Citrus Sinensis ID: 024464

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
Protein Sequence
MDQGSYNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAHGNGVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFVSQATREYSRGTSPDWLHMQIGGGFERMT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHcccccccccccccccccccccccccccHcccEccccccccc
Coil and Loop (DISEMBL)
mdqgsynfaeiwqfpvpgsgsmsesggglgqkgahfgqhlsqfgtnrevsgddpvnlehkmahgngvrkrrdvedesakhvstssgngngnrvndsdgkriktsgsrddnhhskaeaepssvkpaeqnsqppeppkqdyihvrarrgqatdshSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNtrmnpgievfppkdftqqtfdtagmpfvsqatreysrgtspdwlhmqigggfermt
Flexible Loop (DISEMBL)
MDQGSYNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFGTNREVSGDDPVNLEHkmahgngvrkrrdvedesakhvstssgngngnrvndsdgkriktsgsrddnhhskaeaepssvkpaeqnsqppepPKQDYIHVRArrgqatdshslaeRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFVSQATreysrgtspdwlhmqigggfermt
Low Complexity Region (SEG)
MDQGSYNFAEIWQFPVPgsgsmsesggglgQKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAHGNGVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFVSQATREYSRGTSPDWLHMQIGGGFERMT
Disordered region (IsUnstruct)
******NFAEIWQF*********************************************************************************************************************************************************MKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFV**************WLH***********
Disordered Region (DISOPRED)
****SYN***I*****************************************************************************************************************************************************REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSMKLE***********************************************************
Disordered Region (DISEMBL)
MDQGSYNFAEIWQFPVPG************QKGAHFGQHLSQFGTNREVSGDDPVNLEHKMA*****************************RVNDSDGKRI*********************************PKQDYIHVR*****************REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFVSQATREYSRGTSPDWLHMQIGGGFERMT
Disordered Region (DISPRO)
***GSYNFAEIWQFPVPGSG*******************************************************************************************************************KQDYIHVRARRGQ****HSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFV**AT****R**S*DWL************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDQGSYNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAHGNGVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFVSQATREYSRGTSPDWLHMQIGGGFERMT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	267	2.2.26 [Sep-21-2011]
Q0JXE7	343	Transcription factor BPE	no	no	0.846	0.658	0.528	3e-56
Q9LV17	281	Transcription factor bHLH	no	no	0.947	0.900	0.470	1e-48
Q9SRT2	456	Transcription factor bHLH	no	no	0.820	0.480	0.433	9e-38
Q9FJL4	498	Transcription factor bHLH	no	no	0.363	0.194	0.762	1e-37
Q9LK48	371	Transcription factor bHLH	no	no	0.674	0.485	0.487	1e-36
Q9CAA9	486	Transcription factor bHLH	no	no	0.737	0.405	0.443	7e-36
Q6NKN9	366	Transcription factor bHLH	no	no	0.385	0.281	0.657	1e-33
Q9C670	390	Transcription factor bHLH	no	no	0.651	0.446	0.457	3e-33
Q8GY61	335	Transcription factor bHLH	no	no	0.745	0.594	0.425	5e-32
Q9ZPW3	337	Transcription factor bHLH	no	no	0.479	0.379	0.556	1e-31

>sp|Q0JXE7|BPE_ARATH Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1

 Score =  218 bits (556), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 141/267 (52%), Positives = 162/267 (60%), Gaps = 41/267 (15%)

Query: 4   GSYNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFGTN--REVSGDDPVNLEHKM 61
           G +N AEIWQFP+ G      S  G   + +  G +  QFG       +  DP  + H +
Sbjct: 11  GPFNLAEIWQFPLNGV-----STAGDSSRRSFVGPN--QFGDADLTTAANGDPARMSHAL 63

Query: 62  AHG-----NGVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAE 116
           +       +G  KRR+ E +SAK VST   +       + + KR K     D+    KAE
Sbjct: 64  SQAVIEGISGAWKRREDESKSAKIVSTIGAS-------EGENKRQKI----DEVCDGKAE 112

Query: 117 AEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVP 176
           AE    +  EQ  Q  EP K DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVP
Sbjct: 113 AESLGTE-TEQKKQQMEPTK-DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVP 170

Query: 177 GCNKVIGKALVLDEIINYIQSLQRQ--FLSMKLEAVNTRMNPGIEVFPPKDFTQ------ 228
           GCNKVIGKALVLDEIINYIQSLQRQ  FLSMKLEAVN+RMNPGIEVFPPK+         
Sbjct: 171 GCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNPGIEVFPPKEVMILMIINS 230

Query: 229 --QTFDTAGMPFVSQATREYSRGTSPD 253
               F T    F+S+    YSRG S D
Sbjct: 231 IFSIFFTKQYMFLSR----YSRGRSLD 253

Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV17|BH079_ARATH Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1

 Score =  193 bits (490), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 129/274 (47%), Positives = 155/274 (56%), Gaps = 21/274 (7%)

Query: 5   SYNFAEIWQFPVPGSGSMSESGGGLG-QKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAH 63
           SY  +EIW FPV        SG  L    G  F +  S+   N++VS  +   +    A 
Sbjct: 18  SYTLSEIWPFPV---NDAVRSGLRLAVNSGRVFTR--SEHSGNKDVSAAEESTVTDLTA- 71

Query: 64  GNGVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSV- 122
           G G RK RD+  E        S + +GN + +S  K+ K  GS   N       E  +  
Sbjct: 72  GWGSRKTRDLNSED-DSSKMVSSSSSGNELKESGDKKRKLCGSESGNGDGSMRPEGETSS 130

Query: 123 -----KPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPG 177
                K  EQ ++P EPPK DYIHVRARRGQATD HSLAERARREKISE+M  LQD++PG
Sbjct: 131 GGGGSKATEQKNKP-EPPK-DYIHVRARRGQATDRHSLAERARREKISEKMTALQDIIPG 188

Query: 178 CNKVIGKALVLDEIINYIQSLQRQ--FLSMKLEAVNT--RMNPGIEVFPPKDFTQQTFDT 233
           CNK+IGKALVLDEIINYIQSLQRQ  FLSMKLE VN+     P I VFP  D      D 
Sbjct: 189 CNKIIGKALVLDEIINYIQSLQRQVEFLSMKLEVVNSGASTGPTIGVFPSGDLGTLPIDV 248

Query: 234 AGMPFVSQATREYSRGTSPDWLHMQIGGGFERMT 267
               +  Q   E +R + P+WLHMQ+ G F R T
Sbjct: 249 HRTIYEQQEANE-TRVSQPEWLHMQVDGNFNRTT 281

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1

 Score =  157 bits (396), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 105/242 (43%), Positives = 135/242 (55%), Gaps = 23/242 (9%)

Query: 4   GSYNFAEIWQFPVPGS-------GSMSESGG--GLGQKGAHFGQHLSQFGT---NREVSG 51
           G+  +A     P PGS         M+E  G  G  ++ A F    S FG+   N   + 
Sbjct: 107 GNSCYATPMSSPPPGSMMETKTTTPMAELSGDPGFAERAARF----SCFGSRSFNSRTNS 162

Query: 52  DDPVNLEHKMAHGNGVRKRRD--VEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSG-SRD 108
             P+N E  +     + +     V    A HV     +G  +R   +  K+   S  S  
Sbjct: 163 PFPINNEPPITTNEKMPRVSSSPVFKPLASHVPAGESSGELSRKRKTKSKQNSPSAVSSS 222

Query: 109 DNHHSKAEAEPSSVKPAEQNSQPPEP--PKQDYIHVRARRGQATDSHSLAERARREKISE 166
                K +++P   K +E+N    +   P +DYIHVRARRGQATDSHSLAER RREKISE
Sbjct: 223 KEIEEKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISE 282

Query: 167 RMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ--FLSMKLEAVNTRMNPGIEVFPPK 224
           RMK+LQDLVPGCNKV GKAL+LDEIINY+QSLQRQ  FLSMKL +VNTR++  ++    K
Sbjct: 283 RMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDALLSK 342

Query: 225 DF 226
           D 
Sbjct: 343 DI 344

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJL4|BH078_ARATH Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1

 Score =  156 bits (395), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/101 (76%), Positives = 87/101 (86%), Gaps = 4/101 (3%)

Query: 128 NSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALV 187
           N++PPEPPK DYIHVRARRGQATDSHSLAER RREKI ERMK+LQDLVPGCNKV GKAL+
Sbjct: 288 NTKPPEPPK-DYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALM 346

Query: 188 LDEIINYIQSLQRQ--FLSMKLEAVN-TRMNPGIEVFPPKD 225
           LDEIINY+QSLQRQ  FLSMKL +VN TR++  ++    KD
Sbjct: 347 LDEIINYVQSLQRQVEFLSMKLSSVNDTRLDFNVDALVSKD 387

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK48|BH077_ARATH Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1

 Score =  153 bits (387), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/201 (48%), Positives = 119/201 (59%), Gaps = 21/201 (10%)

Query: 33  GAHFGQHLSQFGTNREVSGDDPVNLEHK---MAHGNGVRKR-RDVEDESAKHVSTSSGNG 88
           G  F  +  QFG++RE  G  P   E     +   + V  R    +  S K  S  SGNG
Sbjct: 67  GIRFPPYPGQFGSDREF-GSQPTTQESNKSSLLDPDSVSDRVHTTKSNSRKRKSIPSGNG 125

Query: 89  N----GNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSVKPAEQ---------NSQPPEPP 135
                 + +  S+ K    +G       SK +   SS    E+         +++PPE P
Sbjct: 126 KESPASSSLTASNSKVSGENGGSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAP 185

Query: 136 KQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYI 195
           K DYIHVRARRGQATDSHSLAERARREKISERM +LQDLVPGCN++ GKA++LDEIINY+
Sbjct: 186 K-DYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYV 244

Query: 196 QSLQRQ--FLSMKLEAVNTRM 214
           QSLQRQ  FLSMKL  VN RM
Sbjct: 245 QSLQRQVEFLSMKLATVNPRM 265

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1

 Score =  150 bits (380), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 105/237 (44%), Positives = 128/237 (54%), Gaps = 40/237 (16%)

Query: 16  VPGSGSMSE---SGGGLGQKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAHGNGVRKRRD 72
           VPGSG++SE   S GG GQKG             RE S              N  +++R+
Sbjct: 208 VPGSGNVSEDTQSSGGNGQKG-------------RETSS-------------NTKKRKRN 241

Query: 73  VEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSVKPAEQNSQPP 132
            +  S    S  S        N+ D KR        ++  S       S    +Q  Q  
Sbjct: 242 GQKNSEAAQSHRSQQSEEEPDNNGDEKR--------NDEQSPNSPGKKSNSGKQQGKQSS 293

Query: 133 EPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 192
           +PPK  YIHVRARRGQAT+SHSLAER RREKISERMK LQDLVPGCNKV GKA++LDEII
Sbjct: 294 DPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEII 353

Query: 193 NYIQSLQRQ--FLSMKLEAVNTRMNPGIEVFPPKDFTQ-QTFDTAGMPFVSQATREY 246
           NY+QSLQRQ  FLSMKL  VN +M+  +E    KD  Q +   ++  PF    +  Y
Sbjct: 354 NYVQSLQRQVEFLSMKLATVNPQMDFNLEGLLAKDALQLRAGSSSTTPFPPNMSMAY 410

