Citrus Sinensis ID: 024450


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
MDFHTKPSSLSLILFTTLVIFVHAKTDSDITNLVYRGCAEQKFPNPSEVYTQNLNTLLSSLVSRSSQETFNTTTSGDEQTSITGLYQCRGDLTTPECYTCVSKIPDLAYKLCSKAVAARVQLSGCYLKYEVIGFSQVPETELLYKICGSTQVTGAAVFEQRRNTAFNMVTNGVKNSVELFYTGTYEHVYILGECEGDIASGNCGDCVKTATERAKNECDDSISAQIYLNKCFISYSYYPNGVPNPNSSLSSGAQGSIHRRQWQWQLE
ccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEcccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHccccccEEEEEccEEEEEEccccEEcccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccccEEEccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHccccccEEEEcccEEEEEEEcccccccccccccccccccccccccccccc
cccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHccccccEEEEEccEEEEEccccHHccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHccccccEEcccccEEEEEEEEcccccHHHHHHHHHHHHHHccHHcccccccEEEccccEEEEEEEcccccccccccccccccccccccEEEEcc
mdfhtkpsslslILFTTLVIFVHaktdsditnlvyrgcaeqkfpnpsevyTQNLNTLLSSLVSrssqetfntttsgdeqtsitglyqcrgdlttpecytcvskiPDLAYKLCSKAVAARVQLSGCYLKyevigfsqvpeTELLYKICGSTQVTGAAVFEQRRNTAFNMVTNGVKNSVELFYTGTYEHVYILGecegdiasgncgdcVKTATERAknecddsisAQIYLNKCFIsysyypngvpnpnsslssgaqgsihRRQWQWQLE
mdfhtkpsslslILFTTLVIFVHAKTDSDITNLVYRGCAEQKFPNPSEVYTQNLNTLLSSLVSRSSQETFntttsgdeqtsiTGLYQCRGDLTTPECYTCVSKIPDLAYKLCSKAVAARVQLSGCYLKYEVIGFSQVPETELLYKICGSTQVTGAAVFEQRRNTAFNMVTNGVKNSVELFYTGTYEHVYILGECEGDIASGNCGDCVKTATERAKNECDDSISAQIYLNKCFISYSYYPNGVPNPNSSLSSGAQGSIHRRQWQWQLE
MDFHTKPSSLSLILFTTLVIFVHAKTDSDITNLVYRGCAEQKFPNPSEVYTQNLNTLLSSLVSRSSQETFNTTTSGDEQTSITGLYQCRGDLTTPECYTCVSKIPDLAYKLCSKAVAARVQLSGCYLKYEVIGFSQVPETELLYKICGSTQVTGAAVFEQRRNTAFNMVTNGVKNSVELFYTGTYEHVYILGECEGDIASGNCGDCVKTATERAKNECDDSISAQIYLNKCFISYSYYPNGVPNPNSSLSSGAQGSIHRRQWQWQLE
*********LSLILFTTLVIFVHAKTDSDITNLVYRGCAEQKFPNPSEVYTQNLNTLL**********************SITGLYQCRGDLTTPECYTCVSKIPDLAYKLCSKAVAARVQLSGCYLKYEVIGFSQVPETELLYKICGSTQVTGAAVFEQRRNTAFNMVTNGVKNSVELFYTGTYEHVYILGECEGDIASGNCGDCVKTATERAKNECDDSISAQIYLNKCFISYSYYPN***************************
***********LILFTTLVIFVHAKTDSDITNLVYRGCAEQKFPNPSEVYTQNLNTLLSSLVSRSSQETFNTTTSGDEQTSITGLYQCRGDLTTPECYTCVSKIPDLAYKLCSKAVAARVQLSGCYLKYEVIGFSQVPETELLYKICGSTQVTGAAVFEQRRNTAFNMVTNGVKNSVELFYTGTYEHVYILGECEGDIASGNCGDCVKTATERAKNECDDSISAQIYLNKCFISYSYYPNG**************************
********SLSLILFTTLVIFVHAKTDSDITNLVYRGCAEQKFPNPSEVYTQNLNTLLSSLVS****************TSITGLYQCRGDLTTPECYTCVSKIPDLAYKLCSKAVAARVQLSGCYLKYEVIGFSQVPETELLYKICGSTQVTGAAVFEQRRNTAFNMVTNGVKNSVELFYTGTYEHVYILGECEGDIASGNCGDCVKTATERAKNECDDSISAQIYLNKCFISYSYYPNGVPNPNS********************
*DFHTKPSSLSLILFTTLVIFVHAKTDSDITNLVYRGCAEQKFPNPSEVYTQNLNTLLSSLVSRSSQETFNTTTSGDEQTSITGLYQCRGDLTTPECYTCVSKIPDLAYKLCSKAVAARVQLSGCYLKYEVIGFSQVPETELLYKICGSTQVTGAAVFEQRRNTAFNMVTNGVKNSVELFYTGTYEHVYILGECEGDIASGNCGDCVKTATERAKNECDDSISAQIYLNKCFISYSYYPNGVPNPN*********************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDFHTKPSSLSLILFTTLVIFVHAKTDSDITNLVYRGCAEQKFPNPSEVYTQNLNTLLSSLVSRSSQETFNTTTSGDEQTSITGLYQCRGDLTTPECYTCVSKIPDLAYKLCSKAVAARVQLSGCYLKYEVIGFSQVPETELLYKICGSTQVTGAAVFEQRRNTAFNMVTNGVKNSVELFYTGTYEHVYILGECEGDIASGNCGDCVKTATERAKNECDDSISAQIYLNKCFISYSYYPNGVPNPNSSLSSGAQGSIHRRQWQWQLE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query267 2.2.26 [Sep-21-2011]
Q6NM73307 Cysteine-rich repeat secr yes no 0.857 0.745 0.538 5e-64
O22784304 Cysteine-rich repeat secr no no 0.902 0.792 0.497 4e-62
Q8GXV7303 Cysteine-rich repeat secr no no 0.812 0.716 0.5 5e-57
Q0WPN8298 Cysteine-rich repeat secr no no 0.741 0.664 0.349 7e-30
Q6E263319 Cysteine-rich repeat secr no no 0.872 0.730 0.301 1e-29
Q9ZU94288 Cysteine-rich repeat secr no no 0.794 0.736 0.300 1e-24
Q8GUJ2299 Cysteine-rich repeat secr no no 0.891 0.795 0.306 1e-24
Q6NKQ9279 Cysteine-rich repeat secr no no 0.737 0.706 0.309 4e-24
Q9LV60263 Cysteine-rich repeat secr no no 0.823 0.836 0.235 1e-12
Q9SH43268 Putative cysteine-rich re no no 0.685 0.682 0.257 7e-11
>sp|Q6NM73|CRR3_ARATH Cysteine-rich repeat secretory protein 3 OS=Arabidopsis thaliana GN=CRRSP3 PE=2 SV=1 Back     alignment and function desciption
 Score =  244 bits (623), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 125/232 (53%), Positives = 167/232 (71%), Gaps = 3/232 (1%)

