Citrus Sinensis ID: 024395

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS
cHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHcccccHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcHHHHHcccHHHHHHHHHHcccccc
cHHHHHHHHHHHcHHcccccHHcccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHcccccc
MASIMAAATassstslratpflgqsrttanalkdvvpmgnakytmgnelwygpdrvkylgpfsaqtpsyltgefpgdygwdtaglsadpeAFARNRALEVIHGRWAMLgalgcitpEVLEKWLrvdfkepvwfkaGAQIFseggldylgnpnlvHAQSILAVLGFQVVLMGLVEgfringlpgvgegndlypggqyfdplgladdpvTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLdhlenpvannawvyatkfvpgs
MASIMaaatassstslratpflgqsrttanalkdvvpmGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS
masimaaatassstsLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS
******************************ALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFV***
*AS*****************************************************KYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG*
**************SLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS
************************************************LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query268 2.2.26 [Sep-21-2011]
P27489265 Chlorophyll a-b binding p N/A no 0.988 1.0 0.891 1e-138
P27523268 Chlorophyll a-b binding p N/A no 0.985 0.985 0.840 1e-128
Q10HD0263 Chlorophyll a-b binding p no no 0.955 0.973 0.697 1e-98
A2XJ35263 Chlorophyll a-b binding p N/A no 0.955 0.973 0.697 1e-98
P14278265 Chlorophyll a-b binding p N/A no 0.947 0.958 0.689 3e-98
P27494265 Chlorophyll a-b binding p N/A no 0.947 0.958 0.681 1e-97
P12328264 Chlorophyll a-b binding p N/A no 0.947 0.962 0.687 2e-97
P12062265 Chlorophyll a-b binding p N/A no 0.947 0.958 0.677 3e-97
P27518265 Chlorophyll a-b binding p N/A no 0.947 0.958 0.677 3e-97
P12329262 Chlorophyll a-b binding p N/A no 0.955 0.977 0.7 7e-97
>sp|P27489|CB23_SOLLC Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1 Back     alignment and function desciption
 Score =  492 bits (1266), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/268 (89%), Positives = 257/268 (95%), Gaps = 3/268 (1%)

Query: 1   MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
           MAS+  AATASS+T ++ATPFLGQ++  AN L+DVV MG+A++TM N+LWYGPDRVKYLG
Sbjct: 1   MASM--AATASSTTVVKATPFLGQTKN-ANPLRDVVAMGSARFTMSNDLWYGPDRVKYLG 57

Query: 61  PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
           PFSAQTPSYL GEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCI PEVLE
Sbjct: 58  PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLE 117

Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
           KW++VDFKEPVWFKAG+QIFS+GGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING
Sbjct: 118 KWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 177

Query: 181 LPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
           LPGVGEGNDLYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 178 LPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237

Query: 241 PLENLLDHLENPVANNAWVYATKFVPGS 268
           PLENLLDHL+NPVANNAWVYATKFVPG+
Sbjct: 238 PLENLLDHLDNPVANNAWVYATKFVPGA 265
The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
Solanum lycopersicum (taxid: 4081)
>sp|P27523|CB23_HORVU Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1 Back     alignment and function description
>sp|Q10HD0|CB23_ORYSJ Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1 Back     alignment and function description
>sp|A2XJ35|CB23_ORYSI Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1 Back     alignment and function description
>sp|P14278|CB24_SOLLC Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1 Back     alignment and function description
>sp|P27494|CB23_TOBAC Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1 Back     alignment and function description
>sp|P12328|CB21_LEMGI Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1 Back     alignment and function description
>sp|P12062|CB26_PETSP Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1 Back     alignment and function description
>sp|P27518|CB21_GOSHI Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2 Back     alignment and function description
>sp|P12329|CB21_MAIZE Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
255569585268 chlorophyll A/B binding protein, putativ 1.0 1.0 0.929 1e-142
225461315266 PREDICTED: chlorophyll a-b binding prote 0.988 0.996 0.932 1e-142
359495474269 PREDICTED: chlorophyll a-b binding prote 1.0 0.996 0.907 1e-139
359495476269 PREDICTED: chlorophyll a-b binding prote 1.0 0.996 0.903 1e-139
224117282263 light-harvesting complex II protein Lhcb 0.977 0.996 0.923 1e-139
359807444268 uncharacterized protein LOC100779387 [Gl 0.996 0.996 0.907 1e-138
224122902263 light-harvesting complex II protein Lhcb 0.977 0.996 0.919 1e-138
20671265 chlorophyll a/b-binding protein [Pisum s 0.981 0.992 0.905 1e-138
359806176267 uncharacterized protein LOC100790960 [Gl 0.992 0.996 0.903 1e-138
56809383265 light-harvesting chlorophyll-a/b binding 0.970 0.981 0.911 1e-137
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis] gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 249/268 (92%), Positives = 256/268 (95%)

Query: 1   MASIMAAATASSSTSLRATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLG 60
           MAS + AATASSS+ LR TPFLGQ  ++AN LKDVV MGN KY MGNELWYGPDRVKYLG
Sbjct: 1   MASTVMAATASSSSVLRPTPFLGQRGSSANPLKDVVSMGNGKYIMGNELWYGPDRVKYLG 60

Query: 61  PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120
           PFSAQTPSYL GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE
Sbjct: 61  PFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE 120

Query: 121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180
           KW++VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING
Sbjct: 121 KWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRING 180

Query: 181 LPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240
           LPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 LPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240

Query: 241 PLENLLDHLENPVANNAWVYATKFVPGS 268
           PLENLLDHL+NPVANNAWVYATKF PGS
Sbjct: 241 PLENLLDHLDNPVANNAWVYATKFSPGS 268

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like [Vitis vinifera] gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa] gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max] gi|255646132|gb|ACU23552.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa] gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum] gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum] Back     alignment and taxonomy information
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max] gi|255635333|gb|ACU18020.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum sativum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
TAIR|locus:2162540265 LHCB3 "light-harvesting chloro 0.944 0.954 0.885 8.9e-125
TAIR|locus:2044988265 LHCB2.2 "photosystem II light 0.929 0.939 0.683 8.1e-92
TAIR|locus:2042148265 LHCB2.1 "photosystem II light 0.932 0.943 0.684 1.7e-91
TAIR|locus:2089139266 LHCB2.3 "photosystem II light 0.805 0.812 0.777 7.3e-91
TAIR|locus:2019287267 CAB3 "chlorophyll A/B binding 0.899 0.902 0.706 2.8e-89
TAIR|locus:2019372267 CAB2 "chlorophyll A/B-binding 0.899 0.902 0.706 2.8e-89
TAIR|locus:2019322267 CAB1 "chlorophyll A/B binding 0.899 0.902 0.706 2.8e-89
TAIR|locus:2040934265 LHB1B2 "photosystem II light h 0.899 0.909 0.710 3.6e-89
TAIR|locus:2040944266 LHB1B1 "light-harvesting chlor 0.805 0.812 0.771 7.5e-89
UNIPROTKB|P12331261 CAB2R "Chlorophyll a-b binding 0.802 0.823 0.785 1.2e-88
TAIR|locus:2162540 LHCB3 "light-harvesting chlorophyll B-binding protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
 Identities = 225/254 (88%), Positives = 241/254 (94%)

Query:    16 LRATPFLGQSRTTA-NALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEF 74
             L  T FLGQ++ ++ N L+DVV +G+ KYTMGN+LWYGPDRVKYLGPFS QTPSYLTGEF
Sbjct:    12 LTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFSVQTPSYLTGEF 71

Query:    75 PGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFK 134
             PGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGA GCITPEVL+KW+RVDFKEPVWFK
Sbjct:    72 PGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRVDFKEPVWFK 131

