Citrus Sinensis ID: 024450
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 267 | ||||||
| 449468710 | 292 | PREDICTED: cysteine-rich repeat secretor | 0.883 | 0.808 | 0.602 | 2e-82 | |
| 297744209 | 312 | unnamed protein product [Vitis vinifera] | 0.880 | 0.753 | 0.616 | 6e-82 | |
| 225437995 | 291 | PREDICTED: cysteine-rich repeat secretor | 0.880 | 0.807 | 0.616 | 9e-82 | |
| 147863793 | 355 | hypothetical protein VITISV_007000 [Viti | 0.865 | 0.650 | 0.622 | 6e-81 | |
| 449509447 | 310 | PREDICTED: cysteine-rich repeat secretor | 0.794 | 0.683 | 0.633 | 1e-79 | |
| 224070098 | 243 | predicted protein [Populus trichocarpa] | 0.872 | 0.958 | 0.617 | 1e-79 | |
| 356548095 | 265 | PREDICTED: cysteine-rich repeat secretor | 0.835 | 0.841 | 0.596 | 1e-76 | |
| 255571200 | 299 | DUF26 domain-containing protein 2 precur | 0.868 | 0.775 | 0.600 | 6e-76 | |
| 357510165 | 286 | Cysteine-rich repeat secretory protein [ | 0.842 | 0.786 | 0.574 | 2e-71 | |
| 388511127 | 257 | unknown [Medicago truncatula] | 0.838 | 0.871 | 0.578 | 2e-71 |
| >gi|449468710|ref|XP_004152064.1| PREDICTED: cysteine-rich repeat secretory protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 144/239 (60%), Positives = 187/239 (78%), Gaps = 3/239 (1%)
Query: 28 SDITNLVYRGCAEQKFPNPSEVYTQNLNTLLSSLVSRSSQETFNTTTSGDEQTSITGLYQ 87
+D T+L+++GC++QKFP+PS++YTQNL +L S+L+S+SSQ+ F +T+SGD TS+ GL+Q
Sbjct: 27 TDTTSLIFKGCSKQKFPDPSQIYTQNLKSLFSTLISQSSQKPFFSTSSGDGGTSLQGLFQ 86
Query: 88 CRGDLTTPECYTCVSKIPDLAYKLCSKAVAARVQLSGCYLKYEVIGFSQVPETELLYKIC 147
CRGDL+ P+C CVSKIP +A KLC +A+AARVQL+GCYL+YEV GF +V TELL+K+C
Sbjct: 87 CRGDLSLPQCNDCVSKIPSMADKLCGQALAARVQLTGCYLRYEVAGFREVSGTELLFKVC 146
Query: 148 GSTQVTGAAVFEQRRNTAFNMVTNGVKNSVELFYTGTYEHVYILGECEGDIASGNCGDCV 207
GS QV G+ FE+RRNTAF MV NGVKN LFY G+Y VY+LG+CEGD++ G+CG CV
Sbjct: 147 GSIQVAGSG-FEERRNTAFEMVENGVKNGGALFYAGSYRSVYVLGQCEGDLSEGDCGGCV 205
Query: 208 KTATERAKNECDDSISAQIYLNKCFISYSYYPNGVPNPNSSLSSGAQGSIHRRQWQWQL 266
KTA E+ EC DSIS QIYLNKC+ISY+YYPNG+P+ SL + GS H Q L
Sbjct: 206 KTAAEKVNGECGDSISGQIYLNKCYISYNYYPNGIPSI--SLGPFSVGSRHNTQRTVAL 262
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744209|emb|CBI37179.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225437995|ref|XP_002273136.1| PREDICTED: cysteine-rich repeat secretory protein 3 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147863793|emb|CAN79351.1| hypothetical protein VITISV_007000 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449509447|ref|XP_004163591.1| PREDICTED: cysteine-rich repeat secretory protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224070098|ref|XP_002303114.1| predicted protein [Populus trichocarpa] gi|222844840|gb|EEE82387.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356548095|ref|XP_003542439.1| PREDICTED: cysteine-rich repeat secretory protein 3-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|255571200|ref|XP_002526550.1| DUF26 domain-containing protein 2 precursor, putative [Ricinus communis] gi|223534111|gb|EEF35828.1| DUF26 domain-containing protein 2 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|357510165|ref|XP_003625371.1| Cysteine-rich repeat secretory protein [Medicago truncatula] gi|355500386|gb|AES81589.1| Cysteine-rich repeat secretory protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|388511127|gb|AFK43625.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 267 | ||||||
| TAIR|locus:2018314 | 307 | PDLP2 "AT1G04520" [Arabidopsis | 0.902 | 0.785 | 0.528 | 7.2e-68 | |
| TAIR|locus:2051089 | 304 | PDLP3 "AT2G33330" [Arabidopsis | 0.898 | 0.789 | 0.524 | 4.5e-66 | |
