GNCATYL +K ++SS +WSFDV ++N+AAC++YGYA+VVP+A+YFLLQ
Sbjct: 121 TSTTLIFVIAALGNCATYLTKKQSSSSTTWSFDVGYLNLAACSIYGYALVVPVAFYFLLQ 180

Query: 181 YMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKSYM 240
           Y+GS+ASLVRFWCLWGYSLFIF+++S LL+IP+E LRW+II+LAG  S+CFVA NL++Y+
Sbjct: 181 YLGSNASLVRFWCLWGYSLFIFILSSVLLIIPVEFLRWLIIVLAGGASACFVALNLRTYI 240

Query: 241 EGNDLTVLVVASFCLQMALAIFIKVWFFP 269
           +GND+T+++VASF LQM LA+FIK+ FFP
Sbjct: 241 QGNDITLVIVASFVLQMGLALFIKICFFP 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441358|ref|XP_004138449.1| PREDICTED: protein YIPF1 homolog [Cucumis sativus]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/271 (70%), Positives = 236/271 (87%), Gaps = 3/271 (1%)

Query: 1   MDESYNNLPSSHLLGSVPAVVSEE--KHATSYEAPEATMQTFPPGNGGGSRPGYQSLGSS 58
           MDE+Y NLP+SHLLGSVPAV++EE  K  T +E PEA MQTFPP NGG    GYQ+L S 
Sbjct: 1   MDETYTNLPTSHLLGSVPAVINEEIEKSGTEHETPEAIMQTFPPTNGGDRGRGYQTLESP 60

Query: 59  SEGFEQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGL 118
           S+   QQP+N+WKG FS+SSY+QYFNVDTDIV+NRL SSL+P+ GDF SKIDANPDLYGL
Sbjct: 61  SDS-HQQPSNDWKGVFSVSSYSQYFNVDTDIVMNRLISSLYPIGGDFSSKIDANPDLYGL 119

Query: 119 IWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFL 178
           +WI+TTLVF+LA+ GNCATYLMQK ++  A+WSFDVS++NVAA +VYGYAIVVP+A+YF 
Sbjct: 120 VWITTTLVFVLAALGNCATYLMQKRSDQGAAWSFDVSYMNVAAGSVYGYAIVVPMAFYFS 179

Query: 179 LQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKS 238
           LQY+GS++SL+RFWCLWGYSLFIF++ SFLLLIP+E+LRW IILL+G  S+ FV+ NL++
Sbjct: 180 LQYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILRWFIILLSGAASASFVSLNLRA 239

Query: 239 YMEGNDLTVLVVASFCLQMALAIFIKVWFFP 269
           Y++GNDL+VL++A+F LQMALAIFIKVWFFP
Sbjct: 240 YIDGNDLSVLIIAAFFLQMALAIFIKVWFFP 270

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495287|ref|XP_004159789.1| PREDICTED: LOW QUALITY PROTEIN: protein YIPF1 homolog [Cucumis sativus]

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/271 (70%), Positives = 235/271 (86%), Gaps = 3/271 (1%)

Query: 1   MDESYNNLPSSHLLGSVPAVVSEE--KHATSYEAPEATMQTFPPGNGGGSRPGYQSLGSS 58
           MDE+Y NLP+SHLLGSVPAV++EE  K  T +E PEA MQTFPP NGG    GYQ+L S 
Sbjct: 1   MDETYTNLPTSHLLGSVPAVINEEIEKSGTEHETPEAIMQTFPPTNGGDRGRGYQTLESP 60

Query: 59  SEGFEQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGL 118
           S+   QQP+N+WKG FS+SSY+QYFNVDTDIV+NRL SSL+P+ GDF SKIDANPDLYGL
Sbjct: 61  SDS-HQQPSNDWKGVFSVSSYSQYFNVDTDIVMNRLISSLYPIGGDFSSKIDANPDLYGL 119

Query: 119 IWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFL 178
           +WI+TTLVF+LA+ GNCATYLMQK ++  A+WSFDVS++NVAA +VYGYAIVVP+A+YF 
Sbjct: 120 VWITTTLVFVLAALGNCATYLMQKRSDQGAAWSFDVSYMNVAAGSVYGYAIVVPMAFYFS 179

Query: 179 LQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKS 238
           LQY+GS++SL+RFWCLWGYSLFIF++ SFLLLIP+E+LRW IILL+G  S+ FV  NL++
Sbjct: 180 LQYLGSNSSLIRFWCLWGYSLFIFILASFLLLIPVEILRWFIILLSGAASASFVXLNLRA 239

Query: 239 YMEGNDLTVLVVASFCLQMALAIFIKVWFFP 269
           Y++GNDL+VL++A+F LQMALAIFIKVWFFP
Sbjct: 240 YIDGNDLSVLIIAAFFLQMALAIFIKVWFFP 270

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109456|ref|XP_002315201.1| predicted protein [Populus trichocarpa] gi|118485151|gb|ABK94438.1| unknown [Populus trichocarpa] gi|222864241|gb|EEF01372.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/271 (71%), Positives = 228/271 (84%), Gaps = 4/271 (1%)

Query: 1   MDESYNNLPSSHLLGSVPAVVSEEK--HATSYEAPEATMQTFPPG-NGGGSRPGYQSLGS 57
           MDESY+NLPSSHLLGSVPAVV+EEK  +  +YE PEA MQTFP   NGGG R GYQ+LGS
Sbjct: 1   MDESYDNLPSSHLLGSVPAVVTEEKAKNVVNYEVPEANMQTFPTNINGGGGR-GYQTLGS 59

Query: 58  SSEGFEQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYG 117
             E FEQQP NNWKG FS+SSYTQYFNVDTD VINRL SS +P  GDFFS+IDANPDLYG
Sbjct: 60  LPEEFEQQPPNNWKGIFSVSSYTQYFNVDTDTVINRLMSSFYPFGGDFFSRIDANPDLYG 119

Query: 118 LIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYF 177
            +W+STTL+F+LAS GN ATYL+QK+T+  ASWSF+V +VNVA  +VYGYAIVVPLA+YF
Sbjct: 120 PVWVSTTLIFVLASLGNLATYLIQKHTDHKASWSFEVGYVNVAVFSVYGYAIVVPLAFYF 179

Query: 178 LLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLK 237
           LL+Y+ S+  L++FWC+WGYSLFIFV +SFLL+IP+E+LRWIIIL AG  S  FVA NLK
Sbjct: 180 LLRYLESNPKLLQFWCMWGYSLFIFVPSSFLLVIPVEVLRWIIILAAGIDSGMFVATNLK 239

Query: 238 SYMEGNDLTVLVVASFCLQMALAIFIKVWFF 268
           + +E NDLT++VVA+F LQ+ALAIF KVWFF
Sbjct: 240 TLVEPNDLTIMVVAAFFLQLALAIFFKVWFF 270

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505556|gb|AFK40844.1| unknown [Lotus japonicus]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/272 (66%), Positives = 227/272 (83%), Gaps = 5/272 (1%)

Query: 2   DESYNNLPSSHLLGSVPAVVSEEKHATSYEAPEA-----TMQTFPPGNGGGSRPGYQSLG 56
           + SY  LP+SHLLGSVPA ++E+ +++ +    A      MQ FPP NGG    GYQ++G
Sbjct: 3   ESSYTGLPTSHLLGSVPAAITEDNNSSKHAPAPAPGPGANMQNFPPRNGGDGGRGYQTIG 62

Query: 57  SSSEGFEQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLY 116
           S +E FEQQPANNW+GFF++SSY+QYFN+DTD VI RL SSL+P++GDFFSKIDANPDLY
Sbjct: 63  SPTEAFEQQPANNWRGFFNVSSYSQYFNIDTDDVITRLISSLNPVAGDFFSKIDANPDLY 122