Query:   135 AGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGG 194
             AG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGL GVGEGNDLYPGG
Sbjct:   132 AGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGVGEGNDLYPGG 191

Query:   195 QYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVA 254
             QYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL+NPVA
Sbjct:   192 QYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVA 251

Query:   255 NNAWVYATKFVPGS 268
             NNAW +ATKF PG+
Sbjct:   252 NNAWAFATKFAPGA 265
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009765 "photosynthesis, light harvesting" evidence=IEA
GO:0015979 "photosynthesis" evidence=ISS;IMP
GO:0016020 "membrane" evidence=IEA
GO:0030076 "light-harvesting complex" evidence=ISS
GO:0005198 "structural molecule activity" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
TAIR|locus:2044988 LHCB2.2 "photosystem II light harvesting complex gene 2.2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042148 LHCB2.1 "photosystem II light harvesting complex gene 2.1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089139 LHCB2.3 "photosystem II light harvesting complex gene 2.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019287 CAB3 "chlorophyll A/B binding protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019372 CAB2 "chlorophyll A/B-binding protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019322 CAB1 "chlorophyll A/B binding protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040934 LHB1B2 "photosystem II light harvesting complex gene B1B2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040944 LHB1B1 "light-harvesting chlorophyll-protein complex II subunit B1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P12331 CAB2R "Chlorophyll a-b binding protein 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P08221CB21_CUCSANo assigned EC number0.750.84700.8901N/Ano
P06671CB22_MAIZENo assigned EC number0.66050.93280.9433N/Ano
P12328CB21_LEMGINo assigned EC number0.68790.94770.9621N/Ano
P12329CB21_MAIZENo assigned EC number0.70.95520.9770N/Ano
P27492CB21_TOBACNo assigned EC number0.68770.94020.9473N/Ano
P27493CB22_TOBACNo assigned EC number0.67530.94400.9547N/Ano
P27490CB28_PEANo assigned EC number0.67390.95140.9514N/Ano
P27491CB27_TOBACNo assigned EC number0.67910.97760.9812N/Ano
P27496CB25_TOBACNo assigned EC number0.67400.94400.9475N/Ano
P27497CB29_MAIZENo assigned EC number0.66420.93280.9433N/Ano
P27494CB23_TOBACNo assigned EC number0.68160.94770.9584N/Ano
P27495CB24_TOBACNo assigned EC number0.68140.94400.9475N/Ano
P20866CB2_PHYPANo assigned EC number0.69000.97380.9702N/Ano
P04779CB21_PETSPNo assigned EC number0.68140.96260.9699N/Ano
P22686CB2_CHLMONo assigned EC number0.74540.80970.8476N/Ano
P07371CB22_PEANo assigned EC number0.78990.80220.7992N/Ano
P07370CB2B_SOLLCNo assigned EC number0.68280.94400.9547N/Ano
P12469CB23_NICPLNo assigned EC number0.67030.94400.9475N/Ano
P27518CB21_GOSHINo assigned EC number0.67790.94770.9584N/Ano