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NKN9|BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1

 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/105 (65%), Positives = 86/105 (81%), Gaps = 2/105 (1%)

Query: 126 EQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKA 185
           +++SQ  E PK++YIH+RARRGQAT+SHSLAER RREKISERM++LQ+LVPGCNK+ GKA
Sbjct: 190 KESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKA 249

Query: 186 LVLDEIINYIQSLQRQ--FLSMKLEAVNTRMNPGIEVFPPKDFTQ 228
           ++LDEIINY+QSLQ+Q  FLSMKL  VN  +N  I+    KD  Q
Sbjct: 250 VMLDEIINYVQSLQQQVEFLSMKLATVNPEINIDIDRILAKDLLQ 294

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C670|BH076_ARATH Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1

 Score =  142 bits (357), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/190 (45%), Positives = 111/190 (58%), Gaps = 16/190 (8%)

Query: 60  KMAHGNGVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDG-------------KRIKTSGS 106
           K+ +G      + V++ S  +VS  S +  GN  +D+               KRI     
Sbjct: 127 KLDNGPLTDASKLVKERSINNVSEDSQSSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCE 186

Query: 107 RDDNHHSKAEAEPSS-VKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKIS 165
            +++   K E  P+S         QP +  K  YIH+RARRGQAT+SHSLAER RREKIS
Sbjct: 187 EEEDKKQKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKIS 246

Query: 166 ERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ--FLSMKLEAVNTRMNPGIEVFPP 223
           ERMK LQDLVPGC+KV GKA++LDEIINY+QSLQ Q  FLSMKL AVN  ++  +E    
Sbjct: 247 ERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVNPVLDFNLESLLA 306

Query: 224 KDFTQQTFDT 233
           KD  Q +  T
Sbjct: 307 KDALQSSAPT 316

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1

 Score =  138 bits (347), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 91/214 (42%), Positives = 121/214 (56%), Gaps = 15/214 (7%)

Query: 14  FPVPGSGSMSES----GGGLGQKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAHGNGVRK 69
           F  P +G  ++S    GG +    +  G +L        V GD  +++  +   G G  K
Sbjct: 33  FDSPLAGFFADSSMITGGEMDSYLSTAGLNLPMMYGETTVEGDSRLSISPETTLGTGNFK 92

Query: 70  RRDVEDESAKHVSTSSGNGNGNRVN-DSDGKRIKTSGSRDDNHHSKAEAEPSSVKPAEQN 128
           +R  + E+ K  +        NR +   +G+  K+  +  +N  +K+  +       E+N
Sbjct: 93  KRKFDTET-KDCNEKKKKMTMNRDDLVEEGEEEKSKITEQNNGSTKSIKKMKHKAKKEEN 151

Query: 129 S-------QPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV 181
           +          E  K DYIHVRARRGQATDSHS+AER RREKISERMK LQDLVPGC+K+
Sbjct: 152 NFSNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKI 211

Query: 182 IGKALVLDEIINYIQSLQRQ--FLSMKLEAVNTR 213
            GKA +LDEIINY+QSLQRQ  FLSMKL  VN R
Sbjct: 212 TGKAGMLDEIINYVQSLQRQIEFLSMKLAIVNPR 245

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPW3|BH064_ARATH Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3

 Score =  136 bits (343), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/133 (55%), Positives = 87/133 (65%), Gaps = 5/133 (3%)

Query: 99  KRIKTSGSRDDNHHSKAE---AEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSL 155
           K+IK     + +   K+     E SS    E +    E  K DYIHVRARRGQATD HSL
Sbjct: 139 KKIKVEAETESSMKGKSNMGNTEASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSL 198

Query: 156 AERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ--FLSMKLEAVNTR 213
           AERARREKIS++MK LQD+VPGCNKV GKA +LDEIINY+Q LQRQ  FLSMKL  +N  
Sbjct: 199 AERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNPE 258

Query: 214 MNPGIEVFPPKDF 226
           +   +E    K F
Sbjct: 259 LELAVEDVSVKQF 271

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
255558300	265	DNA binding protein, putative [Ricinus c	0.955	0.962	0.715	3e-96
449458041	298	PREDICTED: transcription factor BPE-like	0.977	0.875	0.68	5e-93
225424835	277	PREDICTED: transcription factor BPE-like	0.962	0.927	0.676	1e-92
147774847	302	hypothetical protein VITISV_004761 [Viti	0.936	0.827	0.675	9e-89
356498105	264	PREDICTED: transcription factor BPE-like	0.902	0.912	0.639	2e-83
296086467	208	unnamed protein product [Vitis vinifera]	0.741	0.951	0.770	5e-83
357516593	278	Transcription factor bHLH79 [Medicago tr	0.947	0.910	0.669	1e-81
225456604	284	PREDICTED: transcription factor bHLH79 i	0.962	0.904	0.641	2e-81
388504966	278	unknown [Medicago truncatula]	0.947	0.910	0.665	9e-81
356500809	255	PREDICTED: transcription factor BPE-like	0.883	0.925	0.626	5e-80

>gi|255558300|ref|XP_002520177.1| DNA binding protein, putative [Ricinus communis] gi|223540669|gb|EEF42232.1| DNA binding protein, putative [Ricinus communis]

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 194/271 (71%), Positives = 215/271 (79%), Gaps = 16/271 (5%)

Query: 1   MDQGSYNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFGTNREVSGDDPVNLEHK 60
           M+ GSYN AEIW FPV        +G G GQ G + G       +NR+VSG+D + L+ +
Sbjct: 7   MNDGSYNLAEIWPFPV--------NGNGRGQFGQNLGAQF--LDSNRDVSGNDLMILDRR 56

Query: 61  MAHGNGVRKRRD--VEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAE 118
            A G G  KRR   VED+S K VS+S  NGNGN VNDSD KR+KTSG+ D+NH SK+EAE
Sbjct: 57  GARGGGGAKRRHDVVEDDSTKVVSSS--NGNGNAVNDSDAKRLKTSGNLDENHDSKSEAE 114

Query: 119 PSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGC 178
           PSS K  EQN+QPPE PKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGC
Sbjct: 115 PSSGKHVEQNTQPPELPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGC 174

Query: 179 NKVIGKALVLDEIINYIQSLQRQ--FLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGM 236
           NKVIGKALVLDEIINYIQSLQRQ  FLSMKLEAVNTRM PGIE FP KDF QQTFD AGM
Sbjct: 175 NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMTPGIEAFPSKDFGQQTFDAAGM 234

Query: 237 PFVSQATREYSRGTSPDWLHMQIGGGFERMT 267
            F SQATR+Y+RGTSP+WLHMQ+GGGFER +
Sbjct: 235 AFGSQATRDYNRGTSPEWLHMQVGGGFERTS 265

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458041|ref|XP_004146756.1| PREDICTED: transcription factor BPE-like [Cucumis sativus]

 Score =  346 bits (888), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 187/275 (68%), Positives = 213/275 (77%), Gaps = 14/275 (5%)

Query: 6   YNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFGT----NREVSGDD--PVNLEH 59
           +N +EIW FP+ G  S+ +SG  L  + AH   +L+ FG     N EVS  D  P+ L+ 
Sbjct: 25  FNLSEIWHFPIHGGTSVEDSGPALALRMAHLAHNLTHFGDIAIGNPEVSPTDSLPLQLQQ 84

Query: 60  KMAHGNGV-RKRRDVEDESAKHVSTSSGNGNGNRVN---DSDGKRIKTSGSRDDNHHSKA 115
           ++ HG+GV +KRRD + +S K  STS+GN      +   DS GKR+KT+  RDDNH SK 
Sbjct: 85  RLPHGHGVSKKRRDSDQDSPKVSSTSNGNNANANSSAGNDSGGKRVKTAACRDDNHESKT 144

Query: 116 EAEPSSVKPAEQNSQP-PEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDL 174
           EAEP S K  EQNSQP PE PKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDL
Sbjct: 145 EAEPRSGK-TEQNSQPTPEQPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDL 203

Query: 175 VPGCNKVIGKALVLDEIINYIQSLQRQ--FLSMKLEAVNTRMNPGIEVFPPKDFTQQTFD 232
           VPGCNKVIGKALVLDEIINYIQSLQRQ  FLSMKLEAVN+R+ PGIEVFPPKD+ QQTFD
Sbjct: 204 VPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIGPGIEVFPPKDYGQQTFD 263

Query: 233 TAGMPFVSQATREYSRGTSPDWLHMQIGGGFERMT 267
           T G+ F SQATREYSRG+SP+WLHMQIGGGFER T
Sbjct: 264 TTGVAFGSQATREYSRGSSPEWLHMQIGGGFERTT 298

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424835|ref|XP_002272776.1| PREDICTED: transcription factor BPE-like [Vitis vinifera]

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 188/278 (67%), Positives = 208/278 (74%), Gaps = 21/278 (7%)

Query: 1   MDQG-SYNFAEIWQFPVPGSGSMSES------GGGLGQKGAHFGQHLSQFGTNREVSG-- 51
           ++QG SY+ AEIW +P+ G G+          GG LGQ   HFG +    G NRE SG  
Sbjct: 7   INQGASYHLAEIWNYPISGGGAGEAGGGLELRGGHLGQNLGHFGDNAGVGGANREASGGG 66

Query: 52  DDPVNLEHKMAHGNGVRKRRD--VEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDD 109
           DDP+ LE      +G RKRRD   EDE  K VSTS G   GN  ND DGKR+KTSGSRD+
Sbjct: 67  DDPMVLER-----SGGRKRRDAATEDEGGKAVSTSGG---GNVANDCDGKRLKTSGSRDE 118

Query: 110 NHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMK 169
           N  SK E E SS KP EQN Q  +PPKQD+IHVRARRGQATDSHSLAERARREKISERMK
Sbjct: 119 NRDSKTEVETSSGKPVEQNPQSADPPKQDFIHVRARRGQATDSHSLAERARREKISERMK 178

Query: 170 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ--FLSMKLEAVNTRMNPGIEVFPPKDFT 227
           ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ  FLSMKLEAVN+RMN GIE FP KDF 
Sbjct: 179 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNSGIEGFPSKDFG 238

Query: 228 QQTFDTAGMPFVSQATREYSRGTSPDWLHMQIGGGFER 265
           QQTFD AG+ + SQATREY R +SP+WLHMQ+GGGF+R
Sbjct: 239 QQTFDAAGVAYSSQATREYGRASSPEWLHMQVGGGFDR 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774847|emb|CAN69076.1| hypothetical protein VITISV_004761 [Vitis vinifera]

 Score =  332 bits (851), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 183/271 (67%), Positives = 201/271 (74%), Gaps = 21/271 (7%)

Query: 1   MDQG-SYNFAEIWQFPVPGSGSMSES------GGGLGQKGAHFGQHLSQFGTNREVSG-- 51
           ++QG SY+ AEIW +P+ G G+          GG LGQ   HFG +    G NRE SG  
Sbjct: 7   INQGASYHLAEIWNYPISGGGAGEAGGGLELRGGHLGQNLGHFGDNAGVGGANREASGGG 66