| TAIR|locus:2172492 | 303 | PDLP1 "plasmodesmata-located p | 0.887 | 0.782 | 0.478 | 1.7e-59 | |
| TAIR|locus:2151709 | 298 | PDLP7 "plasmodesmata-located p | 0.831 | 0.744 | 0.333 | 2e-31 | |
| TAIR|locus:2101811 | 279 | PDLP8 "AT3G60720" [Arabidopsis | 0.831 | 0.795 | 0.304 | 1.2e-28 | |
| TAIR|locus:2100870 | 319 | PDLP4 "plasmodesmata-located p | 0.715 | 0.598 | 0.339 | 1.9e-28 | |
| TAIR|locus:2033614 | 299 | HWI1 "HOPW1-1-INDUCED GENE1" [ | 0.917 | 0.819 | 0.308 | 2.4e-28 | |
| TAIR|locus:2065450 | 288 | PDLP6 "AT2G01660" [Arabidopsis | 0.816 | 0.756 | 0.304 | 3.5e-27 | |
| TAIR|locus:2166091 | 263 | AT5G48540 "AT5G48540" [Arabido | 0.831 | 0.844 | 0.245 | 5.3e-17 | |
| TAIR|locus:2095662 | 252 | AT3G22060 "AT3G22060" [Arabido | 0.820 | 0.869 | 0.238 | 6.9e-15 |
| TAIR|locus:2018314 PDLP2 "AT1G04520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
Identities = 129/244 (52%), Positives = 174/244 (71%)
Query: 13 ILFTTLVIFVHAKTDSDITNLVYRGCAEQKFPNPSEVYTQNLNTLLSSLVSRSSQETFNT 72
+LF L + V + T ++ T L+Y+GCA Q+F +PS +Y+Q L+ + SLVS+S++ F
Sbjct: 16 LLFPDLNVVVKSAT-TEYTTLIYKGCARQQFSDPSGLYSQALSAMFGSLVSQSTKTRFYK 74
Query: 73 TTSGDEQTSITGLYQCRGDLTTPECYTCVSKIPDLAYKLCSKAVAARVQLSGCYLKYEVI 132
TT+G T+ITGL+QCRGDL+ +CY CVS++P L+ KLC K +A+RVQLSGCYL YEV
Sbjct: 75 TTTGTSTTTITGLFQCRGDLSNHDCYNCVSRLPVLSDKLCGKTIASRVQLSGCYLLYEVS 134
Query: 133 GFSQVPETELLYKICGSTQVTGAAVFEQRRNTAFNMVTNGVKNSVELFYTGTYEHVYILG 192
GFSQ+ E+L+K CG + G FE+RR+TAF ++ NGV + FY TYE VY+LG
Sbjct: 135 GFSQISGMEMLFKTCGKNNIAGTG-FEERRDTAFGVMQNGVVSG-HGFYATTYESVYVLG 192
Query: 193 ECEGDIASGNCGDCVKTATERAKNECDDSISAQIYLNKCFISYSYYPNGVPNPNSSLSSG 252
+CEGD+ +C CVK A E+A+ EC SIS QIYL+KCFI+YSYYPNGVP +SS SS
Sbjct: 193 QCEGDVGDTDCSGCVKNALEKAQVECGSSISGQIYLHKCFIAYSYYPNGVPRRSSSSSSS 252
Query: 253 AQGS 256
+ S
Sbjct: 253 SSSS 256
|
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| TAIR|locus:2051089 PDLP3 "AT2G33330" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2172492 PDLP1 "plasmodesmata-located protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2151709 PDLP7 "plasmodesmata-located protein 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2101811 PDLP8 "AT3G60720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2100870 PDLP4 "plasmodesmata-located protein 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2033614 HWI1 "HOPW1-1-INDUCED GENE1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2065450 PDLP6 "AT2G01660" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2166091 AT5G48540 "AT5G48540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2095662 AT3G22060 "AT3G22060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00028514001 | SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (291 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 267 | |||
| pfam01657 | 106 | pfam01657, Stress-antifung, Salt stress response/a | 7e-18 | |
| pfam01657 | 106 | pfam01657, Stress-antifung, Salt stress response/a | 3e-14 |
| >gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 7e-18
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 42 KFPNPSEVYTQNLNTLLSSLVSRSSQET---FNTTTSGDEQTSITGLYQCRGDLTTPECY 98
+ + + NLN LLSSL S ++ + F TSG ++ GL QCRGDL+ +C
Sbjct: 11 NYTTANSTFESNLNALLSSLSSNAASSSGKGFAAGTSGAAPDTVYGLAQCRGDLSASDCR 70
Query: 99 TCVSKIPDLAYKLCSKAVAARVQLSGCYLKYEVIGF 134
+C++ + C R+ C+L+YE F
Sbjct: 71 SCLATAVSELRRCCPNKKGGRIWYDSCFLRYESYPF 106
|
This domain is often found in association with the kinase domains pfam00069 or pfam07714. In many proteins it is duplicated. It contains six conserved cysteines which are involved in disulphide bridges. It has a role in salt stress response and has antifungal activity. Length = 106 |