P27489CB23_SOLLCNo assigned EC number0.89170.98881.0N/Ano
P04159CB21_PEANo assigned EC number0.77160.80220.9429N/Ano
P15193CB2A_PINSYNo assigned EC number0.77160.80220.7733N/Ano
P24006CB2A_PYRPYNo assigned EC number0.76250.80220.7733N/Ano
P12333CB2A_SPIOLNo assigned EC number0.71710.90290.9063N/Ano
P92919CB23_APIGRNo assigned EC number0.66290.94400.9583N/Ano
P04781CB23_PETSPNo assigned EC number0.67030.94400.9475N/Ano
P04780CB22_PETSPNo assigned EC number0.65560.94770.9513N/Ano
P04783CB25_PETSPNo assigned EC number0.67770.94400.9475N/Ano
P04782CB24_PETSPNo assigned EC number0.69770.97010.9774N/Ano
P13851CB21_SINALNo assigned EC number0.67160.94770.9548N/Ano
P07369CB2G_SOLLCNo assigned EC number0.68140.94400.9475N/Ano
A2XJ35CB23_ORYSINo assigned EC number0.69740.95520.9733N/Ano
P14278CB24_SOLLCNo assigned EC number0.68910.94770.9584N/Ano
P12062CB26_PETSPNo assigned EC number0.67790.94770.9584N/Ano
P10049CB21_PINTHNo assigned EC number0.68380.96260.9699N/Ano
P12470CB25_NICPLNo assigned EC number0.68400.94020.9473N/Ano
P12471CB21_SOYBNNo assigned EC number0.70110.89550.9795nono
P15194CB2B_PINSYNo assigned EC number0.78530.80220.7846N/Ano
P15195CB23_POLMUNo assigned EC number0.67040.94770.9584N/Ano
P27523CB23_HORVUNo assigned EC number0.84010.98500.9850N/Ano
P27520CB215_PEANo assigned EC number0.67790.94770.9584N/Ano
P14279CB25_SOLLCNo assigned EC number0.78920.81710.9240N/Ano
P08963CB22_HORVUNo assigned EC number0.67410.94400.9583N/Ano
P09756CB23_SOYBNNo assigned EC number0.78530.80220.8174nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027591001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (264 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
PLN00025262 PLN00025, PLN00025, photosystem II light harvestin 1e-171
PLN00171324 PLN00171, PLN00171, photosystem light-harvesting c 1e-76
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 3e-50
PLN00048262 PLN00048, PLN00048, photosystem I light harvesting 5e-49
PLN00147252 PLN00147, PLN00147, light-harvesting complex I chl 3e-38
PLN00098267 PLN00098, PLN00098, light-harvesting complex I chl 1e-36
PLN00187286 PLN00187, PLN00187, photosystem II light-harvestin 1e-34
PLN00097244 PLN00097, PLN00097, photosystem I light harvesting 1e-32
PLN00100246 PLN00100, PLN00100, light-harvesting complex chlor 3e-32
PLN00099243 PLN00099, PLN00099, light-harvesting complex IChlo 3e-32
PLN00101250 PLN00101, PLN00101, Photosystem I light-harvesting 4e-30
PLN00170255 PLN00170, PLN00170, photosystem II light-harvestin 1e-22
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 1e-08
PLN00089209 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c bi 2e-05
PLN00120202 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c bi 8e-04
PLN00120202 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c bi 0.001
>gnl|CDD|215033 PLN00025, PLN00025, photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information 
 Score =  473 bits (1218), Expect = e-171
 Identities = 191/266 (71%), Positives = 208/266 (78%), Gaps = 14/266 (5%)