Query: 117 GLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYY 176
           GL+WISTTLVF+LAS GN  TYLMQK+ + S+SWSFDVS+VN+AAC++YGY IVVP+AYY
Sbjct: 123 GLVWISTTLVFILASLGNLGTYLMQKHADKSSSWSFDVSYVNMAACSIYGYTIVVPVAYY 182

Query: 177 FLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNL 236
           F LQYMGS+ASLVRFWC+WGYSL IF ++SFLL+IP+E+LRW+IILL+G  S+ FVA NL
Sbjct: 183 FFLQYMGSNASLVRFWCMWGYSLTIFNISSFLLIIPVEILRWLIILLSGGASASFVALNL 242

Query: 237 KSYMEGNDLTVLVVASFCLQMALAIFIKVWFF 268
           +SY+E  DL V VVA+F LQ+ALA+FIKVWFF
Sbjct: 243 RSYIESVDLQVAVVAAFFLQIALAVFIKVWFF 274

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492413|ref|XP_003616495.1| YIPF1-like protein [Medicago truncatula] gi|355517830|gb|AES99453.1| YIPF1-like protein [Medicago truncatula]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/272 (65%), Positives = 226/272 (83%), Gaps = 4/272 (1%)

Query: 1   MDES--YNNLPSSHLLGSVPAVVSEEKHATSYEAPEATMQTFPPGNGGGSRP--GYQSLG 56
           M+ES  Y  LP+SHLLGSVPAV+ E +  T +  PEA MQ FPP   GG R   GYQ++G
Sbjct: 1   MEESSSYTGLPTSHLLGSVPAVIVEGEKTTKHVDPEANMQIFPPAANGGDRGRGGYQTVG 60

Query: 57  SSSEGFEQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLY 116
           + +E FEQQP NNW+GFFS+SSY+QYF+VDTD V+ RL SS +P+ GDFFSKIDANPDLY
Sbjct: 61  TPTEAFEQQPTNNWRGFFSVSSYSQYFDVDTDAVMTRLISSFNPVGGDFFSKIDANPDLY 120

Query: 117 GLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYY 176
           GLIWISTTLVF+LAS GN AT+LMQ++ +S+ SWSFDVS++N AA ++YGYAIVVP+AYY
Sbjct: 121 GLIWISTTLVFVLASLGNLATFLMQQHADSATSWSFDVSYMNTAAWSIYGYAIVVPMAYY 180

Query: 177 FLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNL 236
           F LQYMGS+A+LVRFWC+WGYSL IF+++SFLL+IP+E+LRW I L+ G  S+ FVA NL
Sbjct: 181 FFLQYMGSNANLVRFWCMWGYSLSIFIISSFLLIIPVEILRWFITLITGVASASFVALNL 240

Query: 237 KSYMEGNDLTVLVVASFCLQMALAIFIKVWFF 268
           +SY+EGND++V ++A+F LQ+ LA+FIKVWFF
Sbjct: 241 RSYIEGNDISVAIMAAFFLQIGLAVFIKVWFF 272

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:504955927	276	AT2G39805 "AT2G39805" [Arabido	0.996	0.971	0.671	1.5e-99
TAIR|locus:2096324	281	AT3G05280 "AT3G05280" [Arabido	0.970	0.928	0.384	2.9e-48
TAIR|locus:2146435	282	AT5G27490 "AT5G27490" [Arabido	0.970	0.925	0.394	6e-48
DICTYBASE|DDB_G0281587	347	yipf1 "Yip1 domain-containing	0.713	0.553	0.355	5.4e-31
FB|FBgn0030435	360	CG4645 [Drosophila melanogaste	0.814	0.608	0.318	8.4e-28
ASPGD|ASPL0000010437	301	AN4017 [Emericella nidulans (t	0.866	0.774	0.303	6.6e-26
UNIPROTKB|B7Z6F5	331	YIPF1 "Protein YIPF1" [Homo sa	0.929	0.755	0.311	4.6e-25
UNIPROTKB|Q9Y548	306	YIPF1 "Protein YIPF1" [Homo sa	0.929	0.816	0.311	4.6e-25
MGI|MGI:1915532	306	Yipf1 "Yip1 domain family, mem	0.936	0.823	0.297	5.9e-25
ZFIN|ZDB-GENE-040724-124	304	yipf2 "Yip1 domain family, mem	0.728	0.644	0.355	7.6e-25

TAIR|locus:504955927 AT2G39805 "AT2G39805" [Arabidopsis thaliana (taxid:3702)]

 Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
 Identities = 186/277 (67%), Positives = 229/277 (82%)

Query:     1 MDESYNNLPSSHLLGSVPAVVSEEKHATSY------EAPEATMQTFPPGNGGGSRPGYQS 54
             MDES+ NL SSHLLGSVPAV+S++K +T+       E P A+MQ FPP N G +  GYQ+
Sbjct:     1 MDESFANLQSSHLLGSVPAVISDDKRSTNVPIASVNEGPSASMQIFPP-NLGNNTKGYQT 59

Query:    55 LGSSS-EGFEQQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANP 113
             L S + EG  QQP+NNWKGFF++ SYTQYF+VDTD+V+NRL SSL+P SGDFF+KIDANP
Sbjct:    60 LESPTVEGPAQQPSNNWKGFFNVYSYTQYFDVDTDVVLNRLMSSLYPTSGDFFNKIDANP 119

Query:   114 DLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPL 173
             DLYGL+WI TTLVF+LAS GNCATYL++K T+S+A W FDV+++N+AA  +YGYAI+VPL
Sbjct:   120 DLYGLVWICTTLVFVLASLGNCATYLVKKRTDSNAPWIFDVNYMNLAASIIYGYAIIVPL 179

Query:   174 AYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVA 233
              +YF L+YMGS A L+RFWCLWGYSLFIFV TS  LLIP+E LRW+IILLAG+ SSCFVA
Sbjct:   180 GFYFALRYMGSKADLLRFWCLWGYSLFIFVPTSLPLLIPVEFLRWVIILLAGSASSCFVA 239

Query:   234 FNLKSYME-GNDLTVLVVASFCLQMALAIFIKVWFFP 269
              NL+SY+E  ND+TV++ A+F LQM L+IFIKVWFFP
Sbjct:   240 LNLRSYLETNNDITVVMAAAFGLQMVLSIFIKVWFFP 276

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2096324 AT3G05280 "AT3G05280" [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 106/276 (38%), Positives = 162/276 (58%)

Query:     4 SYNNLPSSHLLGSVPAVVSEEKHATSYEAPEATMQTFPPG--NG---GGSRP---GYQSL 55
             +Y  + S  + GSVP+V  +  H T+ +  E+ +QTFPP    G   GGS P      S 
Sbjct:     6 NYTTIDSQKVSGSVPSV-PDPGH-TTVKFAESNLQTFPPSATQGKISGGSNPPRDADDSF 63

Query:    56 GSSSEGFEQQP-ANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPD 114
                  G   +P +  W   F++ +Y  +F+VDT  V+ RL  SL P  G F  K    PD
Sbjct:    64 SGHGNGSTDEPQSGGWLHKFTVGAYKPFFDVDTSDVVERLKESLFPFRGTFTEKTADKPD 123

Query:   115 LYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLA 174
             LYG  WI TTL+F+ AS G   TY+  K+      W++D++ V  +A   YGY  +VPLA
Sbjct:   124 LYGPFWICTTLIFVAASIGTFVTYIAHKWKKQE--WNYDINLVTWSAGVFYGYVTIVPLA 181