Query: 13  ILFTTLVIFVHAKTDSDITNLVYRGCAEQKFPNPSEVYTQNLNTLLSSLVSRSSQETFNT 72
           +LF  L + V + T ++ T L+Y+GCA Q+F +PS +Y+Q L+ +  SLVS+S++  F  
Sbjct: 16  LLFPDLNVVVKSAT-TEYTTLIYKGCARQQFSDPSGLYSQALSAMFGSLVSQSTKTRFYK 74

Query: 73  TTSGDEQTSITGLYQCRGDLTTPECYTCVSKIPDLAYKLCSKAVAARVQLSGCYLKYEVI 132
           TT+G   T+ITGL+QCRGDL+  +CY CVS++P L+ KLC K +A+RVQLSGCYL YEV 
Sbjct: 75  TTTGTSTTTITGLFQCRGDLSNHDCYNCVSRLPVLSDKLCGKTIASRVQLSGCYLLYEVS 134

Query: 133 GFSQVPETELLYKICGSTQVTGAAVFEQRRNTAFNMVTNGVKNSVELFYTGTYEHVYILG 192
           GFSQ+   E+L+K CG   + G   FE+RR+TAF ++ NGV  S   FY  TYE VY+LG
Sbjct: 135 GFSQISGMEMLFKTCGKNNIAGTG-FEERRDTAFGVMQNGVV-SGHGFYATTYESVYVLG 192