Query: 13  STSLRATPFLGQSRTTANALKDVVPMGNAKYTM---------GNELWYGPDRVKYLGPFS 63
           + +L +T F GQ+       +    +GN + TM            +WYGPDR KYLGPFS
Sbjct: 1   AMALSSTAFAGQAALKPPN-ELSRKVGNGRVTMRKTVAKAAGSGSIWYGPDRPKYLGPFS 59

Query: 64  AQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWL 123
            +TPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+TPE+L K  
Sbjct: 60  GETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAK-N 118

Query: 124 RVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPG 183
            V F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+   QVVLMG VEG+R+NG   
Sbjct: 119 GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNG-GP 177

Query: 184 VGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
           +GEG D LYPGG  FDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 178 LGEGLDPLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 236

Query: 243 ENLLDHLENPVANNAWVYATKFVPGS 268
           ENL DHL +PVANNAW YAT FVPG 
Sbjct: 237 ENLADHLADPVANNAWAYATNFVPGK 262

Length = 262
>gnl|CDD|215088 PLN00171, PLN00171, photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|177680 PLN00048, PLN00048, photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>gnl|CDD|215076 PLN00147, PLN00147, light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>gnl|CDD|177716 PLN00098, PLN00098, light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>gnl|CDD|177781 PLN00187, PLN00187, photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>gnl|CDD|165670 PLN00097, PLN00097, photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>gnl|CDD|215054 PLN00100, PLN00100, light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>gnl|CDD|177717 PLN00099, PLN00099, light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>gnl|CDD|215055 PLN00101, PLN00101, Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>gnl|CDD|215087 PLN00170, PLN00170, photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|177710 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>gnl|CDD|215063 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>gnl|CDD|215063 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 268
PLN00025262 photosystem II light harvesting chlorophyll a/b bi 100.0
PLN00187286 photosystem II light-harvesting complex II protein 100.0
PLN00171324 photosystem light-harvesting complex -chlorophyll 100.0
PLN00098267 light-harvesting complex I chlorophyll a/b-binding 100.0
PLN00099243 light-harvesting complex IChlorophyll A-B binding 100.0
PLN00097244 photosystem I light harvesting complex Lhca2/4, ch 100.0
PLN00101250 Photosystem I light-harvesting complex type 4 prot 100.0
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 100.0
PLN00147252 light-harvesting complex I chlorophyll-a/b binding 100.0
PLN00100246 light-harvesting complex chlorophyll-a/b protein o 100.0
PLN00170255 photosystem II light-harvesting-Chl-binding protei 100.0
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 100.0
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 100.0
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 100.0
PLN00098 267 light-harvesting complex I chlorophyll a/b-binding 99.6
PLN00101 250 Photosystem I light-harvesting complex type 4 prot 99.59
PLN00147 252 light-harvesting complex I chlorophyll-a/b binding 99.54
PLN00170 255 photosystem II light-harvesting-Chl-binding protei 99.48
PLN00171 324 photosystem light-harvesting complex -chlorophyll 99.47
PLN00097 244 photosystem I light harvesting complex Lhca2/4, ch 99.47
PLN00025 262 photosystem II light harvesting chlorophyll a/b bi 99.45
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 99.44
PLN00100 246 light-harvesting complex chlorophyll-a/b protein o 99.42
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 99.4
PLN00187286 photosystem II light-harvesting complex II protein 99.39
PLN00099 243 light-harvesting complex IChlorophyll A-B binding 99.38
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 99.31
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 99.06
PHA0233735 putative high light inducible protein 98.16
PLN00084214 photosystem II subunit S (PsbS); Provisional 98.08
PLN00014250 light-harvesting-like protein 3; Provisional 97.6
PHA0233735 putative high light inducible protein 96.77
PLN00014250 light-harvesting-like protein 3; Provisional 93.65
PLN00084214 photosystem II subunit S (PsbS); Provisional 88.61
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3e-77  Score=543.53  Aligned_cols=219  Identities=84%  Similarity=1.411  Sum_probs=205.8

Q ss_pred             CCcccCCCCccccCCCCCCCCCCCCCCCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhhhhccCC
Q 024395           47 NELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD  126 (268)
Q Consensus        47 ~~~w~~~~r~~~~gpf~~~~P~~L~G~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~~~G~~  126 (268)
                      .+.||+|||++|||||+.++|+||||++|||||||||||++||++++||||+|||||||||||++||++||++++ .|+.
T Consensus        43 ~~~~~g~~R~~~l~p~~~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~-~g~~  121 (262)
T PLN00025         43 GSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAK-NGVK  121 (262)
T ss_pred             cccccCCCCccccCCcccCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhc-CCcC
Confidence            467999999999999977899999999999999999999999999999999999999999999999999999986 6788