Query:   175 YYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAF 234
              Y +L+Y  + + LV+ +CL+GYSLF+F+    L ++P+E+ RW+I  +AG  S+ FVA 
Sbjct:   182 LYVVLKYFSAPSGLVQLFCLYGYSLFVFIPALCLSVVPVEIFRWVIAGVAGFMSATFVAL 241

Query:   235 NLKSYMEG-NDLTVLVVAS-FCLQMALAIFIKVWFF 268
             NLK+++    + ++L++AS F LQ+ALA+ +K++ F
Sbjct:   242 NLKAHINSAGERSILIIASIFLLQLALAVVLKLYIF 277

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2146435 AT5G27490 "AT5G27490" [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 109/276 (39%), Positives = 162/276 (58%)

Query:     4 SYNNLPSSHLLGSVPAVVSEEKHATSYEAPEATMQTFPPG--NG---GGSRPGYQSLGSS 58
             SY N+    + GSVPAV  +  H T   A ++ +QTFPP    G   GG+ P   +  + 
Sbjct:     7 SYTNIDHQKVSGSVPAV-PDPGHVTVKFA-DSNLQTFPPSATQGKISGGTNPPRDADDTF 64

Query:    59 SE---GFEQQP-ANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPD 114
             S    G   +P ++ W   F++ +Y  YF+VDT  V+ RL  SL P  G F  K   NPD
Sbjct:    65 SRPVNGTTDEPQSSGWLHRFTVGAYKPYFDVDTSDVVERLKESLFPFRGTFTEKTANNPD 124

Query:   115 LYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLA 174
             LYG  WI TTL+F+ AS G   TY+  K       W++D++ V  +A   YGY  +VPLA
Sbjct:   125 LYGPFWICTTLIFVAASIGTFVTYIAHKLKKQE--WNYDINLVTWSAGVFYGYVTIVPLA 182

Query:   175 YYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAF 234
              Y +L+Y  + + LV+ +CL+GYSLF+F+    L ++P+E+ RW+I  LAG  S+ FVA 
Sbjct:   183 LYVVLKYFSAPSGLVQLFCLYGYSLFVFIPALCLSVVPLEIFRWVIAGLAGFMSATFVAL 242

Query:   235 NLKSYME--GNDLTVLVVASFCLQMALAIFIKVWFF 268
             NLK+++   G    ++VV+ F LQ+AL++ +K++ F
Sbjct:   243 NLKAHINSAGERWFLIVVSIFLLQLALSVVLKLYLF 278

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=RCA

DICTYBASE|DDB_G0281587 yipf1 "Yip1 domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 71/200 (35%), Positives = 117/200 (58%)

Query:    73 FFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVFMLASF 132
             F+ +  Y   FNVDT  V  RL  S+ P+   FF+ I  NPDLYG  W+ T+LVF++A  
Sbjct:   125 FYEVPYYRFLFNVDTKEVGLRLIRSMLPIKFSFFNLIRENPDLYGPFWVLTSLVFIVAVT 184

Query:   133 GNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGSSASLVRFW 192
              N   Y    +++   SW  D+  +  +A T+YGY+ V+PL  + + ++M     L+   
Sbjct:   185 SNLNEYF---HSSDHKSWEVDIQKIVYSAITIYGYSFVIPLILWGIFKWMNLGLRLLDML 241

Query:   193 CLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKSYMEGNDLTV--LVV 250
             C++GY+LFIFV  S L +IP++L++WII+ +A   S  F+  N+ + ++  D T   L++
Sbjct:   242 CIYGYTLFIFVPASILCVIPLQLVQWIIVAIASIVSGLFLVTNIFTPLK-EDFTKRGLII 300

Query:   251 ASF--CLQMALAIFIKVWFF 268
              +    L + LA+ +K++FF
Sbjct:   301 CAVIGALHIGLALVLKLYFF 320

GO:0016020 "membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0030435 CG4645 [Drosophila melanogaster (taxid:7227)]

 Score = 289 (106.8 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
 Identities = 78/245 (31%), Positives = 125/245 (51%)

Query:    44 NGGGSRPGYQSLGSSSEGFEQQPANNWK-GFFSISSYTQYFNVDTDIVINRLFSSLHP-- 100
             + GGS+P   SL  S+ G         K   F+I  Y Q+FNVDT +V+ R+ +S+ P  
Sbjct:    81 SSGGSQPQNSSLDGSAGG----GGGGAKLSLFTIEYYQQFFNVDTYMVLERIANSMIPKR 136

Query:   101 LSGDFFS-KIDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNV 159
              SG++    I  NPDLYG  WI+ TL+F +A  GN A+YL Q     +  W ++   V+ 
Sbjct:   137 ASGNYLRMNIGENPDLYGPFWITVTLIFSIAISGNIASYLQQ--ATDAYKWHYNFHLVSY 194

Query:   160 AACTVYGYAIVVPLAYYFLLQYM-----------GSSAS----LVRFWCLWGYSLFIFVV 204
             AA +++ YA ++P   + L +Y              SAS    L+   C++GYSL I++ 
Sbjct:   195 AATSIFLYANILPAVLWALFKYSLKPVDSADAVETDSASYMPSLLSLMCIYGYSLAIYIP 254

Query:   205 TSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKSYMEGNDLTV-LVVASFCLQMALAIFI 263
              S L +I I LL+W++++ A   S   +   L   +  +  ++ L+V      + LA   
Sbjct:   255 VSILWVINISLLQWLLVITAALLSGTVLIAVLTPALRNSQFSLFLIVGILSAHVVLAAGF 314

Query:   264 KVWFF 268
              ++FF
Sbjct:   315 LLYFF 319

GO:0016020 "membrane" evidence=IEA

ASPGD|ASPL0000010437 AN4017 [Emericella nidulans (taxid:162425)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 77/254 (30%), Positives = 129/254 (50%)

Query:    24 EKHATSYEAPEATMQTFPP-----GNGGGSRPGYQSLGSSSEGFEQQPANNWKGFFSISS 78
             E H +++E  +   ++ P      G+GGGS     S  + S G    P  +   ++SI  
Sbjct:    29 EFHPSNFENDQRNAKSHPDNAAFLGSGGGS----SSRRNRSPG--GTPTKH--AWWSIHY 80

Query:    79 YTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVFMLASFGNCATY 138
             Y QYF+VDT+ V+ R  +S++P S +F   ++ N DLYG  WI+TT++ +L   G  + +
Sbjct:    81 YEQYFDVDTNEVLRRCVASVYPRS-NFLDVLEGNADLYGPFWIATTVIVILFLTGTISQW 139

Query:   139 LMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGSS-ASLVRFWCLWGY 197
             L     N    + +D + ++ AA  VYGY   +P+A +  L++ GSS A LV  W L+GY
Sbjct:   140 LSN---NDKEHFKYDFTLLSGAAGLVYGYTFALPIALWGALKWFGSSTADLVECWALYGY 196

Query:   198 SLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLKSYMEGNDLTV---LVVASFC 254
             S  +++  + +   P+  L W ++ +    +  F+  NL   +   D      L++    
Sbjct:   197 SNLVWIAVALVSWSPLTALNWALVGVGFAWTVFFLLRNLYPVLSATDAKASRALLILVIV 256

Query:   255 LQMALAIFIKVWFF 268
             L    AI IK+ FF
Sbjct:   257 LHAGFAIAIKILFF 270

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|B7Z6F5 YIPF1 "Protein YIPF1" [Homo sapiens (taxid:9606)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 85/273 (31%), Positives = 135/273 (49%)