Query: 52  DDPVNLEHKMAHGNGVRKRRD--VEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDD 109
           DDP+ LE      +G RKRRD   EDE  K VSTS G   GN  ND DGKR+KTSGSRD+
Sbjct: 67  DDPMVLER-----SGGRKRRDAATEDEGGKAVSTSGG---GNVANDCDGKRLKTSGSRDE 118

Query: 110 NHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMK 169
           N  SK E E SS KP EQN Q  +PPKQD+IHVRARRGQATDSHSLAERARREKISERMK
Sbjct: 119 NRDSKTEVETSSGKPVEQNPQSADPPKQDFIHVRARRGQATDSHSLAERARREKISERMK 178

Query: 170 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ--FLSMKLEAVNTRMNPGIEVFPPKDFT 227
           ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ  FLSMKLEAVN+RMN GIE FP KDF 
Sbjct: 179 ILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNSGIEGFPSKDFG 238

Query: 228 QQTFDTAGMPFVSQATREYSRGTSPDWLHMQ 258
           QQTFD AG+ + SQATREY R +SP+WLHMQ
Sbjct: 239 QQTFDAAGVAYSSQATREYGRASSPEWLHMQ 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498105|ref|XP_003517894.1| PREDICTED: transcription factor BPE-like [Glycine max]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 174/272 (63%), Positives = 194/272 (71%), Gaps = 31/272 (11%)

Query: 5   SYNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFG---TNREVSGDDPVNLEHKM 61
           SY+ +EIWQFP P +         LG +  HF    + F    T   V G DP ++  K 
Sbjct: 15  SYHLSEIWQFPPPNAPDE------LGLRRPHFTHGFADFAPDPTRDAVPGRDPASIAQK- 67

Query: 62  AHGNGVRKRRDV---EDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAE 118
                  KRRD    E+ESAK  ST++    G  V D  GKR+KTS S       K E E
Sbjct: 68  -------KRRDASAEEEESAKGASTTNAVNEGGGVGD--GKRVKTSES------GKGEGE 112

Query: 119 PSSVKPAEQNSQPP-EPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPG 177
            SS K AEQ+ +PP EPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQD+VPG
Sbjct: 113 TSSGKLAEQSGKPPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDIVPG 172

Query: 178 CNKVIGKALVLDEIINYIQSLQRQ--FLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAG 235
           CNKVIGKALVLDEIINYIQSLQRQ  FLSMKLEAVN+R+ P IEVFPPKDF QQTFDT G
Sbjct: 173 CNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLAPRIEVFPPKDFDQQTFDTTG 232

Query: 236 MPFVSQATREYSRGTSPDWLHMQIGGGFERMT 267
           MPF SQATREYSRG+SP+WLHMQ+GGG+ER T
Sbjct: 233 MPFASQATREYSRGSSPEWLHMQVGGGYERAT 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086467|emb|CBI32056.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (802), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 158/205 (77%), Positives = 170/205 (82%), Gaps = 7/205 (3%)

Query: 65  NGVRKRRD--VEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSV 122
           +G RKRRD   EDE  K VSTS   G GN  ND DGKR+KTSGSRD+N  SK E E SS 
Sbjct: 6   SGGRKRRDAATEDEGGKAVSTS---GGGNVANDCDGKRLKTSGSRDENRDSKTEVETSSG 62

Query: 123 KPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVI 182
           KP EQN Q  +PPKQD+IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVI
Sbjct: 63  KPVEQNPQSADPPKQDFIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVI 122

Query: 183 GKALVLDEIINYIQSLQRQ--FLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFVS 240
           GKALVLDEIINYIQSLQRQ  FLSMKLEAVN+RMN GIE FP KDF QQTFD AG+ + S
Sbjct: 123 GKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNSGIEGFPSKDFGQQTFDAAGVAYSS 182

Query: 241 QATREYSRGTSPDWLHMQIGGGFER 265
           QATREY R +SP+WLHMQ+GGGF+R
Sbjct: 183 QATREYGRASSPEWLHMQVGGGFDR 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516593|ref|XP_003628585.1| Transcription factor bHLH79 [Medicago truncatula] gi|355522607|gb|AET03061.1| Transcription factor bHLH79 [Medicago truncatula]

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 178/266 (66%), Positives = 199/266 (74%), Gaps = 13/266 (4%)

Query: 6   YNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAHGN 65
           ++ AEIWQFP     +++  GGGLG +   FG  L Q+G        D   L H    G 
Sbjct: 22  FSLAEIWQFPA----AINGGGGGLGLRRPQFGNGLGQYGEFGPGLNRDGNGLNHA---GG 74

Query: 66  GVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSVKPA 125
           G +KRRD ED+SAK VSTS  NG  N VNDSDGKR K SG++++    K E E SS K A
Sbjct: 75  GGKKRRDSEDDSAKCVSTS--NGGANAVNDSDGKRTKASGNKNEGGDGKVEGEASSGKHA 132

Query: 126 EQNSQPPEPPKQD--YIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIG 183
           EQ+S+PP        YIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIG
Sbjct: 133 EQSSKPPPSDPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIG 192

Query: 184 KALVLDEIINYIQSLQRQ--FLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFVSQ 241
           KALVLDEIINYIQSLQRQ  FLSMKLEAVN+R+N GIE FPPKD+ QQTFD AGMPFVSQ
Sbjct: 193 KALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNTGIEAFPPKDYGQQTFDLAGMPFVSQ 252

Query: 242 ATREYSRGTSPDWLHMQIGGGFERMT 267
           ATRE SRG+SP+WLHMQ+GGGFER T
Sbjct: 253 ATREPSRGSSPEWLHMQVGGGFERTT 278

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456604|ref|XP_002267633.1| PREDICTED: transcription factor bHLH79 isoform 1 [Vitis vinifera]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 175/273 (64%), Positives = 204/273 (74%), Gaps = 16/273 (5%)

Query: 5   SYNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFG---TNREVSGDDPVNLEHKM 61
           +Y+ AEIW FPV  + ++ E   GLG + A+FGQ + QF     NR+VS D+    E   
Sbjct: 18  AYSLAEIWPFPVNSASAIGEPTAGLGLRIANFGQIMGQFADSSANRDVSVDESTVTEQSG 77

Query: 62  AHGNGVRKRRDV--EDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEP 119
           + G   RKRRDV  EDES+K VSTSSG+G    +N S+GKR+K S + D+N  SKAE E 
Sbjct: 78  SRGG-GRKRRDVSSEDESSKIVSTSSGSG----MNASNGKRMKISRTPDENGGSKAELEA 132

Query: 120 SSV---KPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVP 176
           SSV   KPAE+ S+P E  KQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVP
Sbjct: 133 SSVAGEKPAEE-SKPAEQSKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVP 191

Query: 177 GCNKVIGKALVLDEIINYIQSLQRQ--FLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTA 234
           GCNKVIGKALVLDEIINYIQSLQRQ  FLSMKLEAVN+RMN  +E FP KD   QTFD A
Sbjct: 192 GCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNHTVEGFPLKDLGVQTFDAA 251

Query: 235 GMPFVSQATREYSRGTSPDWLHMQIGGGFERMT 267
            M + SQATREY++G+ P+WLHMQ+GG  ER +
Sbjct: 252 AMIYGSQATREYAQGSQPEWLHMQVGGSIERAS 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504966|gb|AFK40549.1| unknown [Medicago truncatula]

 Score =  305 bits (782), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 177/266 (66%), Positives = 197/266 (74%), Gaps = 13/266 (4%)

Query: 6   YNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAHGN 65
           ++ AEIWQFP     +++  GGGLG +   FG  L Q+G        D   L H    G 
Sbjct: 22  FSLAEIWQFPA----AINGGGGGLGLRRPQFGNGLGQYGEFGPGLNRDGNGLNHA---GG 74

Query: 66  GVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSSVKPA 125
           G +KRRD ED+SAK VSTS  NG  N VNDSDGKR K SG++++    K E E SS K A
Sbjct: 75  GGKKRRDSEDDSAKCVSTS--NGGANAVNDSDGKRTKASGNKNEGGDGKVEGEASSGKHA 132

Query: 126 EQNSQPPEPPKQD--YIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIG 183
           EQ+S+PP        YIHVRARRGQATDSH LAERARREKISERMKILQDLVPGCNKVIG
Sbjct: 133 EQSSKPPPSDPPKQDYIHVRARRGQATDSHGLAERARREKISERMKILQDLVPGCNKVIG 192

Query: 184 KALVLDEIINYIQSLQRQ--FLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFVSQ 241
           KALVLDEIINYIQSLQRQ  FLSMKLEAVN+R+N GIE FPPKD+ QQTFD AGMPFVSQ
Sbjct: 193 KALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNTGIEAFPPKDYGQQTFDLAGMPFVSQ 252

Query: 242 ATREYSRGTSPDWLHMQIGGGFERMT 267
           ATRE SRG SP+WLHMQ+GGGFER T
Sbjct: 253 ATREPSRGFSPEWLHMQVGGGFERTT 278

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500809|ref|XP_003519223.1| PREDICTED: transcription factor BPE-like [Glycine max]

 Score =  303 bits (776), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 168/268 (62%), Positives = 189/268 (70%), Gaps = 32/268 (11%)

Query: 5   SYNFAEIWQFPVPGSGSMSESGGGLGQKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAHG 64
           SY+ +EIW FP P +         LG + AHF        T   V G D  ++  K    
Sbjct: 15  SYHLSEIWHFPPPNAPD------ALGLRRAHFAPG----PTRHAVPGRDLASIAPK---- 60

Query: 65  NGVRKRRDVEDESAKHVSTSSGNGNGNRVNDS--DGKRIKTSGSRDDNHHSKAEAEPSSV 122
               KRR  E+E    V ++ G    N V++   DGKR+KTS S       K E E  S 
Sbjct: 61  ----KRRQAEEE---EVESTRGASTTNAVDEGCGDGKRVKTSES------GKGEGESCSG 107

Query: 123 KPAEQNSQPP-EPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV 181
           KPA+Q+ +PP EPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV
Sbjct: 108 KPAKQSGKPPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV 167

Query: 182 IGKALVLDEIINYIQSLQRQ--FLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFV 239
           IGKALVLDEIINYIQSLQRQ  FLSMKLEAVN+R+ PGIEVFPPKDF QQTFDT GMPF 
Sbjct: 168 IGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIAPGIEVFPPKDFDQQTFDTTGMPFA 227

Query: 240 SQATREYSRGTSPDWLHMQIGGGFERMT 267
           SQATR+YSRG+SP+WLHMQ+G GFER T
Sbjct: 228 SQATRDYSRGSSPEWLHMQVGDGFERAT 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
UNIPROTKB|Q84T08	265	OSJNBa0087C10.10 "BHLH transcr	0.764	0.769	0.658	1.3e-66
UNIPROTKB|Q69WS3	268	OJ1118_E12.15 "Putative bHLH p	0.764	0.761	0.582	3.6e-57
TAIR|locus:2172209	281	AT5G62610 "AT5G62610" [Arabido	0.943	0.896	0.490	1.5e-51
TAIR|locus:2202867	343	BPEp "AT1G59640" [Arabidopsis	0.764	0.594	0.554	3.6e-50
UNIPROTKB|Q84QW1	405	OJ1191_A10.109 "BHLH transcrip	0.745	0.491	0.475	1.1e-37
TAIR|locus:2152551	498	AT5G48560 "AT5G48560" [Arabido	0.602	0.323	0.526	1.9e-37
TAIR|locus:2079676	456	AT3G07340 "AT3G07340" [Arabido	0.696	0.407	0.472	8e-37
TAIR|locus:2095198	371	AT3G23690 "AT3G23690" [Arabido	0.674	0.485	0.492	2.7e-36
UNIPROTKB|Q5N802	481	P0004D12.24 "BHLH transcriptio	0.632	0.351	0.492	1.2e-35
TAIR|locus:2205420	486	AT1G68920 [Arabidopsis thalian	0.737	0.405	0.441	1.9e-35

UNIPROTKB|Q84T08 OSJNBa0087C10.10 "BHLH transcription factor, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 141/214 (65%), Positives = 164/214 (76%)

Query:    64 GNGVRKRRD---VEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPS 120
             G G R++R+   +ED+S++ VSTS G G G  + DS+ KR K S S  DN   + EAE  
Sbjct:    52 GAGRRRQREAPALEDDSSRIVSTSGGGGGGQDLTDSEAKRFKASKSSGDNSSLRTEAETD 111

Query:   121 S---VKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPG 177
             S    K  +QN  PPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPG
Sbjct:   112 SRNASKSGDQNPPPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPG 171

Query:   178 CNKVIGKALVLDEIINYIQSLQRQ--FLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDTA- 234
             CNKVIGKA VLDEIINYIQ+LQRQ  FLSMKLEAVN  +N GIE FPPKDF  Q ++TA 
Sbjct:   172 CNKVIGKASVLDEIINYIQALQRQVEFLSMKLEAVNAHVNNGIEAFPPKDFGAQVYNTAP 231

Query:   235 GMPFVSQATREYSRGTSP-DWLHMQIGGGFERMT 267
             G+ F  Q  REY++G++P +WLHMQIGG +ER+T
Sbjct:   232 GLTFDPQTPREYAQGSTPSEWLHMQIGGTYERVT 265

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q69WS3 OJ1118_E12.15 "Putative bHLH protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 134/230 (58%), Positives = 162/230 (70%)

Query:    64 GNGVRK-RRDV---EDESAKHVSTSS---GNGNGNRVNDS-DGKRIKTSGSRDDNHHSKA 115
             G+G R+ R D    +D+ +K VSTS+   G G G + +D+ + KR+K   S D N   + 
Sbjct:    39 GSGRRRPRSDAGPEDDDLSKVVSTSAASGGGGGGGQDSDAPEAKRLKPMKSSDKNDSLRT 98

Query:   116 EA---EPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQ 172
             EA     +S K A++N+ PPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQ
Sbjct:    99 EAGTDSGNSSKAADKNATPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQ 158

Query:   173 DLVPGCNKVIGKALVLDEIINYIQSLQRQ--------------FLSMKLEAVNTRMNPGI 218
             DLVPGCNKVIGKA VLDEIINYIQSLQ Q              FLSMKLEAVN+ M  GI
Sbjct:   159 DLVPGCNKVIGKASVLDEIINYIQSLQHQVEFMFKYLIELFLQFLSMKLEAVNSHMINGI 218

Query:   219 EVFPPKDFTQQTFDTA-GMPFVSQATREYSRGTSPDWLHMQIGGGFERMT 267
               FP KDF  Q ++TA G+ F  Q TRE+++G++ +WLHMQIG  +ER+T
Sbjct:   219 VAFPSKDFGAQPYNTAAGLTFDPQTTREFAQGSTSEWLHMQIGNAYERVT 268

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2172209 AT5G62610 "AT5G62610" [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 135/275 (49%), Positives = 164/275 (59%)

Query:     5 SYNFAEIWQFPVPXXXXXXXXXXXXXQKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAHG 64
             SY  +EIW FPV                G  F +  S+   N++VS  +   +    A G
Sbjct:    18 SYTLSEIWPFPV--NDAVRSGLRLAVNSGRVFTR--SEHSGNKDVSAAEESTVTDLTA-G 72

Query:    65 NGVRKRRDV--EDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHS--KAEAEPS 120
              G RK RD+  ED+S+K VS+SS   +GN + +S  K+ K  GS   N     + E E S
Sbjct:    73 WGSRKTRDLNSEDDSSKMVSSSS---SGNELKESGDKKRKLCGSESGNGDGSMRPEGETS 129

Query:   121 S----VKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVP 176
             S     K  EQ ++P EPPK DYIHVRARRGQATD HSLAERARREKISE+M  LQD++P
Sbjct:   130 SGGGGSKATEQKNKP-EPPK-DYIHVRARRGQATDRHSLAERARREKISEKMTALQDIIP 187

Query:   177 GCNKVIGKALVLDEIINYIQSLQRQ--FLSMKLEAVNTRMNPG--IEVFPPKDFTQQTFD 232
             GCNK+IGKALVLDEIINYIQSLQRQ  FLSMKLE VN+  + G  I VFP  D      D
Sbjct:   188 GCNKIIGKALVLDEIINYIQSLQRQVEFLSMKLEVVNSGASTGPTIGVFPSGDLGTLPID 247

Query:   233 TAGMPFVSQATREYSRGTSPDWLHMQIGGGFERMT 267
                  +  Q   E +R + P+WLHMQ+ G F R T
Sbjct:   248 VHRTIYEQQEANE-TRVSQPEWLHMQVDGNFNRTT 281

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2202867 BPEp "AT1G59640" [Arabidopsis thaliana (taxid:3702)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 127/229 (55%), Positives = 144/229 (62%)

Query:     4 GSYNFAEIWQFPVPXXXXXXXXXXXXXQKGAHFGQHLSQFGTNREVSGDDPVNLEHKMAH 63
             G +N AEIWQFP+                   FG   +   T    +  DP  + H ++ 
Sbjct:    11 GPFNLAEIWQFPLNGVSTAGDSSRRSFVGPNQFGD--ADLTT---AANGDPARMSHALSQ 65

Query:    64 G-----NGVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAE 118
                   +G  KRR+ E +SAK VST   +       + + KR K     D+    KAEAE
Sbjct:    66 AVIEGISGAWKRREDESKSAKIVSTIGAS-------EGENKRQKI----DEVCDGKAEAE 114

Query:   119 PSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGC 178
                 +  EQ  Q  EP K DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGC
Sbjct:   115 SLGTE-TEQKKQQMEPTK-DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGC 172

Query:   179 NKVIGKALVLDEIINYIQSLQRQ--FLSMKLEAVNTRMNPGIEVFPPKD 225
             NKVIGKALVLDEIINYIQSLQRQ  FLSMKLEAVN+RMNPGIEVFPPK+
Sbjct:   173 NKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNPGIEVFPPKE 221

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048446 "petal morphogenesis" evidence=IMP

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|Q84QW1 OJ1191_A10.109 "BHLH transcription factor(GBOF-1)-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 106/223 (47%), Positives = 133/223 (59%)

Query:    44 GTNREVSG-DDPVNLEHKMAHGNGVRKRRDVEDESAKHVSTSSGNGNGNRVND---SDGK 99
             G +RE S   DP +   K A  N  +KR+     +A   + + G G    V +   SDGK
Sbjct:    96 GGSREASSVSDPASSAMKDAAANA-KKRKS----TAAAAAAAKGKGKEPPVGEEKESDGK 150

Query:   100 RIKT-SGSRDDNHHSKAE--AEPSSVKPAE---------QNSQPPEPPKQDYIHVRARRG 147
             R KT +G ++ +   KAE     SSV+            +N++P EPPK DY+HVRARRG
Sbjct:   151 RCKTGNGEKESSVKPKAEQAGSDSSVEDGGGGGQKQGKGKNAKPVEPPK-DYVHVRARRG 209

Query:   148 QATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ--FLSM 205
             QATDSHSLAER RRE+IS+RMK+LQDLVPGCNKVIGKAL+LDEIINY+QSLQRQ  FLSM
Sbjct:   210 QATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQRQVEFLSM 269

Query:   206 KLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMPFVSQATREYSR 248
             KL  VN      +     KD  Q    +A   F  +++    R
Sbjct:   270 KLATVNPLDFSNLPTLLQKDMFQACGPSASSVFSLESSNSAFR 312

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2152551 AT5G48560 "AT5G48560" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 91/173 (52%), Positives = 116/173 (67%)

Query:    64 GNGVRKRRDVEDESAKH--VSTSSGNGNGNRVNDSDGKRIKTSGSRDDNHHSKAEAEPSS 121
             G   RKR+ V    +K   +ST+S + + ++  + +G +  +  S +     + E E   
Sbjct:   216 GEFSRKRKSVPKGKSKENPISTASPSPSFSKTAEKNGGKGGSKSSEEKGGKRRREEEDDE 275

Query:   122 VKPAE------QNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLV 175
              +  E       N++PPEPPK DYIHVRARRGQATDSHSLAER RREKI ERMK+LQDLV
Sbjct:   276 EEEGEGEGNKSNNTKPPEPPK-DYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLV 334

Query:   176 PGCNKVIGKALVLDEIINYIQSLQRQ--FLSMKLEAVN-TRMNPGIEVFPPKD 225
             PGCNKV GKAL+LDEIINY+QSLQRQ  FLSMKL +VN TR++  ++    KD
Sbjct:   335 PGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNDTRLDFNVDALVSKD 387

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2079676 AT3G07340 "AT3G07340" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 93/197 (47%), Positives = 117/197 (59%)

Query:    36 FGQHLSQFGTNRE--VSGDDPVNLEHKMAHGNGVRKRRDVEDESAKHVSTSSGNGNGNRV 93
             FG       TN    ++ + P+    KM   +       V    A HV     +G  +R 
Sbjct:   151 FGSRSFNSRTNSPFPINNEPPITTNEKMPRVSS----SPVFKPLASHVPAGESSGELSRK 206

Query:    94 NDSDGKRIKTSG-SRDDNHHSKAEAEPSSVKPAEQNSQPPEP--PKQDYIHVRARRGQAT 150
               +  K+   S  S       K +++P   K +E+N    +   P +DYIHVRARRGQAT
Sbjct:   207 RKTKSKQNSPSAVSSSKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQAT 266

Query:   151 DSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ--FLSMKLE 208
             DSHSLAER RREKISERMK+LQDLVPGCNKV GKAL+LDEIINY+QSLQRQ  FLSMKL 
Sbjct:   267 DSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLS 326

Query:   209 AVNTRMNPGIEVFPPKD 225
             +VNTR++  ++    KD
Sbjct:   327 SVNTRLDFNMDALLSKD 343

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2095198 AT3G23690 "AT3G23690" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 99/201 (49%), Positives = 119/201 (59%)

Query:    33 GAHFGQHLSQFGTNREVSGDDPVNLEHK---MAHGNGVRKR-RDVEDESAKHVSTSSGNG 88
             G  F  +  QFG++RE  G  P   E     +   + V  R    +  S K  S  SGNG
Sbjct:    67 GIRFPPYPGQFGSDREF-GSQPTTQESNKSSLLDPDSVSDRVHTTKSNSRKRKSIPSGNG 125

Query:    89 NGNRVNDS-DGKRIKTSGSRDDNH---HSKAEAEPSSVKPAEQ---------NSQPPEPP 135
               +  + S      K SG    +     SK +   SS    E+         +++PPE P
Sbjct:   126 KESPASSSLTASNSKVSGENGGSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAP 185

Query:   136 KQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYI 195
             K DYIHVRARRGQATDSHSLAERARREKISERM +LQDLVPGCN++ GKA++LDEIINY+
Sbjct:   186 K-DYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYV 244

Query:   196 QSLQRQ--FLSMKLEAVNTRM 214
             QSLQRQ  FLSMKL  VN RM
Sbjct:   245 QSLQRQVEFLSMKLATVNPRM 265

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q5N802 P0004D12.24 "BHLH transcription factor" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 94/191 (49%), Positives = 118/191 (61%)

Query:    42 QFGTNREVSG-DDPV----NLEHKMAHGNGVRKRRDVEDESAKHVSTSSGNGNGNRVNDS 96
             + G  R+ S   DP      +  K A     RKR+     S K     S         DS
Sbjct:   167 ELGNTRDESSVSDPAPGGAEIPPKGASDGNARKRK----ASGKGKGKDSPMSTSAAKEDS 222

Query:    97 DGKRIKT---SGSRDDNHHSKAEAEPSSVKPA-------EQNSQPPEPPKQDYIHVRARR 146
              GKR K+   S +  + +  K +A  S+ +         + +S+PPEPPK DYIHVRARR
Sbjct:   223 SGKRCKSTEESNAAAEENSGKGKAAQSNSENGGGKKQGKDSSSKPPEPPK-DYIHVRARR 281

Query:   147 GQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ--FLS 204
             G+ATDSHSLAER RREKIS+RMK+LQDLVPGCNKV+GKA++LDEIINY+QSLQRQ  FLS
Sbjct:   282 GEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQSLQRQVEFLS 341

Query:   205 MKLEAVNTRMN 215
             MKL  VN +++
Sbjct:   342 MKLATVNPQLD 352

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2205420 AT1G68920 [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 90/204 (44%), Positives = 117/204 (57%)

Query:    49 VSGDDPVNLEHKMAHGNGVRKRRDVEDESAKHVSTSSGNGNGNRVNDSDGKRIKTSGSRD 108
             V G   V+ + + + GNG +K R+    + K       N    + + S     +   + D
Sbjct:   208 VPGSGNVSEDTQSSGGNG-QKGRETSSNTKKRKRNGQKNSEAAQSHRSQQSEEEPDNNGD 266

Query:   109 DNHHSKAEAEPSSVKP---AEQNSQPPEPPKQDYIHVRARRGQATDSHSLAERARREKIS 165
             +  + +        K     +Q  Q  +PPK  YIHVRARRGQAT+SHSLAER RREKIS
Sbjct:   267 EKRNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKIS 326

Query:   166 ERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ--FLSMKLEAVNTRMNPGIEVFPP 223
             ERMK LQDLVPGCNKV GKA++LDEIINY+QSLQRQ  FLSMKL  VN +M+  +E    
Sbjct:   327 ERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFNLEGLLA 386

Query:   224 KDFTQ-QTFDTAGMPFVSQATREY 246
             KD  Q +   ++  PF    +  Y
Sbjct:   387 KDALQLRAGSSSTTPFPPNMSMAY 410

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00000052001 SubName- Full=Chromosome chr17 scaffold_101, whole genome shotgun sequence; (284 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	267
smart00353	53	smart00353, HLH, helix loop helix domain	6e-11
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	5e-09
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	1e-08

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 56.1 bits (136), Expect = 6e-11
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 154 SLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQ 201
           +  ER RR KI+E    L+ L+P    NK + KA +L   I YI+SLQ +
Sbjct: 1   NARERRRRRKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEE 50

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 51.1 bits (123), Expect = 5e-09
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 146 RGQATDSHSLAERARREKISERMKILQDLVPGCNKV--IGKALVLDEIINYIQSLQRQ 201
           R    ++H+L ER RRE+I++    L+ L+P       + KA +L + ++YI+SLQ  
Sbjct: 1   RKSRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQEL 58

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 49.8 bits (120), Expect = 1e-08
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 152 SHSLAERARREKISERMKILQDLVPGCNKV-IGKALVLDEIINYIQSLQ 199
           +H+  ER RR++I++  + L++L+P      + KA +L   I YI+ LQ
Sbjct: 4   AHNERERRRRDRINDAFEELRELLPTPPNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	267
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.4
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.36
smart00353	53	HLH helix loop helix domain.	99.33
KOG1318	411	consensus Helix loop helix transcription factor EB	99.21
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	99.07
KOG4304	250	consensus Transcriptional repressors of the hairy/	98.38
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	98.2
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	98.2
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	98.04
KOG3582	856	consensus Mlx interactors and related transcriptio	97.34
KOG0561	373	consensus bHLH transcription factor [Transcription	97.19
PLN03217	93	transcription factor ATBS1; Provisional	97.04
KOG3960	284	consensus Myogenic helix-loop-helix transcription	97.03
KOG4029	228	consensus Transcription factor HAND2/Transcription	97.0
KOG3910	632	consensus Helix loop helix transcription factor [T	96.38
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	91.2
KOG3558	768	consensus Hypoxia-inducible factor 1/Neuronal PAS	82.48
KOG3898	254	consensus Transcription factor NeuroD and related	81.28

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.40  E-value=3.4e-13  Score=95.50  Aligned_cols=53  Identities=38%  Similarity=0.657  Sum_probs=48.0

Q ss_pred             CCcccHHHHHHHHHHHHHHHHhhccCCCC--CcCCChhhHHHHHHHHHHHHHHHH
Q 024464          150 TDSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQF  202 (267)
Q Consensus       150 ~~~Hs~aERkRRekIner~~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~qv  202 (267)
                      ...|+..||+||++||+.|..|++|||.+  ....+|+.||+.||+||+.|+.++
T Consensus         5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~   59 (60)
T cd00083           5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL   59 (60)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            34799999999999999999999999999  344599999999999999999874

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.36  E-value=1.1e-12  Score=92.99  Aligned_cols=48  Identities=38%  Similarity=0.749  Sum_probs=44.4

Q ss_pred             cccHHHHHHHHHHHHHHHHhhccCCCC----CcCCChhhHHHHHHHHHHHHH
Q 024464          152 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ  199 (267)
Q Consensus       152 ~Hs~aERkRRekIner~~~Lr~LVP~~----~K~~dKAsIL~eAI~YIk~LQ  199 (267)
                      .|+..||+||++||+.|..|+.|||.+    ....+|++||+.||+||+.||
T Consensus         4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            599999999999999999999999987    234699999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>smart00353 HLH helix loop helix domain

Probab=99.33  E-value=3.6e-12  Score=88.88  Aligned_cols=50  Identities=42%  Similarity=0.587  Sum_probs=44.1

Q ss_pred             cHHHHHHHHHHHHHHHHhhccCCCC--CcCCChhhHHHHHHHHHHHHHHHHH
Q 024464          154 SLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQFL  203 (267)
Q Consensus       154 s~aERkRRekIner~~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~qv~  203 (267)
                      +..||+||++||+.|..|+.|||.+  ....+|++||..||+||+.|+.+++
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999964  2334999999999999999998864

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=99.21  E-value=2e-11  Score=118.63  Aligned_cols=61  Identities=36%  Similarity=0.598  Sum_probs=52.0

Q ss_pred             cccccCCCCCCcccHHHHHHHHHHHHHHHHhhccCCCCCc---CCChhhHHHHHHHHHHHHHHH
Q 024464          141 HVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK---VIGKALVLDEIINYIQSLQRQ  201 (267)
Q Consensus       141 ~~RaRR~~a~~~Hs~aERkRRekIner~~~Lr~LVP~~~K---~~dKAsIL~eAI~YIk~LQ~q  201 (267)
                      ..-.|.+++++.|+.+||+||++||++|+.|..|||.|+.   ...|..||..+++||+.||+.
T Consensus       225 ~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~  288 (411)
T KOG1318|consen  225 TALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQT  288 (411)
T ss_pred             chhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHH
Confidence            3334555667889999999999999999999999999942   237999999999999999875

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=99.07  E-value=9.7e-11  Score=104.48  Aligned_cols=63  Identities=32%  Similarity=0.611  Sum_probs=54.5

Q ss_pred             cccHHHHHHHHHHHHHHHHhhccCCCCCc------CCChhhHHHHHHHHHHHHHHH-------HHHHHHHHHhCCC
Q 024464          152 SHSLAERARREKISERMKILQDLVPGCNK------VIGKALVLDEIINYIQSLQRQ-------FLSMKLEAVNTRM  214 (267)
Q Consensus       152 ~Hs~aERkRRekIner~~~Lr~LVP~~~K------~~dKAsIL~eAI~YIk~LQ~q-------v~~Lk~E~~~~~~  214 (267)
                      .|..+||+||+-|+..+..|++|||.|..      +..||.||.++|+||.+|.++       +.+|..++..++|
T Consensus        65 aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~i  140 (229)
T KOG1319|consen   65 AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKI  140 (229)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999998842      247999999999999999876       6677777777764

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=98.38  E-value=1.5e-07  Score=86.73  Aligned_cols=50  Identities=34%  Similarity=0.529  Sum_probs=44.9

Q ss_pred             cccHHHHHHHHHHHHHHHHhhccCCCCCc-------CCChhhHHHHHHHHHHHHHHH
Q 024464          152 SHSLAERARREKISERMKILQDLVPGCNK-------VIGKALVLDEIINYIQSLQRQ  201 (267)
Q Consensus       152 ~Hs~aERkRRekIner~~~Lr~LVP~~~K-------~~dKAsIL~eAI~YIk~LQ~q  201 (267)
                      .|-+.||+||++||+.+..|++|||.+-+       +.+||.||+-|++|++.||..
T Consensus        35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~   91 (250)
T KOG4304|consen   35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRS   91 (250)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcc
Confidence            58899999999999999999999997633       248999999999999999886

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=98.20  E-value=1.7e-06  Score=91.33  Aligned_cols=62  Identities=34%  Similarity=0.564  Sum_probs=53.1

Q ss_pred             CCCCcccHHHHHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024464          148 QATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSMKLEA  209 (267)
Q Consensus       148 ~a~~~Hs~aERkRRekIner~~~Lr~LVP~~~K~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~  209 (267)
                      ..+.+||.+|++-|..||++|..|+++||+..-+..|..+|..||+||++||...+.++++.
T Consensus       275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~  336 (953)
T KOG2588|consen  275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLEN  336 (953)
T ss_pred             cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhh
Confidence            45789999999999999999999999999985545899999999999999998744444433

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=98.20  E-value=1.5e-06  Score=90.88  Aligned_cols=52  Identities=21%  Similarity=0.382  Sum_probs=47.6

Q ss_pred             CCcccHHHHHHHHHHHHHHHHhhccCCCCC---cCCChhhHHHHHHHHHHHHHHH
Q 024464          150 TDSHSLAERARREKISERMKILQDLVPGCN---KVIGKALVLDEIINYIQSLQRQ  201 (267)
Q Consensus       150 ~~~Hs~aERkRRekIner~~~Lr~LVP~~~---K~~dKAsIL~eAI~YIk~LQ~q  201 (267)
                      ..+|+.+||+||+++|.-|.+|.+|||.|.   .++||-+||.+||.+|+.+...
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            357999999999999999999999999996   5569999999999999999773

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=98.04  E-value=9.8e-06  Score=74.25  Aligned_cols=52  Identities=31%  Similarity=0.434  Sum_probs=44.9

Q ss_pred             CCcccHHHHHHHHHHHHHHHHhhccCCCCCcCC--ChhhHHHHHHHHHHHHHHH
Q 024464          150 TDSHSLAERARREKISERMKILQDLVPGCNKVI--GKALVLDEIINYIQSLQRQ  201 (267)
Q Consensus       150 ~~~Hs~aERkRRekIner~~~Lr~LVP~~~K~~--dKAsIL~eAI~YIk~LQ~q  201 (267)
                      ...|+..||+||..|+++|..|+.+||......  ..++||++|++||+.|+.+
T Consensus        60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~  113 (232)
T KOG2483|consen   60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERK  113 (232)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhH
Confidence            457999999999999999999999999874322  2589999999999999775

>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]

Probab=97.34  E-value=2e-05  Score=81.47  Aligned_cols=91  Identities=22%  Similarity=0.250  Sum_probs=76.9

Q ss_pred             CCCcccHHHHHHHHHHHHHHHHhhccCCCCCcC----CChhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccCCCc
Q 024464          149 ATDSHSLAERARREKISERMKILQDLVPGCNKV----IGKALVLDEIINYIQSLQRQFLSMKLEAVNTRMNPGIEVFPPK  224 (267)
Q Consensus       149 a~~~Hs~aERkRRekIner~~~Lr~LVP~~~K~----~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~~~~~~~ie~~~~~  224 (267)
                      ....|+.+|++||++|.-.|..|..++.+...+    +.++.-|+++++||..+|++...+.+|...++  .+|++++..
T Consensus       651 r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr--~~~s~~~A~  728 (856)
T KOG3582|consen  651 RPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLR--KEISELNAV  728 (856)
T ss_pred             CcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhh--hhhHHHHHH
Confidence            457899999999999999999999999876443    35677799999999999999888888877766  667777777


Q ss_pred             ccc-cccCCCCCCccccc
Q 024464          225 DFT-QQTFDTAGMPFVSQ  241 (267)
Q Consensus       225 ~~~-q~~~~~~G~p~~~q  241 (267)
                      +.. +|+.+++|+|.+..
T Consensus       729 ~~~~~q~p~aT~vp~~r~  746 (856)
T KOG3582|consen  729 ISACQQPPPATGVPGTRL  746 (856)
T ss_pred             HHHhhcCCCccCCcchhh
Confidence            644 89999999999988

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=97.19  E-value=0.00033  Score=67.00  Aligned_cols=49  Identities=29%  Similarity=0.468  Sum_probs=44.5

Q ss_pred             cccHHHHHHHHHHHHHHHHhhccCCCC--CcCCChhhHHHHHHHHHHHHHHH
Q 024464          152 SHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQ  201 (267)
Q Consensus       152 ~Hs~aERkRRekIner~~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~q  201 (267)
                      .-|..||+|=.-||-.|..|+.|+|.-  .|+ +||.||+.+.+||..|..+
T Consensus        63 IANsNERRRMQSINAGFqsLr~LlPr~eGEKL-SKAAILQQTa~yI~~Le~~  113 (373)
T KOG0561|consen   63 IANSNERRRMQSINAGFQSLRALLPRKEGEKL-SKAAILQQTADYIHQLEGH  113 (373)
T ss_pred             hhcchHHHHHHhhhHHHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHHhc
Confidence            578899999999999999999999964  455 9999999999999999876

>PLN03217 transcription factor ATBS1; Provisional

Probab=97.04  E-value=0.0017  Score=52.06  Aligned_cols=53  Identities=25%  Similarity=0.382  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHhhccCCCCCc-----CCChhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024464          161 REKISERMKILQDLVPGCNK-----VIGKALVLDEIINYIQSLQRQFLSMKLEAVNTR  213 (267)
Q Consensus       161 RekIner~~~Lr~LVP~~~K-----~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~~~  213 (267)
                      -+.|++-+..|+.|+|....     +..-+-||+||..||+.|+++|..|.+.+..+.
T Consensus        19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL   76 (93)
T PLN03217         19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELL   76 (93)
T ss_pred             HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999997521     125567999999999999999988887766653

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=97.03  E-value=0.0017  Score=60.79  Aligned_cols=55  Identities=25%  Similarity=0.376  Sum_probs=46.2

Q ss_pred             cccHHHHHHHHHHHHHHHHhhc-cCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 024464          152 SHSLAERARREKISERMKILQD-LVPGCNKVIGKALVLDEIINYIQSLQRQFLSMK  206 (267)
Q Consensus       152 ~Hs~aERkRRekIner~~~Lr~-LVP~~~K~~dKAsIL~eAI~YIk~LQ~qv~~Lk  206 (267)
                      +-.+-||+|=.|+|+.|.+|+. -+++-+....|.-||..||+||..||.-++++-
T Consensus       121 AATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~  176 (284)
T KOG3960|consen  121 AATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQD  176 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3567899999999999999975 456667767899999999999999998766544

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=97.00  E-value=0.00069  Score=60.84  Aligned_cols=52  Identities=23%  Similarity=0.346  Sum_probs=46.0

Q ss_pred             cccHHHHHHHHHHHHHHHHhhccCCCC---CcCCChhhHHHHHHHHHHHHHHHHH
Q 024464          152 SHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQFL  203 (267)
Q Consensus       152 ~Hs~aERkRRekIner~~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~LQ~qv~  203 (267)
                      .++..||.|=..+|..|..|+.+||..   .|+..|.-+|.-||.||++|++-++
T Consensus       112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~  166 (228)
T KOG4029|consen  112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLA  166 (228)
T ss_pred             hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhc
Confidence            577779999999999999999999963   4566999999999999999987654

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=96.38  E-value=0.0055  Score=62.02  Aligned_cols=54  Identities=26%  Similarity=0.254  Sum_probs=45.6

Q ss_pred             CcccHHHHHHHHHHHHHHHHhhccCCC---CCcCCChhhHHHHHHHHHHHHHHHHHH
Q 024464          151 DSHSLAERARREKISERMKILQDLVPG---CNKVIGKALVLDEIINYIQSLQRQFLS  204 (267)
Q Consensus       151 ~~Hs~aERkRRekIner~~~Lr~LVP~---~~K~~dKAsIL~eAI~YIk~LQ~qv~~  204 (267)
                      ...+.-||-|=..||+.|++|-.+.--   ..|..-|-.||..||.-|-.|+|||.+
T Consensus       528 ~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE  584 (632)
T KOG3910|consen  528 MANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE  584 (632)
T ss_pred             hhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence            468899999999999999999988753   234446899999999999999999764

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=91.20  E-value=0.11  Score=45.72  Aligned_cols=49  Identities=24%  Similarity=0.405  Sum_probs=43.4

Q ss_pred             cccHHHHHHHHHHHHHHHHhhccCCCC--CcCCChhhHHHHHHHHHHHHHHH
Q 024464          152 SHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQ  201 (267)
Q Consensus       152 ~Hs~aERkRRekIner~~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~q  201 (267)
                      .|++-||+|-..+|+.|.+|+.++|..  .|. +|.-.|+-|--||-+|=+-
T Consensus        81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdkl-SkiqtLklA~ryidfl~~v  131 (173)
T KOG4447|consen   81 MANVRERQRTQSLNEAFAALRKIIPTLPSDKL-SKIQTLKLAARYIDFLYQV  131 (173)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhhcCCCCcccc-ccccchhhcccCCchhhhc
Confidence            599999999999999999999999976  454 8888999999999999544

>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]

Probab=82.48  E-value=1  Score=47.71  Aligned_cols=45  Identities=29%  Similarity=0.359  Sum_probs=37.2

Q ss_pred             ccHHHHHHHHHHHHHHHHhhccCCCC---CcCCChhhHHHHHHHHHHH
Q 024464          153 HSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQS  197 (267)
Q Consensus       153 Hs~aERkRRekIner~~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~  197 (267)
                      ---|-|.||.|=|+-|.+|..+||--   .-..|||+|+.-||-|++-
T Consensus        50 SRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl   97 (768)
T KOG3558|consen   50 SRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL   97 (768)
T ss_pred             hhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence            34578999999999999999999932   2224999999999999864

>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]

Probab=81.28  E-value=4.1  Score=37.89  Aligned_cols=49  Identities=24%  Similarity=0.408  Sum_probs=41.3

Q ss_pred             cccHHHHHHHHHHHHHHHHhhccCCCC---CcCCChhhHHHHHHHHHHHHHHH
Q 024464          152 SHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQ  201 (267)
Q Consensus       152 ~Hs~aERkRRekIner~~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~LQ~q  201 (267)
                      .=+.-||.|=-.+|+-|+.|+.+||..   .|+ .|.-.|.-+=+||..|++-
T Consensus        75 kaNaRER~RMH~LNdAld~LReviP~~~~~~kl-skIetl~~a~~yi~als~~  126 (254)
T KOG3898|consen   75 KANARERTRMHDLNDALDALREVIPHGLHPPKL-SKIETLRLAANYIAALSEV  126 (254)
T ss_pred             cccchhhccccchhHHHHHhHhhccCcCCCCCC-CcchhHHhhhcchhhhccc
Confidence            356679999999999999999999953   344 8999999999999999754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	267
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	2e-18
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	2e-09
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	6e-09
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	4e-08
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	8e-08
1a0a_A	63	BHLH, protein (phosphate system positive regulator	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 76.3 bits (188), Expect = 2e-18
 Identities = 21/64 (32%), Positives = 36/64 (56%)

Query: 145 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLS 204
            RG+   +H+  E+  R  I++++  L+DLV G    + K+ VL + I+YI+ LQ     
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 205 MKLE 208
           +K E
Sbjct: 62  LKQE 65

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 51.9 bits (125), Expect = 2e-09
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 151 DSHSLAERARREKISERMKILQDLVPGCNKVIG-----KALVLDEIINYIQSLQRQ 201
             H+  ER RR+KI+  +  L  ++P  +         K  +L +  +YIQ L++ 
Sbjct: 7   AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS 62

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 151 DSHSLAERARREKISERMKILQDLVPGCNKV-IGKALVLDEIINYIQSLQRQFLSMKLE 208
             H+  ER RR+ I +    L+D VP        +A +LD+   YIQ ++R+  + + +
Sbjct: 4   AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQD 62

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 48.5 bits (116), Expect = 4e-08
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 151 DSHSLAERARREKISERMKILQDLVPGCNKV-IGKALVLDEIINYIQSLQRQFLSMKLE 208
             H+  ER RR+ I +    L+D VP        +A +LD+   YIQ ++R+  + + +
Sbjct: 14  AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQD 72

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 152 SHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQFLSMKLE 208
           +H++ ER RR ++      L+D +P    N+   K ++L +   YI S+Q +   +  E
Sbjct: 9   THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISE 67

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63

 Score = 38.6 bits (90), Expect = 9e-05
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 152 SHSLAERARREKISERMKILQDLVPGCNK------VIGKALVLDEIINYIQSLQRQ 201
           SH  AE+ARR +++  +  L  L+P   K         KA  ++    YI+ LQ+ 
Sbjct: 5   SHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQN 60

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 26/150 (17%), Positives = 57/150 (38%), Gaps = 39/150 (26%)

Query: 125 AEQNSQPPEPPKQDYIHVRARRGQATDSHSLAER--ARREKISERMKILQDLVPGCNKVI 182
             +  QP     + YI  R R     D+   A+   +R +   +  + L +L P  N +I
Sbjct: 99  KTEQRQP-SMMTRMYIEQRDR--LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 183 ------GK-ALVLDEIINYIQSLQRQF------LSMK-----------LEAVNTRMNPGI 218
                 GK  + LD  ++Y   +Q +       L++K           L+ +  +++P  
Sbjct: 156 DGVLGSGKTWVALDVCLSY--KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP-- 211

Query: 219 EVFPPKDFTQQTFDTAGMPFVSQATREYSR 248
                 ++T ++  ++ +     + +   R
Sbjct: 212 ------NWTSRSDHSSNIKLRIHSIQAELR 235

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	267
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.68
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.66
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.56
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.56
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.54
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.51
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.51
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.51
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.48
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.37
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.37
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.03
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.99
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.97
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.9
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.87
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.57
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	97.99

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.68  E-value=5.3e-17  Score=132.22  Aligned_cols=74  Identities=32%  Similarity=0.426  Sum_probs=51.8

Q ss_pred             ccccccccCCCCCCcccHHHHHHHHHHHHHHHHhhccCCCCCc---CCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024464          138 DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK---VIGKALVLDEIINYIQSLQRQFLSMKLEAVN  211 (267)
Q Consensus       138 ~~i~~RaRR~~a~~~Hs~aERkRRekIner~~~Lr~LVP~~~K---~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~  211 (267)
                      +..+..+++.+.+++|+++||+||++||++|.+|++|||+|.+   +++|++||++||+||++||++++.|+.+...
T Consensus        16 ~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~   92 (118)
T 4ati_A           16 SEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR   92 (118)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             chHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456778888889999999999999999999999999999853   3589999999999999999999988765443

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.66  E-value=3.3e-17  Score=125.54  Aligned_cols=64  Identities=31%  Similarity=0.473  Sum_probs=57.8

Q ss_pred             CCcccHHHHHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024464          150 TDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNTR  213 (267)
Q Consensus       150 ~~~Hs~aERkRRekIner~~~Lr~LVP~~~K~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~~~  213 (267)
                      ..+|+.+||+||++||++|.+|++|||+++.++||++||++||+||++||.+++.|+.+...++
T Consensus         7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~   70 (82)
T 1am9_A            7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3479999999999999999999999999855569999999999999999999998888877654

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.56  E-value=1.1e-15  Score=111.62  Aligned_cols=55  Identities=27%  Similarity=0.428  Sum_probs=49.0

Q ss_pred             CCCCcccHHHHHHHHHHHHHHHHhhccCCCCCc-----CCChhhHHHHHHHHHHHHHHHH
Q 024464          148 QATDSHSLAERARREKISERMKILQDLVPGCNK-----VIGKALVLDEIINYIQSLQRQF  202 (267)
Q Consensus       148 ~a~~~Hs~aERkRRekIner~~~Lr~LVP~~~K-----~~dKAsIL~eAI~YIk~LQ~qv  202 (267)
                      ....+|+.+||+||++||+.|..|++|||.|..     .++|++||++||+||+.||++.
T Consensus         4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~   63 (65)
T 1an4_A            4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            345689999999999999999999999999862     3599999999999999998763

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.56  E-value=6.6e-16  Score=113.53  Aligned_cols=53  Identities=32%  Similarity=0.453  Sum_probs=47.3

Q ss_pred             CCcccHHHHHHHHHHHHHHHHhhccCCCCCc------CCChhhHHHHHHHHHHHHHHHH
Q 024464          150 TDSHSLAERARREKISERMKILQDLVPGCNK------VIGKALVLDEIINYIQSLQRQF  202 (267)
Q Consensus       150 ~~~Hs~aERkRRekIner~~~Lr~LVP~~~K------~~dKAsIL~eAI~YIk~LQ~qv  202 (267)
                      .++|+++||+||++||..|..|+.|||.+.+      ..+||+||+.||+||+.||+++
T Consensus         3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~   61 (63)
T 1a0a_A            3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999997633      3479999999999999999875

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.54  E-value=3.2e-15  Score=112.86  Aligned_cols=53  Identities=23%  Similarity=0.410  Sum_probs=48.5

Q ss_pred             CcccHHHHHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHH
Q 024464          151 DSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFL  203 (267)
Q Consensus       151 ~~Hs~aERkRRekIner~~~Lr~LVP~~~K~~dKAsIL~eAI~YIk~LQ~qv~  203 (267)
                      .+|+.+||+||++||++|..|++|||++..++||++||++||+||+.||.++.
T Consensus        10 ~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~   62 (71)
T 4h10_B           10 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITA   62 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhh
Confidence            57999999999999999999999999875445999999999999999999854

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.51  E-value=1.1e-14  Score=110.43  Aligned_cols=61  Identities=30%  Similarity=0.479  Sum_probs=55.8

Q ss_pred             CcccHHHHHHHHHHHHHHHHhhccCCCC--CcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 024464          151 DSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNT  212 (267)
Q Consensus       151 ~~Hs~aERkRRekIner~~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~~  212 (267)
                      ..|+..||+||.+||+.|..|++|||.+  .| .+|+.||..||+||+.||++++.|+.+...+
T Consensus        14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L   76 (80)
T 1hlo_A           14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDL   76 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999987  35 5999999999999999999999998887654

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.51  E-value=1.6e-15  Score=114.66  Aligned_cols=51  Identities=33%  Similarity=0.557  Sum_probs=46.1

Q ss_pred             CCCcccHHHHHHHHHHHHHHHHhhccCCCC----CcCCChhhHHHHHHHHHHHHHH
Q 024464          149 ATDSHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQR  200 (267)
Q Consensus       149 a~~~Hs~aERkRRekIner~~~Lr~LVP~~----~K~~dKAsIL~eAI~YIk~LQ~  200 (267)
                      ...+|+.+||+||++||+.|.+|+.|||.|    .|+ |||+||+.||+||+.||.
T Consensus         9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A            9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence            345899999999999999999999999987    454 999999999999999963

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.51  E-value=1.9e-14  Score=109.55  Aligned_cols=61  Identities=30%  Similarity=0.479  Sum_probs=53.9

Q ss_pred             CcccHHHHHHHHHHHHHHHHhhccCCCC--CcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 024464          151 DSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNT  212 (267)
Q Consensus       151 ~~Hs~aERkRRekIner~~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~~  212 (267)
                      .+|+..||+||++||+.|..|+++||.+  .| ++|++||..||+||+.||++++.|+.+...+
T Consensus         4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L   66 (83)
T 1nkp_B            4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDL   66 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3699999999999999999999999986  45 5999999999999999999877777666554

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.48  E-value=4.2e-14  Score=109.85  Aligned_cols=58  Identities=26%  Similarity=0.410  Sum_probs=50.4

Q ss_pred             cccHHHHHHHHHHHHHHHHhhccCCCCC--cCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024464          152 SHSLAERARREKISERMKILQDLVPGCN--KVIGKALVLDEIINYIQSLQRQFLSMKLEA  209 (267)
Q Consensus       152 ~Hs~aERkRRekIner~~~Lr~LVP~~~--K~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~  209 (267)
                      .|+..||+||++||++|..|+++||.+.  .+.+|++||.+||+||++||.+.+.+..+.
T Consensus         9 ~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~   68 (88)
T 1nkp_A            9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE   68 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999999863  335999999999999999999866554443

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.37  E-value=7.5e-13  Score=101.34  Aligned_cols=61  Identities=18%  Similarity=0.133  Sum_probs=53.2

Q ss_pred             cccHHHHHHHHHHHHHHHHhhccCCCCC--cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 024464          152 SHSLAERARREKISERMKILQDLVPGCN--KVIGKALVLDEIINYIQSLQRQFLSMKLEAVNT  212 (267)
Q Consensus       152 ~Hs~aERkRRekIner~~~Lr~LVP~~~--K~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~~  212 (267)
                      .|+..||+||..||+.|..|+++||.+.  .+.+|+.||.+||+||+.||++.+.|..+...+
T Consensus         4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L   66 (80)
T 1nlw_A            4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL   66 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999999762  234899999999999999999987777666554

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.37  E-value=3.3e-13  Score=102.68  Aligned_cols=55  Identities=27%  Similarity=0.373  Sum_probs=47.3

Q ss_pred             CcccHHHHHHHHHHHHHHHHhhccCCCC---CcCCChhhHHHHHHHHHHHHHHHHHHH
Q 024464          151 DSHSLAERARREKISERMKILQDLVPGC---NKVIGKALVLDEIINYIQSLQRQFLSM  205 (267)
Q Consensus       151 ~~Hs~aERkRRekIner~~~Lr~LVP~~---~K~~dKAsIL~eAI~YIk~LQ~qv~~L  205 (267)
                      ..|+..||+||++||+.|..|+.+||.+   .|..+|+.||..||+||++||++++++
T Consensus         7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~   64 (76)
T 3u5v_A            7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRER   64 (76)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999953   343368999999999999999998854

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.03  E-value=3.4e-10  Score=84.46  Aligned_cols=51  Identities=27%  Similarity=0.429  Sum_probs=46.1

Q ss_pred             cccHHHHHHHHHHHHHHHHhhccCCCC-CcCCChhhHHHHHHHHHHHHHHHH
Q 024464          152 SHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQF  202 (267)
Q Consensus       152 ~Hs~aERkRRekIner~~~Lr~LVP~~-~K~~dKAsIL~eAI~YIk~LQ~qv  202 (267)
                      .|+..||+|+..||+.|..|+++||.. +++.+|+.||..||+||..||+.+
T Consensus        15 ~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L   66 (68)
T 1mdy_A           15 AATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999975 344599999999999999998753

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.99  E-value=5.3e-10  Score=81.45  Aligned_cols=51  Identities=24%  Similarity=0.318  Sum_probs=46.1

Q ss_pred             cccHHHHHHHHHHHHHHHHhhccCCCC--CcCCChhhHHHHHHHHHHHHHHHH
Q 024464          152 SHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQF  202 (267)
Q Consensus       152 ~Hs~aERkRRekIner~~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~qv  202 (267)
                      .|+.-||+|+..||+.|..|+.+||..  +++.+|..+|..||+||..||+.+
T Consensus         5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L   57 (60)
T 2ql2_B            5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL   57 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHH
Confidence            488999999999999999999999976  345699999999999999998764

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.97  E-value=4.5e-10  Score=103.05  Aligned_cols=53  Identities=23%  Similarity=0.439  Sum_probs=41.3

Q ss_pred             CCCcccHHHHHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHH
Q 024464          149 ATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ  201 (267)
Q Consensus       149 a~~~Hs~aERkRRekIner~~~Lr~LVP~~~K~~dKAsIL~eAI~YIk~LQ~q  201 (267)
                      ...+|+.+||+||++||..|..|+.|||....++||++||..||+||+.|+..
T Consensus        12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~   64 (361)
T 4f3l_A           12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET   64 (361)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence            34579999999999999999999999995443459999999999999999754

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.90  E-value=2.3e-09  Score=83.21  Aligned_cols=53  Identities=30%  Similarity=0.392  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHhhccCCCCCc---CCChhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 024464          160 RREKISERMKILQDLVPGCNK---VIGKALVLDEIINYIQSLQRQFLSMKLEAVNT  212 (267)
Q Consensus       160 RRekIner~~~Lr~LVP~~~K---~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~~  212 (267)
                      -|++||++|++|..|||.++.   ..+|++||.++|+||++||++++.|+.+..+.
T Consensus         3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~   58 (83)
T 4ath_A            3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQ   58 (83)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            389999999999999998743   24899999999999999999988777666554

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.87  E-value=6.4e-10  Score=103.48  Aligned_cols=52  Identities=31%  Similarity=0.478  Sum_probs=46.5

Q ss_pred             CCCCcccHHHHHHHHHHHHHHHHhhccCCC----CCcCCChhhHHHHHHHHHHHHHH
Q 024464          148 QATDSHSLAERARREKISERMKILQDLVPG----CNKVIGKALVLDEIINYIQSLQR  200 (267)
Q Consensus       148 ~a~~~Hs~aERkRRekIner~~~Lr~LVP~----~~K~~dKAsIL~eAI~YIk~LQ~  200 (267)
                      +++++|+.+||+||++||+.|..|+.|||.    ..|+ ||++||..||.||+.|+.
T Consensus        12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~   67 (387)
T 4f3l_B           12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG   67 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHC
T ss_pred             hhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhc
Confidence            345689999999999999999999999994    4565 999999999999999974

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.57  E-value=1.7e-08  Score=75.75  Aligned_cols=46  Identities=24%  Similarity=0.417  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCC--CcCCChhhHHHHHHHHHHHHHH
Q 024464          155 LAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQR  200 (267)
Q Consensus       155 ~aERkRRekIner~~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~  200 (267)
                      --||+|...||+.|..|+.+||..  +++.+|.-+|..||+||..||.
T Consensus        20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            457888899999999999999976  3456999999999999999984

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=97.99  E-value=1.2e-05  Score=63.92  Aligned_cols=47  Identities=28%  Similarity=0.397  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHhhccCCCC--CcCCChhhHHHHHHHHHHHHHHHHH
Q 024464          157 ERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSLQRQFL  203 (267)
Q Consensus       157 ERkRRekIner~~~Lr~LVP~~--~K~~dKAsIL~eAI~YIk~LQ~qv~  203 (267)
                      ||.|=..||+.|..|+.+||..  +++.+|.-+|.-||+||..||+.+.
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~   81 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD   81 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence            5778888999999999999976  4456999999999999999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	267
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	1e-14
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	2e-13
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	2e-12
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	7e-12
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	1e-11
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	3e-11
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	1e-10
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	1e-09

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (158), Expect = 1e-14
 Identities = 16/54 (29%), Positives = 33/54 (61%)

Query: 161 REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNTRM 214
           R  I++++  L+DLV G +  + K+ VL + I+YI+ LQ+    ++ E +  ++
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKL 54

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (150), Expect = 2e-13
 Identities = 21/64 (32%), Positives = 36/64 (56%)

Query: 145 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLS 204
            RG+   +H+  E+  R  I++++  L+DLV G    + K+ VL + I+YI+ LQ     
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Query: 205 MKLE 208
           +K E
Sbjct: 62  LKQE 65

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.1 bits (143), Expect = 2e-12
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 151 DSHSLAERARREKISERMKILQDLVPGCNKVIG------KALVLDEIINYIQSLQRQ 201
           +SH  AE+ARR +++  +  L  L+P   K         KA  ++    YI+ LQ+ 
Sbjct: 4   ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQN 60

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (140), Expect = 7e-12
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 141 HVRARRGQATDSHSLAERARREKISERMKILQDLVPGC--NKVIGKALVLDEIINYIQSL 198
           H+  +R     +H++ ER RR ++      L+D +P    N+   K ++L +   YI S+
Sbjct: 2   HMNVKR----RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSV 57

Query: 199 QRQFLSMKLE 208
           Q +   +  E
Sbjct: 58  QAEEQKLISE 67

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.8 bits (137), Expect = 1e-11
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 152 SHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQ 201
           + ++ ER R  K++E  + L+       N+ + K  +L   I YI+ LQ  
Sbjct: 15  AATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQAL 65

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (134), Expect = 3e-11
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 151 DSHSLAERARREKISERMKILQDLVPGCNKVIG-----KALVLDEIINYIQSLQRQ 201
             H+  ER RR+KI+  +  L  ++P  +         K  +L +  +YIQ L++ 
Sbjct: 7   AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS 62

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 1e-10
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 152 SHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQFLSMKLE 208
            H+  ER RR+ I +    L+D VP    +   +A +LD+   YIQ ++R+  + + +
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQD 62

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (124), Expect = 1e-09
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 152 SHSLAERARREKISERMKILQDLVPGCNKV--IGKALVLDEIINYIQSLQRQFLSMKLE 208
           +H+  E+ RR  +   ++ L+ LVP            +L +   +I+ L+        +
Sbjct: 4   THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQ 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	267
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.48
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.47
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.44
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.42

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.6e-15  Score=113.28  Aligned_cols=62  Identities=31%  Similarity=0.464  Sum_probs=56.1

Q ss_pred             CcccHHHHHHHHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 024464          151 DSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNT  212 (267)
Q Consensus       151 ~~Hs~aERkRRekIner~~~Lr~LVP~~~K~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~~  212 (267)
                      .+|+.+||+||++||+.|..|++|||++...++|++||.+||+||+.|+.+++.|..+...+
T Consensus         8 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~l   69 (80)
T d1am9a_           8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL   69 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999987666999999999999999999988887766554

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.8e-14  Score=105.78  Aligned_cols=62  Identities=18%  Similarity=0.133  Sum_probs=53.4

Q ss_pred             CcccHHHHHHHHHHHHHHHHhhccCCCCC--cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 024464          151 DSHSLAERARREKISERMKILQDLVPGCN--KVIGKALVLDEIINYIQSLQRQFLSMKLEAVNT  212 (267)
Q Consensus       151 ~~Hs~aERkRRekIner~~~Lr~LVP~~~--K~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~~  212 (267)
                      ..|+.+||+||++||+.|..|++|||.+.  .+.+|++||..||+||+.|+.++..|..+...+
T Consensus         3 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L   66 (79)
T d1nlwa_           3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL   66 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36999999999999999999999999863  235999999999999999999987776665443

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=9.9e-15  Score=104.76  Aligned_cols=52  Identities=31%  Similarity=0.469  Sum_probs=46.1

Q ss_pred             CcccHHHHHHHHHHHHHHHHhhccCCCC------CcCCChhhHHHHHHHHHHHHHHHH
Q 024464          151 DSHSLAERARREKISERMKILQDLVPGC------NKVIGKALVLDEIINYIQSLQRQF  202 (267)
Q Consensus       151 ~~Hs~aERkRRekIner~~~Lr~LVP~~------~K~~dKAsIL~eAI~YIk~LQ~qv  202 (267)
                      ..|+.+||+||++||+.|..|++|||++      ..+++|+.||+.||+||+.||+++
T Consensus         4 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            4799999999999999999999999953      233599999999999999998764

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.4e-14  Score=107.11  Aligned_cols=62  Identities=27%  Similarity=0.448  Sum_probs=54.0

Q ss_pred             CcccHHHHHHHHHHHHHHHHhhccCCCC-CcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 024464          151 DSHSLAERARREKISERMKILQDLVPGC-NKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNT  212 (267)
Q Consensus       151 ~~Hs~aERkRRekIner~~~Lr~LVP~~-~K~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~~  212 (267)
                      ..|+.+||+||++||+.|..|++|||++ ++.++|++||..||+||++|+.+++.|..+...+
T Consensus         4 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l   66 (83)
T d1nkpb_           4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL   66 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3699999999999999999999999976 3445999999999999999999977776666554

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=1.4e-14  Score=105.77  Aligned_cols=53  Identities=25%  Similarity=0.373  Sum_probs=47.7

Q ss_pred             CcccHHHHHHHHHHHHHHHHhhccCCCCC-cCCChhhHHHHHHHHHHHHHHHHH
Q 024464          151 DSHSLAERARREKISERMKILQDLVPGCN-KVIGKALVLDEIINYIQSLQRQFL  203 (267)
Q Consensus       151 ~~Hs~aERkRRekIner~~~Lr~LVP~~~-K~~dKAsIL~eAI~YIk~LQ~qv~  203 (267)
                      ..|+..||+||++||+.|..|++|||.+. +..+|+.||+.||+||++||++++
T Consensus        14 ~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            36999999999999999999999999874 445999999999999999997653

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.3e-14  Score=103.80  Aligned_cols=53  Identities=30%  Similarity=0.443  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHhhccCCCCCcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 024464          161 REKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNTR  213 (267)
Q Consensus       161 RekIner~~~Lr~LVP~~~K~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~~~  213 (267)
                      |++||++|.+|++|||++.+++|||+||.+||+||++||++++.|+.|...++
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~   53 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLK   53 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999875569999999999999999999999988877654

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.1e-14  Score=106.28  Aligned_cols=60  Identities=25%  Similarity=0.364  Sum_probs=52.3

Q ss_pred             cccHHHHHHHHHHHHHHHHhhccCCCCC--cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024464          152 SHSLAERARREKISERMKILQDLVPGCN--KVIGKALVLDEIINYIQSLQRQFLSMKLEAVN  211 (267)
Q Consensus       152 ~Hs~aERkRRekIner~~~Lr~LVP~~~--K~~dKAsIL~eAI~YIk~LQ~qv~~Lk~E~~~  211 (267)
                      .|+.+||+||++||+.|..|++|||++.  ..++|+.||..||+||++|++++..+..+...
T Consensus         9 ~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~   70 (88)
T d1nkpa_           9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDL   70 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999999763  33599999999999999999997776655544

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.3e-14  Score=102.58  Aligned_cols=51  Identities=29%  Similarity=0.487  Sum_probs=45.9

Q ss_pred             CcccHHHHHHHHHHHHHHHHhhccCCCCC-----cCCChhhHHHHHHHHHHHHHHH
Q 024464          151 DSHSLAERARREKISERMKILQDLVPGCN-----KVIGKALVLDEIINYIQSLQRQ  201 (267)
Q Consensus       151 ~~Hs~aERkRRekIner~~~Lr~LVP~~~-----K~~dKAsIL~eAI~YIk~LQ~q  201 (267)
                      ..|+.+||+||++||+.|..|++|||.+.     ...+|+.||..||+||+.||++
T Consensus         7 ~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~   62 (65)
T d1an4a_           7 AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS   62 (65)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            47999999999999999999999999763     1348999999999999999875