Q ss_pred             CCcchhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHhhhhceeecCCCCCCCCCC-cCCCCCCCCCCCCCCC
Q 024395          127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADD  205 (268)
Q Consensus       127 f~~~~W~~ag~~~~~~g~l~y~~~p~~~~~~~i~~i~~~qv~l~g~~E~~r~~~~p~~g~g~~-~~PG~~~FDPLgl~~d  205 (268)
                      |.+++||++|.+++++|+++|+++|..++.|.+.+++++|+++||++|.+|+.+.+ .+++.| .||||+ ||||||.+|
T Consensus       122 ~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~~-~~~~~d~~yPG~~-FDPlGl~~d  199 (262)
T PLN00025        122 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGGP-LGEGLDPLYPGGS-FDPLGLADD  199 (262)
T ss_pred             cCcccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCCc-ccccccCcCCccc-CCccccCCC
Confidence            88889999999999999999999999989899989999999999999999987754 445445 899998 999999999


Q ss_pred             hHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccchhhhhhccCCCCC
Q 024395          206 PVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS  268 (268)
Q Consensus       206 p~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~hladP~~~n~~~~~~~~~~~~  268 (268)
                      +++++++|+||||||||||+|++||++|+++||+||++||.+||+||+|||||+++++|+|++
T Consensus       200 ~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~~n~~~~~~~~~~~~  262 (262)
T PLN00025        200 PDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAYATNFVPGK  262 (262)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccccchhhhhhhcCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999975

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
1vcr_A232 An Icosahedral Assembly Of Light-Harvesting Chlorop 1e-94
1rwt_A232 Crystal Structure Of Spinach Major Light-harvesting 2e-94
2bhw_A232 Pea Light-Harvesting Complex Ii At 2.5 Angstrom Res 2e-93
2wsc_3276 Improved Model Of Plant Photosystem I Length = 276 3e-33
2o01_2186 The Structure Of A Plant Photosystem I Supercomplex 2e-28
2wsc_2269 Improved Model Of Plant Photosystem I Length = 269 3e-27
2wsc_1241 Improved Model Of Plant Photosystem I Length = 241 4e-26
2o01_1187 The Structure Of A Plant Photosystem I Supercomplex 4e-26
2o01_3165 The Structure Of A Plant Photosystem I Supercomplex 6e-23
3lw5_1170 Improved Model Of Plant Photosystem I Length = 170 6e-23
3pl9_A243 Crystal Structure Of Spinach Minor Light-Harvesting 9e-23
3lw5_2176 Improved Model Of Plant Photosystem I Length = 176 7e-22
2wsc_4251 Improved Model Of Plant Photosystem I Length = 251 4e-21
3lw5_3172 Improved Model Of Plant Photosystem I Length = 172 5e-20
2o01_4165 The Structure Of A Plant Photosystem I Supercomplex 4e-15
3lw5_4166 Improved Model Of Plant Photosystem I Length = 166 2e-14
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB Protein Complex From Pea Thylakoid Membranes Length = 232 Back     alignment and structure 
Iteration: 1

 Score =  342 bits (877), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 173/219 (78%), Positives = 188/219 (85%), Gaps = 4/219 (1%)
Query: 50  WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
           WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVIH RWAMLG
Sbjct: 16  WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLG 75
Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
           ALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QV+L
Sbjct: 76  ALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVIL 134
Query: 170 MGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMF 228
           MG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAELKVKE+KNGRLAMFSMF
Sbjct: 135 MGAVEGYRIAGGP-LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMF 192
Query: 229 GFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
           GFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 193 GFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPG 231
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting Complex At 2.72 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I Length = 276 Back     alignment and structure
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 186 Back     alignment and structure
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I Length = 269 Back     alignment and structure
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I Length = 241 Back     alignment and structure
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 187 Back     alignment and structure
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I Length = 170 Back     alignment and structure
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting Complex Cp29 At 2.80 Angstrom Resolution Length = 243 Back     alignment and structure
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I Length = 176 Back     alignment and structure
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I Length = 251 Back     alignment and structure
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I Length = 172 Back     alignment and structure
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I Length = 166 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 1e-77
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 4e-56
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 2e-54
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 6e-54
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 8e-49
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 6e-47
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232 Back     alignment and structure
 Score =  234 bits (596), Expect = 1e-77
 Identities = 169/218 (77%), Positives = 184/218 (84%), Gaps = 2/218 (0%)