Query:    15 GSVPAVVSEEKHATSY--EAPEATMQTFPPGN--GGGSRPGYQSLGSSSEGFEQQPANNW 70
             G+    ++    AT+   E P  T +   PG+  G G     + LG+      +  A   
Sbjct:    38 GNAATSLTANPDATTVNIEDPGETPK-HQPGSPRGSGREEDDELLGNDDSDKTELLAGQK 96

Query:    71 KG--FFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSK--IDANPDLYGLIWISTTLV 126
             K   F++   Y  +F+VDT  V +R+  SL P+ G  F +  I +NPDLYG  WI  TLV
Sbjct:    97 KSSPFWTFEYYQTFFDVDTYQVFDRIKGSLLPIPGKNFVRLYIRSNPDLYGPFWICATLV 156

Query:   127 FMLASFGNCATYLMQKYTNSSASWSFDVSF--VNVAACTVYGYAIVVPLAYYFLLQYMGS 184
             F +A  GN + +L+        ++ +   F  V++AA  +Y YA +VPLA +  L +  S
Sbjct:   157 FAIAISGNLSNFLIHL---GEKTYHYVPEFRKVSIAATIIYAYAWLVPLALWGFLMWRNS 213

Query:   185 ------SASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNL-K 237
                   S S +   C++GYSLFI++ T+ L +IP + +RWI++++A   S   +A     
Sbjct:   214 KVMNIVSYSFLEIVCVYGYSLFIYIPTAILWIIPQKAVRWILVMIALGISGSLLAMTFWP 273

Query:   238 SYMEGNDLTVL--VVASFCLQMALAIFIKVWFF 268
             +  E N    L  +V    L M L++    +FF
Sbjct:   274 AVREDNRRVALATIVTIVLLHMLLSVGCLAYFF 306

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q9Y548 YIPF1 "Protein YIPF1" [Homo sapiens (taxid:9606)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 85/273 (31%), Positives = 135/273 (49%)

Query:    15 GSVPAVVSEEKHATSY--EAPEATMQTFPPGN--GGGSRPGYQSLGSSSEGFEQQPANNW 70
             G+    ++    AT+   E P  T +   PG+  G G     + LG+      +  A   
Sbjct:    13 GNAATSLTANPDATTVNIEDPGETPK-HQPGSPRGSGREEDDELLGNDDSDKTELLAGQK 71

Query:    71 KG--FFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSK--IDANPDLYGLIWISTTLV 126
             K   F++   Y  +F+VDT  V +R+  SL P+ G  F +  I +NPDLYG  WI  TLV
Sbjct:    72 KSSPFWTFEYYQTFFDVDTYQVFDRIKGSLLPIPGKNFVRLYIRSNPDLYGPFWICATLV 131

Query:   127 FMLASFGNCATYLMQKYTNSSASWSFDVSF--VNVAACTVYGYAIVVPLAYYFLLQYMGS 184
             F +A  GN + +L+        ++ +   F  V++AA  +Y YA +VPLA +  L +  S
Sbjct:   132 FAIAISGNLSNFLIHL---GEKTYHYVPEFRKVSIAATIIYAYAWLVPLALWGFLMWRNS 188

Query:   185 ------SASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNL-K 237
                   S S +   C++GYSLFI++ T+ L +IP + +RWI++++A   S   +A     
Sbjct:   189 KVMNIVSYSFLEIVCVYGYSLFIYIPTAILWIIPQKAVRWILVMIALGISGSLLAMTFWP 248

Query:   238 SYMEGNDLTVL--VVASFCLQMALAIFIKVWFF 268
             +  E N    L  +V    L M L++    +FF
Sbjct:   249 AVREDNRRVALATIVTIVLLHMLLSVGCLAYFF 281

GO:0016021 "integral to membrane" evidence=IEA

GO:0030133 "transport vesicle" evidence=IDA

MGI|MGI:1915532 Yipf1 "Yip1 domain family, member 1" [Mus musculus (taxid:10090)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 80/269 (29%), Positives = 134/269 (49%)

Query:    15 GSVPAVVSEEKHATSYEAPEATM--QTFPPGNGGGSRPGYQSLGSSSEGFEQQPANNWKG 72
             G+     + +    + E P  +   Q  PPG+ G      + LG++     +  A   + 
Sbjct:    15 GATLLAANPDATTINIEDPSVSFGHQPRPPGSVGREEDE-ELLGNNDSDETELLAGQKRS 73

Query:    73 --FFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSK--IDANPDLYGLIWISTTLVFM 128
               F++   Y  +F+VDT  V +R+  SL P+ G  F +  I +NPDLYG  WI  TLVF 
Sbjct:    74 SPFWTFEYYQTFFDVDTYQVFDRIKGSLLPVPGKNFVRLYIRSNPDLYGPFWICATLVFA 133

Query:   129 LASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGS---- 184
             +A  GN + +L+      +  +  +   V++AA  +Y YA +VPLA +  L +  S    
Sbjct:   134 IAISGNLSNFLIH-LGEKTYHYVPEFQKVSIAATVIYAYAWLVPLALWGFLLWRNSKVMS 192

Query:   185 --SASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLA-GTTSSCFVAFNLKSYME 241
               S S +   C++GYSLFI++ T+ L +IP  ++RW+++++A G + S  V     +  E
Sbjct:   193 MVSYSFLEIVCVYGYSLFIYIPTAVLWIIPQRVVRWVLVMIALGVSGSVLVMTFWPAVRE 252

Query:   242 GNDLTVL--VVASFCLQMALAIFIKVWFF 268
              N    L  +V    L + L++    +FF
Sbjct:   253 DNRRVALATIVTIVLLHVLLSVGCLAYFF 281

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-040724-124 yipf2 "Yip1 domain family, member 2" [Danio rerio (taxid:7955)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 74/208 (35%), Positives = 109/208 (52%)

Query:    72 GFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFSK--IDANPDLYGLIWISTTLVFML 129
             GF++   Y  +FNVDT  V++R+  S+ PL G  F K  I +NPDLYG  WI  TLVF L
Sbjct:    71 GFWTFEYYQSFFNVDTVQVLDRIKGSVMPLPGRNFIKHHIRSNPDLYGPFWICVTLVFSL 130

Query:   130 ASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGSSASLV 189
             A  GN +T+L +   N    +      V++AA TV+ YA +VPL  +  L +  S    +
Sbjct:   131 AISGNLSTFLSEM-GNPEYHYRPQFHRVSIAAVTVFLYAWLVPLGVWGFLTWRQSVERQI 189

Query:   190 RFW------CLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNL-KSYMEG 242
               +      C++GYSLFI++ TS L  IP   L+W++I++A   S   +      +  + 
Sbjct:   190 NGYTFLETVCVYGYSLFIYIPTSVLWTIPFNWLQWLLIVVAMVISGSVLVITFWPAVRDD 249

Query:   243 NDLTVL--VVASFCLQMALAIFIKVWFF 268
               LT    V     L   LA+  K++FF
Sbjct:   250 TKLTAFATVAVIVALHALLAVGCKLYFF 277

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
pfam04893	171	pfam04893, Yip1, Yip1 domain	2e-05

>gnl|CDD|218316 pfam04893, Yip1, Yip1 domain

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 19/112 (16%), Positives = 40/112 (35%)

Query: 112 NPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVV 171
            P L  L+    TL+  L         L    T    +    +  +      +     ++
Sbjct: 20  APWLPLLLLALLTLLLGLLLALLLGWLLGSGETIQGLTGGSALGSIIGGYLGLLLGLFLL 79

Query: 172 PLAYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILL 223
            L  + + +  G   S  +   L GY+L   ++   + L+   LL  +++L+
Sbjct: 80  ALLLHLIAKLFGGDGSFKQTLSLVGYALLPLILGGLIALLLSLLLGALLLLV 131

The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterized by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases. Length = 171

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
KOG3114	290	consensus Uncharacterized conserved protein [Funct	100.0
KOG2946	234	consensus Uncharacterized conserved protein [Funct	99.72
KOG3103	249	consensus Rab GTPase interacting factor, Golgi mem	99.49
COG5080	227	YIP1 Rab GTPase interacting factor, Golgi membrane	99.29
PF03878	240	YIF1: YIF1; InterPro: IPR005578 This family includ	99.26
PF04893	172	Yip1: Yip1 domain; InterPro: IPR006977 This entry	99.18
KOG3094	284	consensus Predicted membrane protein [Function unk	98.78
COG5197	284	Predicted membrane protein [Function unknown]	98.55
PF06930	170	DUF1282: Protein of unknown function (DUF1282); In	96.54

>KOG3114 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=6.6e-54  Score=390.44  Aligned_cols=261  Identities=30%  Similarity=0.461  Sum_probs=208.2

Q ss_pred             CCCCCCCCCCCCCcCcccCCccccccccCC------CCCCCCCCCCCCCCCCCCccCCCCCCcccccCCCCCccceeeee
Q 024346            4 SYNNLPSSHLLGSVPAVVSEEKHATSYEAP------EATMQTFPPGNGGGSRPGYQSLGSSSEGFEQQPANNWKGFFSIS   77 (269)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~si~   77 (269)
                      ++|-++.+..+|++|+.+++.+.+.....+      .++..+-++..+.  .++.+.+..++...|||. +.+-++|+++
T Consensus         2 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~~G~~~~~~~~--~~~~~~~~~~~~~~sqq~-~~~~~~~ti~   78 (290)
T KOG3114|consen    2 NLTFLDFDDVSGGFEDNPDAGGPNVIDTEYDPSARSGSTVGGGSDEYNE--QGGFDDSKATWLLQSQQV-SDQLSFFTIE   78 (290)
T ss_pred             CcchhhccccccccccCCCCCCCcccCCCCCCccCcCCcCCCCcccccc--cccccCCCcccccccccc-cCCcccccHH
Confidence            467788889999999998777644222111      1111111111100  122222223333233333 3334899999


Q ss_pred             cccccccCChHHHHHHhhhccccCCCccccccCCCCCchHHHHHHHHHHHHHHHhhhHHHHHhHhccCCCcceeeeecee
Q 024346           78 SYTQYFNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFV  157 (269)
Q Consensus        78 yY~~yFdVDT~~V~~Rl~~sl~P~~~~f~~~~~~~pDLYGP~WI~~TLif~l~i~~nl~~~l~~~~~~~~~~~~ydf~~l  157 (269)
                      ||||||||||.||++||++||+|+ +.+.+.++.|||||||||||+||||++++++|+.+||.+.... .++|.|||+++
T Consensus        79 yyq~fFdVDt~qV~~Rl~~SliP~-~~~~~~~~~~PDLYGPfWI~~TlVf~l~~~g~~~~~i~~~t~~-g~~~g~~f~~v  156 (290)
T KOG3114|consen   79 YYQPFFDVDTAQVRKRLKESLIPR-NYVRDQIQDNPDLYGPFWITATLVFALAISGNLATFIRNGTLK-GTAYGYDFGLV  156 (290)
T ss_pred             hhccccCCCHHHHHHHHHHhcCCc-cccccccCCCccccccHHHHHHHHHHHHHcccHHHHHHhcccc-ceeeecccchH
Confidence            999999999999999999999994 3356778999999999999999999999999999999987543 33699999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhCC-----CccHHHHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 024346          158 NVAACTVYGYAIVVPLAYYFLLQYMGS-----SASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFV  232 (269)
Q Consensus       158 ~~a~~~vy~Y~~lvPl~l~~~~k~~~~-----~~sl~~liclYGYSl~~~ipvsiL~~ip~~~lrWi~v~~~~~~S~~fl  232 (269)
                      ++|++.||+|++++|+++|.+++|++.     ..++.|++|+||||+++|+|..+++++|..++||++++.++..|+.++
T Consensus       157 ~saa~~iy~Y~~ivp~~l~~iL~~~~~~~~~~~~~l~~~~~iygysl~i~ip~~vl~iv~~~~~~wvl~~~~~~~S~~~L  236 (290)
T KOG3114|consen  157 TSAATLIYGYLTIVPLALWGILSWNGYSLLLHCYVLLELVCIYGYSLFIFIPLLVLWIVPSSMVQWVLVGTALGLSGTFL  236 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccccccceehhhHHHHHhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHHHH
Confidence            999999999999999999999999872     368999999999999999999899999999999999999999999999


Q ss_pred             HHhhccccc-CC---ceeehHHHHHHHHHHHHHHHHHhcCC
Q 024346          233 AFNLKSYME-GN---DLTVLVVASFCLQMALAIFIKVWFFP  269 (269)
Q Consensus       233 ~~~L~~~i~-~~---k~~l~v~~i~~lh~~lal~~K~~FF~  269 (269)
                      ..++++..+ ..   +..+.++.++++|+++|+++|+|||+
T Consensus       237 ~~~l~p~~~~~~~~~~a~~~iv~ivllh~lla~~~~lyfF~  277 (290)
T KOG3114|consen  237 AGTLWPAVRLDGILHFAFLLIVEIVLLHLLLALGFKLYFFD  277 (290)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhccceeEEec
Confidence            999999876 22   34567788899999999999999995

>KOG2946 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.72  E-value=9.8e-17  Score=141.26  Aligned_cols=151  Identities=20%  Similarity=0.263  Sum_probs=122.0

Q ss_pred             cCChHHHHHHhhhccccCCCccc--cccCCCCCchHHHHHHHHHHHHHHHhhhHHHHHhHhccCCCcceeeeeceehhhh
Q 024346           84 NVDTDIVINRLFSSLHPLSGDFF--SKIDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAA  161 (269)
Q Consensus        84 dVDT~~V~~Rl~~sl~P~~~~f~--~~~~~~pDLYGP~WI~~TLif~l~i~~nl~~~l~~~~~~~~~~~~ydf~~l~~a~  161 (269)
                      +-|-.+|..|+++++.|..- +.  .+..++||||||+-+|+-+.+++..++.       .   ++   .       --+
T Consensus        68 krD~~~I~~kl~~Vl~P~py-~~dk~~~lRDwDlWGPl~~~~~la~iL~~s~~-------~---~~---~-------~vF  126 (234)
T KOG2946|consen   68 KRDLRAIGSKLKHVLYPHPY-FEDKGQLLRDWDLWGPLFFCVFLALILSLSGS-------V---KS---A-------SVF  126 (234)
T ss_pred             HHHHHHHHhceEEEEccCCC-cccccceeecccccchhHHHHHHHHHHHhhcC-------c---cc---c-------hhH
Confidence            45888999999999999731 11  2357789999999999999888886653       1   11   1       122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHhhhhhHHHHHH-Hhhhh-hHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 024346          162 CTVYGYAIVVPLAYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTS-FLLLI-PIELLRWIIILLAGTTSSCFVAFNLKSY  239 (269)
Q Consensus       162 ~~vy~Y~~lvPl~l~~~~k~~~~~~sl~~liclYGYSl~~~ipvs-iL~~i-p~~~lrWi~v~~~~~~S~~fl~~~L~~~  239 (269)
                      +.+|..+|.+.++++++.|.+|++.+++|.+|+.|||++|....+ +.|.. +..++|.++..+|.+||++.-...+...
T Consensus       127 s~vf~i~wfG~~vvtln~kLLGgnIs~fQsl~IlGYCLfPl~v~ali~~~~~~l~~lr~vv~~~~~~WSsyaa~~~l~~~  206 (234)
T KOG2946|consen  127 AVVFAILWFGAVVVTLNIKLLGGNISFFQSLCILGYCLFPLVVAALIICLFRDLFFLRLVVTSIGLAWSSYAAMGFLSIS  206 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCceeEEeehhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence            678999999999999999999999999999999999999999996 56653 6788999999999999999888888877