| >gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 267 | |||
| PF01657 | 106 | Stress-antifung: Salt stress response/antifungal; | 99.93 | |
| PF01657 | 106 | Stress-antifung: Salt stress response/antifungal; | 99.89 |
| >PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-26 Score=177.36 Aligned_cols=100 Identities=33% Similarity=0.638 Sum_probs=77.1
Q ss_pred ccccC-C-Cccc-CCCChHHHHHHHHHHHhHhcCCc---CCcceeeccCCCCcEEEEEecCCCCChhchHHHHHHHHHHH
Q 024450 35 YRGCA-E-QKFP-NPSEVYTQNLNTLLSSLVSRSSQ---ETFNTTTSGDEQTSITGLYQCRGDLTTPECYTCVSKIPDLA 108 (267)
Q Consensus 35 ~~~C~-~-~~~~-~~~s~f~~nl~~ll~~L~~~a~~---~~f~~~~~g~~~~~vygl~~Cr~D~s~~~C~~Cl~~a~~~~ 108 (267)
|+.|+ + .+++ +++++|++||+.||+.|..+++. .+|+++..|.++++||||+||++|+++.+|..||+.|+.++
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~ 80 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANI 80 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHH
Confidence 67898 3 3455 57888999999999999998664 48999988999999999999999999999999999999999
Q ss_pred hhhCccCceEEEEcCcceeeeecccc
Q 024450 109 YKLCSKAVAARVQLSGCYLKYEVIGF 134 (267)
Q Consensus 109 ~~~C~~~~~a~i~~d~C~lRYs~~~f 134 (267)
...|+.+++++||++.|+||||+++|
T Consensus 81 ~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 81 SSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHhCCCCceEEEECCCEEEEEECCCC
Confidence 99999999999999999999999987
|
The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D. |
| >PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 267 | ||||
| 3a2e_A | 108 | Crystal Structure Of Ginkbilobin-2, The Novel Antif | 4e-07 |
| >pdb|3A2E|A Chain A, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal Protein From Ginkgo Biloba Seeds Length = 108 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 267 | |||
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 2e-24 | |
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 1e-14 |
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 267 | |||
| 3a2e_A | 108 | Ginkbilobin-2; domain 26 unknown function (DUF26), | 99.95 | |
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 99.95 | |
| 3a2e_A | 108 | Ginkbilobin-2; domain 26 unknown function (DUF26), | 99.93 | |
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 99.92 |
| >3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-28 Score=188.48 Aligned_cols=104 Identities=24% Similarity=0.577 Sum_probs=92.5
Q ss_pred cccccccccCCCcccCCCChHHHHHHHHHHHhHhcCCcC--Ccceeecc-CCCCcEEEEEecCCCCChhchHHHHHHHHH
Q 024450 30 ITNLVYRGCAEQKFPNPSEVYTQNLNTLLSSLVSRSSQE--TFNTTTSG-DEQTSITGLYQCRGDLTTPECYTCVSKIPD 106 (267)
Q Consensus 30 ~~~~~~~~C~~~~~~~~~s~f~~nl~~ll~~L~~~a~~~--~f~~~~~g-~~~~~vygl~~Cr~D~s~~~C~~Cl~~a~~ 106 (267)
.++++++.|++ ++++++++|++||+.||++|+++++.. +|++...| .++++||||+|||+|+++++|+.||+.|+.
T Consensus 2 ~t~~v~~~Cn~-~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~ 80 (108)
T 3a2e_A 2 NTAFVSSACNT-QKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVN 80 (108)
T ss_dssp CCCEEEEEECS-SBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CcceeeeecCC-CccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 35678899975 578899999999999999999887643 45666555 456999999999999999999999999999
Q ss_pred HHhhhCccCceEEEEcCcceeeeecccc
Q 024450 107 LAYKLCSKAVAARVQLSGCYLKYEVIGF 134 (267)
Q Consensus 107 ~~~~~C~~~~~a~i~~d~C~lRYs~~~f 134 (267)
++.+.||++++|+||++.|+||||+++|
T Consensus 81 ~~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 81 RIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp THHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 9999999999999999999999999987
|
| >3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00