Query: 50  WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
           WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE F++NR LEVIH RWAMLG
Sbjct: 16  WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLG 75

Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
           ALG + PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QV+L
Sbjct: 76  ALGSVFPELLSRNG-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVIL 134

Query: 170 MGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
           MG VEG+RI G P     + LYPGG  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFG
Sbjct: 135 MGAVEGYRIAGGPLGEVVDPLYPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFG 193

Query: 230 FFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
           FFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct: 194 FFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPG 231
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Length = 276 Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Length = 241 Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269 Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Length = 251 Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Length = 243 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 100.0
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 100.0
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 100.0
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 100.0
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 100.0
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 100.0
2bhw_A 232 Chlorophyll A-B binding protein AB80; LHC-II, phot 99.44
2wsc_4 251 Chlorophyll A-B binding protein P4, chloroplastic; 99.43
2wsc_2 269 LHCA2, type II chlorophyll A/B binding protein fro 99.41
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 99.39
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 99.32
2wsc_1 241 AT3G54890, LHCA1; photosynthesis, electron transfe 99.29
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
Probab=100.00  E-value=8.6e-76  Score=526.74  Aligned_cols=225  Identities=77%  Similarity=1.313  Sum_probs=206.1

Q ss_pred             CccccCCCcccCCCCccccCCCCCCCCCCCCCCCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhh
Q 024395           41 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLE  120 (268)
Q Consensus        41 ~~~~~~~~~w~~~~r~~~~gpf~~~~P~~L~G~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~  120 (268)
                      +|...+.+.||++||++|+|||+.++|+||||++|||||||||||++|+|+++||||+|||||||||||++|+++||+++
T Consensus         7 ~~~~~~~~~~~~~~r~~~l~~~~~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~   86 (232)
T 2bhw_A            7 KKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLS   86 (232)
T ss_dssp             ---CCTTCTTSSTTCCCTTGGGCCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccCCcccCCCcccccCccccCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhc
Confidence            45555568999999999999986699999999999999999999999999999999999999999999999999999998


Q ss_pred             hhccCCCCcchhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHhhhhceeecCCCCCCCCCC-cCCCCCCCCC
Q 024395          121 KWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDP  199 (268)
Q Consensus       121 ~~~G~~f~~~~W~~ag~~~~~~g~l~y~~~p~~~~~~~i~~i~~~qv~l~g~~E~~r~~~~p~~g~g~~-~~PG~~~FDP  199 (268)
                      + .|+.|+++.|+++|.+++.+++++|+++|...+.|++.+++++|+++||++|.+|+.+++ .++..| .||||+ |||
T Consensus        87 ~-~G~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g~-~g~~~d~~~Pg~~-fdP  163 (232)
T 2bhw_A           87 R-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVVDPLYPGGS-FDP  163 (232)
T ss_dssp             T-TTCCCSCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEET-TEECSSSSCCCTT-SCT
T ss_pred             c-CCcCCcccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccCc-ccccccccCCCcc-ccc
Confidence            7 688888899999998888888899999998888898999999999999999999887644 333334 799998 999


Q ss_pred             CCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccchhhhhhccCCCCC
Q 024395          200 LGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPGS  268 (268)
Q Consensus       200 Lgl~~dp~~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~hladP~~~n~~~~~~~~~~~~  268 (268)
                      |||.+|+++++++|++|||||||||+||+|+++|+.+||++|++||.+|++||+||||++++++|+|++
T Consensus       164 lgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~~~~~~~~  232 (232)
T 2bhw_A          164 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK  232 (232)
T ss_dssp             TCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGTTTTCSCC
T ss_pred             chhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHHHhhcCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999985
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 268
d1rwta_218 f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi 4e-92
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  269 bits (688), Expect = 4e-92
 Identities = 171/218 (78%), Positives = 185/218 (84%), Gaps = 2/218 (0%)

Query: 50  WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLG 109
           WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG
Sbjct: 3   WYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLG 62