Q ss_pred             ccCCceeehHHHHHHH
Q 024346          240 MEGNDLTVLVVASFCL  255 (269)
Q Consensus       240 i~~~k~~l~v~~i~~l  255 (269)
                      ..+.||.+++-.++.+
T Consensus       207 ~~~~kk~LavYPvFL~  222 (234)
T KOG2946|consen  207 QLPRKKLLAVYPVFLF  222 (234)
T ss_pred             ccccccceehhhHHHH
Confidence            7777887766555544

>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.49  E-value=4.4e-13  Score=119.40  Aligned_cols=154  Identities=20%  Similarity=0.265  Sum_probs=121.5

Q ss_pred             cCChHHHHHHhhhccccCCCccccccCCCCCchHHHHHHHHHHHHHHHhhhHHHHHhHhccCCCcceeeeeceehhhhHH
Q 024346           84 NVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACT  163 (269)
Q Consensus        84 dVDT~~V~~Rl~~sl~P~~~~f~~~~~~~pDLYGP~WI~~TLif~l~i~~nl~~~l~~~~~~~~~~~~ydf~~l~~a~~~  163 (269)
                      ++|.+++++|.+.+|.|+|..- ..+.+++||+||+-.|..+...+...|.               -  .|.       .
T Consensus        89 gInf~hI~~KT~~VLnP~r~~~-q~i~~d~DlaGPlvf~L~f~~flLl~gK---------------i--~Fg-------y  143 (249)
T KOG3103|consen   89 GINFDHIKQKTRAVLNPFRSAD-QSIMKDTDLAGPLVFCLLFGLFLLLAGK---------------I--HFG-------Y  143 (249)
T ss_pred             CCCHHHHHHHHhheecccccCc-eEEecCcccccchHHHHHHHHHHHhcCc---------------e--EEE-------E
Confidence            6899999999999999988622 3467899999999888887766554441               1  232       2


Q ss_pred             HHHHHHHHHHHHHHHHHHhC-CCccHHHHHHHHhhhhhHHHHHHHhhhh-h-HHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 024346          164 VYGYAIVVPLAYYFLLQYMG-SSASLVRFWCLWGYSLFIFVVTSFLLLI-P-IELLRWIIILLAGTTSSCFVAFNLKSYM  240 (269)
Q Consensus       164 vy~Y~~lvPl~l~~~~k~~~-~~~sl~~liclYGYSl~~~ipvsiL~~i-p-~~~lrWi~v~~~~~~S~~fl~~~L~~~i  240 (269)
                      |||.+.++.+-++.+++.++ .+.++.+..++.|||+.|.+..|.+.++ + ...++.++.+++.+||++.....+.+.+
T Consensus       144 Iygi~~~gsl~iy~L~nlm~~~nv~f~~~aSVlGYcLLPlvvlS~v~i~~~~~g~vg~il~~~~v~W~t~aaS~lfv~al  223 (249)
T KOG3103|consen  144 IYGISLLGSLSIYFLLNLMSNKNVSFGCVASVLGYCLLPLVVLSFVNIFVGLQGTVGYILSALFVLWCTYAASKLFVSAL  223 (249)
T ss_pred             EeeeHHHHHHHHHHHHHHHhhcCcceeeehHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            68888899999999999998 6789999999999999999999998864 4 3578999999999999988877777766


Q ss_pred             c-CCceeehHHHHHHHHHHHHHH
Q 024346          241 E-GNDLTVLVVASFCLQMALAIF  262 (269)
Q Consensus       241 ~-~~k~~l~v~~i~~lh~~lal~  262 (269)
                      + ++++.++.=.++.+--+|++.
T Consensus       224 ~~~~~rlLiaYp~~l~Y~~Fall  246 (249)
T KOG3103|consen  224 SMENQRLLVAYPCALLYGVFALI  246 (249)
T ss_pred             hccccchhhhhHHHHHHhhheeE
Confidence            6 455555544666666666554

>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]

Probab=99.29  E-value=6.4e-12  Score=110.25  Aligned_cols=151  Identities=23%  Similarity=0.294  Sum_probs=107.0

Q ss_pred             CChHHHHHHhhhccccCCCccccccCCCCCchHHHHHHHHHHHHHHHhhhHHHHHhHhccCCCcceeeeeceehhhhHHH
Q 024346           85 VDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAACTV  164 (269)
Q Consensus        85 VDT~~V~~Rl~~sl~P~~~~f~~~~~~~pDLYGP~WI~~TLif~l~i~~nl~~~l~~~~~~~~~~~~ydf~~l~~a~~~v  164 (269)
                      .+-..+++|...++.|++..-+ .+.+|+|||||+-.+..  +.++++        ...+ +      .|       +.+
T Consensus        67 i~F~~i~~ks~~vl~p~~~~~~-~i~~d~DL~gPliF~lL--~sLfLs--------la~~-s------hF-------gyi  121 (227)
T COG5080          67 INFGHIKSKSDDVLGPFDNKAF-DILADCDLWGPLIFILL--YSLFLS--------LAGK-S------HF-------GYI  121 (227)
T ss_pred             ccccccccccceeeecccccch-hhhhcccccccHHHHHH--HHHHHH--------hccc-c------ee-------ehh
Confidence            3445678888888999775222 35789999999765543  333332        2211 1      24       348


Q ss_pred             HHHHHHHHHHHHHHHHHhC-CCccHHHHHHHHhhhhhHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 024346          165 YGYAIVVPLAYYFLLQYMG-SSASLVRFWCLWGYSLFIFVVTSFLLLIP--IELLRWIIILLAGTTSSCFVAFNLKSYME  241 (269)
Q Consensus       165 y~Y~~lvPl~l~~~~k~~~-~~~sl~~liclYGYSl~~~ipvsiL~~ip--~~~lrWi~v~~~~~~S~~fl~~~L~~~i~  241 (269)
                      |+..|.+-+.+.+++|.++ .+.+++|.+|+.|||++|.+..|++|.+.  +.+.--++++++..||.+...-.+++.++
T Consensus       122 y~islfg~lsl~~~lrLl~~~ni~f~~~~SIlGYs~lPlv~~slv~~i~~~i~i~~~vv~~l~~~Ws~~AaS~v~~~~l~  201 (227)
T COG5080         122 YGISLFGTLSLHLLLRLLGHKNISFFSTISILGYSLLPLVFNSLVSIILGRILILGYVVVALFLIWSTYAASGVLKSKLQ  201 (227)
T ss_pred             hHHHHHHHHHHHHHHHHhccCceeeeehhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999 67899999999999999999999999863  33444455566889999888888877766


Q ss_pred             -CCceeehHHHHHHHHHHHH
Q 024346          242 -GNDLTVLVVASFCLQMALA  260 (269)
Q Consensus       242 -~~k~~l~v~~i~~lh~~la  260 (269)
                       ++|+.+++-.+...--+++
T Consensus       202 l~n~~llv~Ypl~LFY~~fa  221 (227)
T COG5080         202 LSNKRLLVVYPLLLFYNVFA  221 (227)
T ss_pred             hhhHHHHHHHHHHHHHhhhe
Confidence             5566555444333333333

>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins

Probab=99.26  E-value=5.8e-11  Score=107.44  Aligned_cols=163  Identities=20%  Similarity=0.249  Sum_probs=116.2

Q ss_pred             cCCCCCccceeeeecccccccCChHHHHHHhhhccccCCCccc------------cccCCCCCchHHHHHHHHHHHHHHH
Q 024346           64 QQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFF------------SKIDANPDLYGLIWISTTLVFMLAS  131 (269)
Q Consensus        64 ~~~~~~~~~~~si~yY~~yFdVDT~~V~~Rl~~sl~P~~~~f~------------~~~~~~pDLYGP~WI~~TLif~l~i  131 (269)
                      |..+++..++.+.+..|.|||||++-|.+||+--+.|+.....            +.....||||=|++-..|-|.+.+.
T Consensus        24 ~~v~~~~~~~~~~~~lk~YF~V~n~YV~~KL~lllfPf~~k~W~r~~~~~~~~~Pr~DvNAPDLYIPlMa~vTYiLl~g~  103 (240)
T PF03878_consen   24 EYVQKNLGRYVSVSSLKYYFAVDNSYVLKKLKLLLFPFLHKDWSRKYEQESYLPPREDVNAPDLYIPLMAFVTYILLSGL  103 (240)
T ss_pred             HHHHHHHhhhcCcccceeeEECCHHHHHHHHHHeecccccCCccccccccCCCCchhhccCcccccchHHHHHHHHHHHH
Confidence            3335566778888889999999999999999999999754211            1112359999999999999998776


Q ss_pred             hhhHHHHHhHhccCCCcceeeeeceehhhhHHHHHHHHHHHHHHHHHHHHhCC--CccHHHHHHHHhhhhhHHHHHHHhh
Q 024346          132 FGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQYMGS--SASLVRFWCLWGYSLFIFVVTSFLL  209 (269)
Q Consensus       132 ~~nl~~~l~~~~~~~~~~~~ydf~~l~~a~~~vy~Y~~lvPl~l~~~~k~~~~--~~sl~~liclYGYSl~~~ipvsiL~  209 (269)
                      ..++     +   + +  ++.  +.+...++-..+..++=-+++++.+..++.  +.++.|++|..||.-+.-|...+..
T Consensus       104 ~~G~-----~---g-~--F~P--e~Lg~~~s~al~~~~lEv~i~k~~~y~l~~~~~~~~lDlvay~GYKfv~ii~~~l~~  170 (240)
T PF03878_consen  104 ILGL-----Q---G-R--FSP--ELLGIQASSALVWWFLEVLIIKLGLYLLNISSSLPILDLVAYSGYKFVGIILTLLAS  170 (240)
T ss_pred             HHHh-----c---C-C--CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhcchHHHHHHHHHHH
Confidence            5432     1   1 1  333  334444444445555545566666666666  6799999999999965555444444


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 024346          210 LIPIELLRWIIILLAGTTSSCFVAFNLKSY  239 (269)
Q Consensus       210 ~ip~~~lrWi~v~~~~~~S~~fl~~~L~~~  239 (269)
                      .+-..+.-|+..+...+..+.|+.+.++..
T Consensus       171 ~l~~~~~yy~~~ly~~~a~~~Fl~RsLk~~  200 (240)
T PF03878_consen  171 LLFGSWVYYIALLYTSFANAFFLLRSLKRV  200 (240)
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444457889999999999999999998764

It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.

>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain

Probab=99.18  E-value=6.8e-10  Score=92.50  Aligned_cols=155  Identities=19%  Similarity=0.153  Sum_probs=109.6

Q ss_pred             ccCChHHHHHHhhhccccCCCccccccCCCCCchHHHHHHHHHHHHHHHhhhHHHHHhHhccCCCcceeeeeceehhhhH
Q 024346           83 FNVDTDIVINRLFSSLHPLSGDFFSKIDANPDLYGLIWISTTLVFMLASFGNCATYLMQKYTNSSASWSFDVSFVNVAAC  162 (269)
Q Consensus        83 FdVDT~~V~~Rl~~sl~P~~~~f~~~~~~~pDLYGP~WI~~TLif~l~i~~nl~~~l~~~~~~~~~~~~ydf~~l~~a~~  162 (269)
                      +.+|+++..+|+++.-.         .++++|+|+++|+.+++++.+....+...++.+........+..-......+..
T Consensus         1 vl~~P~~~f~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (172)
T PF04893_consen    1 VLFSPREFFRRLRESPR---------ISKSWWLPLLLVILLTLVFGLLSSLNIPWYVDSGGSAYMFSFGSLLGSIIGGFI   71 (172)
T ss_pred             CccCHHHHHHHHHhccc---------cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence            35788888888875433         245899999999999999999988777666654311100001111111122222


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHhhhhhHHHHHHHhhhhhHHH---HHHHHHHHHHHHHHHHHHHhhccc
Q 024346          163 TVYGYAIVVPLAYYFLLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIEL---LRWIIILLAGTTSSCFVAFNLKSY  239 (269)
Q Consensus       163 ~vy~Y~~lvPl~l~~~~k~~~~~~sl~~liclYGYSl~~~ipvsiL~~ip~~~---lrWi~v~~~~~~S~~fl~~~L~~~  239 (269)
                      ....-.++.+.++|.+.|.+|++.++.|.+|++|||.+|.+...+++.+....   +...+..++.+|+...+..-+++.
T Consensus        72 ~~~i~~~i~~~~~~~~~~~~gg~~~~~~~~~~~~ya~~P~~~~~~~~~~~~~~~~~~~~~~~~l~~iw~~~l~~~gl~~~  151 (172)
T PF04893_consen   72 IILIGWFILALILHLIAKLFGGKGSFKETFSVVGYALIPLLLGSLISIILSLFFGPLSLLVIILFSIWSAYLLVIGLREV  151 (172)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23356677889999999999999999999999999999999988888764332   345677888999999888888887


Q ss_pred             cc-CCcee
Q 024346          240 ME-GNDLT  246 (269)
Q Consensus       240 i~-~~k~~  246 (269)
                      -+ +.+|.
T Consensus       152 ~~~~~~ka  159 (172)
T PF04893_consen  152 HRLSRGKA  159 (172)
T ss_pred             hCCChhHH
Confidence            76 33443

The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane

>KOG3094 consensus Predicted membrane protein [Function unknown]

Probab=98.78  E-value=1.5e-07  Score=85.36  Aligned_cols=163  Identities=18%  Similarity=0.235  Sum_probs=105.3

Q ss_pred             cCCCCCccceeeeecccccccCChHHHHHHhhhccccCCC-ccc---c--------ccCCCCCchHHHHHHHHHHHHHHH
Q 024346           64 QQPANNWKGFFSISSYTQYFNVDTDIVINRLFSSLHPLSG-DFF---S--------KIDANPDLYGLIWISTTLVFMLAS  131 (269)
Q Consensus        64 ~~~~~~~~~~~si~yY~~yFdVDT~~V~~Rl~~sl~P~~~-~f~---~--------~~~~~pDLYGP~WI~~TLif~l~i  131 (269)
                      |..+++..++.+....+-||+||+.-|.+||+-.++|+.. +..   |        .....||||=|++--+|-|.+...
T Consensus        71 E~v~~~~~k~~~~~~l~yYF~Vdn~YV~~KL~lilfPf~hk~W~~~~~~~~~~PPr~DvNaPDLYiP~MafiTYIll~gl  150 (284)
T KOG3094|consen   71 EYVEKNLGKYVSVPKLKYYFAVDNAYVGKKLKLILFPFLHKDWTRIYERESPLPPRYDVNAPDLYIPLMAFITYILLAGL  150 (284)
T ss_pred             HHHHHHhhhhccCccceEEEEechHHHhhhheEEEeeecCcchhhhhcccCCCCccccCCCcchhhhHHHHHHHHHHHHH
Confidence            3345666778888888999999999999999999999753 211   1        123469999999999999988775


Q ss_pred             hhhHHHHHhHhccCCCcceeeeeceehhhhHHHHHHHHHHHHHHHHHHHH-hCC--CccHHHHHHHHhhhhhHHHHHHHh
Q 024346          132 FGNCATYLMQKYTNSSASWSFDVSFVNVAACTVYGYAIVVPLAYYFLLQY-MGS--SASLVRFWCLWGYSLFIFVVTSFL  208 (269)
Q Consensus       132 ~~nl~~~l~~~~~~~~~~~~ydf~~l~~a~~~vy~Y~~lvPl~l~~~~k~-~~~--~~sl~~liclYGYSl~~~ipvsiL  208 (269)
                      .-.+     ++    +  ++.+-  +..-++--..+ +++=+++..+..| ++.  ..+.++++|.-||..+..|.+.+.
T Consensus       151 ~lGl-----qg----~--FsPE~--Lg~~~s~al~~-v~le~l~l~l~lY~l~vs~~ls~ldllAysGYKfv~liL~~L~  216 (284)
T KOG3094|consen  151 LLGL-----QG----R--FSPEA--LGILASKALAW-VILEVLLLKLGLYLLNVSSSLSTLDLLAYSGYKFVGLILAQLT  216 (284)
T ss_pred             Hhhh-----cc----C--CCHHH--HHHHHHHHHHH-HHHHHHHHHHHHheecccCCcchhHhhhhcccchHHHHHHHHh
Confidence            5432     11    1  22221  21111111112 2233344444444 343  679999999999998777776666


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 024346          209 LLIPIELLRWIIILLAGTTSSCFVAFNLKSYM  240 (269)
Q Consensus       209 ~~ip~~~lrWi~v~~~~~~S~~fl~~~L~~~i  240 (269)
                      -++-..+...++...-.+.-+.|+++.++..+
T Consensus       217 k~~~~~~~yyi~~~yt~~a~gvFLlRSlK~~l  248 (284)
T KOG3094|consen  217 KLLFGPYGYYIALAYTYLAFGVFLLRSLKRAL  248 (284)
T ss_pred             hheecchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55433345555555555666778999887654

>COG5197 Predicted membrane protein [Function unknown]

Probab=98.55  E-value=1.5e-06  Score=77.43  Aligned_cols=153  Identities=20%  Similarity=0.255  Sum_probs=97.9

Q ss_pred             ceeeeecccccccCChHHHHHHhhhccccCCCcccc------------ccCCCCCchHHHHHHHHHHHHHHHhhhHHHHH
Q 024346           72 GFFSISSYTQYFNVDTDIVINRLFSSLHPLSGDFFS------------KIDANPDLYGLIWISTTLVFMLASFGNCATYL  139 (269)
Q Consensus        72 ~~~si~yY~~yFdVDT~~V~~Rl~~sl~P~~~~f~~------------~~~~~pDLYGP~WI~~TLif~l~i~~nl~~~l  139 (269)
                      .-.+..-.+-|||||++-|.+|++--++|+.+....            .....||+|=|.+--+|-|.+...-.++.   
T Consensus        76 ~~~s~~~~~tYF~V~n~yVi~KL~LIlfPf~nk~W~r~gd~eg~~pp~~d~nsPdmY~P~M~fvtyILl~~~~~GL~---  152 (284)
T COG5197          76 NAASSQQISTYFQVSNRYVINKLKLILFPFLNKNWQRIGDSEGFLPPRDDVNSPDMYMPIMGFVTYILLWNTQQGLK---  152 (284)
T ss_pred             ccccccceeEEEEechHhHHhhhheEEeecccchhhhccCCCCCCCchhhcCCccccchHHHHHHHHHHHHHHhhcc---
Confidence            345777889999999999999999999997652211            12346999999999999999887654431   


Q ss_pred             hHhccCCCcceee-eeceehhhhHHHHHHHHHHHHHHHHHHHH---hCCCccHHHHHHHHhhhhhHHHHHHHhhhhhHHH
Q 024346          140 MQKYTNSSASWSF-DVSFVNVAACTVYGYAIVVPLAYYFLLQY---MGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIEL  215 (269)
Q Consensus       140 ~~~~~~~~~~~~y-df~~l~~a~~~vy~Y~~lvPl~l~~~~k~---~~~~~sl~~liclYGYSl~~~ipvsiL~~ip~~~  215 (269)
                           ++   ++. |+......+.   .. .++-+++.-+.-|   .+...++++++|.-||..++.|...++-.+...|
T Consensus       153 -----g~---F~PE~lg~~~s~~~---a~-v~v~~l~trlg~Yll~~s~~~~~ldllaysGYKfV~liL~qL~k~~~Mp~  220 (284)
T COG5197         153 -----GS---FNPEDLGYKLSSTL---AF-VCVDLLITRLGLYLLIDSKIPSFLDLLAYSGYKFVPLILAQLLKNVTMPF  220 (284)
T ss_pred             -----cC---CCHHHhhHHHHHHH---HH-HHHHHHHHHhceEEEeecccchhhhhhhhcccccHHHHHHHHhhhccccH
Confidence                 10   121 1221111111   11 1122222222222   2344689999999999988888777776655445


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccc
Q 024346          216 LRWIIILLAGTTSSCFVAFNLKSY  239 (269)
Q Consensus       216 lrWi~v~~~~~~S~~fl~~~L~~~  239 (269)
                      ..-++...-.+.-+.|+.+.++-.
T Consensus       221 v~~i~~~Ylyiaf~vFLlRSlK~~  244 (284)
T COG5197         221 VLNILIFYLYIAFGVFLLRSLKFN  244 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555555666667778888888643

>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length

Probab=96.54  E-value=0.11  Score=44.24  Aligned_cols=80  Identities=18%  Similarity=0.246  Sum_probs=60.8

Q ss_pred             HHHHHHHHH-HHHHHHH---HHHHhCCCccHHHHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024346          162 CTVYGYAIV-VPLAYYF---LLQYMGSSASLVRFWCLWGYSLFIFVVTSFLLLIPIELLRWIIILLAGTTSSCFVAFNLK  237 (269)
Q Consensus       162 ~~vy~Y~~l-vPl~l~~---~~k~~~~~~sl~~liclYGYSl~~~ipvsiL~~ip~~~lrWi~v~~~~~~S~~fl~~~L~  237 (269)
                      ..+.+|.++ +.+.-++   +.|..+++.++-|..-..||+.+|.....++..+|..++--....++..|+...++.-+.
T Consensus        66 ~~~~~~~~~gv~i~a~~i~~~~~~~~~~~s~~~~~~~a~y~~tPl~L~~i~~~~~~~~l~~~~~~~~~~~~~~Lly~Gv~  145 (170)
T PF06930_consen   66 IAVIFYIFGGVFIMAYLIHWMMKTFGGRPSYKKCLAFAAYAATPLFLGGIVNLYPSLWLTLLVGLIALIYSVYLLYLGVP  145 (170)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444 3333333   445567788999999999999999999999999988777777778888999999998887


Q ss_pred             cccc
Q 024346          238 SYME  241 (269)
Q Consensus       238 ~~i~  241 (269)
                      ...+
T Consensus       146 ~~~~  149 (170)
T PF06930_consen  146 IFMN  149 (170)
T ss_pred             HHhC
Confidence            7765

The function of is unknown although a number of the members are thought to be putative membrane proteins.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00