Query: 193 ECEGDIASGNCGDCVKTATERAKNECDDSISAQIYLNKCFISYSYYPNGVPN 244
           +CEGD+   +C  CVK A E+A+ EC  SIS QIYL+KCFI+YSYYPNGVP 
Sbjct: 193 QCEGDVGDTDCSGCVKNALEKAQVECGSSISGQIYLHKCFIAYSYYPNGVPR 244





Arabidopsis thaliana (taxid: 3702)
>sp|O22784|CRR11_ARATH Cysteine-rich repeat secretory protein 11 OS=Arabidopsis thaliana GN=CRRSP11 PE=2 SV=2 Back     alignment and function description
>sp|Q8GXV7|CRR56_ARATH Cysteine-rich repeat secretory protein 56 OS=Arabidopsis thaliana GN=CRRSP56 PE=1 SV=2 Back     alignment and function description
>sp|Q0WPN8|CRR60_ARATH Cysteine-rich repeat secretory protein 60 OS=Arabidopsis thaliana GN=CRRSP60 PE=1 SV=1 Back     alignment and function description
>sp|Q6E263|CRR39_ARATH Cysteine-rich repeat secretory protein 39 OS=Arabidopsis thaliana GN=CRRSP39 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZU94|CRR12_ARATH Cysteine-rich repeat secretory protein 12 OS=Arabidopsis thaliana GN=CRRSP12 PE=2 SV=2 Back     alignment and function description
>sp|Q8GUJ2|CRR2_ARATH Cysteine-rich repeat secretory protein 2 OS=Arabidopsis thaliana GN=CRRSP2 PE=2 SV=1 Back     alignment and function description
>sp|Q6NKQ9|CRR15_ARATH Cysteine-rich repeat secretory protein 15 OS=Arabidopsis thaliana GN=CRRSP15 PE=2 SV=1 Back     alignment and function description
>sp|Q9LV60|CRR55_ARATH Cysteine-rich repeat secretory protein 55 OS=Arabidopsis thaliana GN=CRRSP55 PE=2 SV=1 Back     alignment and function description
>sp|Q9SH43|CRR5_ARATH Putative cysteine-rich repeat secretory protein 5 OS=Arabidopsis thaliana GN=CRRSP5 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query267
449468710292 PREDICTED: cysteine-rich repeat secretor 0.883 0.808 0.602 2e-82
297744209312 unnamed protein product [Vitis vinifera] 0.880 0.753 0.616 6e-82
225437995291 PREDICTED: cysteine-rich repeat secretor 0.880 0.807 0.616 9e-82
147863793355 hypothetical protein VITISV_007000 [Viti 0.865 0.650 0.622 6e-81
449509447310 PREDICTED: cysteine-rich repeat secretor 0.794 0.683 0.633 1e-79
224070098243 predicted protein [Populus trichocarpa] 0.872 0.958 0.617 1e-79
356548095265 PREDICTED: cysteine-rich repeat secretor 0.835 0.841 0.596 1e-76
255571200299 DUF26 domain-containing protein 2 precur 0.868 0.775 0.600 6e-76
357510165286 Cysteine-rich repeat secretory protein [ 0.842 0.786 0.574 2e-71
388511127257 unknown [Medicago truncatula] 0.838 0.871 0.578 2e-71
>gi|449468710|ref|XP_004152064.1| PREDICTED: cysteine-rich repeat secretory protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 144/239 (60%), Positives = 187/239 (78%), Gaps = 3/239 (1%)

Query: 28  SDITNLVYRGCAEQKFPNPSEVYTQNLNTLLSSLVSRSSQETFNTTTSGDEQTSITGLYQ 87
           +D T+L+++GC++QKFP+PS++YTQNL +L S+L+S+SSQ+ F +T+SGD  TS+ GL+Q
Sbjct: 27  TDTTSLIFKGCSKQKFPDPSQIYTQNLKSLFSTLISQSSQKPFFSTSSGDGGTSLQGLFQ 86

Query: 88  CRGDLTTPECYTCVSKIPDLAYKLCSKAVAARVQLSGCYLKYEVIGFSQVPETELLYKIC 147
           CRGDL+ P+C  CVSKIP +A KLC +A+AARVQL+GCYL+YEV GF +V  TELL+K+C
Sbjct: 87  CRGDLSLPQCNDCVSKIPSMADKLCGQALAARVQLTGCYLRYEVAGFREVSGTELLFKVC 146

Query: 148 GSTQVTGAAVFEQRRNTAFNMVTNGVKNSVELFYTGTYEHVYILGECEGDIASGNCGDCV 207
           GS QV G+  FE+RRNTAF MV NGVKN   LFY G+Y  VY+LG+CEGD++ G+CG CV
Sbjct: 147 GSIQVAGSG-FEERRNTAFEMVENGVKNGGALFYAGSYRSVYVLGQCEGDLSEGDCGGCV 205

Query: 208 KTATERAKNECDDSISAQIYLNKCFISYSYYPNGVPNPNSSLSSGAQGSIHRRQWQWQL 266
           KTA E+   EC DSIS QIYLNKC+ISY+YYPNG+P+   SL   + GS H  Q    L
Sbjct: 206 KTAAEKVNGECGDSISGQIYLNKCYISYNYYPNGIPSI--SLGPFSVGSRHNTQRTVAL 262




Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744209|emb|CBI37179.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225437995|ref|XP_002273136.1| PREDICTED: cysteine-rich repeat secretory protein 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147863793|emb|CAN79351.1| hypothetical protein VITISV_007000 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449509447|ref|XP_004163591.1| PREDICTED: cysteine-rich repeat secretory protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224070098|ref|XP_002303114.1| predicted protein [Populus trichocarpa] gi|222844840|gb|EEE82387.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356548095|ref|XP_003542439.1| PREDICTED: cysteine-rich repeat secretory protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|255571200|ref|XP_002526550.1| DUF26 domain-containing protein 2 precursor, putative [Ricinus communis] gi|223534111|gb|EEF35828.1| DUF26 domain-containing protein 2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357510165|ref|XP_003625371.1| Cysteine-rich repeat secretory protein [Medicago truncatula] gi|355500386|gb|AES81589.1| Cysteine-rich repeat secretory protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|388511127|gb|AFK43625.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query267
TAIR|locus:2018314307 PDLP2 "AT1G04520" [Arabidopsis 0.902 0.785 0.528 7.2e-68
TAIR|locus:2051089304 PDLP3 "AT2G33330" [Arabidopsis 0.898 0.789 0.524 4.5e-66
TAIR|locus:2172492303 PDLP1 "plasmodesmata-located p 0.887 0.782 0.478 1.7e-59
TAIR|locus:2151709298 PDLP7 "plasmodesmata-located p 0.831 0.744 0.333 2e-31
TAIR|locus:2101811279 PDLP8 "AT3G60720" [Arabidopsis 0.831 0.795 0.304 1.2e-28
TAIR|locus:2100870319 PDLP4 "plasmodesmata-located p 0.715 0.598 0.339 1.9e-28
TAIR|locus:2033614299 HWI1 "HOPW1-1-INDUCED GENE1" [ 0.917 0.819 0.308 2.4e-28
TAIR|locus:2065450288 PDLP6 "AT2G01660" [Arabidopsis 0.816 0.756 0.304 3.5e-27
TAIR|locus:2166091263 AT5G48540 "AT5G48540" [Arabido 0.831 0.844 0.245 5.3e-17
TAIR|locus:2095662252 AT3G22060 "AT3G22060" [Arabido 0.820 0.869 0.238 6.9e-15
TAIR|locus:2018314 PDLP2 "AT1G04520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 129/244 (52%), Positives = 174/244 (71%)

Query:    13 ILFTTLVIFVHAKTDSDITNLVYRGCAEQKFPNPSEVYTQNLNTLLSSLVSRSSQETFNT 72
             +LF  L + V + T ++ T L+Y+GCA Q+F +PS +Y+Q L+ +  SLVS+S++  F  
Sbjct:    16 LLFPDLNVVVKSAT-TEYTTLIYKGCARQQFSDPSGLYSQALSAMFGSLVSQSTKTRFYK 74

Query:    73 TTSGDEQTSITGLYQCRGDLTTPECYTCVSKIPDLAYKLCSKAVAARVQLSGCYLKYEVI 132
             TT+G   T+ITGL+QCRGDL+  +CY CVS++P L+ KLC K +A+RVQLSGCYL YEV 
Sbjct:    75 TTTGTSTTTITGLFQCRGDLSNHDCYNCVSRLPVLSDKLCGKTIASRVQLSGCYLLYEVS 134

Query:   133 GFSQVPETELLYKICGSTQVTGAAVFEQRRNTAFNMVTNGVKNSVELFYTGTYEHVYILG 192
             GFSQ+   E+L+K CG   + G   FE+RR+TAF ++ NGV +    FY  TYE VY+LG
Sbjct:   135 GFSQISGMEMLFKTCGKNNIAGTG-FEERRDTAFGVMQNGVVSG-HGFYATTYESVYVLG 192

Query:   193 ECEGDIASGNCGDCVKTATERAKNECDDSISAQIYLNKCFISYSYYPNGVPNPNSSLSSG 252
             +CEGD+   +C  CVK A E+A+ EC  SIS QIYL+KCFI+YSYYPNGVP  +SS SS 
Sbjct:   193 QCEGDVGDTDCSGCVKNALEKAQVECGSSISGQIYLHKCFIAYSYYPNGVPRRSSSSSSS 252

Query:   253 AQGS 256
             +  S
Sbjct:   253 SSSS 256




GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0009506 "plasmodesma" evidence=IDA
GO:0010497 "plasmodesmata-mediated intercellular transport" evidence=IGI
GO:0046739 "spread of virus in multicellular host" evidence=IGI
TAIR|locus:2051089 PDLP3 "AT2G33330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172492 PDLP1 "plasmodesmata-located protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151709 PDLP7 "plasmodesmata-located protein 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101811 PDLP8 "AT3G60720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100870 PDLP4 "plasmodesmata-located protein 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033614 HWI1 "HOPW1-1-INDUCED GENE1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065450 PDLP6 "AT2G01660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166091 AT5G48540 "AT5G48540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095662 AT3G22060 "AT3G22060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6NM73CRR3_ARATHNo assigned EC number0.53870.85760.7459yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00028514001
SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (291 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
pfam01657106 pfam01657, Stress-antifung, Salt stress response/a 7e-18
pfam01657106 pfam01657, Stress-antifung, Salt stress response/a 3e-14
>gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal Back     alignment and domain information
 Score = 76.7 bits (189), Expect = 7e-18
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 42  KFPNPSEVYTQNLNTLLSSLVSRSSQET---FNTTTSGDEQTSITGLYQCRGDLTTPECY 98
            +   +  +  NLN LLSSL S ++  +   F   TSG    ++ GL QCRGDL+  +C 
Sbjct: 11  NYTTANSTFESNLNALLSSLSSNAASSSGKGFAAGTSGAAPDTVYGLAQCRGDLSASDCR 70

Query: 99  TCVSKIPDLAYKLCSKAVAARVQLSGCYLKYEVIGF 134
           +C++       + C      R+    C+L+YE   F
Sbjct: 71  SCLATAVSELRRCCPNKKGGRIWYDSCFLRYESYPF 106


This domain is often found in association with the kinase domains pfam00069 or pfam07714. In many proteins it is duplicated. It contains six conserved cysteines which are involved in disulphide bridges. It has a role in salt stress response and has antifungal activity. Length = 106

>gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 267
PF01657106 Stress-antifung: Salt stress response/antifungal; 99.93
PF01657106 Stress-antifung: Salt stress response/antifungal; 99.89
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function Back     alignment and domain information
Probab=99.93  E-value=4.6e-26  Score=177.36  Aligned_cols=100  Identities=33%  Similarity=0.638  Sum_probs=77.1

Q ss_pred             ccccC-C-Cccc-CCCChHHHHHHHHHHHhHhcCCc---CCcceeeccCCCCcEEEEEecCCCCChhchHHHHHHHHHHH
Q 024450           35 YRGCA-E-QKFP-NPSEVYTQNLNTLLSSLVSRSSQ---ETFNTTTSGDEQTSITGLYQCRGDLTTPECYTCVSKIPDLA  108 (267)
Q Consensus        35 ~~~C~-~-~~~~-~~~s~f~~nl~~ll~~L~~~a~~---~~f~~~~~g~~~~~vygl~~Cr~D~s~~~C~~Cl~~a~~~~  108 (267)
                      |+.|+ + .+++ +++++|++||+.||+.|..+++.   .+|+++..|.++++||||+||++|+++.+|..||+.|+.++
T Consensus         1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~   80 (106)
T PF01657_consen    1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANI   80 (106)
T ss_dssp             ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCH
T ss_pred             CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHH
Confidence            67898 3 3455 57888999999999999998664   48999988999999999999999999999999999999999


Q ss_pred             hhhCccCceEEEEcCcceeeeecccc
Q 024450          109 YKLCSKAVAARVQLSGCYLKYEVIGF  134 (267)
Q Consensus       109 ~~~C~~~~~a~i~~d~C~lRYs~~~f  134 (267)
                      ...|+.+++++||++.|+||||+++|
T Consensus        81 ~~~C~~~~g~~v~~~~C~lRY~~~~F  106 (106)
T PF01657_consen   81 SSCCPGSRGGRVWYDSCFLRYENYPF  106 (106)
T ss_dssp             HHHTTSBSSEEEEESSEEEEEESS--
T ss_pred             HHhCCCCceEEEECCCEEEEEECCCC
Confidence            99999999999999999999999987



The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.

>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
3a2e_A108 Crystal Structure Of Ginkbilobin-2, The Novel Antif 4e-07
>pdb|3A2E|A Chain A, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal Protein From Ginkgo Biloba Seeds Length = 108 Back     alignment and structure

Iteration: 1

Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 6/108 (5%) Query: 31 TNLVYRGCAEQKFPNPSEVYTQNLNTLLSSLVSRSSQETFNTTTS----GDEQTSITGLY 86 T V C QK P+ S + +NL +L+ L ++ ++ TS G T+ G Sbjct: 3 TAFVSSACNTQKIPSGSP-FNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAY-GRA 60 Query: 87 QCRGDLTTPECYTCVSKIPDLAYKLCSKAVAARVQLSGCYLKYEVIGF 134 C+ ++ +C C+S + + + +C+ A+ ARVQL C+++YE F Sbjct: 61 TCKQSISQSDCTACLSNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query267
2e79_A108 Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect 2e-24
2e79_A108 Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect 1e-14

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query267
3a2e_A108 Ginkbilobin-2; domain 26 unknown function (DUF26), 99.95
2e79_A108 Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect 99.95
3a2e_A108 Ginkbilobin-2; domain 26 unknown function (DUF26), 99.93
2e79_A108 Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect 99.92
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba} Back     alignment and structure
Probab=99.95  E-value=4.3e-28  Score=188.48  Aligned_cols=104  Identities=24%  Similarity=0.577  Sum_probs=92.5

Q ss_pred             cccccccccCCCcccCCCChHHHHHHHHHHHhHhcCCcC--Ccceeecc-CCCCcEEEEEecCCCCChhchHHHHHHHHH
Q 024450           30 ITNLVYRGCAEQKFPNPSEVYTQNLNTLLSSLVSRSSQE--TFNTTTSG-DEQTSITGLYQCRGDLTTPECYTCVSKIPD  106 (267)
Q Consensus        30 ~~~~~~~~C~~~~~~~~~s~f~~nl~~ll~~L~~~a~~~--~f~~~~~g-~~~~~vygl~~Cr~D~s~~~C~~Cl~~a~~  106 (267)
                      .++++++.|++ ++++++++|++||+.||++|+++++..  +|++...| .++++||||+|||+|+++++|+.||+.|+.
T Consensus         2 ~t~~v~~~Cn~-~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~   80 (108)
T 3a2e_A            2 NTAFVSSACNT-QKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVN   80 (108)
T ss_dssp             CCCEEEEEECS-SBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CcceeeeecCC-CccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHH
Confidence            35678899975 578899999999999999999887643  45666555 456999999999999999999999999999


Q ss_pred             HHhhhCccCceEEEEcCcceeeeecccc
Q 024450          107 LAYKLCSKAVAARVQLSGCYLKYEVIGF  134 (267)
Q Consensus       107 ~~~~~C~~~~~a~i~~d~C~lRYs~~~f  134 (267)
                      ++.+.||++++|+||++.|+||||+++|
T Consensus        81 ~~~~~C~~~~g~~i~~~~C~lRY~~~~F  108 (108)
T 3a2e_A           81 RIFSICNNAIGARVQLVDCFIQYEQRSF  108 (108)
T ss_dssp             THHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred             HHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence            9999999999999999999999999987



>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00