Query: 110 ALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVL 169
           ALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+   QV+L
Sbjct: 63  ALGCVFPELLARNG-VKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVIL 121

Query: 170 MGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 229
           MG VEG+RI G P     + LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFG
Sbjct: 122 MGAVEGYRIAGGPLGEVVDPLYPGG-SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 180

Query: 230 FFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG 267
           FFVQAIVTGKGPLENL DHL +PV NNAW +AT FVPG
Sbjct: 181 FFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPG 218

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
d1rwta_218 Chlorophyll a-b binding protein {Spinach (Spinacia 100.0
d1rwta_ 218 Chlorophyll a-b binding protein {Spinach (Spinacia 99.51
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=2.6e-75  Score=516.68  Aligned_cols=218  Identities=78%  Similarity=1.326  Sum_probs=195.9

Q ss_pred             CcccCCCCccccCCCCCCCCCCCCCCCCCCCCccccccCCCHHHHHHHHHHHHhhccchhhccchhhhhhHhhhhccCCC
Q 024395           48 ELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDF  127 (268)
Q Consensus        48 ~~w~~~~r~~~~gpf~~~~P~~L~G~~pGd~gfDPLGLs~dpe~l~~~ReaELkHGR~AMLAv~G~lvpE~l~~~~G~~f  127 (268)
                      ++||||||+||+|||+.++|+||||++|||||||||||++|+++++||||+|||||||||||++|+++||+++++ +..+
T Consensus         1 ~~~~~~~r~~~~~~~~~~~P~~LdGs~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~-~~~~   79 (218)
T d1rwta_           1 SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN-GVKF   79 (218)
T ss_dssp             CTTSSTTCCCTTGGGGCSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCCC
T ss_pred             CCCCCCCCcccCCccccCCCcccCCCCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhccC-CCCC
Confidence            479999999999999778999999999999999999999999999999999999999999999999999999874 4456


Q ss_pred             CcchhhhcccccccCCCcccCCCCchhhHHHHHHHHHHHHHHHhhhhceeecCCCCCCCCCCcCCCCCCCCCCCCCCChH
Q 024395          128 KEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPV  207 (268)
Q Consensus       128 ~~~~W~~ag~~~~~~g~l~y~~~p~~~~~~~i~~i~~~qv~l~g~~E~~r~~~~p~~g~g~~~~PG~~~FDPLgl~~dp~  207 (268)
                      ....|++++......+.++++..|.....|.+..++++++.+++.+|.+|..+++........|||+ +|||+++.++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g-~fdPlg~~~~~e  158 (218)
T d1rwta_          80 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGG-SFDPLGLADDPE  158 (218)
T ss_dssp             SCCSHHHHGGGGGSTTCBCGGGCTTSCCBCCHHHHHHHHHHHHHHHHHHHHHCBTTBCCSSSSCCCG-GGCTTCTTCSHH
T ss_pred             CCcccccccccccCcchhhhhcCchHHHHHHHHHHHHHHHHHHhhhhhhcccCCCcccccCCCCCCC-CccccccCCCHH
Confidence            6788999888777778888888887777788888888888899999998876554222222367777 499999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCCcchhhhhhhhcCCccchhhhhhccCCCC
Q 024395          208 TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLENPVANNAWVYATKFVPG  267 (268)
Q Consensus       208 ~~~~~k~kELkNGRLAMlA~~G~~~Q~~vtG~gPl~nL~~hladP~~~n~~~~~~~~~~~  267 (268)
                      +++++|+|||||||||||||+||++|+++||++|++||.+|++||+|||||+++||+|||
T Consensus       159 ~~~~~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h~~~P~~~n~~~~~~~~~~~  218 (218)
T d1rwta_         159 AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPG  218 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHCTTTSSGGGGTTSSCCC
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHHhcCchhhhHHHHHhccCCC
Confidence            999999999999999999999999999999999999999999999999999999999997
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure